Multiple sequence alignment - TraesCS1A01G252700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G252700 chr1A 100.000 1892 0 0 1 1892 444147712 444145821 0.000000e+00 3494.0
1 TraesCS1A01G252700 chr1A 100.000 1596 0 0 2121 3716 444145592 444143997 0.000000e+00 2948.0
2 TraesCS1A01G252700 chr1D 94.311 1459 77 4 2261 3715 344609290 344607834 0.000000e+00 2230.0
3 TraesCS1A01G252700 chr1D 93.407 1274 52 12 637 1892 344610561 344609302 0.000000e+00 1858.0
4 TraesCS1A01G252700 chr1D 92.308 650 29 6 1 637 344611646 344611005 0.000000e+00 904.0
5 TraesCS1A01G252700 chr1B 92.723 1168 44 20 747 1892 466071821 466072969 0.000000e+00 1648.0
6 TraesCS1A01G252700 chr1B 94.133 767 34 7 2254 3014 466072974 466073735 0.000000e+00 1157.0
7 TraesCS1A01G252700 chr1B 82.803 692 89 18 1 677 466070624 466071300 3.200000e-165 592.0
8 TraesCS1A01G252700 chr1B 91.196 443 25 4 1462 1892 129376911 129376471 1.150000e-164 590.0
9 TraesCS1A01G252700 chr1B 92.479 359 18 7 3074 3426 466074108 466074463 4.280000e-139 505.0
10 TraesCS1A01G252700 chr1B 93.706 286 17 1 3432 3716 466074641 466074926 9.540000e-116 427.0
11 TraesCS1A01G252700 chr1B 95.714 210 7 1 2261 2468 562423759 562423550 1.650000e-88 337.0
12 TraesCS1A01G252700 chr1B 77.477 333 48 22 381 706 466070654 466070966 1.370000e-39 174.0
13 TraesCS1A01G252700 chr4D 94.837 368 19 0 1462 1829 361165937 361166304 3.220000e-160 575.0
14 TraesCS1A01G252700 chr4D 93.989 366 22 0 1462 1827 361192379 361192744 4.190000e-154 555.0
15 TraesCS1A01G252700 chr2B 94.565 368 20 0 1462 1829 52988229 52987862 1.500000e-158 569.0
16 TraesCS1A01G252700 chr7B 94.293 368 21 0 1462 1829 29840138 29839771 6.970000e-157 564.0
17 TraesCS1A01G252700 chr7B 94.262 366 21 0 1462 1827 630868241 630868606 9.010000e-156 560.0
18 TraesCS1A01G252700 chr6A 94.293 368 21 0 1462 1829 615501719 615502086 6.970000e-157 564.0
19 TraesCS1A01G252700 chr6A 94.762 210 9 1 2261 2468 50541624 50541415 3.580000e-85 326.0
20 TraesCS1A01G252700 chr6A 93.981 216 11 1 2255 2468 58495145 58495360 3.580000e-85 326.0
21 TraesCS1A01G252700 chr4A 95.192 208 8 2 2261 2466 57021186 57020979 9.950000e-86 327.0
22 TraesCS1A01G252700 chr6B 93.981 216 11 1 2255 2468 7165460 7165675 3.580000e-85 326.0
23 TraesCS1A01G252700 chr4B 93.981 216 11 1 2255 2468 120293432 120293647 3.580000e-85 326.0
24 TraesCS1A01G252700 chr2A 94.762 210 8 2 2261 2468 497120062 497119854 1.290000e-84 324.0
25 TraesCS1A01G252700 chr7D 97.087 103 3 0 2121 2223 36095098 36094996 1.370000e-39 174.0
26 TraesCS1A01G252700 chr6D 92.562 121 7 2 2134 2253 6400516 6400635 4.930000e-39 172.0
27 TraesCS1A01G252700 chr6D 88.806 134 12 3 2121 2252 427266838 427266706 1.070000e-35 161.0
28 TraesCS1A01G252700 chr2D 95.192 104 4 1 2150 2253 63221310 63221412 2.970000e-36 163.0
29 TraesCS1A01G252700 chr5B 89.231 65 7 0 370 434 437573547 437573611 8.550000e-12 82.4
30 TraesCS1A01G252700 chr5B 89.231 65 7 0 370 434 437602823 437602887 8.550000e-12 82.4
31 TraesCS1A01G252700 chr5B 89.655 58 3 3 378 434 437304083 437304028 1.850000e-08 71.3
32 TraesCS1A01G252700 chr5D 97.778 45 0 1 378 422 369058551 369058508 3.980000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G252700 chr1A 444143997 444147712 3715 True 3221.0 3494 100.000000 1 3716 2 chr1A.!!$R1 3715
1 TraesCS1A01G252700 chr1D 344607834 344611646 3812 True 1664.0 2230 93.342000 1 3715 3 chr1D.!!$R1 3714
2 TraesCS1A01G252700 chr1B 466070624 466074926 4302 False 750.5 1648 88.886833 1 3716 6 chr1B.!!$F1 3715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 317 1.334869 GGCCGAAATTGACTATGCCTG 59.665 52.381 0.00 0.0 34.61 4.85 F
1442 2374 0.031994 CCACCAAAAGCAAGAACCCG 59.968 55.000 0.00 0.0 0.00 5.28 F
2161 3113 0.110823 CCAGTTCACTACAAACGCGC 60.111 55.000 5.73 0.0 0.00 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 3201 0.036010 AACATCAGCCCGAGGACAAG 60.036 55.000 0.0 0.0 0.0 3.16 R
2250 3202 0.321564 CAACATCAGCCCGAGGACAA 60.322 55.000 0.0 0.0 0.0 3.18 R
3354 4625 3.973206 TCGACATTGTGGTTCCTACAT 57.027 42.857 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 224 4.027702 GTCGACACACATTTTGAAAGTTGC 60.028 41.667 11.55 0.00 0.00 4.17
240 248 6.595326 GCTGAAAAGGATATTTCCCCAAAAAG 59.405 38.462 0.00 0.00 43.76 2.27
259 269 7.707893 CCAAAAAGTTGAAGTTTGAGATGACAT 59.292 33.333 0.00 0.00 36.83 3.06
276 286 8.964476 AGATGACATTGGACTTTATAAACGAT 57.036 30.769 0.00 0.00 0.00 3.73
307 317 1.334869 GGCCGAAATTGACTATGCCTG 59.665 52.381 0.00 0.00 34.61 4.85
309 319 2.292267 CCGAAATTGACTATGCCTGCT 58.708 47.619 0.00 0.00 0.00 4.24
499 517 7.751732 TGAAAAGTCATGAAATTCATACGAGG 58.248 34.615 8.29 0.00 34.28 4.63
500 518 7.606073 TGAAAAGTCATGAAATTCATACGAGGA 59.394 33.333 8.29 0.00 34.28 3.71
501 519 7.921786 AAAGTCATGAAATTCATACGAGGAA 57.078 32.000 8.29 0.00 34.28 3.36
502 520 7.921786 AAGTCATGAAATTCATACGAGGAAA 57.078 32.000 8.29 0.00 34.28 3.13
503 521 8.511604 AAGTCATGAAATTCATACGAGGAAAT 57.488 30.769 8.29 0.00 34.28 2.17
504 522 7.923888 AGTCATGAAATTCATACGAGGAAATG 58.076 34.615 8.29 0.00 34.28 2.32
505 523 7.770433 AGTCATGAAATTCATACGAGGAAATGA 59.230 33.333 8.29 0.00 34.28 2.57
506 524 8.397906 GTCATGAAATTCATACGAGGAAATGAA 58.602 33.333 8.29 0.68 44.00 2.57
520 538 8.025445 ACGAGGAAATGAAGAAATGAAGAAATG 58.975 33.333 0.00 0.00 0.00 2.32
522 540 9.918630 GAGGAAATGAAGAAATGAAGAAATGAA 57.081 29.630 0.00 0.00 0.00 2.57
628 646 3.791973 TTGAAGTTTGACACGGCATTT 57.208 38.095 0.00 0.00 0.00 2.32
631 649 3.317711 TGAAGTTTGACACGGCATTTGAT 59.682 39.130 0.00 0.00 0.00 2.57
680 1142 3.950794 TTGACCGTGCCTCCATCGC 62.951 63.158 0.00 0.00 0.00 4.58
726 1652 7.281040 AGCATCACGATCCAAATTAAATGAT 57.719 32.000 0.00 0.00 0.00 2.45
779 1705 4.977963 TGTACTATAGCCGCGTCAATTAAC 59.022 41.667 4.92 0.00 0.00 2.01
786 1712 4.905269 AGCCGCGTCAATTAACTTAAATC 58.095 39.130 4.92 0.00 0.00 2.17
812 1738 7.362574 CGGAGGGAGTGCTTTATTTATTGAAAA 60.363 37.037 0.00 0.00 0.00 2.29
858 1784 4.426416 GCCTAAAAACCGTTGTGAAAAGT 58.574 39.130 0.00 0.00 0.00 2.66
1020 1946 3.065371 CGATGAATCCCCTGCTAAACAAC 59.935 47.826 0.00 0.00 0.00 3.32
1121 2047 4.173924 GAGCAGGAGCAGGAGGCC 62.174 72.222 0.00 0.00 46.50 5.19
1278 2210 5.579718 GTCGTCAATCCTAAGATCGAGAAA 58.420 41.667 0.00 0.00 0.00 2.52
1296 2228 2.575805 AAGAGCTCAAGAAGGTTGGG 57.424 50.000 17.77 0.00 35.33 4.12
1331 2263 2.806198 CCCATTTGCAGTTGCGCG 60.806 61.111 0.00 0.00 45.83 6.86
1442 2374 0.031994 CCACCAAAAGCAAGAACCCG 59.968 55.000 0.00 0.00 0.00 5.28
1637 2569 6.738114 TCCAGCAAATTAGTTCTTTGTTGAG 58.262 36.000 12.30 5.14 43.37 3.02
1648 2580 9.965824 TTAGTTCTTTGTTGAGGATGATTTTTC 57.034 29.630 0.00 0.00 0.00 2.29
1661 2593 6.825721 AGGATGATTTTTCGTGCTTATCTCTT 59.174 34.615 0.00 0.00 0.00 2.85
1686 2618 7.056006 TGATGAAGTGAATATGTGGTGCTTAT 58.944 34.615 0.00 0.00 0.00 1.73
1718 2650 8.519492 TCAATTGCTAAGAATTTTGTTGCTAC 57.481 30.769 0.00 0.00 0.00 3.58
1719 2651 7.598493 TCAATTGCTAAGAATTTTGTTGCTACC 59.402 33.333 0.00 0.00 0.00 3.18
1720 2652 5.041951 TGCTAAGAATTTTGTTGCTACCG 57.958 39.130 0.00 0.00 0.00 4.02
1721 2653 4.517453 TGCTAAGAATTTTGTTGCTACCGT 59.483 37.500 0.00 0.00 0.00 4.83
1722 2654 5.009210 TGCTAAGAATTTTGTTGCTACCGTT 59.991 36.000 0.00 0.00 0.00 4.44
1723 2655 5.567915 GCTAAGAATTTTGTTGCTACCGTTC 59.432 40.000 0.00 0.00 0.00 3.95
1743 2675 1.728971 CGCAGCAAAGTCCTGTAAGAG 59.271 52.381 0.00 0.00 34.07 2.85
1884 2836 8.387190 TGATTATATCAACCAGCAGAATGAAG 57.613 34.615 0.00 0.00 35.15 3.02
2143 3095 2.358939 ACGAAACCATCACGAGTACC 57.641 50.000 0.00 0.00 0.00 3.34
2144 3096 1.614903 ACGAAACCATCACGAGTACCA 59.385 47.619 0.00 0.00 0.00 3.25
2145 3097 2.259618 CGAAACCATCACGAGTACCAG 58.740 52.381 0.00 0.00 0.00 4.00
2146 3098 2.352421 CGAAACCATCACGAGTACCAGT 60.352 50.000 0.00 0.00 0.00 4.00
2147 3099 3.660865 GAAACCATCACGAGTACCAGTT 58.339 45.455 0.00 0.00 0.00 3.16
2148 3100 3.314541 AACCATCACGAGTACCAGTTC 57.685 47.619 0.00 0.00 0.00 3.01
2149 3101 2.244695 ACCATCACGAGTACCAGTTCA 58.755 47.619 0.00 0.00 0.00 3.18
2150 3102 2.029290 ACCATCACGAGTACCAGTTCAC 60.029 50.000 0.00 0.00 0.00 3.18
2151 3103 2.231478 CCATCACGAGTACCAGTTCACT 59.769 50.000 0.00 0.00 0.00 3.41
2152 3104 3.442625 CCATCACGAGTACCAGTTCACTA 59.557 47.826 0.00 0.00 0.00 2.74
2153 3105 4.413087 CATCACGAGTACCAGTTCACTAC 58.587 47.826 0.00 0.00 0.00 2.73
2154 3106 3.479489 TCACGAGTACCAGTTCACTACA 58.521 45.455 0.00 0.00 0.00 2.74
2155 3107 3.884693 TCACGAGTACCAGTTCACTACAA 59.115 43.478 0.00 0.00 0.00 2.41
2156 3108 4.338964 TCACGAGTACCAGTTCACTACAAA 59.661 41.667 0.00 0.00 0.00 2.83
2157 3109 4.443394 CACGAGTACCAGTTCACTACAAAC 59.557 45.833 0.00 0.00 0.00 2.93
2158 3110 3.667261 CGAGTACCAGTTCACTACAAACG 59.333 47.826 0.00 0.00 0.00 3.60
2159 3111 3.387397 AGTACCAGTTCACTACAAACGC 58.613 45.455 0.00 0.00 0.00 4.84
2160 3112 1.214367 ACCAGTTCACTACAAACGCG 58.786 50.000 3.53 3.53 0.00 6.01
2161 3113 0.110823 CCAGTTCACTACAAACGCGC 60.111 55.000 5.73 0.00 0.00 6.86
2162 3114 0.579630 CAGTTCACTACAAACGCGCA 59.420 50.000 5.73 0.00 0.00 6.09
2163 3115 0.580104 AGTTCACTACAAACGCGCAC 59.420 50.000 5.73 0.00 0.00 5.34
2164 3116 0.383860 GTTCACTACAAACGCGCACC 60.384 55.000 5.73 0.00 0.00 5.01
2165 3117 0.531090 TTCACTACAAACGCGCACCT 60.531 50.000 5.73 0.00 0.00 4.00
2166 3118 0.314618 TCACTACAAACGCGCACCTA 59.685 50.000 5.73 0.00 0.00 3.08
2167 3119 0.437295 CACTACAAACGCGCACCTAC 59.563 55.000 5.73 0.00 0.00 3.18
2168 3120 0.316204 ACTACAAACGCGCACCTACT 59.684 50.000 5.73 0.00 0.00 2.57
2169 3121 1.269936 ACTACAAACGCGCACCTACTT 60.270 47.619 5.73 0.00 0.00 2.24
2170 3122 2.030007 ACTACAAACGCGCACCTACTTA 60.030 45.455 5.73 0.00 0.00 2.24
2171 3123 1.868469 ACAAACGCGCACCTACTTAA 58.132 45.000 5.73 0.00 0.00 1.85
2172 3124 2.211806 ACAAACGCGCACCTACTTAAA 58.788 42.857 5.73 0.00 0.00 1.52
2173 3125 2.613133 ACAAACGCGCACCTACTTAAAA 59.387 40.909 5.73 0.00 0.00 1.52
2174 3126 2.955607 AACGCGCACCTACTTAAAAC 57.044 45.000 5.73 0.00 0.00 2.43
2175 3127 2.159327 ACGCGCACCTACTTAAAACT 57.841 45.000 5.73 0.00 0.00 2.66
2176 3128 3.302365 ACGCGCACCTACTTAAAACTA 57.698 42.857 5.73 0.00 0.00 2.24
2177 3129 2.989166 ACGCGCACCTACTTAAAACTAC 59.011 45.455 5.73 0.00 0.00 2.73
2178 3130 2.346545 CGCGCACCTACTTAAAACTACC 59.653 50.000 8.75 0.00 0.00 3.18
2179 3131 3.328505 GCGCACCTACTTAAAACTACCA 58.671 45.455 0.30 0.00 0.00 3.25
2180 3132 3.747529 GCGCACCTACTTAAAACTACCAA 59.252 43.478 0.30 0.00 0.00 3.67
2181 3133 4.393990 GCGCACCTACTTAAAACTACCAAT 59.606 41.667 0.30 0.00 0.00 3.16
2182 3134 5.581874 GCGCACCTACTTAAAACTACCAATA 59.418 40.000 0.30 0.00 0.00 1.90
2183 3135 6.259387 GCGCACCTACTTAAAACTACCAATAT 59.741 38.462 0.30 0.00 0.00 1.28
2184 3136 7.517893 GCGCACCTACTTAAAACTACCAATATC 60.518 40.741 0.30 0.00 0.00 1.63
2185 3137 7.042254 CGCACCTACTTAAAACTACCAATATCC 60.042 40.741 0.00 0.00 0.00 2.59
2186 3138 7.771826 GCACCTACTTAAAACTACCAATATCCA 59.228 37.037 0.00 0.00 0.00 3.41
2187 3139 9.675464 CACCTACTTAAAACTACCAATATCCAA 57.325 33.333 0.00 0.00 0.00 3.53
2195 3147 8.485578 AAAACTACCAATATCCAAAGAAACCA 57.514 30.769 0.00 0.00 0.00 3.67
2196 3148 8.664669 AAACTACCAATATCCAAAGAAACCAT 57.335 30.769 0.00 0.00 0.00 3.55
2197 3149 7.881775 ACTACCAATATCCAAAGAAACCATC 57.118 36.000 0.00 0.00 0.00 3.51
2198 3150 7.643123 ACTACCAATATCCAAAGAAACCATCT 58.357 34.615 0.00 0.00 41.32 2.90
2199 3151 7.775561 ACTACCAATATCCAAAGAAACCATCTC 59.224 37.037 0.00 0.00 37.42 2.75
2200 3152 6.493166 ACCAATATCCAAAGAAACCATCTCA 58.507 36.000 0.00 0.00 37.42 3.27
2201 3153 6.953520 ACCAATATCCAAAGAAACCATCTCAA 59.046 34.615 0.00 0.00 37.42 3.02
2202 3154 7.454380 ACCAATATCCAAAGAAACCATCTCAAA 59.546 33.333 0.00 0.00 37.42 2.69
2203 3155 8.313292 CCAATATCCAAAGAAACCATCTCAAAA 58.687 33.333 0.00 0.00 37.42 2.44
2204 3156 9.362539 CAATATCCAAAGAAACCATCTCAAAAG 57.637 33.333 0.00 0.00 37.42 2.27
2205 3157 5.789643 TCCAAAGAAACCATCTCAAAAGG 57.210 39.130 0.00 0.00 37.42 3.11
2206 3158 4.039124 TCCAAAGAAACCATCTCAAAAGGC 59.961 41.667 0.00 0.00 37.42 4.35
2207 3159 4.202243 CCAAAGAAACCATCTCAAAAGGCA 60.202 41.667 0.00 0.00 37.42 4.75
2208 3160 4.861102 AAGAAACCATCTCAAAAGGCAG 57.139 40.909 0.00 0.00 37.42 4.85
2209 3161 2.560105 AGAAACCATCTCAAAAGGCAGC 59.440 45.455 0.00 0.00 30.46 5.25
2210 3162 1.999648 AACCATCTCAAAAGGCAGCA 58.000 45.000 0.00 0.00 0.00 4.41
2211 3163 1.542492 ACCATCTCAAAAGGCAGCAG 58.458 50.000 0.00 0.00 0.00 4.24
2212 3164 1.202976 ACCATCTCAAAAGGCAGCAGT 60.203 47.619 0.00 0.00 0.00 4.40
2213 3165 1.471684 CCATCTCAAAAGGCAGCAGTC 59.528 52.381 0.00 0.00 0.00 3.51
2214 3166 2.156917 CATCTCAAAAGGCAGCAGTCA 58.843 47.619 0.00 0.00 0.00 3.41
2215 3167 2.346766 TCTCAAAAGGCAGCAGTCAA 57.653 45.000 0.00 0.00 0.00 3.18
2216 3168 2.224606 TCTCAAAAGGCAGCAGTCAAG 58.775 47.619 0.00 0.00 0.00 3.02
2217 3169 1.952296 CTCAAAAGGCAGCAGTCAAGT 59.048 47.619 0.00 0.00 0.00 3.16
2218 3170 2.360165 CTCAAAAGGCAGCAGTCAAGTT 59.640 45.455 0.00 0.00 0.00 2.66
2219 3171 2.760092 TCAAAAGGCAGCAGTCAAGTTT 59.240 40.909 0.00 0.00 0.00 2.66
2220 3172 3.951037 TCAAAAGGCAGCAGTCAAGTTTA 59.049 39.130 0.00 0.00 0.00 2.01
2221 3173 4.400884 TCAAAAGGCAGCAGTCAAGTTTAA 59.599 37.500 0.00 0.00 0.00 1.52
2222 3174 5.105554 TCAAAAGGCAGCAGTCAAGTTTAAA 60.106 36.000 0.00 0.00 0.00 1.52
2223 3175 5.535753 AAAGGCAGCAGTCAAGTTTAAAT 57.464 34.783 0.00 0.00 0.00 1.40
2224 3176 5.535753 AAGGCAGCAGTCAAGTTTAAATT 57.464 34.783 0.00 0.00 0.00 1.82
2225 3177 5.126396 AGGCAGCAGTCAAGTTTAAATTC 57.874 39.130 0.00 0.00 0.00 2.17
2226 3178 4.829492 AGGCAGCAGTCAAGTTTAAATTCT 59.171 37.500 0.00 0.00 0.00 2.40
2227 3179 6.003950 AGGCAGCAGTCAAGTTTAAATTCTA 58.996 36.000 0.00 0.00 0.00 2.10
2228 3180 6.490040 AGGCAGCAGTCAAGTTTAAATTCTAA 59.510 34.615 0.00 0.00 0.00 2.10
2229 3181 6.582672 GGCAGCAGTCAAGTTTAAATTCTAAC 59.417 38.462 0.00 0.00 0.00 2.34
2230 3182 6.303259 GCAGCAGTCAAGTTTAAATTCTAACG 59.697 38.462 0.00 0.00 0.00 3.18
2231 3183 6.797033 CAGCAGTCAAGTTTAAATTCTAACGG 59.203 38.462 0.00 0.00 0.00 4.44
2232 3184 6.072673 AGCAGTCAAGTTTAAATTCTAACGGG 60.073 38.462 0.00 0.00 0.00 5.28
2233 3185 6.608610 CAGTCAAGTTTAAATTCTAACGGGG 58.391 40.000 0.00 0.00 0.00 5.73
2234 3186 6.206048 CAGTCAAGTTTAAATTCTAACGGGGT 59.794 38.462 0.00 0.00 0.00 4.95
2235 3187 6.429078 AGTCAAGTTTAAATTCTAACGGGGTC 59.571 38.462 0.00 0.00 0.00 4.46
2236 3188 6.205270 GTCAAGTTTAAATTCTAACGGGGTCA 59.795 38.462 0.00 0.00 0.00 4.02
2237 3189 6.205270 TCAAGTTTAAATTCTAACGGGGTCAC 59.795 38.462 0.00 0.00 0.00 3.67
2238 3190 5.623169 AGTTTAAATTCTAACGGGGTCACA 58.377 37.500 0.00 0.00 0.00 3.58
2239 3191 5.704053 AGTTTAAATTCTAACGGGGTCACAG 59.296 40.000 0.00 0.00 0.00 3.66
2240 3192 2.781681 AATTCTAACGGGGTCACAGG 57.218 50.000 0.00 0.00 0.00 4.00
2241 3193 0.252197 ATTCTAACGGGGTCACAGGC 59.748 55.000 0.00 0.00 0.00 4.85
2242 3194 2.125673 CTAACGGGGTCACAGGCG 60.126 66.667 0.00 0.00 0.00 5.52
2243 3195 2.601067 TAACGGGGTCACAGGCGA 60.601 61.111 0.00 0.00 0.00 5.54
2244 3196 2.830704 CTAACGGGGTCACAGGCGAC 62.831 65.000 0.00 0.00 35.03 5.19
2250 3202 2.982130 GTCACAGGCGACCCATCT 59.018 61.111 0.00 0.00 0.00 2.90
2251 3203 1.296715 GTCACAGGCGACCCATCTT 59.703 57.895 0.00 0.00 0.00 2.40
2252 3204 1.021390 GTCACAGGCGACCCATCTTG 61.021 60.000 0.00 0.00 0.00 3.02
2258 3210 1.519455 GCGACCCATCTTGTCCTCG 60.519 63.158 0.00 0.00 0.00 4.63
2259 3211 1.141881 CGACCCATCTTGTCCTCGG 59.858 63.158 0.00 0.00 0.00 4.63
2353 3309 6.934056 TGCACAAACCTTTTCTGCAATATAT 58.066 32.000 0.00 0.00 34.97 0.86
2391 3347 8.680039 TTCTACTTCTGTAGCTATACCTTCTC 57.320 38.462 0.00 0.00 44.26 2.87
2396 3352 3.815962 CTGTAGCTATACCTTCTCTGCGA 59.184 47.826 0.00 0.00 0.00 5.10
2435 3391 3.244387 ACAAGGAGAAAGAGGCTCTCAAC 60.244 47.826 19.03 11.91 41.01 3.18
2444 3400 7.001073 AGAAAGAGGCTCTCAACTATTTGTTT 58.999 34.615 19.03 3.28 36.63 2.83
2468 3424 2.504367 CTGGTCCCTTTGATCAACGTT 58.496 47.619 7.89 0.00 32.45 3.99
2498 3454 3.613563 GTTCTTCGTGAAATCGTTTGCA 58.386 40.909 0.00 0.00 36.30 4.08
2568 3524 7.589958 TGGAAGGTACATGTTTAATGTTGTT 57.410 32.000 2.30 0.00 33.76 2.83
2572 3528 8.568732 AAGGTACATGTTTAATGTTGTTTTCG 57.431 30.769 2.30 0.00 33.76 3.46
2589 3545 0.821517 TCGCCTTCAGGATTTCGCTA 59.178 50.000 0.00 0.00 37.39 4.26
2719 3675 2.210116 TGCAAAAGTCCGAGTGAAGAC 58.790 47.619 0.00 0.00 0.00 3.01
2837 3793 7.310175 GCCCTTTAAAGTTTTGTGTATACCCAT 60.310 37.037 14.03 0.00 0.00 4.00
2854 3810 2.614057 CCCATGAAGTACGGAGAAATGC 59.386 50.000 0.00 0.00 0.00 3.56
3021 3978 5.449588 CCAGCTACTTCAAGGCACATTTATG 60.450 44.000 0.00 0.00 0.00 1.90
3114 4384 2.366266 TGCAAGAAATCAGGCAAAAGCT 59.634 40.909 0.00 0.00 32.54 3.74
3246 4516 1.726248 TGTGTTCATCTCGTTGCATCG 59.274 47.619 10.93 10.93 0.00 3.84
3277 4548 4.409574 TCCCAGTTAAAAGACAGTACCACA 59.590 41.667 0.00 0.00 0.00 4.17
3340 4611 1.331756 CCCGTATGAAGAATGTGCAGC 59.668 52.381 0.00 0.00 0.00 5.25
3354 4625 1.055849 TGCAGCTCCTACTGGTTTGA 58.944 50.000 0.00 0.00 38.16 2.69
3384 4655 3.118555 ACCACAATGTCGATTAATCCGGA 60.119 43.478 6.61 6.61 0.00 5.14
3399 4670 9.931210 GATTAATCCGGAAACAGTAAACTATTG 57.069 33.333 9.01 0.00 0.00 1.90
3490 4938 2.976490 GCAGGTGATGGGCCAGAGT 61.976 63.158 13.78 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 118 9.015367 TGTTGTATGAATTTCGGGATTCTTTTA 57.985 29.630 11.25 1.86 37.04 1.52
155 163 4.165779 CGTGCCGCAAAATTTAGAATCTT 58.834 39.130 0.00 0.00 0.00 2.40
216 224 7.679783 ACTTTTTGGGGAAATATCCTTTTCAG 58.320 34.615 0.00 0.00 45.77 3.02
240 248 6.016777 AGTCCAATGTCATCTCAAACTTCAAC 60.017 38.462 0.00 0.00 0.00 3.18
276 286 4.082463 GTCAATTTCGGCCAGGTGATTTTA 60.082 41.667 2.24 0.00 0.00 1.52
282 292 2.107950 TAGTCAATTTCGGCCAGGTG 57.892 50.000 2.24 0.00 0.00 4.00
307 317 3.338126 GACAGCCATGCAGCACAGC 62.338 63.158 10.00 10.00 34.23 4.40
309 319 2.674033 GGACAGCCATGCAGCACA 60.674 61.111 0.00 0.00 34.23 4.57
483 501 8.737168 TCTTCATTTCCTCGTATGAATTTCAT 57.263 30.769 15.78 15.78 39.34 2.57
503 521 9.918630 GGATTTCTTCATTTCTTCATTTCTTCA 57.081 29.630 0.00 0.00 0.00 3.02
520 538 8.561738 TGTTCACCAACTATTAGGATTTCTTC 57.438 34.615 0.00 0.00 33.17 2.87
522 540 8.934023 TTTGTTCACCAACTATTAGGATTTCT 57.066 30.769 0.00 0.00 33.17 2.52
528 546 8.335532 TCAGAATTTGTTCACCAACTATTAGG 57.664 34.615 0.00 0.00 33.17 2.69
631 649 9.660180 GGCCTGGTATTTTTGTCATTTATAAAA 57.340 29.630 1.21 0.00 0.00 1.52
680 1142 4.976925 CGCGGATAGGCCTGCAGG 62.977 72.222 29.34 29.34 36.43 4.85
695 1157 1.068264 TGGATCGTGATGCTATCTCGC 60.068 52.381 12.59 0.00 43.60 5.03
706 1168 6.448207 TGCATCATTTAATTTGGATCGTGA 57.552 33.333 0.00 0.00 0.00 4.35
708 1170 5.068198 AGCTGCATCATTTAATTTGGATCGT 59.932 36.000 1.02 0.00 0.00 3.73
726 1652 2.260844 AAAGTTGTGCTAGAGCTGCA 57.739 45.000 1.02 0.00 42.66 4.41
767 1693 5.133707 TCCGATTTAAGTTAATTGACGCG 57.866 39.130 3.53 3.53 0.00 6.01
779 1705 2.990066 AGCACTCCCTCCGATTTAAG 57.010 50.000 0.00 0.00 0.00 1.85
786 1712 5.123227 TCAATAAATAAAGCACTCCCTCCG 58.877 41.667 0.00 0.00 0.00 4.63
826 1752 6.822170 ACAACGGTTTTTAGGCCAAAATTTTA 59.178 30.769 5.01 0.00 36.04 1.52
858 1784 0.693622 TTCCACCCGTTGGCTTCATA 59.306 50.000 0.00 0.00 46.47 2.15
898 1824 2.847234 ACCTTCTGGCCGTGGTCA 60.847 61.111 0.00 0.00 36.63 4.02
1278 2210 1.734655 TCCCAACCTTCTTGAGCTCT 58.265 50.000 16.19 0.00 0.00 4.09
1296 2228 1.751351 GGGTTCAGGGCTTTAGCAATC 59.249 52.381 3.88 0.00 44.36 2.67
1331 2263 9.553064 TCAGATAAAGCTTGATAATTTCTCTCC 57.447 33.333 0.00 0.00 0.00 3.71
1550 2482 1.019673 CCATGAGCCTCCAAATGTCG 58.980 55.000 0.00 0.00 0.00 4.35
1637 2569 6.610741 AGAGATAAGCACGAAAAATCATCC 57.389 37.500 0.00 0.00 0.00 3.51
1648 2580 5.105063 TCACTTCATCAAGAGATAAGCACG 58.895 41.667 0.00 0.00 33.34 5.34
1661 2593 4.847198 AGCACCACATATTCACTTCATCA 58.153 39.130 0.00 0.00 0.00 3.07
1686 2618 7.495279 ACAAAATTCTTAGCAATTGAACAGCAA 59.505 29.630 10.34 0.00 41.53 3.91
1718 2650 1.961277 AGGACTTTGCTGCGAACGG 60.961 57.895 0.00 0.00 0.00 4.44
1719 2651 1.205064 CAGGACTTTGCTGCGAACG 59.795 57.895 0.00 0.00 0.00 3.95
1720 2652 1.508632 TACAGGACTTTGCTGCGAAC 58.491 50.000 0.00 0.00 39.63 3.95
1721 2653 2.143122 CTTACAGGACTTTGCTGCGAA 58.857 47.619 1.77 1.77 39.63 4.70
1722 2654 1.343142 TCTTACAGGACTTTGCTGCGA 59.657 47.619 0.00 0.00 39.63 5.10
1723 2655 1.728971 CTCTTACAGGACTTTGCTGCG 59.271 52.381 0.00 0.00 39.63 5.18
1743 2675 4.664392 TCCTAGGCCTAAGACATACTAGC 58.336 47.826 14.85 0.00 0.00 3.42
1790 2722 8.681806 AGATATACGAGATACATCATGTTCCTG 58.318 37.037 0.00 0.00 0.00 3.86
1823 2756 5.405935 AGTGAACTAGATATGCACACACA 57.594 39.130 0.00 0.00 32.16 3.72
1824 2757 6.330278 TGTAGTGAACTAGATATGCACACAC 58.670 40.000 0.00 0.00 32.16 3.82
1825 2758 6.524101 TGTAGTGAACTAGATATGCACACA 57.476 37.500 0.00 0.00 32.16 3.72
1826 2759 7.827819 TTTGTAGTGAACTAGATATGCACAC 57.172 36.000 0.00 0.00 32.16 3.82
1866 2818 6.054295 GTCTATCTTCATTCTGCTGGTTGAT 58.946 40.000 0.00 0.00 0.00 2.57
1867 2819 5.046376 TGTCTATCTTCATTCTGCTGGTTGA 60.046 40.000 0.00 0.00 0.00 3.18
2120 3072 4.866486 GGTACTCGTGATGGTTTCGTTAAT 59.134 41.667 0.00 0.00 0.00 1.40
2121 3073 4.236935 GGTACTCGTGATGGTTTCGTTAA 58.763 43.478 0.00 0.00 0.00 2.01
2122 3074 3.255395 TGGTACTCGTGATGGTTTCGTTA 59.745 43.478 0.00 0.00 0.00 3.18
2123 3075 2.036217 TGGTACTCGTGATGGTTTCGTT 59.964 45.455 0.00 0.00 0.00 3.85
2124 3076 1.614903 TGGTACTCGTGATGGTTTCGT 59.385 47.619 0.00 0.00 0.00 3.85
2125 3077 2.259618 CTGGTACTCGTGATGGTTTCG 58.740 52.381 0.00 0.00 0.00 3.46
2126 3078 3.314541 ACTGGTACTCGTGATGGTTTC 57.685 47.619 0.00 0.00 0.00 2.78
2127 3079 3.070446 TGAACTGGTACTCGTGATGGTTT 59.930 43.478 0.00 0.00 0.00 3.27
2128 3080 2.631062 TGAACTGGTACTCGTGATGGTT 59.369 45.455 0.00 0.00 0.00 3.67
2129 3081 2.029290 GTGAACTGGTACTCGTGATGGT 60.029 50.000 0.00 0.00 0.00 3.55
2130 3082 2.231478 AGTGAACTGGTACTCGTGATGG 59.769 50.000 0.00 0.00 0.00 3.51
2131 3083 3.577649 AGTGAACTGGTACTCGTGATG 57.422 47.619 0.00 0.00 0.00 3.07
2132 3084 4.077108 TGTAGTGAACTGGTACTCGTGAT 58.923 43.478 0.00 0.00 0.00 3.06
2133 3085 3.479489 TGTAGTGAACTGGTACTCGTGA 58.521 45.455 0.00 0.00 0.00 4.35
2134 3086 3.909776 TGTAGTGAACTGGTACTCGTG 57.090 47.619 0.00 0.00 0.00 4.35
2135 3087 4.614946 GTTTGTAGTGAACTGGTACTCGT 58.385 43.478 0.00 0.00 0.00 4.18
2136 3088 3.667261 CGTTTGTAGTGAACTGGTACTCG 59.333 47.826 0.00 0.00 0.00 4.18
2137 3089 3.427863 GCGTTTGTAGTGAACTGGTACTC 59.572 47.826 0.00 0.00 0.00 2.59
2138 3090 3.387397 GCGTTTGTAGTGAACTGGTACT 58.613 45.455 0.00 0.00 0.00 2.73
2139 3091 2.154389 CGCGTTTGTAGTGAACTGGTAC 59.846 50.000 0.00 0.00 0.00 3.34
2140 3092 2.396601 CGCGTTTGTAGTGAACTGGTA 58.603 47.619 0.00 0.00 0.00 3.25
2141 3093 1.214367 CGCGTTTGTAGTGAACTGGT 58.786 50.000 0.00 0.00 0.00 4.00
2142 3094 0.110823 GCGCGTTTGTAGTGAACTGG 60.111 55.000 8.43 0.00 0.00 4.00
2143 3095 0.579630 TGCGCGTTTGTAGTGAACTG 59.420 50.000 8.43 0.00 0.00 3.16
2144 3096 0.580104 GTGCGCGTTTGTAGTGAACT 59.420 50.000 8.43 0.00 0.00 3.01
2145 3097 0.383860 GGTGCGCGTTTGTAGTGAAC 60.384 55.000 8.43 0.00 0.00 3.18
2146 3098 0.531090 AGGTGCGCGTTTGTAGTGAA 60.531 50.000 8.43 0.00 0.00 3.18
2147 3099 0.314618 TAGGTGCGCGTTTGTAGTGA 59.685 50.000 8.43 0.00 0.00 3.41
2148 3100 0.437295 GTAGGTGCGCGTTTGTAGTG 59.563 55.000 8.43 0.00 0.00 2.74
2149 3101 0.316204 AGTAGGTGCGCGTTTGTAGT 59.684 50.000 8.43 0.00 0.00 2.73
2150 3102 1.425412 AAGTAGGTGCGCGTTTGTAG 58.575 50.000 8.43 0.00 0.00 2.74
2151 3103 2.721274 TAAGTAGGTGCGCGTTTGTA 57.279 45.000 8.43 0.00 0.00 2.41
2152 3104 1.868469 TTAAGTAGGTGCGCGTTTGT 58.132 45.000 8.43 0.00 0.00 2.83
2153 3105 2.953640 TTTAAGTAGGTGCGCGTTTG 57.046 45.000 8.43 0.00 0.00 2.93
2154 3106 2.874086 AGTTTTAAGTAGGTGCGCGTTT 59.126 40.909 8.43 0.00 0.00 3.60
2155 3107 2.486918 AGTTTTAAGTAGGTGCGCGTT 58.513 42.857 8.43 0.00 0.00 4.84
2156 3108 2.159327 AGTTTTAAGTAGGTGCGCGT 57.841 45.000 8.43 0.00 0.00 6.01
2157 3109 2.346545 GGTAGTTTTAAGTAGGTGCGCG 59.653 50.000 0.00 0.00 0.00 6.86
2158 3110 3.328505 TGGTAGTTTTAAGTAGGTGCGC 58.671 45.455 0.00 0.00 0.00 6.09
2159 3111 7.042254 GGATATTGGTAGTTTTAAGTAGGTGCG 60.042 40.741 0.00 0.00 0.00 5.34
2160 3112 7.771826 TGGATATTGGTAGTTTTAAGTAGGTGC 59.228 37.037 0.00 0.00 0.00 5.01
2161 3113 9.675464 TTGGATATTGGTAGTTTTAAGTAGGTG 57.325 33.333 0.00 0.00 0.00 4.00
2169 3121 9.589461 TGGTTTCTTTGGATATTGGTAGTTTTA 57.411 29.630 0.00 0.00 0.00 1.52
2170 3122 8.485578 TGGTTTCTTTGGATATTGGTAGTTTT 57.514 30.769 0.00 0.00 0.00 2.43
2171 3123 8.664669 ATGGTTTCTTTGGATATTGGTAGTTT 57.335 30.769 0.00 0.00 0.00 2.66
2172 3124 8.116026 AGATGGTTTCTTTGGATATTGGTAGTT 58.884 33.333 0.00 0.00 0.00 2.24
2173 3125 7.643123 AGATGGTTTCTTTGGATATTGGTAGT 58.357 34.615 0.00 0.00 0.00 2.73
2174 3126 7.775093 TGAGATGGTTTCTTTGGATATTGGTAG 59.225 37.037 0.00 0.00 33.74 3.18
2175 3127 7.638444 TGAGATGGTTTCTTTGGATATTGGTA 58.362 34.615 0.00 0.00 33.74 3.25
2176 3128 6.493166 TGAGATGGTTTCTTTGGATATTGGT 58.507 36.000 0.00 0.00 33.74 3.67
2177 3129 7.408756 TTGAGATGGTTTCTTTGGATATTGG 57.591 36.000 0.00 0.00 33.74 3.16
2178 3130 9.362539 CTTTTGAGATGGTTTCTTTGGATATTG 57.637 33.333 0.00 0.00 33.74 1.90
2179 3131 8.534496 CCTTTTGAGATGGTTTCTTTGGATATT 58.466 33.333 0.00 0.00 33.74 1.28
2180 3132 7.364144 GCCTTTTGAGATGGTTTCTTTGGATAT 60.364 37.037 0.00 0.00 33.74 1.63
2181 3133 6.071391 GCCTTTTGAGATGGTTTCTTTGGATA 60.071 38.462 0.00 0.00 33.74 2.59
2182 3134 5.279657 GCCTTTTGAGATGGTTTCTTTGGAT 60.280 40.000 0.00 0.00 33.74 3.41
2183 3135 4.039124 GCCTTTTGAGATGGTTTCTTTGGA 59.961 41.667 0.00 0.00 33.74 3.53
2184 3136 4.202243 TGCCTTTTGAGATGGTTTCTTTGG 60.202 41.667 0.00 0.00 33.74 3.28
2185 3137 4.947645 TGCCTTTTGAGATGGTTTCTTTG 58.052 39.130 0.00 0.00 33.74 2.77
2186 3138 4.502087 GCTGCCTTTTGAGATGGTTTCTTT 60.502 41.667 0.00 0.00 33.74 2.52
2187 3139 3.006217 GCTGCCTTTTGAGATGGTTTCTT 59.994 43.478 0.00 0.00 33.74 2.52
2188 3140 2.560105 GCTGCCTTTTGAGATGGTTTCT 59.440 45.455 0.00 0.00 37.41 2.52
2189 3141 2.297033 TGCTGCCTTTTGAGATGGTTTC 59.703 45.455 0.00 0.00 0.00 2.78
2190 3142 2.298163 CTGCTGCCTTTTGAGATGGTTT 59.702 45.455 0.00 0.00 0.00 3.27
2191 3143 1.891150 CTGCTGCCTTTTGAGATGGTT 59.109 47.619 0.00 0.00 0.00 3.67
2192 3144 1.202976 ACTGCTGCCTTTTGAGATGGT 60.203 47.619 0.00 0.00 0.00 3.55
2193 3145 1.471684 GACTGCTGCCTTTTGAGATGG 59.528 52.381 0.00 0.00 0.00 3.51
2194 3146 2.156917 TGACTGCTGCCTTTTGAGATG 58.843 47.619 0.00 0.00 0.00 2.90
2195 3147 2.574006 TGACTGCTGCCTTTTGAGAT 57.426 45.000 0.00 0.00 0.00 2.75
2196 3148 2.224606 CTTGACTGCTGCCTTTTGAGA 58.775 47.619 0.00 0.00 0.00 3.27
2197 3149 1.952296 ACTTGACTGCTGCCTTTTGAG 59.048 47.619 0.00 0.00 0.00 3.02
2198 3150 2.057137 ACTTGACTGCTGCCTTTTGA 57.943 45.000 0.00 0.00 0.00 2.69
2199 3151 2.877043 AACTTGACTGCTGCCTTTTG 57.123 45.000 0.00 0.00 0.00 2.44
2200 3152 5.337578 TTTAAACTTGACTGCTGCCTTTT 57.662 34.783 0.00 0.00 0.00 2.27
2201 3153 5.535753 ATTTAAACTTGACTGCTGCCTTT 57.464 34.783 0.00 0.00 0.00 3.11
2202 3154 5.302823 AGAATTTAAACTTGACTGCTGCCTT 59.697 36.000 0.00 0.00 0.00 4.35
2203 3155 4.829492 AGAATTTAAACTTGACTGCTGCCT 59.171 37.500 0.00 0.00 0.00 4.75
2204 3156 5.126396 AGAATTTAAACTTGACTGCTGCC 57.874 39.130 0.00 0.00 0.00 4.85
2205 3157 6.303259 CGTTAGAATTTAAACTTGACTGCTGC 59.697 38.462 0.00 0.00 0.00 5.25
2206 3158 6.797033 CCGTTAGAATTTAAACTTGACTGCTG 59.203 38.462 0.00 0.00 0.00 4.41
2207 3159 6.072673 CCCGTTAGAATTTAAACTTGACTGCT 60.073 38.462 0.00 0.00 0.00 4.24
2208 3160 6.084277 CCCGTTAGAATTTAAACTTGACTGC 58.916 40.000 0.00 0.00 0.00 4.40
2209 3161 6.206048 ACCCCGTTAGAATTTAAACTTGACTG 59.794 38.462 0.00 0.00 0.00 3.51
2210 3162 6.301486 ACCCCGTTAGAATTTAAACTTGACT 58.699 36.000 0.00 0.00 0.00 3.41
2211 3163 6.205270 TGACCCCGTTAGAATTTAAACTTGAC 59.795 38.462 0.00 0.00 0.00 3.18
2212 3164 6.205270 GTGACCCCGTTAGAATTTAAACTTGA 59.795 38.462 0.00 0.00 0.00 3.02
2213 3165 6.016943 TGTGACCCCGTTAGAATTTAAACTTG 60.017 38.462 0.00 0.00 0.00 3.16
2214 3166 6.063404 TGTGACCCCGTTAGAATTTAAACTT 58.937 36.000 0.00 0.00 0.00 2.66
2215 3167 5.623169 TGTGACCCCGTTAGAATTTAAACT 58.377 37.500 0.00 0.00 0.00 2.66
2216 3168 5.106436 CCTGTGACCCCGTTAGAATTTAAAC 60.106 44.000 0.00 0.00 0.00 2.01
2217 3169 5.005094 CCTGTGACCCCGTTAGAATTTAAA 58.995 41.667 0.00 0.00 0.00 1.52
2218 3170 4.581868 CCTGTGACCCCGTTAGAATTTAA 58.418 43.478 0.00 0.00 0.00 1.52
2219 3171 3.620472 GCCTGTGACCCCGTTAGAATTTA 60.620 47.826 0.00 0.00 0.00 1.40
2220 3172 2.878526 GCCTGTGACCCCGTTAGAATTT 60.879 50.000 0.00 0.00 0.00 1.82
2221 3173 1.339727 GCCTGTGACCCCGTTAGAATT 60.340 52.381 0.00 0.00 0.00 2.17
2222 3174 0.252197 GCCTGTGACCCCGTTAGAAT 59.748 55.000 0.00 0.00 0.00 2.40
2223 3175 1.675219 GCCTGTGACCCCGTTAGAA 59.325 57.895 0.00 0.00 0.00 2.10
2224 3176 2.642254 CGCCTGTGACCCCGTTAGA 61.642 63.158 0.00 0.00 0.00 2.10
2225 3177 2.125673 CGCCTGTGACCCCGTTAG 60.126 66.667 0.00 0.00 0.00 2.34
2226 3178 2.601067 TCGCCTGTGACCCCGTTA 60.601 61.111 0.00 0.00 0.00 3.18
2227 3179 4.309950 GTCGCCTGTGACCCCGTT 62.310 66.667 0.00 0.00 32.61 4.44
2233 3185 1.021390 CAAGATGGGTCGCCTGTGAC 61.021 60.000 2.24 2.24 38.17 3.67
2234 3186 1.296392 CAAGATGGGTCGCCTGTGA 59.704 57.895 0.00 0.00 0.00 3.58
2235 3187 1.003355 ACAAGATGGGTCGCCTGTG 60.003 57.895 0.00 0.00 0.00 3.66
2236 3188 1.296715 GACAAGATGGGTCGCCTGT 59.703 57.895 0.00 0.00 0.00 4.00
2237 3189 1.450312 GGACAAGATGGGTCGCCTG 60.450 63.158 0.00 0.00 36.12 4.85
2238 3190 1.613630 AGGACAAGATGGGTCGCCT 60.614 57.895 0.00 0.00 36.12 5.52
2239 3191 1.153349 GAGGACAAGATGGGTCGCC 60.153 63.158 0.00 0.00 36.12 5.54
2240 3192 1.519455 CGAGGACAAGATGGGTCGC 60.519 63.158 0.00 0.00 36.12 5.19
2241 3193 1.141881 CCGAGGACAAGATGGGTCG 59.858 63.158 0.00 0.00 36.12 4.79
2242 3194 1.522569 CCCGAGGACAAGATGGGTC 59.477 63.158 0.00 0.00 35.05 4.46
2243 3195 2.670148 GCCCGAGGACAAGATGGGT 61.670 63.158 0.00 0.00 42.10 4.51
2244 3196 2.190578 GCCCGAGGACAAGATGGG 59.809 66.667 0.00 0.00 43.02 4.00
2245 3197 1.153289 CAGCCCGAGGACAAGATGG 60.153 63.158 0.00 0.00 0.00 3.51
2246 3198 0.467384 ATCAGCCCGAGGACAAGATG 59.533 55.000 0.00 0.00 0.00 2.90
2247 3199 0.467384 CATCAGCCCGAGGACAAGAT 59.533 55.000 0.00 0.00 0.00 2.40
2248 3200 0.904865 ACATCAGCCCGAGGACAAGA 60.905 55.000 0.00 0.00 0.00 3.02
2249 3201 0.036010 AACATCAGCCCGAGGACAAG 60.036 55.000 0.00 0.00 0.00 3.16
2250 3202 0.321564 CAACATCAGCCCGAGGACAA 60.322 55.000 0.00 0.00 0.00 3.18
2251 3203 1.296392 CAACATCAGCCCGAGGACA 59.704 57.895 0.00 0.00 0.00 4.02
2252 3204 2.109126 GCAACATCAGCCCGAGGAC 61.109 63.158 0.00 0.00 0.00 3.85
2258 3210 0.675633 AGTTGTTGCAACATCAGCCC 59.324 50.000 31.79 17.60 38.95 5.19
2259 3211 2.129607 CAAGTTGTTGCAACATCAGCC 58.870 47.619 31.79 18.98 38.95 4.85
2300 3252 7.609146 AGCACTGAATCAAAGAACATATTCTCA 59.391 33.333 0.00 0.00 44.82 3.27
2324 3277 3.054878 CAGAAAAGGTTTGTGCATCAGC 58.945 45.455 0.00 0.00 42.57 4.26
2396 3352 1.598130 GTTTGAGCAGTCACGGGCT 60.598 57.895 0.00 0.00 44.48 5.19
2435 3391 6.889722 TCAAAGGGACCAGGATAAACAAATAG 59.110 38.462 0.00 0.00 0.00 1.73
2444 3400 3.118408 CGTTGATCAAAGGGACCAGGATA 60.118 47.826 10.35 0.00 0.00 2.59
2568 3524 0.802494 GCGAAATCCTGAAGGCGAAA 59.198 50.000 0.00 0.00 34.44 3.46
2572 3528 2.945668 ACAATAGCGAAATCCTGAAGGC 59.054 45.455 0.00 0.00 34.44 4.35
2612 3568 1.033202 TCATCCGCAGCAATGCATGT 61.033 50.000 8.35 0.00 34.41 3.21
2640 3596 9.236006 ACATATACATGAAAGCTTGGGATAATC 57.764 33.333 0.00 0.00 35.96 1.75
2641 3597 9.236006 GACATATACATGAAAGCTTGGGATAAT 57.764 33.333 0.00 0.00 35.96 1.28
2837 3793 3.520290 ATCGCATTTCTCCGTACTTCA 57.480 42.857 0.00 0.00 0.00 3.02
2966 3923 8.827677 GGAACATTTGATACAGTAGGTACAATC 58.172 37.037 0.00 0.00 34.07 2.67
3021 3978 4.465632 AAAAACCCAAGTCACTTGAACC 57.534 40.909 19.75 0.00 43.42 3.62
3206 4476 6.649155 ACACAGTAGCCAATCATACATGTAA 58.351 36.000 10.14 0.00 0.00 2.41
3246 4516 4.578928 TGTCTTTTAACTGGGAACTGAAGC 59.421 41.667 0.00 0.00 0.00 3.86
3354 4625 3.973206 TCGACATTGTGGTTCCTACAT 57.027 42.857 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.