Multiple sequence alignment - TraesCS1A01G252900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G252900 chr1A 100.000 2418 0 0 1 2418 444172236 444169819 0.000000e+00 4466.0
1 TraesCS1A01G252900 chr1A 98.859 1928 20 2 1 1927 575548709 575546783 0.000000e+00 3437.0
2 TraesCS1A01G252900 chr1A 84.328 134 13 4 425 558 395460545 395460420 9.080000e-25 124.0
3 TraesCS1A01G252900 chr3A 98.396 1995 29 1 1 1995 698287228 698289219 0.000000e+00 3504.0
4 TraesCS1A01G252900 chr6D 98.248 1998 30 2 1 1994 57462454 57464450 0.000000e+00 3491.0
5 TraesCS1A01G252900 chr6D 89.344 366 32 4 11 370 413018362 413018726 1.020000e-123 453.0
6 TraesCS1A01G252900 chr2D 94.601 1241 51 4 770 1994 9927880 9929120 0.000000e+00 1906.0
7 TraesCS1A01G252900 chr3B 93.406 1198 65 2 812 1995 60739135 60737938 0.000000e+00 1762.0
8 TraesCS1A01G252900 chr6B 95.098 1020 43 6 767 1783 11405025 11406040 0.000000e+00 1600.0
9 TraesCS1A01G252900 chr6B 91.963 647 37 9 1353 1994 113762482 113761846 0.000000e+00 893.0
10 TraesCS1A01G252900 chr6B 95.000 400 19 1 357 755 11401276 11401675 5.670000e-176 627.0
11 TraesCS1A01G252900 chr6B 93.865 326 16 1 51 372 11400932 11401257 2.790000e-134 488.0
12 TraesCS1A01G252900 chr6B 82.692 104 18 0 1891 1994 377852291 377852188 2.560000e-15 93.5
13 TraesCS1A01G252900 chr6B 97.674 43 1 0 1 43 11399378 11399420 9.270000e-10 75.0
14 TraesCS1A01G252900 chr4A 92.492 626 42 3 1372 1994 654185299 654185922 0.000000e+00 891.0
15 TraesCS1A01G252900 chr4A 89.474 209 22 0 162 370 738531319 738531111 5.130000e-67 265.0
16 TraesCS1A01G252900 chr7B 91.783 645 44 6 1353 1994 609147764 609147126 0.000000e+00 889.0
17 TraesCS1A01G252900 chr4B 90.879 603 37 4 770 1371 361071008 361070423 0.000000e+00 793.0
18 TraesCS1A01G252900 chr7D 89.535 602 58 4 774 1371 445902225 445901625 0.000000e+00 758.0
19 TraesCS1A01G252900 chr1D 89.273 578 52 8 770 1342 21820787 21820215 0.000000e+00 715.0
20 TraesCS1A01G252900 chr1D 84.328 134 13 4 425 558 314988185 314988060 9.080000e-25 124.0
21 TraesCS1A01G252900 chr4D 92.775 346 24 1 1026 1371 3385830 3386174 1.290000e-137 499.0
22 TraesCS1A01G252900 chr7A 90.164 366 29 6 11 370 114026115 114025751 1.010000e-128 470.0
23 TraesCS1A01G252900 chr1B 89.373 367 30 6 11 370 660658055 660658419 1.020000e-123 453.0
24 TraesCS1A01G252900 chr1B 84.328 134 14 3 425 558 426685207 426685081 9.080000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G252900 chr1A 444169819 444172236 2417 True 4466.0 4466 100.00000 1 2418 1 chr1A.!!$R2 2417
1 TraesCS1A01G252900 chr1A 575546783 575548709 1926 True 3437.0 3437 98.85900 1 1927 1 chr1A.!!$R3 1926
2 TraesCS1A01G252900 chr3A 698287228 698289219 1991 False 3504.0 3504 98.39600 1 1995 1 chr3A.!!$F1 1994
3 TraesCS1A01G252900 chr6D 57462454 57464450 1996 False 3491.0 3491 98.24800 1 1994 1 chr6D.!!$F1 1993
4 TraesCS1A01G252900 chr2D 9927880 9929120 1240 False 1906.0 1906 94.60100 770 1994 1 chr2D.!!$F1 1224
5 TraesCS1A01G252900 chr3B 60737938 60739135 1197 True 1762.0 1762 93.40600 812 1995 1 chr3B.!!$R1 1183
6 TraesCS1A01G252900 chr6B 113761846 113762482 636 True 893.0 893 91.96300 1353 1994 1 chr6B.!!$R1 641
7 TraesCS1A01G252900 chr6B 11399378 11406040 6662 False 697.5 1600 95.40925 1 1783 4 chr6B.!!$F1 1782
8 TraesCS1A01G252900 chr4A 654185299 654185922 623 False 891.0 891 92.49200 1372 1994 1 chr4A.!!$F1 622
9 TraesCS1A01G252900 chr7B 609147126 609147764 638 True 889.0 889 91.78300 1353 1994 1 chr7B.!!$R1 641
10 TraesCS1A01G252900 chr4B 361070423 361071008 585 True 793.0 793 90.87900 770 1371 1 chr4B.!!$R1 601
11 TraesCS1A01G252900 chr7D 445901625 445902225 600 True 758.0 758 89.53500 774 1371 1 chr7D.!!$R1 597
12 TraesCS1A01G252900 chr1D 21820215 21820787 572 True 715.0 715 89.27300 770 1342 1 chr1D.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 2007 0.597637 CGTGTGTGTCTGGTCCAGTC 60.598 60.0 18.65 13.68 32.61 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 6976 0.028902 GTTGGCTTGTTCTCGCGTTT 59.971 50.0 5.77 0.0 0.0 3.6 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
463 2007 0.597637 CGTGTGTGTCTGGTCCAGTC 60.598 60.000 18.65 13.68 32.61 3.51
760 2305 5.239525 GGTGCTTCTACTTGTGAAAGAACAT 59.760 40.000 9.02 0.00 0.00 2.71
878 5763 7.429636 TTCTGAATAAAGTCTAAACCCAACG 57.570 36.000 0.00 0.00 0.00 4.10
1995 6912 2.376956 GCGCAACGAGTCATCTAGTAG 58.623 52.381 0.30 0.00 0.00 2.57
1996 6913 2.855187 GCGCAACGAGTCATCTAGTAGG 60.855 54.545 0.30 0.00 0.00 3.18
1997 6914 2.287069 CGCAACGAGTCATCTAGTAGGG 60.287 54.545 0.00 0.00 0.00 3.53
1998 6915 2.950309 GCAACGAGTCATCTAGTAGGGA 59.050 50.000 0.00 0.00 0.00 4.20
1999 6916 3.380637 GCAACGAGTCATCTAGTAGGGAA 59.619 47.826 0.00 0.00 0.00 3.97
2000 6917 4.142227 GCAACGAGTCATCTAGTAGGGAAA 60.142 45.833 0.00 0.00 0.00 3.13
2001 6918 5.623824 GCAACGAGTCATCTAGTAGGGAAAA 60.624 44.000 0.00 0.00 0.00 2.29
2002 6919 5.579564 ACGAGTCATCTAGTAGGGAAAAC 57.420 43.478 0.00 0.00 0.00 2.43
2003 6920 5.014858 ACGAGTCATCTAGTAGGGAAAACA 58.985 41.667 0.00 0.00 0.00 2.83
2004 6921 5.479375 ACGAGTCATCTAGTAGGGAAAACAA 59.521 40.000 0.00 0.00 0.00 2.83
2005 6922 6.014840 ACGAGTCATCTAGTAGGGAAAACAAA 60.015 38.462 0.00 0.00 0.00 2.83
2006 6923 6.872020 CGAGTCATCTAGTAGGGAAAACAAAA 59.128 38.462 0.00 0.00 0.00 2.44
2007 6924 7.063544 CGAGTCATCTAGTAGGGAAAACAAAAG 59.936 40.741 0.00 0.00 0.00 2.27
2008 6925 7.974504 AGTCATCTAGTAGGGAAAACAAAAGA 58.025 34.615 0.00 0.00 0.00 2.52
2009 6926 8.097662 AGTCATCTAGTAGGGAAAACAAAAGAG 58.902 37.037 0.00 0.00 0.00 2.85
2010 6927 8.095169 GTCATCTAGTAGGGAAAACAAAAGAGA 58.905 37.037 0.00 0.00 0.00 3.10
2011 6928 8.656806 TCATCTAGTAGGGAAAACAAAAGAGAA 58.343 33.333 0.00 0.00 0.00 2.87
2012 6929 9.454859 CATCTAGTAGGGAAAACAAAAGAGAAT 57.545 33.333 0.00 0.00 0.00 2.40
2016 6933 8.637196 AGTAGGGAAAACAAAAGAGAATTAGG 57.363 34.615 0.00 0.00 0.00 2.69
2017 6934 8.445588 AGTAGGGAAAACAAAAGAGAATTAGGA 58.554 33.333 0.00 0.00 0.00 2.94
2018 6935 7.526142 AGGGAAAACAAAAGAGAATTAGGAC 57.474 36.000 0.00 0.00 0.00 3.85
2019 6936 6.206829 AGGGAAAACAAAAGAGAATTAGGACG 59.793 38.462 0.00 0.00 0.00 4.79
2020 6937 5.856986 GGAAAACAAAAGAGAATTAGGACGC 59.143 40.000 0.00 0.00 0.00 5.19
2021 6938 4.663636 AACAAAAGAGAATTAGGACGCG 57.336 40.909 3.53 3.53 0.00 6.01
2022 6939 2.415512 ACAAAAGAGAATTAGGACGCGC 59.584 45.455 5.73 0.00 0.00 6.86
2023 6940 1.653151 AAAGAGAATTAGGACGCGCC 58.347 50.000 5.73 9.03 0.00 6.53
2024 6941 0.179081 AAGAGAATTAGGACGCGCCC 60.179 55.000 5.73 3.78 37.37 6.13
2025 6942 1.594564 GAGAATTAGGACGCGCCCC 60.595 63.158 8.22 9.17 37.37 5.80
2026 6943 2.029307 GAGAATTAGGACGCGCCCCT 62.029 60.000 21.83 21.83 37.37 4.79
2027 6944 1.594564 GAATTAGGACGCGCCCCTC 60.595 63.158 21.79 4.90 37.37 4.30
2028 6945 2.306255 GAATTAGGACGCGCCCCTCA 62.306 60.000 21.79 13.23 37.37 3.86
2029 6946 1.906105 AATTAGGACGCGCCCCTCAA 61.906 55.000 21.79 14.92 37.37 3.02
2030 6947 1.906105 ATTAGGACGCGCCCCTCAAA 61.906 55.000 21.79 13.31 37.37 2.69
2031 6948 2.791501 TTAGGACGCGCCCCTCAAAC 62.792 60.000 21.79 0.00 37.37 2.93
2036 6953 2.975799 GCGCCCCTCAAACGACAA 60.976 61.111 0.00 0.00 0.00 3.18
2037 6954 2.943653 CGCCCCTCAAACGACAAC 59.056 61.111 0.00 0.00 0.00 3.32
2038 6955 1.890041 CGCCCCTCAAACGACAACA 60.890 57.895 0.00 0.00 0.00 3.33
2039 6956 1.234615 CGCCCCTCAAACGACAACAT 61.235 55.000 0.00 0.00 0.00 2.71
2040 6957 1.816074 GCCCCTCAAACGACAACATA 58.184 50.000 0.00 0.00 0.00 2.29
2041 6958 2.365582 GCCCCTCAAACGACAACATAT 58.634 47.619 0.00 0.00 0.00 1.78
2042 6959 3.537580 GCCCCTCAAACGACAACATATA 58.462 45.455 0.00 0.00 0.00 0.86
2043 6960 4.134563 GCCCCTCAAACGACAACATATAT 58.865 43.478 0.00 0.00 0.00 0.86
2044 6961 4.024048 GCCCCTCAAACGACAACATATATG 60.024 45.833 11.29 11.29 0.00 1.78
2045 6962 4.515191 CCCCTCAAACGACAACATATATGG 59.485 45.833 16.96 2.79 0.00 2.74
2046 6963 4.515191 CCCTCAAACGACAACATATATGGG 59.485 45.833 16.96 10.72 0.00 4.00
2047 6964 4.515191 CCTCAAACGACAACATATATGGGG 59.485 45.833 16.96 10.39 0.00 4.96
2048 6965 5.105567 TCAAACGACAACATATATGGGGT 57.894 39.130 16.96 13.34 0.00 4.95
2049 6966 6.236558 TCAAACGACAACATATATGGGGTA 57.763 37.500 16.96 0.00 0.00 3.69
2050 6967 6.833041 TCAAACGACAACATATATGGGGTAT 58.167 36.000 16.96 4.16 0.00 2.73
2051 6968 6.708502 TCAAACGACAACATATATGGGGTATG 59.291 38.462 16.96 11.60 36.01 2.39
2052 6969 5.818678 ACGACAACATATATGGGGTATGT 57.181 39.130 16.96 12.26 42.83 2.29
2053 6970 5.547465 ACGACAACATATATGGGGTATGTG 58.453 41.667 16.96 9.94 40.80 3.21
2054 6971 5.305902 ACGACAACATATATGGGGTATGTGA 59.694 40.000 16.96 0.00 40.80 3.58
2055 6972 6.183361 ACGACAACATATATGGGGTATGTGAA 60.183 38.462 16.96 0.00 40.80 3.18
2056 6973 6.708502 CGACAACATATATGGGGTATGTGAAA 59.291 38.462 16.96 0.00 40.80 2.69
2057 6974 7.227711 CGACAACATATATGGGGTATGTGAAAA 59.772 37.037 16.96 0.00 40.80 2.29
2058 6975 8.463930 ACAACATATATGGGGTATGTGAAAAG 57.536 34.615 16.96 0.00 40.80 2.27
2059 6976 8.278639 ACAACATATATGGGGTATGTGAAAAGA 58.721 33.333 16.96 0.00 40.80 2.52
2060 6977 9.130661 CAACATATATGGGGTATGTGAAAAGAA 57.869 33.333 16.96 0.00 40.80 2.52
2061 6978 9.707957 AACATATATGGGGTATGTGAAAAGAAA 57.292 29.630 16.96 0.00 40.80 2.52
2062 6979 9.131791 ACATATATGGGGTATGTGAAAAGAAAC 57.868 33.333 16.96 0.00 40.32 2.78
2063 6980 6.693315 ATATGGGGTATGTGAAAAGAAACG 57.307 37.500 0.00 0.00 0.00 3.60
2064 6981 2.554893 TGGGGTATGTGAAAAGAAACGC 59.445 45.455 0.00 0.00 0.00 4.84
2065 6982 2.413634 GGGGTATGTGAAAAGAAACGCG 60.414 50.000 3.53 3.53 0.00 6.01
2066 6983 2.481185 GGGTATGTGAAAAGAAACGCGA 59.519 45.455 15.93 0.00 0.00 5.87
2067 6984 3.424433 GGGTATGTGAAAAGAAACGCGAG 60.424 47.826 15.93 0.00 0.00 5.03
2068 6985 3.430895 GGTATGTGAAAAGAAACGCGAGA 59.569 43.478 15.93 0.00 0.00 4.04
2069 6986 4.084223 GGTATGTGAAAAGAAACGCGAGAA 60.084 41.667 15.93 0.00 0.00 2.87
2070 6987 3.313274 TGTGAAAAGAAACGCGAGAAC 57.687 42.857 15.93 0.65 0.00 3.01
2071 6988 2.673862 TGTGAAAAGAAACGCGAGAACA 59.326 40.909 15.93 0.79 0.00 3.18
2072 6989 3.125487 TGTGAAAAGAAACGCGAGAACAA 59.875 39.130 15.93 0.00 0.00 2.83
2073 6990 3.719352 GTGAAAAGAAACGCGAGAACAAG 59.281 43.478 15.93 0.00 0.00 3.16
2074 6991 2.384899 AAAGAAACGCGAGAACAAGC 57.615 45.000 15.93 0.00 0.00 4.01
2075 6992 0.586802 AAGAAACGCGAGAACAAGCC 59.413 50.000 15.93 0.00 0.00 4.35
2076 6993 0.531974 AGAAACGCGAGAACAAGCCA 60.532 50.000 15.93 0.00 0.00 4.75
2077 6994 0.306533 GAAACGCGAGAACAAGCCAA 59.693 50.000 15.93 0.00 0.00 4.52
2078 6995 0.028902 AAACGCGAGAACAAGCCAAC 59.971 50.000 15.93 0.00 0.00 3.77
2079 6996 1.092921 AACGCGAGAACAAGCCAACA 61.093 50.000 15.93 0.00 0.00 3.33
2080 6997 1.082756 CGCGAGAACAAGCCAACAC 60.083 57.895 0.00 0.00 0.00 3.32
2081 6998 1.771073 CGCGAGAACAAGCCAACACA 61.771 55.000 0.00 0.00 0.00 3.72
2082 6999 0.380378 GCGAGAACAAGCCAACACAA 59.620 50.000 0.00 0.00 0.00 3.33
2083 7000 1.202245 GCGAGAACAAGCCAACACAAA 60.202 47.619 0.00 0.00 0.00 2.83
2084 7001 2.733858 GCGAGAACAAGCCAACACAAAA 60.734 45.455 0.00 0.00 0.00 2.44
2085 7002 2.851824 CGAGAACAAGCCAACACAAAAC 59.148 45.455 0.00 0.00 0.00 2.43
2086 7003 3.671971 CGAGAACAAGCCAACACAAAACA 60.672 43.478 0.00 0.00 0.00 2.83
2087 7004 4.241681 GAGAACAAGCCAACACAAAACAA 58.758 39.130 0.00 0.00 0.00 2.83
2088 7005 4.636249 AGAACAAGCCAACACAAAACAAA 58.364 34.783 0.00 0.00 0.00 2.83
2089 7006 5.059833 AGAACAAGCCAACACAAAACAAAA 58.940 33.333 0.00 0.00 0.00 2.44
2090 7007 4.740741 ACAAGCCAACACAAAACAAAAC 57.259 36.364 0.00 0.00 0.00 2.43
2091 7008 3.185391 ACAAGCCAACACAAAACAAAACG 59.815 39.130 0.00 0.00 0.00 3.60
2092 7009 2.342179 AGCCAACACAAAACAAAACGG 58.658 42.857 0.00 0.00 0.00 4.44
2093 7010 1.395262 GCCAACACAAAACAAAACGGG 59.605 47.619 0.00 0.00 0.00 5.28
2094 7011 2.931320 GCCAACACAAAACAAAACGGGA 60.931 45.455 0.00 0.00 0.00 5.14
2095 7012 2.668945 CCAACACAAAACAAAACGGGAC 59.331 45.455 0.00 0.00 0.00 4.46
2096 7013 3.318017 CAACACAAAACAAAACGGGACA 58.682 40.909 0.00 0.00 0.00 4.02
2097 7014 3.662247 ACACAAAACAAAACGGGACAA 57.338 38.095 0.00 0.00 0.00 3.18
2098 7015 3.991367 ACACAAAACAAAACGGGACAAA 58.009 36.364 0.00 0.00 0.00 2.83
2099 7016 3.991121 ACACAAAACAAAACGGGACAAAG 59.009 39.130 0.00 0.00 0.00 2.77
2100 7017 4.238514 CACAAAACAAAACGGGACAAAGA 58.761 39.130 0.00 0.00 0.00 2.52
2101 7018 4.686554 CACAAAACAAAACGGGACAAAGAA 59.313 37.500 0.00 0.00 0.00 2.52
2102 7019 4.926832 ACAAAACAAAACGGGACAAAGAAG 59.073 37.500 0.00 0.00 0.00 2.85
2103 7020 5.164954 CAAAACAAAACGGGACAAAGAAGA 58.835 37.500 0.00 0.00 0.00 2.87
2104 7021 4.632538 AACAAAACGGGACAAAGAAGAG 57.367 40.909 0.00 0.00 0.00 2.85
2105 7022 2.949644 ACAAAACGGGACAAAGAAGAGG 59.050 45.455 0.00 0.00 0.00 3.69
2106 7023 1.605753 AAACGGGACAAAGAAGAGGC 58.394 50.000 0.00 0.00 0.00 4.70
2107 7024 0.602905 AACGGGACAAAGAAGAGGCG 60.603 55.000 0.00 0.00 0.00 5.52
2108 7025 1.292223 CGGGACAAAGAAGAGGCGA 59.708 57.895 0.00 0.00 0.00 5.54
2109 7026 0.320421 CGGGACAAAGAAGAGGCGAA 60.320 55.000 0.00 0.00 0.00 4.70
2110 7027 1.676014 CGGGACAAAGAAGAGGCGAAT 60.676 52.381 0.00 0.00 0.00 3.34
2111 7028 1.740025 GGGACAAAGAAGAGGCGAATG 59.260 52.381 0.00 0.00 0.00 2.67
2112 7029 2.615493 GGGACAAAGAAGAGGCGAATGA 60.615 50.000 0.00 0.00 0.00 2.57
2113 7030 2.675348 GGACAAAGAAGAGGCGAATGAG 59.325 50.000 0.00 0.00 0.00 2.90
2114 7031 2.079925 ACAAAGAAGAGGCGAATGAGC 58.920 47.619 0.00 0.00 0.00 4.26
2115 7032 2.289945 ACAAAGAAGAGGCGAATGAGCT 60.290 45.455 0.00 0.00 37.29 4.09
2116 7033 2.021355 AAGAAGAGGCGAATGAGCTG 57.979 50.000 0.00 0.00 37.29 4.24
2117 7034 1.189752 AGAAGAGGCGAATGAGCTGA 58.810 50.000 0.00 0.00 37.29 4.26
2118 7035 1.136695 AGAAGAGGCGAATGAGCTGAG 59.863 52.381 0.00 0.00 37.29 3.35
2119 7036 1.135915 GAAGAGGCGAATGAGCTGAGA 59.864 52.381 0.00 0.00 37.29 3.27
2120 7037 0.459489 AGAGGCGAATGAGCTGAGAC 59.541 55.000 0.00 0.00 37.29 3.36
2121 7038 0.869454 GAGGCGAATGAGCTGAGACG 60.869 60.000 0.00 0.00 37.29 4.18
2122 7039 1.139734 GGCGAATGAGCTGAGACGA 59.860 57.895 0.00 0.00 37.29 4.20
2123 7040 0.869454 GGCGAATGAGCTGAGACGAG 60.869 60.000 0.00 0.00 37.29 4.18
2124 7041 1.478622 GCGAATGAGCTGAGACGAGC 61.479 60.000 0.00 0.00 39.46 5.03
2125 7042 0.179153 CGAATGAGCTGAGACGAGCA 60.179 55.000 0.00 0.00 41.83 4.26
2126 7043 1.276415 GAATGAGCTGAGACGAGCAC 58.724 55.000 0.00 0.00 41.83 4.40
2127 7044 0.457509 AATGAGCTGAGACGAGCACG 60.458 55.000 0.76 0.76 41.83 5.34
2128 7045 2.878520 GAGCTGAGACGAGCACGC 60.879 66.667 2.62 0.00 41.83 5.34
2129 7046 4.427661 AGCTGAGACGAGCACGCC 62.428 66.667 2.62 0.00 41.83 5.68
2130 7047 4.427661 GCTGAGACGAGCACGCCT 62.428 66.667 2.62 0.00 43.96 5.52
2131 7048 2.505777 CTGAGACGAGCACGCCTG 60.506 66.667 2.62 0.00 43.96 4.85
2132 7049 2.982744 CTGAGACGAGCACGCCTGA 61.983 63.158 2.62 0.00 43.96 3.86
2133 7050 2.276863 CTGAGACGAGCACGCCTGAT 62.277 60.000 2.62 0.00 43.96 2.90
2134 7051 1.587613 GAGACGAGCACGCCTGATC 60.588 63.158 2.62 0.00 43.96 2.92
2135 7052 2.181777 GACGAGCACGCCTGATCA 59.818 61.111 2.62 0.00 43.96 2.92
2136 7053 1.446099 GACGAGCACGCCTGATCAA 60.446 57.895 2.62 0.00 43.96 2.57
2137 7054 1.416813 GACGAGCACGCCTGATCAAG 61.417 60.000 2.62 0.00 43.96 3.02
2138 7055 1.446792 CGAGCACGCCTGATCAAGT 60.447 57.895 0.00 0.00 31.81 3.16
2139 7056 1.016130 CGAGCACGCCTGATCAAGTT 61.016 55.000 0.00 0.00 31.81 2.66
2140 7057 1.160137 GAGCACGCCTGATCAAGTTT 58.840 50.000 0.00 0.00 32.67 2.66
2141 7058 0.877071 AGCACGCCTGATCAAGTTTG 59.123 50.000 0.00 0.00 0.00 2.93
2142 7059 0.593128 GCACGCCTGATCAAGTTTGT 59.407 50.000 0.00 0.00 0.00 2.83
2143 7060 1.664016 GCACGCCTGATCAAGTTTGTG 60.664 52.381 0.00 3.31 0.00 3.33
2144 7061 0.593128 ACGCCTGATCAAGTTTGTGC 59.407 50.000 0.00 0.00 0.00 4.57
2145 7062 0.453282 CGCCTGATCAAGTTTGTGCG 60.453 55.000 0.00 0.00 34.52 5.34
2146 7063 0.874390 GCCTGATCAAGTTTGTGCGA 59.126 50.000 0.00 0.00 0.00 5.10
2147 7064 1.266718 GCCTGATCAAGTTTGTGCGAA 59.733 47.619 0.00 0.00 0.00 4.70
2148 7065 2.918131 GCCTGATCAAGTTTGTGCGAAC 60.918 50.000 0.00 0.00 0.00 3.95
2149 7066 2.350772 CCTGATCAAGTTTGTGCGAACC 60.351 50.000 0.00 0.00 0.00 3.62
2150 7067 2.290367 CTGATCAAGTTTGTGCGAACCA 59.710 45.455 0.00 0.00 0.00 3.67
2151 7068 2.884012 TGATCAAGTTTGTGCGAACCAT 59.116 40.909 0.00 0.00 0.00 3.55
2152 7069 3.317711 TGATCAAGTTTGTGCGAACCATT 59.682 39.130 0.00 0.00 0.00 3.16
2153 7070 4.517075 TGATCAAGTTTGTGCGAACCATTA 59.483 37.500 0.00 0.00 0.00 1.90
2154 7071 4.902443 TCAAGTTTGTGCGAACCATTAA 57.098 36.364 0.00 0.00 0.00 1.40
2155 7072 5.250235 TCAAGTTTGTGCGAACCATTAAA 57.750 34.783 0.00 0.00 0.00 1.52
2156 7073 5.277825 TCAAGTTTGTGCGAACCATTAAAG 58.722 37.500 0.00 0.00 0.00 1.85
2157 7074 3.638484 AGTTTGTGCGAACCATTAAAGC 58.362 40.909 0.00 0.00 0.00 3.51
2158 7075 3.067461 AGTTTGTGCGAACCATTAAAGCA 59.933 39.130 0.00 0.00 35.27 3.91
2159 7076 3.717400 TTGTGCGAACCATTAAAGCAA 57.283 38.095 0.00 0.00 39.67 3.91
2160 7077 3.717400 TGTGCGAACCATTAAAGCAAA 57.283 38.095 0.00 0.00 39.67 3.68
2161 7078 3.376540 TGTGCGAACCATTAAAGCAAAC 58.623 40.909 0.00 0.00 39.67 2.93
2162 7079 2.729360 GTGCGAACCATTAAAGCAAACC 59.271 45.455 0.00 0.00 39.67 3.27
2163 7080 2.362397 TGCGAACCATTAAAGCAAACCA 59.638 40.909 0.00 0.00 34.66 3.67
2164 7081 3.181475 TGCGAACCATTAAAGCAAACCAA 60.181 39.130 0.00 0.00 34.66 3.67
2165 7082 3.993736 GCGAACCATTAAAGCAAACCAAT 59.006 39.130 0.00 0.00 0.00 3.16
2166 7083 4.091365 GCGAACCATTAAAGCAAACCAATC 59.909 41.667 0.00 0.00 0.00 2.67
2167 7084 4.323336 CGAACCATTAAAGCAAACCAATCG 59.677 41.667 0.00 0.00 0.00 3.34
2168 7085 4.186856 ACCATTAAAGCAAACCAATCGG 57.813 40.909 0.00 0.00 38.77 4.18
2185 7102 6.978343 CAATCGGTTGGTTATAGACTTTCA 57.022 37.500 0.00 0.00 0.00 2.69
2186 7103 6.772078 CAATCGGTTGGTTATAGACTTTCAC 58.228 40.000 0.00 0.00 0.00 3.18
2187 7104 4.487948 TCGGTTGGTTATAGACTTTCACG 58.512 43.478 0.00 0.00 0.00 4.35
2188 7105 4.218200 TCGGTTGGTTATAGACTTTCACGA 59.782 41.667 0.00 0.00 0.00 4.35
2189 7106 4.925054 CGGTTGGTTATAGACTTTCACGAA 59.075 41.667 0.00 0.00 0.00 3.85
2190 7107 5.061808 CGGTTGGTTATAGACTTTCACGAAG 59.938 44.000 0.00 0.00 41.32 3.79
2191 7108 6.161381 GGTTGGTTATAGACTTTCACGAAGA 58.839 40.000 0.00 0.00 38.77 2.87
2192 7109 6.817140 GGTTGGTTATAGACTTTCACGAAGAT 59.183 38.462 0.00 0.00 38.77 2.40
2193 7110 7.201530 GGTTGGTTATAGACTTTCACGAAGATG 60.202 40.741 0.00 0.00 38.77 2.90
2194 7111 7.165460 TGGTTATAGACTTTCACGAAGATGA 57.835 36.000 0.00 0.00 38.77 2.92
2195 7112 7.258441 TGGTTATAGACTTTCACGAAGATGAG 58.742 38.462 0.00 0.00 38.77 2.90
2196 7113 7.122204 TGGTTATAGACTTTCACGAAGATGAGA 59.878 37.037 0.00 0.00 38.77 3.27
2197 7114 8.138712 GGTTATAGACTTTCACGAAGATGAGAT 58.861 37.037 0.00 0.00 38.77 2.75
2198 7115 9.522804 GTTATAGACTTTCACGAAGATGAGATT 57.477 33.333 0.00 0.00 38.77 2.40
2201 7118 9.743057 ATAGACTTTCACGAAGATGAGATTTAG 57.257 33.333 0.00 0.00 38.77 1.85
2202 7119 6.533367 AGACTTTCACGAAGATGAGATTTAGC 59.467 38.462 0.00 0.00 38.77 3.09
2203 7120 6.166279 ACTTTCACGAAGATGAGATTTAGCA 58.834 36.000 0.00 0.00 38.77 3.49
2204 7121 6.650807 ACTTTCACGAAGATGAGATTTAGCAA 59.349 34.615 0.00 0.00 38.77 3.91
2205 7122 7.173218 ACTTTCACGAAGATGAGATTTAGCAAA 59.827 33.333 0.00 0.00 38.77 3.68
2206 7123 7.615582 TTCACGAAGATGAGATTTAGCAAAT 57.384 32.000 0.00 0.00 0.00 2.32
2207 7124 7.239166 TCACGAAGATGAGATTTAGCAAATC 57.761 36.000 11.41 11.41 45.98 2.17
2208 7125 6.258727 TCACGAAGATGAGATTTAGCAAATCC 59.741 38.462 14.21 9.05 46.65 3.01
2209 7126 5.235186 ACGAAGATGAGATTTAGCAAATCCG 59.765 40.000 14.21 11.83 46.65 4.18
2210 7127 5.463392 CGAAGATGAGATTTAGCAAATCCGA 59.537 40.000 14.21 5.75 46.65 4.55
2211 7128 6.018751 CGAAGATGAGATTTAGCAAATCCGAA 60.019 38.462 14.21 5.22 46.65 4.30
2212 7129 7.465916 CGAAGATGAGATTTAGCAAATCCGAAA 60.466 37.037 14.21 3.50 46.65 3.46
2213 7130 7.256756 AGATGAGATTTAGCAAATCCGAAAG 57.743 36.000 14.21 0.00 46.65 2.62
2241 7158 5.862678 AAACATCTCTTCTCTAGCTACCC 57.137 43.478 0.00 0.00 0.00 3.69
2242 7159 4.528076 ACATCTCTTCTCTAGCTACCCA 57.472 45.455 0.00 0.00 0.00 4.51
2243 7160 4.469657 ACATCTCTTCTCTAGCTACCCAG 58.530 47.826 0.00 0.00 0.00 4.45
2244 7161 4.079443 ACATCTCTTCTCTAGCTACCCAGT 60.079 45.833 0.00 0.00 0.00 4.00
2245 7162 4.159244 TCTCTTCTCTAGCTACCCAGTC 57.841 50.000 0.00 0.00 0.00 3.51
2246 7163 2.875933 CTCTTCTCTAGCTACCCAGTCG 59.124 54.545 0.00 0.00 0.00 4.18
2247 7164 2.504585 TCTTCTCTAGCTACCCAGTCGA 59.495 50.000 0.00 0.00 0.00 4.20
2248 7165 3.054582 TCTTCTCTAGCTACCCAGTCGAA 60.055 47.826 0.00 0.00 0.00 3.71
2249 7166 3.579534 TCTCTAGCTACCCAGTCGAAT 57.420 47.619 0.00 0.00 0.00 3.34
2250 7167 3.478509 TCTCTAGCTACCCAGTCGAATC 58.521 50.000 0.00 0.00 0.00 2.52
2251 7168 3.118000 TCTCTAGCTACCCAGTCGAATCA 60.118 47.826 0.00 0.00 0.00 2.57
2252 7169 3.628008 TCTAGCTACCCAGTCGAATCAA 58.372 45.455 0.00 0.00 0.00 2.57
2253 7170 4.021229 TCTAGCTACCCAGTCGAATCAAA 58.979 43.478 0.00 0.00 0.00 2.69
2254 7171 3.695830 AGCTACCCAGTCGAATCAAAA 57.304 42.857 0.00 0.00 0.00 2.44
2255 7172 4.222124 AGCTACCCAGTCGAATCAAAAT 57.778 40.909 0.00 0.00 0.00 1.82
2256 7173 5.353394 AGCTACCCAGTCGAATCAAAATA 57.647 39.130 0.00 0.00 0.00 1.40
2257 7174 5.741011 AGCTACCCAGTCGAATCAAAATAA 58.259 37.500 0.00 0.00 0.00 1.40
2258 7175 6.177610 AGCTACCCAGTCGAATCAAAATAAA 58.822 36.000 0.00 0.00 0.00 1.40
2259 7176 6.828785 AGCTACCCAGTCGAATCAAAATAAAT 59.171 34.615 0.00 0.00 0.00 1.40
2260 7177 6.912591 GCTACCCAGTCGAATCAAAATAAATG 59.087 38.462 0.00 0.00 0.00 2.32
2261 7178 7.201696 GCTACCCAGTCGAATCAAAATAAATGA 60.202 37.037 0.00 0.00 0.00 2.57
2262 7179 7.461182 ACCCAGTCGAATCAAAATAAATGAA 57.539 32.000 0.00 0.00 0.00 2.57
2263 7180 7.891561 ACCCAGTCGAATCAAAATAAATGAAA 58.108 30.769 0.00 0.00 0.00 2.69
2264 7181 8.364142 ACCCAGTCGAATCAAAATAAATGAAAA 58.636 29.630 0.00 0.00 0.00 2.29
2265 7182 8.647226 CCCAGTCGAATCAAAATAAATGAAAAC 58.353 33.333 0.00 0.00 0.00 2.43
2266 7183 9.190858 CCAGTCGAATCAAAATAAATGAAAACA 57.809 29.630 0.00 0.00 0.00 2.83
2283 7200 9.918630 AATGAAAACAGAGAATAAAAGGACATG 57.081 29.630 0.00 0.00 0.00 3.21
2284 7201 7.370383 TGAAAACAGAGAATAAAAGGACATGC 58.630 34.615 0.00 0.00 0.00 4.06
2285 7202 6.899393 AAACAGAGAATAAAAGGACATGCA 57.101 33.333 0.00 0.00 0.00 3.96
2286 7203 6.506500 AACAGAGAATAAAAGGACATGCAG 57.493 37.500 0.00 0.00 0.00 4.41
2287 7204 4.397417 ACAGAGAATAAAAGGACATGCAGC 59.603 41.667 0.00 0.00 0.00 5.25
2288 7205 3.950395 AGAGAATAAAAGGACATGCAGCC 59.050 43.478 0.00 0.00 0.00 4.85
2289 7206 3.026694 AGAATAAAAGGACATGCAGCCC 58.973 45.455 0.00 0.00 0.00 5.19
2290 7207 2.834638 ATAAAAGGACATGCAGCCCT 57.165 45.000 0.00 0.00 0.00 5.19
2291 7208 2.128771 TAAAAGGACATGCAGCCCTC 57.871 50.000 4.99 0.00 0.00 4.30
2292 7209 0.613012 AAAAGGACATGCAGCCCTCC 60.613 55.000 4.99 0.06 0.00 4.30
2293 7210 1.792757 AAAGGACATGCAGCCCTCCA 61.793 55.000 4.99 0.00 0.00 3.86
2294 7211 1.578215 AAGGACATGCAGCCCTCCAT 61.578 55.000 4.99 0.00 0.00 3.41
2295 7212 0.695462 AGGACATGCAGCCCTCCATA 60.695 55.000 0.00 0.00 0.00 2.74
2296 7213 0.250640 GGACATGCAGCCCTCCATAG 60.251 60.000 0.00 0.00 0.00 2.23
2297 7214 0.761187 GACATGCAGCCCTCCATAGA 59.239 55.000 0.00 0.00 0.00 1.98
2298 7215 1.141657 GACATGCAGCCCTCCATAGAA 59.858 52.381 0.00 0.00 0.00 2.10
2299 7216 1.779092 ACATGCAGCCCTCCATAGAAT 59.221 47.619 0.00 0.00 0.00 2.40
2300 7217 2.981784 ACATGCAGCCCTCCATAGAATA 59.018 45.455 0.00 0.00 0.00 1.75
2301 7218 3.395607 ACATGCAGCCCTCCATAGAATAA 59.604 43.478 0.00 0.00 0.00 1.40
2302 7219 3.492102 TGCAGCCCTCCATAGAATAAC 57.508 47.619 0.00 0.00 0.00 1.89
2303 7220 3.048600 TGCAGCCCTCCATAGAATAACT 58.951 45.455 0.00 0.00 0.00 2.24
2304 7221 4.231273 TGCAGCCCTCCATAGAATAACTA 58.769 43.478 0.00 0.00 35.42 2.24
2305 7222 4.040461 TGCAGCCCTCCATAGAATAACTAC 59.960 45.833 0.00 0.00 33.62 2.73
2306 7223 4.040461 GCAGCCCTCCATAGAATAACTACA 59.960 45.833 0.00 0.00 33.62 2.74
2307 7224 5.454755 GCAGCCCTCCATAGAATAACTACAA 60.455 44.000 0.00 0.00 33.62 2.41
2308 7225 5.992217 CAGCCCTCCATAGAATAACTACAAC 59.008 44.000 0.00 0.00 33.62 3.32
2309 7226 5.071923 AGCCCTCCATAGAATAACTACAACC 59.928 44.000 0.00 0.00 33.62 3.77
2310 7227 5.745181 GCCCTCCATAGAATAACTACAACCC 60.745 48.000 0.00 0.00 33.62 4.11
2311 7228 5.368523 CCCTCCATAGAATAACTACAACCCA 59.631 44.000 0.00 0.00 33.62 4.51
2312 7229 6.289064 CCTCCATAGAATAACTACAACCCAC 58.711 44.000 0.00 0.00 33.62 4.61
2313 7230 6.126883 CCTCCATAGAATAACTACAACCCACA 60.127 42.308 0.00 0.00 33.62 4.17
2314 7231 7.260387 TCCATAGAATAACTACAACCCACAA 57.740 36.000 0.00 0.00 33.62 3.33
2315 7232 7.691213 TCCATAGAATAACTACAACCCACAAA 58.309 34.615 0.00 0.00 33.62 2.83
2316 7233 7.827236 TCCATAGAATAACTACAACCCACAAAG 59.173 37.037 0.00 0.00 33.62 2.77
2317 7234 7.827236 CCATAGAATAACTACAACCCACAAAGA 59.173 37.037 0.00 0.00 33.62 2.52
2318 7235 9.226606 CATAGAATAACTACAACCCACAAAGAA 57.773 33.333 0.00 0.00 33.62 2.52
2319 7236 7.506328 AGAATAACTACAACCCACAAAGAAC 57.494 36.000 0.00 0.00 0.00 3.01
2320 7237 7.287810 AGAATAACTACAACCCACAAAGAACT 58.712 34.615 0.00 0.00 0.00 3.01
2321 7238 7.444487 AGAATAACTACAACCCACAAAGAACTC 59.556 37.037 0.00 0.00 0.00 3.01
2322 7239 4.497291 ACTACAACCCACAAAGAACTCA 57.503 40.909 0.00 0.00 0.00 3.41
2323 7240 4.850680 ACTACAACCCACAAAGAACTCAA 58.149 39.130 0.00 0.00 0.00 3.02
2324 7241 5.445964 ACTACAACCCACAAAGAACTCAAT 58.554 37.500 0.00 0.00 0.00 2.57
2325 7242 6.597562 ACTACAACCCACAAAGAACTCAATA 58.402 36.000 0.00 0.00 0.00 1.90
2326 7243 5.767816 ACAACCCACAAAGAACTCAATAC 57.232 39.130 0.00 0.00 0.00 1.89
2327 7244 5.197451 ACAACCCACAAAGAACTCAATACA 58.803 37.500 0.00 0.00 0.00 2.29
2328 7245 5.067283 ACAACCCACAAAGAACTCAATACAC 59.933 40.000 0.00 0.00 0.00 2.90
2329 7246 4.787551 ACCCACAAAGAACTCAATACACA 58.212 39.130 0.00 0.00 0.00 3.72
2330 7247 5.197451 ACCCACAAAGAACTCAATACACAA 58.803 37.500 0.00 0.00 0.00 3.33
2331 7248 5.654650 ACCCACAAAGAACTCAATACACAAA 59.345 36.000 0.00 0.00 0.00 2.83
2332 7249 6.153680 ACCCACAAAGAACTCAATACACAAAA 59.846 34.615 0.00 0.00 0.00 2.44
2333 7250 7.147742 ACCCACAAAGAACTCAATACACAAAAT 60.148 33.333 0.00 0.00 0.00 1.82
2334 7251 8.356657 CCCACAAAGAACTCAATACACAAAATA 58.643 33.333 0.00 0.00 0.00 1.40
2335 7252 9.398170 CCACAAAGAACTCAATACACAAAATAG 57.602 33.333 0.00 0.00 0.00 1.73
2343 7260 8.502161 ACTCAATACACAAAATAGAAAAACGC 57.498 30.769 0.00 0.00 0.00 4.84
2344 7261 7.593644 ACTCAATACACAAAATAGAAAAACGCC 59.406 33.333 0.00 0.00 0.00 5.68
2345 7262 6.864165 TCAATACACAAAATAGAAAAACGCCC 59.136 34.615 0.00 0.00 0.00 6.13
2346 7263 3.985008 ACACAAAATAGAAAAACGCCCC 58.015 40.909 0.00 0.00 0.00 5.80
2347 7264 3.385111 ACACAAAATAGAAAAACGCCCCA 59.615 39.130 0.00 0.00 0.00 4.96
2348 7265 3.738791 CACAAAATAGAAAAACGCCCCAC 59.261 43.478 0.00 0.00 0.00 4.61
2349 7266 3.639561 ACAAAATAGAAAAACGCCCCACT 59.360 39.130 0.00 0.00 0.00 4.00
2350 7267 4.100344 ACAAAATAGAAAAACGCCCCACTT 59.900 37.500 0.00 0.00 0.00 3.16
2351 7268 5.302313 ACAAAATAGAAAAACGCCCCACTTA 59.698 36.000 0.00 0.00 0.00 2.24
2352 7269 6.183360 ACAAAATAGAAAAACGCCCCACTTAA 60.183 34.615 0.00 0.00 0.00 1.85
2353 7270 6.408107 AAATAGAAAAACGCCCCACTTAAA 57.592 33.333 0.00 0.00 0.00 1.52
2354 7271 6.408107 AATAGAAAAACGCCCCACTTAAAA 57.592 33.333 0.00 0.00 0.00 1.52
2355 7272 4.739587 AGAAAAACGCCCCACTTAAAAA 57.260 36.364 0.00 0.00 0.00 1.94
2380 7297 7.175347 AGTCATATTAGACTTCACTGCTTCA 57.825 36.000 0.00 0.00 46.26 3.02
2381 7298 7.038659 AGTCATATTAGACTTCACTGCTTCAC 58.961 38.462 0.00 0.00 46.26 3.18
2382 7299 6.020281 GTCATATTAGACTTCACTGCTTCACG 60.020 42.308 0.00 0.00 35.65 4.35
2383 7300 4.521130 ATTAGACTTCACTGCTTCACGA 57.479 40.909 0.00 0.00 0.00 4.35
2384 7301 2.430546 AGACTTCACTGCTTCACGAG 57.569 50.000 0.00 0.00 0.00 4.18
2385 7302 1.957177 AGACTTCACTGCTTCACGAGA 59.043 47.619 0.00 0.00 0.00 4.04
2386 7303 2.030363 AGACTTCACTGCTTCACGAGAG 60.030 50.000 0.00 0.00 0.00 3.20
2387 7304 1.957177 ACTTCACTGCTTCACGAGAGA 59.043 47.619 0.00 0.00 0.00 3.10
2388 7305 2.287909 ACTTCACTGCTTCACGAGAGAC 60.288 50.000 0.00 0.00 0.00 3.36
2392 7309 2.182030 GCTTCACGAGAGACGGGG 59.818 66.667 0.00 0.00 46.40 5.73
2393 7310 2.341101 GCTTCACGAGAGACGGGGA 61.341 63.158 0.00 0.00 46.40 4.81
2394 7311 1.803943 CTTCACGAGAGACGGGGAG 59.196 63.158 0.00 0.00 44.94 4.30
2395 7312 1.377612 TTCACGAGAGACGGGGAGA 59.622 57.895 0.00 0.00 46.40 3.71
2396 7313 0.251033 TTCACGAGAGACGGGGAGAA 60.251 55.000 0.00 0.00 46.40 2.87
2397 7314 0.251033 TCACGAGAGACGGGGAGAAA 60.251 55.000 0.00 0.00 46.40 2.52
2398 7315 1.820483 TCACGAGAGACGGGGAGAAAA 60.820 52.381 0.00 0.00 46.40 2.29
2399 7316 3.420397 CGAGAGACGGGGAGAAAAC 57.580 57.895 0.00 0.00 38.46 2.43
2400 7317 0.601558 CGAGAGACGGGGAGAAAACA 59.398 55.000 0.00 0.00 38.46 2.83
2401 7318 1.669211 CGAGAGACGGGGAGAAAACAC 60.669 57.143 0.00 0.00 38.46 3.32
2402 7319 0.317479 AGAGACGGGGAGAAAACACG 59.683 55.000 0.00 0.00 0.00 4.49
2403 7320 0.316204 GAGACGGGGAGAAAACACGA 59.684 55.000 0.00 0.00 0.00 4.35
2404 7321 0.033090 AGACGGGGAGAAAACACGAC 59.967 55.000 0.00 0.00 0.00 4.34
2405 7322 0.249573 GACGGGGAGAAAACACGACA 60.250 55.000 0.00 0.00 0.00 4.35
2406 7323 0.531311 ACGGGGAGAAAACACGACAC 60.531 55.000 0.00 0.00 0.00 3.67
2407 7324 0.531090 CGGGGAGAAAACACGACACA 60.531 55.000 0.00 0.00 0.00 3.72
2408 7325 1.670791 GGGGAGAAAACACGACACAA 58.329 50.000 0.00 0.00 0.00 3.33
2409 7326 2.227194 GGGGAGAAAACACGACACAAT 58.773 47.619 0.00 0.00 0.00 2.71
2410 7327 2.031157 GGGGAGAAAACACGACACAATG 60.031 50.000 0.00 0.00 0.00 2.82
2411 7328 2.875933 GGGAGAAAACACGACACAATGA 59.124 45.455 0.00 0.00 0.00 2.57
2412 7329 3.303791 GGGAGAAAACACGACACAATGAC 60.304 47.826 0.00 0.00 0.00 3.06
2413 7330 3.311322 GGAGAAAACACGACACAATGACA 59.689 43.478 0.00 0.00 0.00 3.58
2414 7331 4.201871 GGAGAAAACACGACACAATGACAA 60.202 41.667 0.00 0.00 0.00 3.18
2415 7332 4.658071 AGAAAACACGACACAATGACAAC 58.342 39.130 0.00 0.00 0.00 3.32
2416 7333 3.414549 AAACACGACACAATGACAACC 57.585 42.857 0.00 0.00 0.00 3.77
2417 7334 2.031258 ACACGACACAATGACAACCA 57.969 45.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 1850 2.918345 GCTGCCAAACATGCCACGA 61.918 57.895 0.00 0.00 0.00 4.35
463 2007 7.938140 TTTTTCTTATCCTATGGAACCACAG 57.062 36.000 0.00 0.00 34.34 3.66
760 2305 3.928754 ACTGATGGGCCTTATCTCTACA 58.071 45.455 17.49 0.00 0.00 2.74
878 5763 5.705609 ATGGTGGTCAATGAACAGTAAAC 57.294 39.130 0.00 0.00 26.03 2.01
1110 5996 2.043852 GAGAGCGGGGACTCCTCA 60.044 66.667 0.00 0.00 37.39 3.86
1995 6912 6.379386 CGTCCTAATTCTCTTTTGTTTTCCC 58.621 40.000 0.00 0.00 0.00 3.97
1996 6913 5.856986 GCGTCCTAATTCTCTTTTGTTTTCC 59.143 40.000 0.00 0.00 0.00 3.13
1997 6914 5.564127 CGCGTCCTAATTCTCTTTTGTTTTC 59.436 40.000 0.00 0.00 0.00 2.29
1998 6915 5.449304 CGCGTCCTAATTCTCTTTTGTTTT 58.551 37.500 0.00 0.00 0.00 2.43
1999 6916 4.612939 GCGCGTCCTAATTCTCTTTTGTTT 60.613 41.667 8.43 0.00 0.00 2.83
2000 6917 3.120304 GCGCGTCCTAATTCTCTTTTGTT 60.120 43.478 8.43 0.00 0.00 2.83
2001 6918 2.415512 GCGCGTCCTAATTCTCTTTTGT 59.584 45.455 8.43 0.00 0.00 2.83
2002 6919 2.223044 GGCGCGTCCTAATTCTCTTTTG 60.223 50.000 8.43 0.00 0.00 2.44
2003 6920 2.007608 GGCGCGTCCTAATTCTCTTTT 58.992 47.619 8.43 0.00 0.00 2.27
2004 6921 1.653151 GGCGCGTCCTAATTCTCTTT 58.347 50.000 8.43 0.00 0.00 2.52
2005 6922 0.179081 GGGCGCGTCCTAATTCTCTT 60.179 55.000 25.46 0.00 34.39 2.85
2006 6923 1.442148 GGGCGCGTCCTAATTCTCT 59.558 57.895 25.46 0.00 34.39 3.10
2007 6924 1.594564 GGGGCGCGTCCTAATTCTC 60.595 63.158 31.31 6.97 34.39 2.87
2008 6925 2.029307 GAGGGGCGCGTCCTAATTCT 62.029 60.000 31.31 18.10 34.21 2.40
2009 6926 1.594564 GAGGGGCGCGTCCTAATTC 60.595 63.158 31.31 17.81 34.21 2.17
2010 6927 1.906105 TTGAGGGGCGCGTCCTAATT 61.906 55.000 31.31 13.08 34.21 1.40
2011 6928 1.906105 TTTGAGGGGCGCGTCCTAAT 61.906 55.000 31.31 16.35 34.21 1.73
2012 6929 2.585341 TTTGAGGGGCGCGTCCTAA 61.585 57.895 31.31 19.15 34.21 2.69
2013 6930 2.998480 TTTGAGGGGCGCGTCCTA 60.998 61.111 31.31 13.90 34.21 2.94
2014 6931 4.699522 GTTTGAGGGGCGCGTCCT 62.700 66.667 31.31 24.99 37.33 3.85
2019 6936 2.975799 TTGTCGTTTGAGGGGCGC 60.976 61.111 0.00 0.00 0.00 6.53
2020 6937 1.234615 ATGTTGTCGTTTGAGGGGCG 61.235 55.000 0.00 0.00 0.00 6.13
2021 6938 1.816074 TATGTTGTCGTTTGAGGGGC 58.184 50.000 0.00 0.00 0.00 5.80
2022 6939 4.515191 CCATATATGTTGTCGTTTGAGGGG 59.485 45.833 11.73 0.00 0.00 4.79
2023 6940 4.515191 CCCATATATGTTGTCGTTTGAGGG 59.485 45.833 11.73 0.00 0.00 4.30
2024 6941 4.515191 CCCCATATATGTTGTCGTTTGAGG 59.485 45.833 11.73 1.36 0.00 3.86
2025 6942 5.123227 ACCCCATATATGTTGTCGTTTGAG 58.877 41.667 11.73 0.00 0.00 3.02
2026 6943 5.105567 ACCCCATATATGTTGTCGTTTGA 57.894 39.130 11.73 0.00 0.00 2.69
2027 6944 6.485313 ACATACCCCATATATGTTGTCGTTTG 59.515 38.462 11.73 7.52 39.69 2.93
2028 6945 6.485313 CACATACCCCATATATGTTGTCGTTT 59.515 38.462 11.73 0.00 40.51 3.60
2029 6946 5.995282 CACATACCCCATATATGTTGTCGTT 59.005 40.000 11.73 0.00 40.51 3.85
2030 6947 5.305902 TCACATACCCCATATATGTTGTCGT 59.694 40.000 11.73 6.53 40.51 4.34
2031 6948 5.789521 TCACATACCCCATATATGTTGTCG 58.210 41.667 11.73 6.01 40.51 4.35
2032 6949 8.458573 TTTTCACATACCCCATATATGTTGTC 57.541 34.615 11.73 0.00 40.51 3.18
2033 6950 8.278639 TCTTTTCACATACCCCATATATGTTGT 58.721 33.333 11.73 10.06 40.51 3.32
2034 6951 8.690203 TCTTTTCACATACCCCATATATGTTG 57.310 34.615 11.73 4.81 40.51 3.33
2035 6952 9.707957 TTTCTTTTCACATACCCCATATATGTT 57.292 29.630 11.73 0.00 40.51 2.71
2036 6953 9.131791 GTTTCTTTTCACATACCCCATATATGT 57.868 33.333 11.73 0.00 42.68 2.29
2037 6954 8.289618 CGTTTCTTTTCACATACCCCATATATG 58.710 37.037 5.68 5.68 36.32 1.78
2038 6955 7.040686 GCGTTTCTTTTCACATACCCCATATAT 60.041 37.037 0.00 0.00 0.00 0.86
2039 6956 6.261381 GCGTTTCTTTTCACATACCCCATATA 59.739 38.462 0.00 0.00 0.00 0.86
2040 6957 5.067283 GCGTTTCTTTTCACATACCCCATAT 59.933 40.000 0.00 0.00 0.00 1.78
2041 6958 4.396790 GCGTTTCTTTTCACATACCCCATA 59.603 41.667 0.00 0.00 0.00 2.74
2042 6959 3.192633 GCGTTTCTTTTCACATACCCCAT 59.807 43.478 0.00 0.00 0.00 4.00
2043 6960 2.554893 GCGTTTCTTTTCACATACCCCA 59.445 45.455 0.00 0.00 0.00 4.96
2044 6961 2.413634 CGCGTTTCTTTTCACATACCCC 60.414 50.000 0.00 0.00 0.00 4.95
2045 6962 2.481185 TCGCGTTTCTTTTCACATACCC 59.519 45.455 5.77 0.00 0.00 3.69
2046 6963 3.430895 TCTCGCGTTTCTTTTCACATACC 59.569 43.478 5.77 0.00 0.00 2.73
2047 6964 4.640805 TCTCGCGTTTCTTTTCACATAC 57.359 40.909 5.77 0.00 0.00 2.39
2048 6965 4.508492 TGTTCTCGCGTTTCTTTTCACATA 59.492 37.500 5.77 0.00 0.00 2.29
2049 6966 3.311322 TGTTCTCGCGTTTCTTTTCACAT 59.689 39.130 5.77 0.00 0.00 3.21
2050 6967 2.673862 TGTTCTCGCGTTTCTTTTCACA 59.326 40.909 5.77 0.00 0.00 3.58
2051 6968 3.313274 TGTTCTCGCGTTTCTTTTCAC 57.687 42.857 5.77 0.00 0.00 3.18
2052 6969 3.787476 GCTTGTTCTCGCGTTTCTTTTCA 60.787 43.478 5.77 0.00 0.00 2.69
2053 6970 2.714480 GCTTGTTCTCGCGTTTCTTTTC 59.286 45.455 5.77 0.00 0.00 2.29
2054 6971 2.540973 GGCTTGTTCTCGCGTTTCTTTT 60.541 45.455 5.77 0.00 0.00 2.27
2055 6972 1.002792 GGCTTGTTCTCGCGTTTCTTT 60.003 47.619 5.77 0.00 0.00 2.52
2056 6973 0.586802 GGCTTGTTCTCGCGTTTCTT 59.413 50.000 5.77 0.00 0.00 2.52
2057 6974 0.531974 TGGCTTGTTCTCGCGTTTCT 60.532 50.000 5.77 0.00 0.00 2.52
2058 6975 0.306533 TTGGCTTGTTCTCGCGTTTC 59.693 50.000 5.77 0.00 0.00 2.78
2059 6976 0.028902 GTTGGCTTGTTCTCGCGTTT 59.971 50.000 5.77 0.00 0.00 3.60
2060 6977 1.092921 TGTTGGCTTGTTCTCGCGTT 61.093 50.000 5.77 0.00 0.00 4.84
2061 6978 1.522806 TGTTGGCTTGTTCTCGCGT 60.523 52.632 5.77 0.00 0.00 6.01
2062 6979 1.082756 GTGTTGGCTTGTTCTCGCG 60.083 57.895 0.00 0.00 0.00 5.87
2063 6980 0.380378 TTGTGTTGGCTTGTTCTCGC 59.620 50.000 0.00 0.00 0.00 5.03
2064 6981 2.842208 TTTGTGTTGGCTTGTTCTCG 57.158 45.000 0.00 0.00 0.00 4.04
2065 6982 3.843999 TGTTTTGTGTTGGCTTGTTCTC 58.156 40.909 0.00 0.00 0.00 2.87
2066 6983 3.951775 TGTTTTGTGTTGGCTTGTTCT 57.048 38.095 0.00 0.00 0.00 3.01
2067 6984 4.999751 TTTGTTTTGTGTTGGCTTGTTC 57.000 36.364 0.00 0.00 0.00 3.18
2068 6985 4.319118 CGTTTTGTTTTGTGTTGGCTTGTT 60.319 37.500 0.00 0.00 0.00 2.83
2069 6986 3.185391 CGTTTTGTTTTGTGTTGGCTTGT 59.815 39.130 0.00 0.00 0.00 3.16
2070 6987 3.424170 CCGTTTTGTTTTGTGTTGGCTTG 60.424 43.478 0.00 0.00 0.00 4.01
2071 6988 2.739379 CCGTTTTGTTTTGTGTTGGCTT 59.261 40.909 0.00 0.00 0.00 4.35
2072 6989 2.342179 CCGTTTTGTTTTGTGTTGGCT 58.658 42.857 0.00 0.00 0.00 4.75
2073 6990 1.395262 CCCGTTTTGTTTTGTGTTGGC 59.605 47.619 0.00 0.00 0.00 4.52
2074 6991 2.668945 GTCCCGTTTTGTTTTGTGTTGG 59.331 45.455 0.00 0.00 0.00 3.77
2075 6992 3.318017 TGTCCCGTTTTGTTTTGTGTTG 58.682 40.909 0.00 0.00 0.00 3.33
2076 6993 3.662247 TGTCCCGTTTTGTTTTGTGTT 57.338 38.095 0.00 0.00 0.00 3.32
2077 6994 3.662247 TTGTCCCGTTTTGTTTTGTGT 57.338 38.095 0.00 0.00 0.00 3.72
2078 6995 4.238514 TCTTTGTCCCGTTTTGTTTTGTG 58.761 39.130 0.00 0.00 0.00 3.33
2079 6996 4.522722 TCTTTGTCCCGTTTTGTTTTGT 57.477 36.364 0.00 0.00 0.00 2.83
2080 6997 5.164954 TCTTCTTTGTCCCGTTTTGTTTTG 58.835 37.500 0.00 0.00 0.00 2.44
2081 6998 5.394224 TCTTCTTTGTCCCGTTTTGTTTT 57.606 34.783 0.00 0.00 0.00 2.43
2082 6999 4.142249 CCTCTTCTTTGTCCCGTTTTGTTT 60.142 41.667 0.00 0.00 0.00 2.83
2083 7000 3.380320 CCTCTTCTTTGTCCCGTTTTGTT 59.620 43.478 0.00 0.00 0.00 2.83
2084 7001 2.949644 CCTCTTCTTTGTCCCGTTTTGT 59.050 45.455 0.00 0.00 0.00 2.83
2085 7002 2.287608 GCCTCTTCTTTGTCCCGTTTTG 60.288 50.000 0.00 0.00 0.00 2.44
2086 7003 1.954382 GCCTCTTCTTTGTCCCGTTTT 59.046 47.619 0.00 0.00 0.00 2.43
2087 7004 1.605753 GCCTCTTCTTTGTCCCGTTT 58.394 50.000 0.00 0.00 0.00 3.60
2088 7005 0.602905 CGCCTCTTCTTTGTCCCGTT 60.603 55.000 0.00 0.00 0.00 4.44
2089 7006 1.004918 CGCCTCTTCTTTGTCCCGT 60.005 57.895 0.00 0.00 0.00 5.28
2090 7007 0.320421 TTCGCCTCTTCTTTGTCCCG 60.320 55.000 0.00 0.00 0.00 5.14
2091 7008 1.740025 CATTCGCCTCTTCTTTGTCCC 59.260 52.381 0.00 0.00 0.00 4.46
2092 7009 2.675348 CTCATTCGCCTCTTCTTTGTCC 59.325 50.000 0.00 0.00 0.00 4.02
2093 7010 2.095053 GCTCATTCGCCTCTTCTTTGTC 59.905 50.000 0.00 0.00 0.00 3.18
2094 7011 2.079925 GCTCATTCGCCTCTTCTTTGT 58.920 47.619 0.00 0.00 0.00 2.83
2095 7012 2.095532 CAGCTCATTCGCCTCTTCTTTG 59.904 50.000 0.00 0.00 0.00 2.77
2096 7013 2.027745 TCAGCTCATTCGCCTCTTCTTT 60.028 45.455 0.00 0.00 0.00 2.52
2097 7014 1.552337 TCAGCTCATTCGCCTCTTCTT 59.448 47.619 0.00 0.00 0.00 2.52
2098 7015 1.136695 CTCAGCTCATTCGCCTCTTCT 59.863 52.381 0.00 0.00 0.00 2.85
2099 7016 1.135915 TCTCAGCTCATTCGCCTCTTC 59.864 52.381 0.00 0.00 0.00 2.87
2100 7017 1.134848 GTCTCAGCTCATTCGCCTCTT 60.135 52.381 0.00 0.00 0.00 2.85
2101 7018 0.459489 GTCTCAGCTCATTCGCCTCT 59.541 55.000 0.00 0.00 0.00 3.69
2102 7019 0.869454 CGTCTCAGCTCATTCGCCTC 60.869 60.000 0.00 0.00 0.00 4.70
2103 7020 1.140589 CGTCTCAGCTCATTCGCCT 59.859 57.895 0.00 0.00 0.00 5.52
2104 7021 0.869454 CTCGTCTCAGCTCATTCGCC 60.869 60.000 0.00 0.00 0.00 5.54
2105 7022 1.478622 GCTCGTCTCAGCTCATTCGC 61.479 60.000 0.00 0.00 36.38 4.70
2106 7023 0.179153 TGCTCGTCTCAGCTCATTCG 60.179 55.000 0.00 0.00 40.39 3.34
2107 7024 1.276415 GTGCTCGTCTCAGCTCATTC 58.724 55.000 0.00 0.00 40.39 2.67
2108 7025 0.457509 CGTGCTCGTCTCAGCTCATT 60.458 55.000 0.00 0.00 40.39 2.57
2109 7026 1.138459 CGTGCTCGTCTCAGCTCAT 59.862 57.895 0.00 0.00 40.39 2.90
2110 7027 2.563427 CGTGCTCGTCTCAGCTCA 59.437 61.111 0.00 0.00 40.39 4.26
2111 7028 2.878520 GCGTGCTCGTCTCAGCTC 60.879 66.667 10.18 0.00 40.39 4.09
2112 7029 4.427661 GGCGTGCTCGTCTCAGCT 62.428 66.667 10.18 0.00 40.39 4.24
2118 7035 1.416813 CTTGATCAGGCGTGCTCGTC 61.417 60.000 4.29 4.29 42.44 4.20
2119 7036 1.446792 CTTGATCAGGCGTGCTCGT 60.447 57.895 10.18 0.00 39.49 4.18
2120 7037 1.016130 AACTTGATCAGGCGTGCTCG 61.016 55.000 4.46 3.31 40.37 5.03
2121 7038 1.135859 CAAACTTGATCAGGCGTGCTC 60.136 52.381 4.46 2.03 0.00 4.26
2122 7039 0.877071 CAAACTTGATCAGGCGTGCT 59.123 50.000 4.46 0.00 0.00 4.40
2123 7040 0.593128 ACAAACTTGATCAGGCGTGC 59.407 50.000 4.46 0.00 0.00 5.34
2124 7041 1.664016 GCACAAACTTGATCAGGCGTG 60.664 52.381 14.56 14.56 0.00 5.34
2125 7042 0.593128 GCACAAACTTGATCAGGCGT 59.407 50.000 4.46 0.00 0.00 5.68
2126 7043 0.453282 CGCACAAACTTGATCAGGCG 60.453 55.000 4.46 5.43 37.17 5.52
2127 7044 0.874390 TCGCACAAACTTGATCAGGC 59.126 50.000 4.46 0.00 0.00 4.85
2128 7045 2.350772 GGTTCGCACAAACTTGATCAGG 60.351 50.000 2.78 2.78 0.00 3.86
2129 7046 2.290367 TGGTTCGCACAAACTTGATCAG 59.710 45.455 0.00 0.00 0.00 2.90
2130 7047 2.293170 TGGTTCGCACAAACTTGATCA 58.707 42.857 0.00 0.00 0.00 2.92
2131 7048 3.559238 ATGGTTCGCACAAACTTGATC 57.441 42.857 0.00 0.00 0.00 2.92
2132 7049 5.446143 TTAATGGTTCGCACAAACTTGAT 57.554 34.783 0.00 0.00 0.00 2.57
2133 7050 4.902443 TTAATGGTTCGCACAAACTTGA 57.098 36.364 0.00 0.00 0.00 3.02
2134 7051 4.085107 GCTTTAATGGTTCGCACAAACTTG 60.085 41.667 0.00 0.00 0.00 3.16
2135 7052 4.048504 GCTTTAATGGTTCGCACAAACTT 58.951 39.130 0.00 0.00 0.00 2.66
2136 7053 3.067461 TGCTTTAATGGTTCGCACAAACT 59.933 39.130 0.00 0.00 0.00 2.66
2137 7054 3.376540 TGCTTTAATGGTTCGCACAAAC 58.623 40.909 0.00 0.00 0.00 2.93
2138 7055 3.717400 TGCTTTAATGGTTCGCACAAA 57.283 38.095 0.00 0.00 0.00 2.83
2139 7056 3.717400 TTGCTTTAATGGTTCGCACAA 57.283 38.095 0.00 0.00 0.00 3.33
2140 7057 3.376540 GTTTGCTTTAATGGTTCGCACA 58.623 40.909 0.00 0.00 0.00 4.57
2141 7058 2.729360 GGTTTGCTTTAATGGTTCGCAC 59.271 45.455 0.00 0.00 0.00 5.34
2142 7059 2.362397 TGGTTTGCTTTAATGGTTCGCA 59.638 40.909 0.00 0.00 0.00 5.10
2143 7060 3.019933 TGGTTTGCTTTAATGGTTCGC 57.980 42.857 0.00 0.00 0.00 4.70
2144 7061 4.323336 CGATTGGTTTGCTTTAATGGTTCG 59.677 41.667 0.00 0.00 0.00 3.95
2145 7062 4.625311 CCGATTGGTTTGCTTTAATGGTTC 59.375 41.667 0.00 0.00 0.00 3.62
2146 7063 4.565022 CCGATTGGTTTGCTTTAATGGTT 58.435 39.130 0.00 0.00 0.00 3.67
2147 7064 4.186856 CCGATTGGTTTGCTTTAATGGT 57.813 40.909 0.00 0.00 0.00 3.55
2162 7079 6.455113 CGTGAAAGTCTATAACCAACCGATTG 60.455 42.308 0.00 0.00 35.40 2.67
2163 7080 5.579511 CGTGAAAGTCTATAACCAACCGATT 59.420 40.000 0.00 0.00 0.00 3.34
2164 7081 5.105635 TCGTGAAAGTCTATAACCAACCGAT 60.106 40.000 0.00 0.00 0.00 4.18
2165 7082 4.218200 TCGTGAAAGTCTATAACCAACCGA 59.782 41.667 0.00 0.00 0.00 4.69
2166 7083 4.487948 TCGTGAAAGTCTATAACCAACCG 58.512 43.478 0.00 0.00 0.00 4.44
2167 7084 6.161381 TCTTCGTGAAAGTCTATAACCAACC 58.839 40.000 0.00 0.00 36.31 3.77
2168 7085 7.544566 TCATCTTCGTGAAAGTCTATAACCAAC 59.455 37.037 0.00 0.00 36.31 3.77
2169 7086 7.608153 TCATCTTCGTGAAAGTCTATAACCAA 58.392 34.615 0.00 0.00 36.31 3.67
2170 7087 7.122204 TCTCATCTTCGTGAAAGTCTATAACCA 59.878 37.037 0.00 0.00 36.31 3.67
2171 7088 7.481642 TCTCATCTTCGTGAAAGTCTATAACC 58.518 38.462 0.00 0.00 36.31 2.85
2172 7089 9.522804 AATCTCATCTTCGTGAAAGTCTATAAC 57.477 33.333 0.00 0.00 36.31 1.89
2175 7092 9.743057 CTAAATCTCATCTTCGTGAAAGTCTAT 57.257 33.333 0.00 0.00 36.31 1.98
2176 7093 7.702772 GCTAAATCTCATCTTCGTGAAAGTCTA 59.297 37.037 0.00 0.00 36.31 2.59
2177 7094 6.533367 GCTAAATCTCATCTTCGTGAAAGTCT 59.467 38.462 0.00 0.00 36.31 3.24
2178 7095 6.311445 TGCTAAATCTCATCTTCGTGAAAGTC 59.689 38.462 0.00 0.00 36.31 3.01
2179 7096 6.166279 TGCTAAATCTCATCTTCGTGAAAGT 58.834 36.000 0.00 0.00 36.31 2.66
2180 7097 6.653273 TGCTAAATCTCATCTTCGTGAAAG 57.347 37.500 0.00 0.00 36.22 2.62
2181 7098 7.433708 TTTGCTAAATCTCATCTTCGTGAAA 57.566 32.000 0.00 0.00 0.00 2.69
2182 7099 7.201644 GGATTTGCTAAATCTCATCTTCGTGAA 60.202 37.037 16.14 0.00 45.17 3.18
2183 7100 6.258727 GGATTTGCTAAATCTCATCTTCGTGA 59.741 38.462 16.14 0.00 45.17 4.35
2184 7101 6.425504 GGATTTGCTAAATCTCATCTTCGTG 58.574 40.000 16.14 0.00 45.17 4.35
2185 7102 5.235186 CGGATTTGCTAAATCTCATCTTCGT 59.765 40.000 16.14 0.00 45.17 3.85
2186 7103 5.463392 TCGGATTTGCTAAATCTCATCTTCG 59.537 40.000 16.14 11.43 45.17 3.79
2187 7104 6.851222 TCGGATTTGCTAAATCTCATCTTC 57.149 37.500 16.14 3.43 45.17 2.87
2188 7105 7.201767 CCTTTCGGATTTGCTAAATCTCATCTT 60.202 37.037 16.14 0.00 45.17 2.40
2189 7106 6.261826 CCTTTCGGATTTGCTAAATCTCATCT 59.738 38.462 16.14 0.00 45.17 2.90
2190 7107 6.260936 TCCTTTCGGATTTGCTAAATCTCATC 59.739 38.462 16.14 4.64 45.17 2.92
2191 7108 6.122277 TCCTTTCGGATTTGCTAAATCTCAT 58.878 36.000 16.14 0.00 45.17 2.90
2192 7109 5.496556 TCCTTTCGGATTTGCTAAATCTCA 58.503 37.500 16.14 5.75 45.17 3.27
2193 7110 6.436843 TTCCTTTCGGATTTGCTAAATCTC 57.563 37.500 16.14 9.14 45.17 2.75
2194 7111 6.834168 TTTCCTTTCGGATTTGCTAAATCT 57.166 33.333 16.14 0.00 45.17 2.40
2195 7112 7.883229 TTTTTCCTTTCGGATTTGCTAAATC 57.117 32.000 11.08 11.08 45.12 2.17
2217 7134 6.213600 TGGGTAGCTAGAGAAGAGATGTTTTT 59.786 38.462 0.00 0.00 0.00 1.94
2218 7135 5.721960 TGGGTAGCTAGAGAAGAGATGTTTT 59.278 40.000 0.00 0.00 0.00 2.43
2219 7136 5.273208 TGGGTAGCTAGAGAAGAGATGTTT 58.727 41.667 0.00 0.00 0.00 2.83
2220 7137 4.873010 TGGGTAGCTAGAGAAGAGATGTT 58.127 43.478 0.00 0.00 0.00 2.71
2221 7138 4.079443 ACTGGGTAGCTAGAGAAGAGATGT 60.079 45.833 12.67 0.00 0.00 3.06
2222 7139 4.469657 ACTGGGTAGCTAGAGAAGAGATG 58.530 47.826 12.67 0.00 0.00 2.90
2223 7140 4.725490 GACTGGGTAGCTAGAGAAGAGAT 58.275 47.826 12.67 0.00 0.00 2.75
2224 7141 3.432467 CGACTGGGTAGCTAGAGAAGAGA 60.432 52.174 12.67 0.00 0.00 3.10
2225 7142 2.875933 CGACTGGGTAGCTAGAGAAGAG 59.124 54.545 12.67 0.00 0.00 2.85
2226 7143 2.504585 TCGACTGGGTAGCTAGAGAAGA 59.495 50.000 12.67 3.02 0.00 2.87
2227 7144 2.920524 TCGACTGGGTAGCTAGAGAAG 58.079 52.381 12.67 0.77 0.00 2.85
2228 7145 3.361281 TTCGACTGGGTAGCTAGAGAA 57.639 47.619 12.67 13.11 0.00 2.87
2229 7146 3.118000 TGATTCGACTGGGTAGCTAGAGA 60.118 47.826 12.67 8.03 0.00 3.10
2230 7147 3.215151 TGATTCGACTGGGTAGCTAGAG 58.785 50.000 12.67 5.83 0.00 2.43
2231 7148 3.292492 TGATTCGACTGGGTAGCTAGA 57.708 47.619 12.67 0.00 0.00 2.43
2232 7149 4.386867 TTTGATTCGACTGGGTAGCTAG 57.613 45.455 3.46 3.46 0.00 3.42
2233 7150 4.811969 TTTTGATTCGACTGGGTAGCTA 57.188 40.909 0.00 0.00 0.00 3.32
2234 7151 3.695830 TTTTGATTCGACTGGGTAGCT 57.304 42.857 0.00 0.00 0.00 3.32
2235 7152 6.431198 TTTATTTTGATTCGACTGGGTAGC 57.569 37.500 0.00 0.00 0.00 3.58
2236 7153 8.208718 TCATTTATTTTGATTCGACTGGGTAG 57.791 34.615 0.00 0.00 0.00 3.18
2237 7154 8.568676 TTCATTTATTTTGATTCGACTGGGTA 57.431 30.769 0.00 0.00 0.00 3.69
2238 7155 7.461182 TTCATTTATTTTGATTCGACTGGGT 57.539 32.000 0.00 0.00 0.00 4.51
2239 7156 8.647226 GTTTTCATTTATTTTGATTCGACTGGG 58.353 33.333 0.00 0.00 0.00 4.45
2240 7157 9.190858 TGTTTTCATTTATTTTGATTCGACTGG 57.809 29.630 0.00 0.00 0.00 4.00
2257 7174 9.918630 CATGTCCTTTTATTCTCTGTTTTCATT 57.081 29.630 0.00 0.00 0.00 2.57
2258 7175 8.031277 GCATGTCCTTTTATTCTCTGTTTTCAT 58.969 33.333 0.00 0.00 0.00 2.57
2259 7176 7.014134 TGCATGTCCTTTTATTCTCTGTTTTCA 59.986 33.333 0.00 0.00 0.00 2.69
2260 7177 7.370383 TGCATGTCCTTTTATTCTCTGTTTTC 58.630 34.615 0.00 0.00 0.00 2.29
2261 7178 7.288810 TGCATGTCCTTTTATTCTCTGTTTT 57.711 32.000 0.00 0.00 0.00 2.43
2262 7179 6.571150 GCTGCATGTCCTTTTATTCTCTGTTT 60.571 38.462 0.00 0.00 0.00 2.83
2263 7180 5.105997 GCTGCATGTCCTTTTATTCTCTGTT 60.106 40.000 0.00 0.00 0.00 3.16
2264 7181 4.397417 GCTGCATGTCCTTTTATTCTCTGT 59.603 41.667 0.00 0.00 0.00 3.41
2265 7182 4.201990 GGCTGCATGTCCTTTTATTCTCTG 60.202 45.833 0.50 0.00 0.00 3.35
2266 7183 3.950395 GGCTGCATGTCCTTTTATTCTCT 59.050 43.478 0.50 0.00 0.00 3.10
2267 7184 3.067320 GGGCTGCATGTCCTTTTATTCTC 59.933 47.826 0.50 0.00 37.49 2.87
2268 7185 3.026694 GGGCTGCATGTCCTTTTATTCT 58.973 45.455 0.50 0.00 37.49 2.40
2269 7186 3.443099 GGGCTGCATGTCCTTTTATTC 57.557 47.619 0.50 0.00 37.49 1.75
2277 7194 0.250640 CTATGGAGGGCTGCATGTCC 60.251 60.000 0.50 4.59 41.77 4.02
2278 7195 0.761187 TCTATGGAGGGCTGCATGTC 59.239 55.000 0.50 0.00 41.77 3.06
2279 7196 1.216064 TTCTATGGAGGGCTGCATGT 58.784 50.000 0.50 0.00 41.77 3.21
2280 7197 2.581216 ATTCTATGGAGGGCTGCATG 57.419 50.000 0.50 0.00 41.77 4.06
2281 7198 3.654806 AGTTATTCTATGGAGGGCTGCAT 59.345 43.478 0.50 0.00 44.01 3.96
2282 7199 3.048600 AGTTATTCTATGGAGGGCTGCA 58.951 45.455 0.50 0.00 34.81 4.41
2283 7200 3.778954 AGTTATTCTATGGAGGGCTGC 57.221 47.619 0.00 0.00 0.00 5.25
2284 7201 5.808366 TGTAGTTATTCTATGGAGGGCTG 57.192 43.478 0.00 0.00 0.00 4.85
2285 7202 5.071923 GGTTGTAGTTATTCTATGGAGGGCT 59.928 44.000 0.00 0.00 0.00 5.19
2286 7203 5.306394 GGTTGTAGTTATTCTATGGAGGGC 58.694 45.833 0.00 0.00 0.00 5.19
2287 7204 5.368523 TGGGTTGTAGTTATTCTATGGAGGG 59.631 44.000 0.00 0.00 0.00 4.30
2288 7205 6.126883 TGTGGGTTGTAGTTATTCTATGGAGG 60.127 42.308 0.00 0.00 0.00 4.30
2289 7206 6.884832 TGTGGGTTGTAGTTATTCTATGGAG 58.115 40.000 0.00 0.00 0.00 3.86
2290 7207 6.877668 TGTGGGTTGTAGTTATTCTATGGA 57.122 37.500 0.00 0.00 0.00 3.41
2291 7208 7.827236 TCTTTGTGGGTTGTAGTTATTCTATGG 59.173 37.037 0.00 0.00 0.00 2.74
2292 7209 8.786826 TCTTTGTGGGTTGTAGTTATTCTATG 57.213 34.615 0.00 0.00 0.00 2.23
2293 7210 9.227777 GTTCTTTGTGGGTTGTAGTTATTCTAT 57.772 33.333 0.00 0.00 0.00 1.98
2294 7211 8.434392 AGTTCTTTGTGGGTTGTAGTTATTCTA 58.566 33.333 0.00 0.00 0.00 2.10
2295 7212 7.287810 AGTTCTTTGTGGGTTGTAGTTATTCT 58.712 34.615 0.00 0.00 0.00 2.40
2296 7213 7.227910 TGAGTTCTTTGTGGGTTGTAGTTATTC 59.772 37.037 0.00 0.00 0.00 1.75
2297 7214 7.057894 TGAGTTCTTTGTGGGTTGTAGTTATT 58.942 34.615 0.00 0.00 0.00 1.40
2298 7215 6.597562 TGAGTTCTTTGTGGGTTGTAGTTAT 58.402 36.000 0.00 0.00 0.00 1.89
2299 7216 5.991861 TGAGTTCTTTGTGGGTTGTAGTTA 58.008 37.500 0.00 0.00 0.00 2.24
2300 7217 4.850680 TGAGTTCTTTGTGGGTTGTAGTT 58.149 39.130 0.00 0.00 0.00 2.24
2301 7218 4.497291 TGAGTTCTTTGTGGGTTGTAGT 57.503 40.909 0.00 0.00 0.00 2.73
2302 7219 6.485313 TGTATTGAGTTCTTTGTGGGTTGTAG 59.515 38.462 0.00 0.00 0.00 2.74
2303 7220 6.261381 GTGTATTGAGTTCTTTGTGGGTTGTA 59.739 38.462 0.00 0.00 0.00 2.41
2304 7221 5.067283 GTGTATTGAGTTCTTTGTGGGTTGT 59.933 40.000 0.00 0.00 0.00 3.32
2305 7222 5.067153 TGTGTATTGAGTTCTTTGTGGGTTG 59.933 40.000 0.00 0.00 0.00 3.77
2306 7223 5.197451 TGTGTATTGAGTTCTTTGTGGGTT 58.803 37.500 0.00 0.00 0.00 4.11
2307 7224 4.787551 TGTGTATTGAGTTCTTTGTGGGT 58.212 39.130 0.00 0.00 0.00 4.51
2308 7225 5.766150 TTGTGTATTGAGTTCTTTGTGGG 57.234 39.130 0.00 0.00 0.00 4.61
2309 7226 9.398170 CTATTTTGTGTATTGAGTTCTTTGTGG 57.602 33.333 0.00 0.00 0.00 4.17
2317 7234 8.964150 GCGTTTTTCTATTTTGTGTATTGAGTT 58.036 29.630 0.00 0.00 0.00 3.01
2318 7235 7.593644 GGCGTTTTTCTATTTTGTGTATTGAGT 59.406 33.333 0.00 0.00 0.00 3.41
2319 7236 7.061789 GGGCGTTTTTCTATTTTGTGTATTGAG 59.938 37.037 0.00 0.00 0.00 3.02
2320 7237 6.864165 GGGCGTTTTTCTATTTTGTGTATTGA 59.136 34.615 0.00 0.00 0.00 2.57
2321 7238 6.090223 GGGGCGTTTTTCTATTTTGTGTATTG 59.910 38.462 0.00 0.00 0.00 1.90
2322 7239 6.160684 GGGGCGTTTTTCTATTTTGTGTATT 58.839 36.000 0.00 0.00 0.00 1.89
2323 7240 5.244178 TGGGGCGTTTTTCTATTTTGTGTAT 59.756 36.000 0.00 0.00 0.00 2.29
2324 7241 4.583489 TGGGGCGTTTTTCTATTTTGTGTA 59.417 37.500 0.00 0.00 0.00 2.90
2325 7242 3.385111 TGGGGCGTTTTTCTATTTTGTGT 59.615 39.130 0.00 0.00 0.00 3.72
2326 7243 3.738791 GTGGGGCGTTTTTCTATTTTGTG 59.261 43.478 0.00 0.00 0.00 3.33
2327 7244 3.639561 AGTGGGGCGTTTTTCTATTTTGT 59.360 39.130 0.00 0.00 0.00 2.83
2328 7245 4.251543 AGTGGGGCGTTTTTCTATTTTG 57.748 40.909 0.00 0.00 0.00 2.44
2329 7246 4.948341 AAGTGGGGCGTTTTTCTATTTT 57.052 36.364 0.00 0.00 0.00 1.82
2330 7247 6.408107 TTTAAGTGGGGCGTTTTTCTATTT 57.592 33.333 0.00 0.00 0.00 1.40
2331 7248 6.408107 TTTTAAGTGGGGCGTTTTTCTATT 57.592 33.333 0.00 0.00 0.00 1.73
2332 7249 6.408107 TTTTTAAGTGGGGCGTTTTTCTAT 57.592 33.333 0.00 0.00 0.00 1.98
2333 7250 5.848833 TTTTTAAGTGGGGCGTTTTTCTA 57.151 34.783 0.00 0.00 0.00 2.10
2334 7251 4.739587 TTTTTAAGTGGGGCGTTTTTCT 57.260 36.364 0.00 0.00 0.00 2.52
2357 7274 6.020281 CGTGAAGCAGTGAAGTCTAATATGAC 60.020 42.308 0.00 0.00 37.23 3.06
2358 7275 6.036470 CGTGAAGCAGTGAAGTCTAATATGA 58.964 40.000 0.00 0.00 0.00 2.15
2359 7276 6.036470 TCGTGAAGCAGTGAAGTCTAATATG 58.964 40.000 0.00 0.00 0.00 1.78
2360 7277 6.095580 TCTCGTGAAGCAGTGAAGTCTAATAT 59.904 38.462 0.00 0.00 0.00 1.28
2361 7278 5.414765 TCTCGTGAAGCAGTGAAGTCTAATA 59.585 40.000 0.00 0.00 0.00 0.98
2362 7279 4.218635 TCTCGTGAAGCAGTGAAGTCTAAT 59.781 41.667 0.00 0.00 0.00 1.73
2363 7280 3.568430 TCTCGTGAAGCAGTGAAGTCTAA 59.432 43.478 0.00 0.00 0.00 2.10
2364 7281 3.146847 TCTCGTGAAGCAGTGAAGTCTA 58.853 45.455 0.00 0.00 0.00 2.59
2365 7282 1.957177 TCTCGTGAAGCAGTGAAGTCT 59.043 47.619 0.00 0.00 0.00 3.24
2366 7283 2.030717 TCTCTCGTGAAGCAGTGAAGTC 60.031 50.000 0.00 0.00 0.00 3.01
2367 7284 1.957177 TCTCTCGTGAAGCAGTGAAGT 59.043 47.619 0.00 0.00 0.00 3.01
2368 7285 2.323959 GTCTCTCGTGAAGCAGTGAAG 58.676 52.381 0.00 0.00 0.00 3.02
2369 7286 1.335051 CGTCTCTCGTGAAGCAGTGAA 60.335 52.381 0.00 0.00 34.52 3.18
2370 7287 0.238553 CGTCTCTCGTGAAGCAGTGA 59.761 55.000 0.00 0.00 34.52 3.41
2371 7288 0.730834 CCGTCTCTCGTGAAGCAGTG 60.731 60.000 0.00 0.00 37.94 3.66
2372 7289 1.581954 CCGTCTCTCGTGAAGCAGT 59.418 57.895 0.00 0.00 37.94 4.40
2373 7290 1.153939 CCCGTCTCTCGTGAAGCAG 60.154 63.158 0.00 0.00 37.94 4.24
2374 7291 2.636412 CCCCGTCTCTCGTGAAGCA 61.636 63.158 0.00 0.00 37.94 3.91
2375 7292 2.182030 CCCCGTCTCTCGTGAAGC 59.818 66.667 0.00 0.00 37.94 3.86
2376 7293 0.677098 TCTCCCCGTCTCTCGTGAAG 60.677 60.000 0.00 0.00 37.94 3.02
2377 7294 0.251033 TTCTCCCCGTCTCTCGTGAA 60.251 55.000 0.00 0.00 37.94 3.18
2378 7295 0.251033 TTTCTCCCCGTCTCTCGTGA 60.251 55.000 0.00 0.00 37.94 4.35
2379 7296 0.601558 TTTTCTCCCCGTCTCTCGTG 59.398 55.000 0.00 0.00 37.94 4.35
2380 7297 0.602060 GTTTTCTCCCCGTCTCTCGT 59.398 55.000 0.00 0.00 37.94 4.18
2381 7298 0.601558 TGTTTTCTCCCCGTCTCTCG 59.398 55.000 0.00 0.00 39.52 4.04
2382 7299 1.669211 CGTGTTTTCTCCCCGTCTCTC 60.669 57.143 0.00 0.00 0.00 3.20
2383 7300 0.317479 CGTGTTTTCTCCCCGTCTCT 59.683 55.000 0.00 0.00 0.00 3.10
2384 7301 0.316204 TCGTGTTTTCTCCCCGTCTC 59.684 55.000 0.00 0.00 0.00 3.36
2385 7302 0.033090 GTCGTGTTTTCTCCCCGTCT 59.967 55.000 0.00 0.00 0.00 4.18
2386 7303 0.249573 TGTCGTGTTTTCTCCCCGTC 60.250 55.000 0.00 0.00 0.00 4.79
2387 7304 0.531311 GTGTCGTGTTTTCTCCCCGT 60.531 55.000 0.00 0.00 0.00 5.28
2388 7305 0.531090 TGTGTCGTGTTTTCTCCCCG 60.531 55.000 0.00 0.00 0.00 5.73
2389 7306 1.670791 TTGTGTCGTGTTTTCTCCCC 58.329 50.000 0.00 0.00 0.00 4.81
2390 7307 2.875933 TCATTGTGTCGTGTTTTCTCCC 59.124 45.455 0.00 0.00 0.00 4.30
2391 7308 3.311322 TGTCATTGTGTCGTGTTTTCTCC 59.689 43.478 0.00 0.00 0.00 3.71
2392 7309 4.530094 TGTCATTGTGTCGTGTTTTCTC 57.470 40.909 0.00 0.00 0.00 2.87
2393 7310 4.438200 GGTTGTCATTGTGTCGTGTTTTCT 60.438 41.667 0.00 0.00 0.00 2.52
2394 7311 3.789224 GGTTGTCATTGTGTCGTGTTTTC 59.211 43.478 0.00 0.00 0.00 2.29
2395 7312 3.191581 TGGTTGTCATTGTGTCGTGTTTT 59.808 39.130 0.00 0.00 0.00 2.43
2396 7313 2.750166 TGGTTGTCATTGTGTCGTGTTT 59.250 40.909 0.00 0.00 0.00 2.83
2397 7314 2.360844 TGGTTGTCATTGTGTCGTGTT 58.639 42.857 0.00 0.00 0.00 3.32
2398 7315 2.031258 TGGTTGTCATTGTGTCGTGT 57.969 45.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.