Multiple sequence alignment - TraesCS1A01G252500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G252500 chr1A 100.000 3598 0 0 1 3598 444130598 444127001 0.000000e+00 6645
1 TraesCS1A01G252500 chr1A 97.101 138 3 1 2043 2179 32293612 32293475 7.770000e-57 231
2 TraesCS1A01G252500 chr1D 94.918 1279 46 7 2323 3598 344596878 344595616 0.000000e+00 1984
3 TraesCS1A01G252500 chr1D 90.415 1252 56 28 788 2016 344598174 344596964 0.000000e+00 1589
4 TraesCS1A01G252500 chr1D 92.193 269 14 6 451 712 344599140 344598872 1.220000e-99 374
5 TraesCS1A01G252500 chr1B 92.377 1220 67 9 807 2016 466086975 466088178 0.000000e+00 1714
6 TraesCS1A01G252500 chr1B 95.026 945 41 5 2657 3598 466088810 466089751 0.000000e+00 1480
7 TraesCS1A01G252500 chr1B 89.165 443 40 8 15 452 466085111 466085550 2.440000e-151 545
8 TraesCS1A01G252500 chr1B 94.925 335 13 3 2323 2654 466088265 466088598 4.120000e-144 521
9 TraesCS1A01G252500 chr1B 95.302 149 7 0 2176 2324 466088171 466088319 1.670000e-58 237
10 TraesCS1A01G252500 chr6A 98.758 161 1 1 2017 2176 206487417 206487257 5.880000e-73 285
11 TraesCS1A01G252500 chr6A 97.778 135 2 1 2043 2176 2832527 2832661 7.770000e-57 231
12 TraesCS1A01G252500 chr2B 98.758 161 1 1 2017 2176 74062055 74061895 5.880000e-73 285
13 TraesCS1A01G252500 chr7A 98.137 161 2 1 2017 2176 158373241 158373401 2.740000e-71 279
14 TraesCS1A01G252500 chr7A 97.794 136 2 1 2043 2177 380476703 380476838 2.160000e-57 233
15 TraesCS1A01G252500 chr7A 95.522 67 2 1 2059 2124 404166818 404166884 4.910000e-19 106
16 TraesCS1A01G252500 chr4A 96.273 161 4 2 2017 2176 168547159 168547318 2.750000e-66 263
17 TraesCS1A01G252500 chr3B 97.794 136 2 1 2043 2177 807317287 807317422 2.160000e-57 233
18 TraesCS1A01G252500 chr3B 97.015 134 3 1 2043 2175 668818540 668818673 1.300000e-54 224
19 TraesCS1A01G252500 chr5B 97.101 138 2 2 2043 2178 534469871 534469734 7.770000e-57 231
20 TraesCS1A01G252500 chr5D 95.833 120 3 2 2059 2176 73768961 73769080 3.670000e-45 193
21 TraesCS1A01G252500 chr6D 95.798 119 4 1 2059 2176 384552446 384552328 1.320000e-44 191
22 TraesCS1A01G252500 chr4D 96.875 64 1 1 2059 2121 51610886 51610949 4.910000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G252500 chr1A 444127001 444130598 3597 True 6645.000000 6645 100.000000 1 3598 1 chr1A.!!$R2 3597
1 TraesCS1A01G252500 chr1D 344595616 344599140 3524 True 1315.666667 1984 92.508667 451 3598 3 chr1D.!!$R1 3147
2 TraesCS1A01G252500 chr1B 466085111 466089751 4640 False 899.400000 1714 93.359000 15 3598 5 chr1B.!!$F1 3583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 858 0.033366 TGAGTATGTGTGCAGCGTGT 59.967 50.0 0.0 0.0 0.0 4.49 F
2048 3422 0.251742 TGGGCTGATTTTGTGGAGGG 60.252 55.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 3488 0.040204 CCCCAGCCCATGAGAAAACT 59.960 55.0 0.0 0.0 0.0 2.66 R
3451 5039 0.172578 CATGTGCTGCTTGTGATGGG 59.827 55.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.440850 CATGCCGCAGAACAACACG 60.441 57.895 0.00 0.00 0.00 4.49
43 44 2.160417 CACGGAAGAAGATGTTGAAGGC 59.840 50.000 0.00 0.00 0.00 4.35
44 45 2.224523 ACGGAAGAAGATGTTGAAGGCA 60.225 45.455 0.00 0.00 0.00 4.75
53 55 1.236616 TGTTGAAGGCATCGCACCAG 61.237 55.000 0.00 0.00 0.00 4.00
70 72 1.474077 CCAGTAGCCAACCAATTGCTC 59.526 52.381 0.00 0.00 34.17 4.26
72 74 2.821969 CAGTAGCCAACCAATTGCTCTT 59.178 45.455 0.00 0.00 34.17 2.85
82 84 4.954092 CCAATTGCTCTTCTTGGTAGAC 57.046 45.455 0.00 0.00 35.70 2.59
84 86 4.154918 CCAATTGCTCTTCTTGGTAGACAC 59.845 45.833 0.00 0.00 35.70 3.67
93 95 3.698250 TGGTAGACACACCAACTGC 57.302 52.632 0.00 0.00 45.65 4.40
94 96 0.107831 TGGTAGACACACCAACTGCC 59.892 55.000 0.00 0.00 45.65 4.85
105 107 0.250234 CCAACTGCCAAGATCCGAGA 59.750 55.000 0.00 0.00 0.00 4.04
131 133 9.896645 AAGAACTAACAGATATGATGACACAAT 57.103 29.630 0.00 0.00 0.00 2.71
154 156 0.109532 TCACAAACCCTTCATCGGCA 59.890 50.000 0.00 0.00 0.00 5.69
162 164 0.033920 CCTTCATCGGCATCGGATCA 59.966 55.000 0.00 0.00 36.95 2.92
165 167 1.260544 TCATCGGCATCGGATCAGAT 58.739 50.000 2.13 2.13 36.95 2.90
169 171 1.401905 TCGGCATCGGATCAGATATCG 59.598 52.381 17.36 17.36 36.95 2.92
178 180 3.307512 CGGATCAGATATCGTCGAGGTAG 59.692 52.174 4.85 0.00 0.00 3.18
186 188 1.129917 TCGTCGAGGTAGGGAGAGAT 58.870 55.000 4.85 0.00 0.00 2.75
210 212 7.244886 TCAGAGAGACCTTATTCAAACATGA 57.755 36.000 0.00 0.00 0.00 3.07
214 216 8.105829 AGAGAGACCTTATTCAAACATGACATT 58.894 33.333 0.00 0.00 0.00 2.71
215 217 8.048534 AGAGACCTTATTCAAACATGACATTG 57.951 34.615 0.00 1.94 0.00 2.82
219 221 7.725251 ACCTTATTCAAACATGACATTGTTGT 58.275 30.769 0.00 0.00 39.68 3.32
229 231 1.593196 ACATTGTTGTCACCACCTCG 58.407 50.000 0.00 0.00 0.00 4.63
232 234 0.528901 TTGTTGTCACCACCTCGTCG 60.529 55.000 0.00 0.00 0.00 5.12
272 275 9.883142 ATAGAACCTAAGAGAAAGACAAATGAG 57.117 33.333 0.00 0.00 0.00 2.90
286 289 1.507140 AATGAGATAGGCGGGTTCCA 58.493 50.000 0.00 0.00 0.00 3.53
300 303 1.622312 GGTTCCAACTCCTCTTACCGT 59.378 52.381 0.00 0.00 0.00 4.83
305 308 2.036733 CCAACTCCTCTTACCGTCAACA 59.963 50.000 0.00 0.00 0.00 3.33
337 340 2.684104 GAGAAAAGGAGGGGGCCC 59.316 66.667 15.76 15.76 0.00 5.80
338 341 3.339093 AGAAAAGGAGGGGGCCCG 61.339 66.667 17.79 0.00 41.95 6.13
339 342 3.335729 GAAAAGGAGGGGGCCCGA 61.336 66.667 17.79 0.00 41.95 5.14
376 381 7.122204 AGGGTTGGAAAAACTTAGTATATGCAC 59.878 37.037 0.00 0.00 0.00 4.57
377 382 7.094118 GGGTTGGAAAAACTTAGTATATGCACA 60.094 37.037 0.00 0.00 0.00 4.57
406 411 3.431766 GCTCGTAACCACATATGAGGGTT 60.432 47.826 27.37 27.37 46.17 4.11
409 414 4.407621 TCGTAACCACATATGAGGGTTGAT 59.592 41.667 29.92 16.87 44.27 2.57
440 445 8.236586 CACATTCGGTTCTCAATTCAATTCTTA 58.763 33.333 0.00 0.00 0.00 2.10
445 450 9.840427 TCGGTTCTCAATTCAATTCTTATTTTC 57.160 29.630 0.00 0.00 0.00 2.29
446 451 9.846248 CGGTTCTCAATTCAATTCTTATTTTCT 57.154 29.630 0.00 0.00 0.00 2.52
472 507 9.386122 TCCTAAGAAGAGGCAAGATAATCTTAT 57.614 33.333 0.00 0.00 34.02 1.73
490 525 8.817092 AATCTTATAGAGTAGAGCTATCCCAC 57.183 38.462 0.00 0.00 31.43 4.61
493 528 8.449625 TCTTATAGAGTAGAGCTATCCCACTTT 58.550 37.037 0.00 0.00 31.43 2.66
550 585 5.707298 ACACTCAAAAGTCAGGACAATATGG 59.293 40.000 1.84 0.00 31.71 2.74
560 595 7.220030 AGTCAGGACAATATGGCAGTAATTAG 58.780 38.462 1.84 0.00 0.00 1.73
574 609 5.823045 GCAGTAATTAGGCTTATGTGGAAGT 59.177 40.000 0.00 0.00 0.00 3.01
656 785 0.323360 TTTGCGGGAATCTTCAGGGG 60.323 55.000 0.00 0.00 0.00 4.79
679 808 7.145323 GGGTTTTCTTTTTCATCGAATCTTCA 58.855 34.615 0.00 0.00 0.00 3.02
694 823 3.926058 TCTTCAGGTTATTGGTAGGCC 57.074 47.619 0.00 0.00 0.00 5.19
695 824 3.186283 TCTTCAGGTTATTGGTAGGCCA 58.814 45.455 5.01 0.00 44.38 5.36
696 825 3.785887 TCTTCAGGTTATTGGTAGGCCAT 59.214 43.478 5.01 0.00 45.56 4.40
697 826 3.576078 TCAGGTTATTGGTAGGCCATG 57.424 47.619 5.01 0.00 45.56 3.66
698 827 2.849943 TCAGGTTATTGGTAGGCCATGT 59.150 45.455 5.01 0.00 45.56 3.21
699 828 2.951642 CAGGTTATTGGTAGGCCATGTG 59.048 50.000 5.01 0.00 45.56 3.21
700 829 2.580783 AGGTTATTGGTAGGCCATGTGT 59.419 45.455 5.01 0.00 45.56 3.72
705 834 1.945580 TGGTAGGCCATGTGTGAGTA 58.054 50.000 5.01 0.00 40.46 2.59
707 836 1.470979 GGTAGGCCATGTGTGAGTACG 60.471 57.143 5.01 0.00 34.09 3.67
726 855 0.439985 GTGTGAGTATGTGTGCAGCG 59.560 55.000 0.00 0.00 0.00 5.18
728 857 0.439985 GTGAGTATGTGTGCAGCGTG 59.560 55.000 0.00 0.00 0.00 5.34
729 858 0.033366 TGAGTATGTGTGCAGCGTGT 59.967 50.000 0.00 0.00 0.00 4.49
730 859 1.271102 TGAGTATGTGTGCAGCGTGTA 59.729 47.619 0.00 0.00 0.00 2.90
732 861 0.365523 GTATGTGTGCAGCGTGTACG 59.634 55.000 0.00 0.00 35.67 3.67
739 2087 2.544359 CAGCGTGTACGTGTGTGC 59.456 61.111 0.00 0.00 42.22 4.57
740 2088 3.028019 AGCGTGTACGTGTGTGCG 61.028 61.111 0.00 0.00 42.22 5.34
742 2090 2.862776 GCGTGTACGTGTGTGCGTT 61.863 57.895 0.00 0.00 43.04 4.84
744 2092 0.845135 CGTGTACGTGTGTGCGTTTA 59.155 50.000 0.00 0.00 43.04 2.01
760 2108 9.594038 GTGTGCGTTTATATGTTATAATCAAGG 57.406 33.333 0.00 0.00 0.00 3.61
761 2109 9.332502 TGTGCGTTTATATGTTATAATCAAGGT 57.667 29.630 0.00 0.00 0.00 3.50
819 2167 1.853963 AGGTGCGTGTAGAGGAATCT 58.146 50.000 0.00 0.00 0.00 2.40
912 2260 1.455383 AACAGAGTTGCCCTTTGCCG 61.455 55.000 0.00 0.00 40.16 5.69
916 2264 1.452145 GAGTTGCCCTTTGCCGTGAA 61.452 55.000 0.00 0.00 40.16 3.18
918 2266 2.494530 TTGCCCTTTGCCGTGAACC 61.495 57.895 0.00 0.00 40.16 3.62
943 2297 4.409218 CGAAGCCGACCGACCGAA 62.409 66.667 0.00 0.00 38.22 4.30
950 2308 1.154169 CGACCGACCGAATTCACGA 60.154 57.895 14.98 0.00 35.09 4.35
1201 2559 4.806339 CCCTCGCCTTCTCCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
1202 2560 3.474570 CCTCGCCTTCTCCCCCTG 61.475 72.222 0.00 0.00 0.00 4.45
1433 2793 2.276869 CCCTGCTTTTGGGGCTAAC 58.723 57.895 0.00 0.00 40.97 2.34
1461 2821 9.442047 TTGTTGTTCAATGTTTTGGAATTAAGT 57.558 25.926 0.00 0.00 33.44 2.24
1479 2839 8.999905 AATTAAGTAAAACCTGGACCTGTTTA 57.000 30.769 0.00 2.73 33.76 2.01
1481 2841 6.954487 AAGTAAAACCTGGACCTGTTTAAG 57.046 37.500 0.00 0.00 33.76 1.85
1482 2842 6.009908 AGTAAAACCTGGACCTGTTTAAGT 57.990 37.500 0.00 2.25 33.76 2.24
1483 2843 5.826208 AGTAAAACCTGGACCTGTTTAAGTG 59.174 40.000 0.00 0.00 33.76 3.16
1484 2844 3.945640 AACCTGGACCTGTTTAAGTGT 57.054 42.857 0.00 0.00 0.00 3.55
1489 2849 6.470278 ACCTGGACCTGTTTAAGTGTTATAC 58.530 40.000 0.00 0.00 0.00 1.47
1511 2871 3.121944 CGTTCGAGATTCAGGTTGAACTG 59.878 47.826 0.00 0.00 39.45 3.16
1536 2896 6.337356 CCTTTGAAGCAAAAACTGTAAAGGA 58.663 36.000 0.00 0.00 41.50 3.36
1538 2898 7.495606 CCTTTGAAGCAAAAACTGTAAAGGATT 59.504 33.333 0.00 0.00 41.50 3.01
1540 2900 9.877178 TTTGAAGCAAAAACTGTAAAGGATTTA 57.123 25.926 0.00 0.00 33.09 1.40
1541 2901 9.877178 TTGAAGCAAAAACTGTAAAGGATTTAA 57.123 25.926 0.00 0.00 43.05 1.52
1632 2995 5.421693 AGCAGTGCTATATGGGATAGAAGAG 59.578 44.000 18.11 0.00 36.99 2.85
1639 3002 7.093156 TGCTATATGGGATAGAAGAGATGTTGG 60.093 40.741 0.00 0.00 0.00 3.77
1684 3047 3.940319 TGCCCAGTTTAGCGTTGTTATA 58.060 40.909 0.00 0.00 0.00 0.98
1686 3049 3.242641 GCCCAGTTTAGCGTTGTTATAGC 60.243 47.826 0.00 0.00 0.00 2.97
1691 3054 4.630069 AGTTTAGCGTTGTTATAGCCAGTG 59.370 41.667 0.00 0.00 0.00 3.66
1777 3144 7.040617 CCAGAACCATCCAAGATAAATCATGAG 60.041 40.741 0.09 0.00 0.00 2.90
1937 3311 1.339055 TGAGGCTTTCTCCCATGTTCG 60.339 52.381 0.00 0.00 41.76 3.95
1989 3363 4.277515 ACCCATCTCATATCATGTTCGG 57.722 45.455 0.00 0.00 0.00 4.30
2005 3379 8.492673 TCATGTTCGGGATTATATAGAAATGC 57.507 34.615 0.00 0.00 0.00 3.56
2008 3382 8.997621 TGTTCGGGATTATATAGAAATGCTAC 57.002 34.615 3.26 0.00 0.00 3.58
2009 3383 8.812972 TGTTCGGGATTATATAGAAATGCTACT 58.187 33.333 3.26 0.00 0.00 2.57
2012 3386 9.696572 TCGGGATTATATAGAAATGCTACTAGT 57.303 33.333 0.00 0.00 0.00 2.57
2021 3395 5.978814 AGAAATGCTACTAGTAACCAGTGG 58.021 41.667 7.91 7.91 0.00 4.00
2023 3397 2.205307 GCTACTAGTAACCAGTGGCG 57.795 55.000 9.78 0.00 40.09 5.69
2024 3398 1.202382 GCTACTAGTAACCAGTGGCGG 60.202 57.143 9.78 0.00 40.09 6.13
2025 3399 2.372264 CTACTAGTAACCAGTGGCGGA 58.628 52.381 9.78 0.00 0.00 5.54
2026 3400 1.183549 ACTAGTAACCAGTGGCGGAG 58.816 55.000 9.78 2.33 0.00 4.63
2044 3418 3.520187 GCTTGGGCTGATTTTGTGG 57.480 52.632 0.00 0.00 35.22 4.17
2045 3419 0.968405 GCTTGGGCTGATTTTGTGGA 59.032 50.000 0.00 0.00 35.22 4.02
2046 3420 1.067354 GCTTGGGCTGATTTTGTGGAG 60.067 52.381 0.00 0.00 35.22 3.86
2047 3421 1.547372 CTTGGGCTGATTTTGTGGAGG 59.453 52.381 0.00 0.00 0.00 4.30
2048 3422 0.251742 TGGGCTGATTTTGTGGAGGG 60.252 55.000 0.00 0.00 0.00 4.30
2049 3423 0.972471 GGGCTGATTTTGTGGAGGGG 60.972 60.000 0.00 0.00 0.00 4.79
2050 3424 1.607801 GGCTGATTTTGTGGAGGGGC 61.608 60.000 0.00 0.00 0.00 5.80
2051 3425 0.899717 GCTGATTTTGTGGAGGGGCA 60.900 55.000 0.00 0.00 0.00 5.36
2052 3426 1.631405 CTGATTTTGTGGAGGGGCAA 58.369 50.000 0.00 0.00 0.00 4.52
2053 3427 1.547372 CTGATTTTGTGGAGGGGCAAG 59.453 52.381 0.00 0.00 0.00 4.01
2054 3428 1.146774 TGATTTTGTGGAGGGGCAAGA 59.853 47.619 0.00 0.00 0.00 3.02
2055 3429 2.247358 GATTTTGTGGAGGGGCAAGAA 58.753 47.619 0.00 0.00 0.00 2.52
2056 3430 2.166907 TTTTGTGGAGGGGCAAGAAA 57.833 45.000 0.00 0.00 0.00 2.52
2057 3431 2.397044 TTTGTGGAGGGGCAAGAAAT 57.603 45.000 0.00 0.00 0.00 2.17
2058 3432 3.534357 TTTGTGGAGGGGCAAGAAATA 57.466 42.857 0.00 0.00 0.00 1.40
2059 3433 3.756082 TTGTGGAGGGGCAAGAAATAT 57.244 42.857 0.00 0.00 0.00 1.28
2060 3434 3.017048 TGTGGAGGGGCAAGAAATATG 57.983 47.619 0.00 0.00 0.00 1.78
2061 3435 2.580322 TGTGGAGGGGCAAGAAATATGA 59.420 45.455 0.00 0.00 0.00 2.15
2062 3436 2.952310 GTGGAGGGGCAAGAAATATGAC 59.048 50.000 0.00 0.00 0.00 3.06
2063 3437 2.852449 TGGAGGGGCAAGAAATATGACT 59.148 45.455 0.00 0.00 0.00 3.41
2064 3438 3.269381 TGGAGGGGCAAGAAATATGACTT 59.731 43.478 0.00 0.00 0.00 3.01
2065 3439 4.264352 TGGAGGGGCAAGAAATATGACTTT 60.264 41.667 0.00 0.00 0.00 2.66
2066 3440 5.044476 TGGAGGGGCAAGAAATATGACTTTA 60.044 40.000 0.00 0.00 0.00 1.85
2067 3441 5.532779 GGAGGGGCAAGAAATATGACTTTAG 59.467 44.000 0.00 0.00 0.00 1.85
2068 3442 5.449553 AGGGGCAAGAAATATGACTTTAGG 58.550 41.667 0.00 0.00 0.00 2.69
2069 3443 4.038042 GGGGCAAGAAATATGACTTTAGGC 59.962 45.833 0.00 0.00 0.00 3.93
2070 3444 4.889995 GGGCAAGAAATATGACTTTAGGCT 59.110 41.667 0.00 0.00 0.00 4.58
2071 3445 5.221126 GGGCAAGAAATATGACTTTAGGCTG 60.221 44.000 0.00 0.00 0.00 4.85
2072 3446 5.590259 GGCAAGAAATATGACTTTAGGCTGA 59.410 40.000 0.00 0.00 0.00 4.26
2073 3447 6.264067 GGCAAGAAATATGACTTTAGGCTGAT 59.736 38.462 0.00 0.00 0.00 2.90
2074 3448 7.201857 GGCAAGAAATATGACTTTAGGCTGATT 60.202 37.037 0.00 0.00 0.00 2.57
2075 3449 8.193438 GCAAGAAATATGACTTTAGGCTGATTT 58.807 33.333 0.00 0.00 0.00 2.17
2082 3456 6.817765 TGACTTTAGGCTGATTTTAACTGG 57.182 37.500 0.00 0.00 0.00 4.00
2083 3457 5.183140 TGACTTTAGGCTGATTTTAACTGGC 59.817 40.000 0.00 0.00 0.00 4.85
2084 3458 5.076873 ACTTTAGGCTGATTTTAACTGGCA 58.923 37.500 0.00 0.00 35.11 4.92
2085 3459 5.716703 ACTTTAGGCTGATTTTAACTGGCAT 59.283 36.000 0.00 0.00 35.11 4.40
2086 3460 6.889722 ACTTTAGGCTGATTTTAACTGGCATA 59.110 34.615 0.00 0.00 35.11 3.14
2087 3461 7.561356 ACTTTAGGCTGATTTTAACTGGCATAT 59.439 33.333 0.00 0.00 35.11 1.78
2088 3462 5.779529 AGGCTGATTTTAACTGGCATATG 57.220 39.130 0.00 0.00 35.11 1.78
2089 3463 4.586001 AGGCTGATTTTAACTGGCATATGG 59.414 41.667 4.56 0.00 35.11 2.74
2090 3464 4.262164 GGCTGATTTTAACTGGCATATGGG 60.262 45.833 4.56 0.00 33.50 4.00
2091 3465 4.797275 GCTGATTTTAACTGGCATATGGGC 60.797 45.833 4.56 0.00 43.73 5.36
2092 3466 4.545678 TGATTTTAACTGGCATATGGGCT 58.454 39.130 4.56 0.00 43.83 5.19
2093 3467 4.341806 TGATTTTAACTGGCATATGGGCTG 59.658 41.667 4.56 4.74 45.01 4.85
2094 3468 3.660970 TTTAACTGGCATATGGGCTGA 57.339 42.857 4.56 0.00 42.62 4.26
2095 3469 3.660970 TTAACTGGCATATGGGCTGAA 57.339 42.857 4.56 0.00 42.62 3.02
2096 3470 2.761786 AACTGGCATATGGGCTGAAT 57.238 45.000 4.56 0.00 42.62 2.57
2097 3471 3.882102 AACTGGCATATGGGCTGAATA 57.118 42.857 4.56 0.00 42.62 1.75
2098 3472 3.146104 ACTGGCATATGGGCTGAATAC 57.854 47.619 4.56 0.00 42.62 1.89
2099 3473 2.713167 ACTGGCATATGGGCTGAATACT 59.287 45.455 4.56 0.00 42.62 2.12
2100 3474 3.909995 ACTGGCATATGGGCTGAATACTA 59.090 43.478 4.56 0.00 42.62 1.82
2101 3475 4.019860 ACTGGCATATGGGCTGAATACTAG 60.020 45.833 4.56 0.00 42.62 2.57
2102 3476 3.264193 TGGCATATGGGCTGAATACTAGG 59.736 47.826 4.56 0.00 43.83 3.02
2103 3477 3.370953 GGCATATGGGCTGAATACTAGGG 60.371 52.174 4.56 0.00 39.42 3.53
2104 3478 3.370953 GCATATGGGCTGAATACTAGGGG 60.371 52.174 4.56 0.00 0.00 4.79
2105 3479 2.815357 ATGGGCTGAATACTAGGGGA 57.185 50.000 0.00 0.00 0.00 4.81
2106 3480 2.815357 TGGGCTGAATACTAGGGGAT 57.185 50.000 0.00 0.00 0.00 3.85
2107 3481 3.935240 TGGGCTGAATACTAGGGGATA 57.065 47.619 0.00 0.00 0.00 2.59
2108 3482 4.435977 TGGGCTGAATACTAGGGGATAT 57.564 45.455 0.00 0.00 0.00 1.63
2109 3483 5.562080 TGGGCTGAATACTAGGGGATATA 57.438 43.478 0.00 0.00 0.00 0.86
2110 3484 6.118042 TGGGCTGAATACTAGGGGATATAT 57.882 41.667 0.00 0.00 0.00 0.86
2111 3485 5.905331 TGGGCTGAATACTAGGGGATATATG 59.095 44.000 0.00 0.00 0.00 1.78
2112 3486 5.221742 GGGCTGAATACTAGGGGATATATGC 60.222 48.000 0.00 0.00 0.00 3.14
2113 3487 5.604650 GGCTGAATACTAGGGGATATATGCT 59.395 44.000 4.09 0.00 0.00 3.79
2114 3488 6.782988 GGCTGAATACTAGGGGATATATGCTA 59.217 42.308 4.09 0.00 0.00 3.49
2115 3489 7.039363 GGCTGAATACTAGGGGATATATGCTAG 60.039 44.444 4.09 2.12 0.00 3.42
2116 3490 7.507616 GCTGAATACTAGGGGATATATGCTAGT 59.492 40.741 4.09 7.59 0.00 2.57
2117 3491 9.427821 CTGAATACTAGGGGATATATGCTAGTT 57.572 37.037 10.20 0.00 0.00 2.24
2118 3492 9.784376 TGAATACTAGGGGATATATGCTAGTTT 57.216 33.333 10.20 2.61 0.00 2.66
2122 3496 8.368962 ACTAGGGGATATATGCTAGTTTTCTC 57.631 38.462 4.09 0.00 0.00 2.87
2123 3497 7.956315 ACTAGGGGATATATGCTAGTTTTCTCA 59.044 37.037 4.09 0.00 0.00 3.27
2124 3498 7.821134 AGGGGATATATGCTAGTTTTCTCAT 57.179 36.000 4.09 0.00 0.00 2.90
2125 3499 7.628234 AGGGGATATATGCTAGTTTTCTCATG 58.372 38.462 4.09 0.00 0.00 3.07
2126 3500 6.825721 GGGGATATATGCTAGTTTTCTCATGG 59.174 42.308 4.09 0.00 0.00 3.66
2127 3501 6.825721 GGGATATATGCTAGTTTTCTCATGGG 59.174 42.308 4.09 0.00 0.00 4.00
2128 3502 6.317391 GGATATATGCTAGTTTTCTCATGGGC 59.683 42.308 0.00 0.00 0.00 5.36
2129 3503 3.659183 ATGCTAGTTTTCTCATGGGCT 57.341 42.857 0.00 0.00 0.00 5.19
2130 3504 2.715046 TGCTAGTTTTCTCATGGGCTG 58.285 47.619 0.00 0.00 0.00 4.85
2131 3505 2.019984 GCTAGTTTTCTCATGGGCTGG 58.980 52.381 0.00 0.00 0.00 4.85
2132 3506 2.648059 CTAGTTTTCTCATGGGCTGGG 58.352 52.381 0.00 0.00 0.00 4.45
2133 3507 0.040204 AGTTTTCTCATGGGCTGGGG 59.960 55.000 0.00 0.00 0.00 4.96
2134 3508 0.972471 GTTTTCTCATGGGCTGGGGG 60.972 60.000 0.00 0.00 0.00 5.40
2153 3527 2.999063 GCAATGGCCCAGGTTGCT 60.999 61.111 13.58 0.00 43.56 3.91
2154 3528 3.010413 GCAATGGCCCAGGTTGCTC 62.010 63.158 13.58 0.00 43.56 4.26
2155 3529 1.304713 CAATGGCCCAGGTTGCTCT 60.305 57.895 0.00 0.00 0.00 4.09
2156 3530 1.000396 AATGGCCCAGGTTGCTCTC 60.000 57.895 0.00 0.00 0.00 3.20
2157 3531 2.505364 AATGGCCCAGGTTGCTCTCC 62.505 60.000 0.00 0.00 0.00 3.71
2158 3532 3.650950 GGCCCAGGTTGCTCTCCA 61.651 66.667 0.00 0.00 0.00 3.86
2159 3533 2.360475 GCCCAGGTTGCTCTCCAC 60.360 66.667 0.00 0.00 0.00 4.02
2160 3534 2.900106 GCCCAGGTTGCTCTCCACT 61.900 63.158 0.00 0.00 0.00 4.00
2161 3535 1.553690 GCCCAGGTTGCTCTCCACTA 61.554 60.000 0.00 0.00 0.00 2.74
2162 3536 0.984230 CCCAGGTTGCTCTCCACTAA 59.016 55.000 0.00 0.00 0.00 2.24
2163 3537 1.065854 CCCAGGTTGCTCTCCACTAAG 60.066 57.143 0.00 0.00 0.00 2.18
2164 3538 1.625818 CCAGGTTGCTCTCCACTAAGT 59.374 52.381 0.00 0.00 0.00 2.24
2165 3539 2.039084 CCAGGTTGCTCTCCACTAAGTT 59.961 50.000 0.00 0.00 0.00 2.66
2166 3540 3.330267 CAGGTTGCTCTCCACTAAGTTC 58.670 50.000 0.00 0.00 0.00 3.01
2167 3541 2.303311 AGGTTGCTCTCCACTAAGTTCC 59.697 50.000 0.00 0.00 0.00 3.62
2168 3542 2.338500 GTTGCTCTCCACTAAGTTCCG 58.662 52.381 0.00 0.00 0.00 4.30
2169 3543 0.246635 TGCTCTCCACTAAGTTCCGC 59.753 55.000 0.00 0.00 0.00 5.54
2170 3544 0.460459 GCTCTCCACTAAGTTCCGCC 60.460 60.000 0.00 0.00 0.00 6.13
2171 3545 0.895530 CTCTCCACTAAGTTCCGCCA 59.104 55.000 0.00 0.00 0.00 5.69
2172 3546 0.606604 TCTCCACTAAGTTCCGCCAC 59.393 55.000 0.00 0.00 0.00 5.01
2173 3547 0.608640 CTCCACTAAGTTCCGCCACT 59.391 55.000 0.00 0.00 0.00 4.00
2174 3548 0.320374 TCCACTAAGTTCCGCCACTG 59.680 55.000 0.00 0.00 0.00 3.66
2239 3613 4.671831 TGGAAGATTTGTTGCCATAAGGA 58.328 39.130 0.00 0.00 36.89 3.36
2259 3634 3.263425 GGAGATGTTCACTCAAGGGGTAA 59.737 47.826 0.00 0.00 36.26 2.85
2279 3654 3.362040 CCAAGGGGAGATGTTGCAA 57.638 52.632 0.00 0.00 35.59 4.08
2280 3655 1.856629 CCAAGGGGAGATGTTGCAAT 58.143 50.000 0.59 0.00 35.59 3.56
2281 3656 2.181975 CCAAGGGGAGATGTTGCAATT 58.818 47.619 0.59 0.00 35.59 2.32
2282 3657 2.568509 CCAAGGGGAGATGTTGCAATTT 59.431 45.455 0.59 0.00 35.59 1.82
2283 3658 3.368739 CCAAGGGGAGATGTTGCAATTTC 60.369 47.826 0.59 2.73 35.59 2.17
2284 3659 3.173953 AGGGGAGATGTTGCAATTTCA 57.826 42.857 0.59 0.00 0.00 2.69
2285 3660 3.094572 AGGGGAGATGTTGCAATTTCAG 58.905 45.455 0.59 0.00 0.00 3.02
2286 3661 2.167075 GGGGAGATGTTGCAATTTCAGG 59.833 50.000 0.59 0.00 0.00 3.86
2287 3662 2.827921 GGGAGATGTTGCAATTTCAGGT 59.172 45.455 0.59 0.00 0.00 4.00
2288 3663 4.016444 GGGAGATGTTGCAATTTCAGGTA 58.984 43.478 0.59 0.00 0.00 3.08
2289 3664 4.142381 GGGAGATGTTGCAATTTCAGGTAC 60.142 45.833 0.59 0.00 0.00 3.34
2290 3665 4.142381 GGAGATGTTGCAATTTCAGGTACC 60.142 45.833 2.73 2.73 0.00 3.34
2291 3666 4.666512 AGATGTTGCAATTTCAGGTACCT 58.333 39.130 9.21 9.21 0.00 3.08
2292 3667 5.079643 AGATGTTGCAATTTCAGGTACCTT 58.920 37.500 13.15 0.00 0.00 3.50
2293 3668 6.245408 AGATGTTGCAATTTCAGGTACCTTA 58.755 36.000 13.15 0.20 0.00 2.69
2294 3669 6.891908 AGATGTTGCAATTTCAGGTACCTTAT 59.108 34.615 13.15 3.27 0.00 1.73
2295 3670 6.266168 TGTTGCAATTTCAGGTACCTTATG 57.734 37.500 13.15 8.13 0.00 1.90
2296 3671 6.007076 TGTTGCAATTTCAGGTACCTTATGA 58.993 36.000 13.15 4.76 0.00 2.15
2297 3672 6.150976 TGTTGCAATTTCAGGTACCTTATGAG 59.849 38.462 13.15 0.00 0.00 2.90
2315 3690 9.736023 CCTTATGAGGTGCTCAAATAAATTAAC 57.264 33.333 0.00 0.00 44.04 2.01
2320 3695 9.421806 TGAGGTGCTCAAATAAATTAACAAATG 57.578 29.630 0.00 0.00 37.57 2.32
2321 3696 9.423061 GAGGTGCTCAAATAAATTAACAAATGT 57.577 29.630 0.00 0.00 0.00 2.71
2428 3804 5.042463 TCCCGCTTTGATGGTTATATTCA 57.958 39.130 0.00 0.00 0.00 2.57
2546 3925 2.419990 CCTCCGGTCAAATGCAGATGTA 60.420 50.000 0.00 0.00 0.00 2.29
2645 4024 9.144298 ACAGGTACATAAGCATAGTACATAACT 57.856 33.333 0.00 0.00 39.78 2.24
2741 4329 4.098914 AGTTGGCATGAAACTGAACCTA 57.901 40.909 12.04 0.00 36.52 3.08
2742 4330 3.821033 AGTTGGCATGAAACTGAACCTAC 59.179 43.478 12.04 1.85 36.52 3.18
2824 4412 0.027586 AGACAAAAGCGCAACGTGTC 59.972 50.000 19.61 19.61 39.09 3.67
2825 4413 0.928451 GACAAAAGCGCAACGTGTCC 60.928 55.000 11.47 0.00 33.95 4.02
2827 4415 0.317770 CAAAAGCGCAACGTGTCCAT 60.318 50.000 11.47 0.00 0.00 3.41
2880 4468 5.762045 ACATCACAAATTGTAGTGTGCTTC 58.238 37.500 12.64 0.00 43.91 3.86
2881 4469 5.299028 ACATCACAAATTGTAGTGTGCTTCA 59.701 36.000 12.64 0.00 43.91 3.02
3014 4602 7.832503 ATTTGCCAAACAGACTATTAATTGC 57.167 32.000 0.00 0.00 0.00 3.56
3015 4603 5.323371 TGCCAAACAGACTATTAATTGCC 57.677 39.130 0.00 0.00 0.00 4.52
3139 4727 7.491048 CAGGCGGCTTTATTTTTAAATGTACAT 59.509 33.333 9.66 1.41 0.00 2.29
3247 4835 2.539302 ACTTGGGGCTTGCATTATTGT 58.461 42.857 0.00 0.00 0.00 2.71
3274 4862 2.758736 ACTGAGTTCTGACATCCAGC 57.241 50.000 0.00 0.00 42.62 4.85
3300 4888 5.048782 GTCACTATGATGGTTGCACAAAAGA 60.049 40.000 0.00 0.00 0.00 2.52
3451 5039 0.966875 TGAACACATGCCCCAGATGC 60.967 55.000 0.00 0.00 0.00 3.91
3454 5042 3.349304 ACATGCCCCAGATGCCCA 61.349 61.111 0.00 0.00 0.00 5.36
3480 5068 2.082231 AGCAGCACATGTGATCTCAAC 58.918 47.619 29.80 9.56 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.745845 GTTCTGCGGCATGGTCAGAT 60.746 55.000 1.75 0.00 36.81 2.90
1 2 1.375908 GTTCTGCGGCATGGTCAGA 60.376 57.895 1.75 0.00 35.30 3.27
2 3 1.236616 TTGTTCTGCGGCATGGTCAG 61.237 55.000 1.75 0.00 0.00 3.51
3 4 1.228094 TTGTTCTGCGGCATGGTCA 60.228 52.632 1.75 0.00 0.00 4.02
4 5 1.210155 GTTGTTCTGCGGCATGGTC 59.790 57.895 1.75 0.00 0.00 4.02
5 6 1.528076 TGTTGTTCTGCGGCATGGT 60.528 52.632 1.75 0.00 0.00 3.55
6 7 1.081242 GTGTTGTTCTGCGGCATGG 60.081 57.895 1.75 0.00 0.00 3.66
7 8 1.440850 CGTGTTGTTCTGCGGCATG 60.441 57.895 1.75 0.00 0.00 4.06
8 9 2.616330 CCGTGTTGTTCTGCGGCAT 61.616 57.895 1.75 0.00 37.69 4.40
9 10 3.276091 CCGTGTTGTTCTGCGGCA 61.276 61.111 1.29 1.29 37.69 5.69
10 11 2.443957 CTTCCGTGTTGTTCTGCGGC 62.444 60.000 0.00 0.00 43.45 6.53
11 12 0.878523 TCTTCCGTGTTGTTCTGCGG 60.879 55.000 0.00 0.00 44.95 5.69
12 13 0.934496 TTCTTCCGTGTTGTTCTGCG 59.066 50.000 0.00 0.00 0.00 5.18
13 14 2.210116 TCTTCTTCCGTGTTGTTCTGC 58.790 47.619 0.00 0.00 0.00 4.26
25 26 3.064545 CGATGCCTTCAACATCTTCTTCC 59.935 47.826 0.00 0.00 41.45 3.46
43 44 1.369091 GGTTGGCTACTGGTGCGATG 61.369 60.000 0.00 0.00 0.00 3.84
44 45 1.078426 GGTTGGCTACTGGTGCGAT 60.078 57.895 0.00 0.00 0.00 4.58
53 55 3.084786 AGAAGAGCAATTGGTTGGCTAC 58.915 45.455 12.13 0.00 35.83 3.58
82 84 0.883833 GGATCTTGGCAGTTGGTGTG 59.116 55.000 0.00 0.00 0.00 3.82
84 86 0.321564 TCGGATCTTGGCAGTTGGTG 60.322 55.000 0.00 0.00 0.00 4.17
92 94 2.682155 AGTTCTTCTCGGATCTTGGC 57.318 50.000 0.00 0.00 0.00 4.52
93 95 5.073311 TGTTAGTTCTTCTCGGATCTTGG 57.927 43.478 0.00 0.00 0.00 3.61
94 96 5.955488 TCTGTTAGTTCTTCTCGGATCTTG 58.045 41.667 0.00 0.00 0.00 3.02
105 107 9.896645 ATTGTGTCATCATATCTGTTAGTTCTT 57.103 29.630 0.00 0.00 0.00 2.52
131 133 2.028112 CCGATGAAGGGTTTGTGAGAGA 60.028 50.000 0.00 0.00 0.00 3.10
154 156 2.939756 CCTCGACGATATCTGATCCGAT 59.060 50.000 15.91 4.93 0.00 4.18
162 164 2.905085 TCTCCCTACCTCGACGATATCT 59.095 50.000 0.00 0.00 0.00 1.98
165 167 2.323599 TCTCTCCCTACCTCGACGATA 58.676 52.381 0.00 0.00 0.00 2.92
169 171 2.105134 TCTGATCTCTCCCTACCTCGAC 59.895 54.545 0.00 0.00 0.00 4.20
178 180 3.312736 AAGGTCTCTCTGATCTCTCCC 57.687 52.381 0.00 0.00 34.48 4.30
186 188 7.099764 GTCATGTTTGAATAAGGTCTCTCTGA 58.900 38.462 0.00 0.00 32.48 3.27
219 221 2.558286 GGTGTCGACGAGGTGGTGA 61.558 63.158 11.62 0.00 0.00 4.02
229 231 1.952102 TATTCCCTGGCGGTGTCGAC 61.952 60.000 9.11 9.11 46.45 4.20
232 234 0.539986 TTCTATTCCCTGGCGGTGTC 59.460 55.000 0.00 0.00 0.00 3.67
240 242 7.093289 TGTCTTTCTCTTAGGTTCTATTCCCTG 60.093 40.741 0.00 0.00 32.08 4.45
272 275 0.179054 GGAGTTGGAACCCGCCTATC 60.179 60.000 0.00 0.00 0.00 2.08
286 289 3.244112 CCTTGTTGACGGTAAGAGGAGTT 60.244 47.826 0.00 0.00 0.00 3.01
317 320 1.304617 GCCCCCTCCTTTTCTCCTG 59.695 63.158 0.00 0.00 0.00 3.86
322 325 3.335729 TCGGGCCCCCTCCTTTTC 61.336 66.667 18.66 0.00 0.00 2.29
338 341 3.787001 AACCCTAGCCGCTGCCTC 61.787 66.667 2.16 0.00 38.69 4.70
339 342 4.101448 CAACCCTAGCCGCTGCCT 62.101 66.667 2.16 0.00 38.69 4.75
341 344 3.622060 TTCCAACCCTAGCCGCTGC 62.622 63.158 2.16 0.00 37.95 5.25
342 345 0.608035 TTTTCCAACCCTAGCCGCTG 60.608 55.000 2.16 0.00 0.00 5.18
344 347 0.242825 GTTTTTCCAACCCTAGCCGC 59.757 55.000 0.00 0.00 0.00 6.53
353 358 9.685828 TTTGTGCATATACTAAGTTTTTCCAAC 57.314 29.630 0.00 0.00 0.00 3.77
386 391 3.770388 TCAACCCTCATATGTGGTTACGA 59.230 43.478 23.05 17.23 40.31 3.43
388 393 4.275936 GCATCAACCCTCATATGTGGTTAC 59.724 45.833 23.05 13.91 40.31 2.50
394 399 2.241941 TGTGGCATCAACCCTCATATGT 59.758 45.455 1.90 0.00 0.00 2.29
406 411 1.164411 GAACCGAATGTGTGGCATCA 58.836 50.000 0.00 0.00 36.67 3.07
409 414 0.107643 TGAGAACCGAATGTGTGGCA 59.892 50.000 0.00 0.00 0.00 4.92
440 445 6.380079 TCTTGCCTCTTCTTAGGAGAAAAT 57.620 37.500 0.00 0.00 41.19 1.82
445 450 7.301868 AGATTATCTTGCCTCTTCTTAGGAG 57.698 40.000 0.00 0.00 39.15 3.69
446 451 7.682787 AAGATTATCTTGCCTCTTCTTAGGA 57.317 36.000 6.67 0.00 35.48 2.94
472 507 6.014771 TGAAAGTGGGATAGCTCTACTCTA 57.985 41.667 0.00 0.00 0.00 2.43
475 510 6.268847 CCTATTGAAAGTGGGATAGCTCTACT 59.731 42.308 0.00 0.00 0.00 2.57
550 585 5.823045 ACTTCCACATAAGCCTAATTACTGC 59.177 40.000 0.00 0.00 0.00 4.40
560 595 5.858381 TGATATCTCACTTCCACATAAGCC 58.142 41.667 3.98 0.00 0.00 4.35
644 773 6.816136 TGAAAAAGAAAACCCCTGAAGATTC 58.184 36.000 0.00 0.00 0.00 2.52
656 785 7.862873 ACCTGAAGATTCGATGAAAAAGAAAAC 59.137 33.333 0.00 0.00 0.00 2.43
694 823 3.013276 ACTCACACGTACTCACACATG 57.987 47.619 0.00 0.00 0.00 3.21
695 824 4.217767 ACATACTCACACGTACTCACACAT 59.782 41.667 0.00 0.00 0.00 3.21
696 825 3.566742 ACATACTCACACGTACTCACACA 59.433 43.478 0.00 0.00 0.00 3.72
697 826 3.912563 CACATACTCACACGTACTCACAC 59.087 47.826 0.00 0.00 0.00 3.82
698 827 3.566742 ACACATACTCACACGTACTCACA 59.433 43.478 0.00 0.00 0.00 3.58
699 828 3.912563 CACACATACTCACACGTACTCAC 59.087 47.826 0.00 0.00 0.00 3.51
700 829 3.610821 GCACACATACTCACACGTACTCA 60.611 47.826 0.00 0.00 0.00 3.41
705 834 1.783284 CTGCACACATACTCACACGT 58.217 50.000 0.00 0.00 0.00 4.49
707 836 0.439985 CGCTGCACACATACTCACAC 59.560 55.000 0.00 0.00 0.00 3.82
732 861 9.923786 TTGATTATAACATATAAACGCACACAC 57.076 29.630 0.00 0.00 0.00 3.82
795 2143 4.339872 TTCCTCTACACGCACCTAAAAA 57.660 40.909 0.00 0.00 0.00 1.94
796 2144 4.222145 AGATTCCTCTACACGCACCTAAAA 59.778 41.667 0.00 0.00 0.00 1.52
797 2145 3.767673 AGATTCCTCTACACGCACCTAAA 59.232 43.478 0.00 0.00 0.00 1.85
798 2146 3.362706 AGATTCCTCTACACGCACCTAA 58.637 45.455 0.00 0.00 0.00 2.69
799 2147 3.014304 AGATTCCTCTACACGCACCTA 57.986 47.619 0.00 0.00 0.00 3.08
800 2148 1.853963 AGATTCCTCTACACGCACCT 58.146 50.000 0.00 0.00 0.00 4.00
912 2260 0.733223 GCTTCGAGTCTCCGGTTCAC 60.733 60.000 0.00 0.00 0.00 3.18
916 2264 3.441290 CGGCTTCGAGTCTCCGGT 61.441 66.667 0.00 0.00 38.35 5.28
918 2266 2.100603 GTCGGCTTCGAGTCTCCG 59.899 66.667 9.47 9.47 44.17 4.63
927 2281 1.419107 GAATTCGGTCGGTCGGCTTC 61.419 60.000 0.00 0.00 0.00 3.86
943 2297 1.215647 GACCAGTCGCCTCGTGAAT 59.784 57.895 0.00 0.00 0.00 2.57
1094 2452 3.822192 CCTCGTCCGCGTCCATCA 61.822 66.667 4.92 0.00 39.49 3.07
1201 2559 1.123861 AGCAGCAGAGGTCAGGAACA 61.124 55.000 0.00 0.00 0.00 3.18
1202 2560 0.673022 CAGCAGCAGAGGTCAGGAAC 60.673 60.000 0.00 0.00 0.00 3.62
1295 2653 4.047059 GTTGCGGTCGGACTCGGA 62.047 66.667 16.76 12.92 36.95 4.55
1409 2769 1.459348 CCCAAAAGCAGGGTGGGTT 60.459 57.895 6.61 0.00 46.03 4.11
1459 2819 5.826208 CACTTAAACAGGTCCAGGTTTTACT 59.174 40.000 14.57 0.00 38.17 2.24
1461 2821 5.757988 ACACTTAAACAGGTCCAGGTTTTA 58.242 37.500 14.57 7.16 38.17 1.52
1479 2839 6.034591 CCTGAATCTCGAACGTATAACACTT 58.965 40.000 0.00 0.00 0.00 3.16
1481 2841 5.338365 ACCTGAATCTCGAACGTATAACAC 58.662 41.667 0.00 0.00 0.00 3.32
1482 2842 5.571784 ACCTGAATCTCGAACGTATAACA 57.428 39.130 0.00 0.00 0.00 2.41
1483 2843 6.032094 TCAACCTGAATCTCGAACGTATAAC 58.968 40.000 0.00 0.00 0.00 1.89
1484 2844 6.198650 TCAACCTGAATCTCGAACGTATAA 57.801 37.500 0.00 0.00 0.00 0.98
1489 2849 3.121944 CAGTTCAACCTGAATCTCGAACG 59.878 47.826 0.00 0.00 38.79 3.95
1511 2871 5.006649 CCTTTACAGTTTTTGCTTCAAAGGC 59.993 40.000 0.00 0.00 34.72 4.35
1536 2896 9.823647 CTGAATCCACATCTGTACTACTTAAAT 57.176 33.333 0.00 0.00 0.00 1.40
1538 2898 8.589701 TCTGAATCCACATCTGTACTACTTAA 57.410 34.615 0.00 0.00 0.00 1.85
1540 2900 7.482169 TTCTGAATCCACATCTGTACTACTT 57.518 36.000 0.00 0.00 0.00 2.24
1541 2901 7.482169 TTTCTGAATCCACATCTGTACTACT 57.518 36.000 0.00 0.00 0.00 2.57
1591 2954 6.550854 AGCACTGCTTCTCTTCTAGATAGAAT 59.449 38.462 14.97 2.52 37.35 2.40
1612 2975 7.416964 ACATCTCTTCTATCCCATATAGCAC 57.583 40.000 0.00 0.00 0.00 4.40
1632 2995 2.092323 GCAAGGGAAGGTACCAACATC 58.908 52.381 15.94 6.57 0.00 3.06
1639 3002 3.451178 TGTGATAGAGCAAGGGAAGGTAC 59.549 47.826 0.00 0.00 0.00 3.34
1686 3049 2.033801 GCATTTGGTATGCTAGCACTGG 59.966 50.000 22.07 5.16 41.52 4.00
1777 3144 0.595095 ACTGACCAGACGTCGTTACC 59.405 55.000 10.46 0.65 45.23 2.85
1916 3290 2.363683 GAACATGGGAGAAAGCCTCAG 58.636 52.381 0.00 0.00 43.76 3.35
1937 3311 6.624352 TTAATCTTAATGCCTGATGCTGAC 57.376 37.500 0.00 0.00 42.00 3.51
2005 3379 2.358267 CTCCGCCACTGGTTACTAGTAG 59.642 54.545 0.05 0.00 0.00 2.57
2008 3382 0.179108 GCTCCGCCACTGGTTACTAG 60.179 60.000 0.00 0.00 0.00 2.57
2009 3383 0.613853 AGCTCCGCCACTGGTTACTA 60.614 55.000 0.00 0.00 0.00 1.82
2010 3384 1.481056 AAGCTCCGCCACTGGTTACT 61.481 55.000 0.00 0.00 0.00 2.24
2011 3385 1.003718 AAGCTCCGCCACTGGTTAC 60.004 57.895 0.00 0.00 0.00 2.50
2012 3386 1.003839 CAAGCTCCGCCACTGGTTA 60.004 57.895 0.00 0.00 0.00 2.85
2013 3387 2.281761 CAAGCTCCGCCACTGGTT 60.282 61.111 0.00 0.00 0.00 3.67
2014 3388 4.335647 CCAAGCTCCGCCACTGGT 62.336 66.667 0.00 0.00 0.00 4.00
2026 3400 0.968405 TCCACAAAATCAGCCCAAGC 59.032 50.000 0.00 0.00 40.32 4.01
2027 3401 1.547372 CCTCCACAAAATCAGCCCAAG 59.453 52.381 0.00 0.00 0.00 3.61
2028 3402 1.631405 CCTCCACAAAATCAGCCCAA 58.369 50.000 0.00 0.00 0.00 4.12
2029 3403 0.251742 CCCTCCACAAAATCAGCCCA 60.252 55.000 0.00 0.00 0.00 5.36
2030 3404 0.972471 CCCCTCCACAAAATCAGCCC 60.972 60.000 0.00 0.00 0.00 5.19
2031 3405 1.607801 GCCCCTCCACAAAATCAGCC 61.608 60.000 0.00 0.00 0.00 4.85
2032 3406 0.899717 TGCCCCTCCACAAAATCAGC 60.900 55.000 0.00 0.00 0.00 4.26
2033 3407 1.547372 CTTGCCCCTCCACAAAATCAG 59.453 52.381 0.00 0.00 0.00 2.90
2034 3408 1.146774 TCTTGCCCCTCCACAAAATCA 59.853 47.619 0.00 0.00 0.00 2.57
2035 3409 1.923356 TCTTGCCCCTCCACAAAATC 58.077 50.000 0.00 0.00 0.00 2.17
2036 3410 2.397044 TTCTTGCCCCTCCACAAAAT 57.603 45.000 0.00 0.00 0.00 1.82
2037 3411 2.166907 TTTCTTGCCCCTCCACAAAA 57.833 45.000 0.00 0.00 0.00 2.44
2038 3412 2.397044 ATTTCTTGCCCCTCCACAAA 57.603 45.000 0.00 0.00 0.00 2.83
2039 3413 3.011144 TCATATTTCTTGCCCCTCCACAA 59.989 43.478 0.00 0.00 0.00 3.33
2040 3414 2.580322 TCATATTTCTTGCCCCTCCACA 59.420 45.455 0.00 0.00 0.00 4.17
2041 3415 2.952310 GTCATATTTCTTGCCCCTCCAC 59.048 50.000 0.00 0.00 0.00 4.02
2042 3416 2.852449 AGTCATATTTCTTGCCCCTCCA 59.148 45.455 0.00 0.00 0.00 3.86
2043 3417 3.584733 AGTCATATTTCTTGCCCCTCC 57.415 47.619 0.00 0.00 0.00 4.30
2044 3418 5.532779 CCTAAAGTCATATTTCTTGCCCCTC 59.467 44.000 0.00 0.00 0.00 4.30
2045 3419 5.449553 CCTAAAGTCATATTTCTTGCCCCT 58.550 41.667 0.00 0.00 0.00 4.79
2046 3420 4.038042 GCCTAAAGTCATATTTCTTGCCCC 59.962 45.833 0.00 0.00 0.00 5.80
2047 3421 4.889995 AGCCTAAAGTCATATTTCTTGCCC 59.110 41.667 0.00 0.00 0.00 5.36
2048 3422 5.590259 TCAGCCTAAAGTCATATTTCTTGCC 59.410 40.000 0.00 0.00 0.00 4.52
2049 3423 6.683974 TCAGCCTAAAGTCATATTTCTTGC 57.316 37.500 0.00 0.00 0.00 4.01
2056 3430 9.125026 CCAGTTAAAATCAGCCTAAAGTCATAT 57.875 33.333 0.00 0.00 0.00 1.78
2057 3431 7.067008 GCCAGTTAAAATCAGCCTAAAGTCATA 59.933 37.037 0.00 0.00 0.00 2.15
2058 3432 6.127619 GCCAGTTAAAATCAGCCTAAAGTCAT 60.128 38.462 0.00 0.00 0.00 3.06
2059 3433 5.183140 GCCAGTTAAAATCAGCCTAAAGTCA 59.817 40.000 0.00 0.00 0.00 3.41
2060 3434 5.183140 TGCCAGTTAAAATCAGCCTAAAGTC 59.817 40.000 0.00 0.00 0.00 3.01
2061 3435 5.076873 TGCCAGTTAAAATCAGCCTAAAGT 58.923 37.500 0.00 0.00 0.00 2.66
2062 3436 5.643379 TGCCAGTTAAAATCAGCCTAAAG 57.357 39.130 0.00 0.00 0.00 1.85
2063 3437 7.201902 CCATATGCCAGTTAAAATCAGCCTAAA 60.202 37.037 0.00 0.00 0.00 1.85
2064 3438 6.265196 CCATATGCCAGTTAAAATCAGCCTAA 59.735 38.462 0.00 0.00 0.00 2.69
2065 3439 5.769662 CCATATGCCAGTTAAAATCAGCCTA 59.230 40.000 0.00 0.00 0.00 3.93
2066 3440 4.586001 CCATATGCCAGTTAAAATCAGCCT 59.414 41.667 0.00 0.00 0.00 4.58
2067 3441 4.262164 CCCATATGCCAGTTAAAATCAGCC 60.262 45.833 0.00 0.00 0.00 4.85
2068 3442 4.797275 GCCCATATGCCAGTTAAAATCAGC 60.797 45.833 0.00 0.00 0.00 4.26
2069 3443 4.586001 AGCCCATATGCCAGTTAAAATCAG 59.414 41.667 0.00 0.00 0.00 2.90
2070 3444 4.341806 CAGCCCATATGCCAGTTAAAATCA 59.658 41.667 0.00 0.00 0.00 2.57
2071 3445 4.584325 TCAGCCCATATGCCAGTTAAAATC 59.416 41.667 0.00 0.00 0.00 2.17
2072 3446 4.545678 TCAGCCCATATGCCAGTTAAAAT 58.454 39.130 0.00 0.00 0.00 1.82
2073 3447 3.974719 TCAGCCCATATGCCAGTTAAAA 58.025 40.909 0.00 0.00 0.00 1.52
2074 3448 3.660970 TCAGCCCATATGCCAGTTAAA 57.339 42.857 0.00 0.00 0.00 1.52
2075 3449 3.660970 TTCAGCCCATATGCCAGTTAA 57.339 42.857 0.00 0.00 0.00 2.01
2076 3450 3.882102 ATTCAGCCCATATGCCAGTTA 57.118 42.857 0.00 0.00 0.00 2.24
2077 3451 2.761786 ATTCAGCCCATATGCCAGTT 57.238 45.000 0.00 0.00 0.00 3.16
2078 3452 2.713167 AGTATTCAGCCCATATGCCAGT 59.287 45.455 0.00 0.00 0.00 4.00
2079 3453 3.430042 AGTATTCAGCCCATATGCCAG 57.570 47.619 0.00 0.00 0.00 4.85
2080 3454 3.264193 CCTAGTATTCAGCCCATATGCCA 59.736 47.826 0.00 0.00 0.00 4.92
2081 3455 3.370953 CCCTAGTATTCAGCCCATATGCC 60.371 52.174 0.00 0.00 0.00 4.40
2082 3456 3.370953 CCCCTAGTATTCAGCCCATATGC 60.371 52.174 0.00 0.00 0.00 3.14
2083 3457 4.104086 TCCCCTAGTATTCAGCCCATATG 58.896 47.826 0.00 0.00 0.00 1.78
2084 3458 4.435977 TCCCCTAGTATTCAGCCCATAT 57.564 45.455 0.00 0.00 0.00 1.78
2085 3459 3.935240 TCCCCTAGTATTCAGCCCATA 57.065 47.619 0.00 0.00 0.00 2.74
2086 3460 2.815357 TCCCCTAGTATTCAGCCCAT 57.185 50.000 0.00 0.00 0.00 4.00
2087 3461 2.815357 ATCCCCTAGTATTCAGCCCA 57.185 50.000 0.00 0.00 0.00 5.36
2088 3462 5.221742 GCATATATCCCCTAGTATTCAGCCC 60.222 48.000 0.00 0.00 0.00 5.19
2089 3463 5.604650 AGCATATATCCCCTAGTATTCAGCC 59.395 44.000 0.00 0.00 0.00 4.85
2090 3464 6.739331 AGCATATATCCCCTAGTATTCAGC 57.261 41.667 0.00 0.00 0.00 4.26
2091 3465 9.427821 AACTAGCATATATCCCCTAGTATTCAG 57.572 37.037 13.54 0.00 39.49 3.02
2092 3466 9.784376 AAACTAGCATATATCCCCTAGTATTCA 57.216 33.333 13.54 0.00 39.49 2.57
2096 3470 9.476928 GAGAAAACTAGCATATATCCCCTAGTA 57.523 37.037 13.54 0.00 39.49 1.82
2097 3471 7.956315 TGAGAAAACTAGCATATATCCCCTAGT 59.044 37.037 9.73 9.73 41.49 2.57
2098 3472 8.367660 TGAGAAAACTAGCATATATCCCCTAG 57.632 38.462 8.83 8.83 34.80 3.02
2099 3473 8.762645 CATGAGAAAACTAGCATATATCCCCTA 58.237 37.037 0.00 0.00 0.00 3.53
2100 3474 7.311549 CCATGAGAAAACTAGCATATATCCCCT 60.312 40.741 0.00 0.00 0.00 4.79
2101 3475 6.825721 CCATGAGAAAACTAGCATATATCCCC 59.174 42.308 0.00 0.00 0.00 4.81
2102 3476 6.825721 CCCATGAGAAAACTAGCATATATCCC 59.174 42.308 0.00 0.00 0.00 3.85
2103 3477 6.317391 GCCCATGAGAAAACTAGCATATATCC 59.683 42.308 0.00 0.00 0.00 2.59
2104 3478 7.065563 CAGCCCATGAGAAAACTAGCATATATC 59.934 40.741 0.00 0.00 0.00 1.63
2105 3479 6.883217 CAGCCCATGAGAAAACTAGCATATAT 59.117 38.462 0.00 0.00 0.00 0.86
2106 3480 6.233434 CAGCCCATGAGAAAACTAGCATATA 58.767 40.000 0.00 0.00 0.00 0.86
2107 3481 5.068636 CAGCCCATGAGAAAACTAGCATAT 58.931 41.667 0.00 0.00 0.00 1.78
2108 3482 4.454678 CAGCCCATGAGAAAACTAGCATA 58.545 43.478 0.00 0.00 0.00 3.14
2109 3483 3.285484 CAGCCCATGAGAAAACTAGCAT 58.715 45.455 0.00 0.00 0.00 3.79
2110 3484 2.618816 CCAGCCCATGAGAAAACTAGCA 60.619 50.000 0.00 0.00 0.00 3.49
2111 3485 2.019984 CCAGCCCATGAGAAAACTAGC 58.980 52.381 0.00 0.00 0.00 3.42
2112 3486 2.648059 CCCAGCCCATGAGAAAACTAG 58.352 52.381 0.00 0.00 0.00 2.57
2113 3487 1.284785 CCCCAGCCCATGAGAAAACTA 59.715 52.381 0.00 0.00 0.00 2.24
2114 3488 0.040204 CCCCAGCCCATGAGAAAACT 59.960 55.000 0.00 0.00 0.00 2.66
2115 3489 0.972471 CCCCCAGCCCATGAGAAAAC 60.972 60.000 0.00 0.00 0.00 2.43
2116 3490 1.387737 CCCCCAGCCCATGAGAAAA 59.612 57.895 0.00 0.00 0.00 2.29
2117 3491 3.099171 CCCCCAGCCCATGAGAAA 58.901 61.111 0.00 0.00 0.00 2.52
2137 3511 1.304713 AGAGCAACCTGGGCCATTG 60.305 57.895 6.72 11.47 0.00 2.82
2138 3512 1.000396 GAGAGCAACCTGGGCCATT 60.000 57.895 6.72 0.00 0.00 3.16
2139 3513 2.679716 GAGAGCAACCTGGGCCAT 59.320 61.111 6.72 0.00 0.00 4.40
2140 3514 3.650950 GGAGAGCAACCTGGGCCA 61.651 66.667 5.85 5.85 0.00 5.36
2141 3515 3.650950 TGGAGAGCAACCTGGGCC 61.651 66.667 0.00 0.00 0.00 5.80
2142 3516 1.553690 TAGTGGAGAGCAACCTGGGC 61.554 60.000 0.00 0.00 0.00 5.36
2143 3517 0.984230 TTAGTGGAGAGCAACCTGGG 59.016 55.000 0.00 0.00 0.00 4.45
2144 3518 1.625818 ACTTAGTGGAGAGCAACCTGG 59.374 52.381 0.00 0.00 0.00 4.45
2145 3519 3.330267 GAACTTAGTGGAGAGCAACCTG 58.670 50.000 0.00 0.00 0.00 4.00
2146 3520 2.303311 GGAACTTAGTGGAGAGCAACCT 59.697 50.000 0.00 0.00 0.00 3.50
2147 3521 2.701107 GGAACTTAGTGGAGAGCAACC 58.299 52.381 0.00 0.00 0.00 3.77
2148 3522 2.338500 CGGAACTTAGTGGAGAGCAAC 58.662 52.381 0.00 0.00 0.00 4.17
2149 3523 1.337823 GCGGAACTTAGTGGAGAGCAA 60.338 52.381 0.00 0.00 0.00 3.91
2150 3524 0.246635 GCGGAACTTAGTGGAGAGCA 59.753 55.000 0.00 0.00 0.00 4.26
2151 3525 0.460459 GGCGGAACTTAGTGGAGAGC 60.460 60.000 0.00 0.00 0.00 4.09
2152 3526 0.895530 TGGCGGAACTTAGTGGAGAG 59.104 55.000 0.00 0.00 0.00 3.20
2153 3527 0.606604 GTGGCGGAACTTAGTGGAGA 59.393 55.000 0.00 0.00 0.00 3.71
2154 3528 0.608640 AGTGGCGGAACTTAGTGGAG 59.391 55.000 0.00 0.00 0.00 3.86
2155 3529 0.320374 CAGTGGCGGAACTTAGTGGA 59.680 55.000 0.00 0.00 0.00 4.02
2156 3530 1.298859 GCAGTGGCGGAACTTAGTGG 61.299 60.000 0.00 0.00 0.00 4.00
2157 3531 2.162716 GCAGTGGCGGAACTTAGTG 58.837 57.895 0.00 0.00 0.00 2.74
2158 3532 4.695560 GCAGTGGCGGAACTTAGT 57.304 55.556 0.00 0.00 0.00 2.24
2167 3541 8.779919 GCAAGTTATTGTTACTAGCAGTGGCG 62.780 46.154 0.00 0.00 41.07 5.69
2168 3542 5.673818 GCAAGTTATTGTTACTAGCAGTGGC 60.674 44.000 0.00 0.00 38.76 5.01
2169 3543 5.411361 TGCAAGTTATTGTTACTAGCAGTGG 59.589 40.000 0.00 0.00 38.76 4.00
2170 3544 6.480524 TGCAAGTTATTGTTACTAGCAGTG 57.519 37.500 0.00 0.00 38.76 3.66
2171 3545 5.122396 GCTGCAAGTTATTGTTACTAGCAGT 59.878 40.000 11.54 0.00 46.20 4.40
2172 3546 5.447818 GGCTGCAAGTTATTGTTACTAGCAG 60.448 44.000 0.50 0.00 46.95 4.24
2173 3547 4.394920 GGCTGCAAGTTATTGTTACTAGCA 59.605 41.667 0.50 0.00 38.76 3.49
2174 3548 4.394920 TGGCTGCAAGTTATTGTTACTAGC 59.605 41.667 0.50 0.00 38.76 3.42
2239 3613 3.009143 GGTTACCCCTTGAGTGAACATCT 59.991 47.826 0.00 0.00 0.00 2.90
2259 3634 1.384191 GCAACATCTCCCCTTGGGT 59.616 57.895 4.84 0.00 44.74 4.51
2268 3643 4.702131 AGGTACCTGAAATTGCAACATCTC 59.298 41.667 15.42 0.00 0.00 2.75
2269 3644 4.666512 AGGTACCTGAAATTGCAACATCT 58.333 39.130 15.42 0.00 0.00 2.90
2270 3645 5.391312 AAGGTACCTGAAATTGCAACATC 57.609 39.130 17.14 3.58 0.00 3.06
2271 3646 6.663093 TCATAAGGTACCTGAAATTGCAACAT 59.337 34.615 17.14 0.00 0.00 2.71
2272 3647 6.007076 TCATAAGGTACCTGAAATTGCAACA 58.993 36.000 17.14 0.00 0.00 3.33
2273 3648 6.404734 CCTCATAAGGTACCTGAAATTGCAAC 60.405 42.308 17.14 0.00 37.94 4.17
2274 3649 5.652014 CCTCATAAGGTACCTGAAATTGCAA 59.348 40.000 17.14 0.00 37.94 4.08
2275 3650 5.192927 CCTCATAAGGTACCTGAAATTGCA 58.807 41.667 17.14 0.00 37.94 4.08
2276 3651 5.757850 CCTCATAAGGTACCTGAAATTGC 57.242 43.478 17.14 0.00 37.94 3.56
2294 3669 9.421806 CATTTGTTAATTTATTTGAGCACCTCA 57.578 29.630 0.00 0.00 38.87 3.86
2295 3670 9.423061 ACATTTGTTAATTTATTTGAGCACCTC 57.577 29.630 0.00 0.00 0.00 3.85
2308 3683 9.638239 AATCGCAACATCTACATTTGTTAATTT 57.362 25.926 0.00 0.00 34.42 1.82
2309 3684 9.638239 AAATCGCAACATCTACATTTGTTAATT 57.362 25.926 0.00 0.00 34.42 1.40
2310 3685 9.289303 GAAATCGCAACATCTACATTTGTTAAT 57.711 29.630 0.00 0.00 34.42 1.40
2311 3686 8.293157 TGAAATCGCAACATCTACATTTGTTAA 58.707 29.630 0.00 0.00 34.42 2.01
2312 3687 7.811653 TGAAATCGCAACATCTACATTTGTTA 58.188 30.769 0.00 0.00 34.42 2.41
2313 3688 6.676950 TGAAATCGCAACATCTACATTTGTT 58.323 32.000 0.00 0.00 36.53 2.83
2314 3689 6.252967 TGAAATCGCAACATCTACATTTGT 57.747 33.333 0.00 0.00 0.00 2.83
2315 3690 5.740569 CCTGAAATCGCAACATCTACATTTG 59.259 40.000 0.00 0.00 0.00 2.32
2316 3691 5.415701 ACCTGAAATCGCAACATCTACATTT 59.584 36.000 0.00 0.00 0.00 2.32
2317 3692 4.943705 ACCTGAAATCGCAACATCTACATT 59.056 37.500 0.00 0.00 0.00 2.71
2318 3693 4.517285 ACCTGAAATCGCAACATCTACAT 58.483 39.130 0.00 0.00 0.00 2.29
2319 3694 3.937814 ACCTGAAATCGCAACATCTACA 58.062 40.909 0.00 0.00 0.00 2.74
2320 3695 4.270325 GGTACCTGAAATCGCAACATCTAC 59.730 45.833 4.06 0.00 0.00 2.59
2321 3696 4.161565 AGGTACCTGAAATCGCAACATCTA 59.838 41.667 15.42 0.00 0.00 1.98
2385 3761 4.354662 GAACCTCCCTCTCTTCTTCCTTA 58.645 47.826 0.00 0.00 0.00 2.69
2546 3925 2.295349 CTCACATGCTTTCAAGGCTTGT 59.705 45.455 25.39 7.16 44.82 3.16
2610 3989 3.429822 GCTTATGTACCTGTACGAAGGCA 60.430 47.826 16.97 0.00 41.46 4.75
2720 4308 2.949447 AGGTTCAGTTTCATGCCAACT 58.051 42.857 4.69 4.69 34.67 3.16
2729 4317 8.296713 TGAAAGCAAATATGTAGGTTCAGTTTC 58.703 33.333 0.00 0.00 0.00 2.78
2741 4329 7.450634 AGCCTGATGATATGAAAGCAAATATGT 59.549 33.333 0.00 0.00 0.00 2.29
2742 4330 7.755373 CAGCCTGATGATATGAAAGCAAATATG 59.245 37.037 0.00 0.00 0.00 1.78
2815 4403 1.400242 GCTGAGAAATGGACACGTTGC 60.400 52.381 0.00 0.00 0.00 4.17
2824 4412 3.349927 TCCATCAACAGCTGAGAAATGG 58.650 45.455 23.35 23.66 37.52 3.16
2825 4413 4.259356 TCTCCATCAACAGCTGAGAAATG 58.741 43.478 23.35 16.55 37.52 2.32
2827 4415 4.356405 TTCTCCATCAACAGCTGAGAAA 57.644 40.909 23.35 5.88 38.68 2.52
2880 4468 0.797249 GATCGTCCACGTCTCGGTTG 60.797 60.000 0.00 0.00 40.80 3.77
2881 4469 1.239296 TGATCGTCCACGTCTCGGTT 61.239 55.000 0.00 0.00 40.80 4.44
3011 4599 5.811613 GCAGCAATAATACTTTGATTGGCAA 59.188 36.000 0.68 0.68 32.33 4.52
3012 4600 5.105432 TGCAGCAATAATACTTTGATTGGCA 60.105 36.000 0.00 0.00 32.33 4.92
3013 4601 5.232838 GTGCAGCAATAATACTTTGATTGGC 59.767 40.000 0.00 0.00 32.33 4.52
3014 4602 6.331845 TGTGCAGCAATAATACTTTGATTGG 58.668 36.000 0.00 0.00 32.33 3.16
3015 4603 6.474427 CCTGTGCAGCAATAATACTTTGATTG 59.526 38.462 0.00 0.00 34.37 2.67
3139 4727 6.884472 TCCCTGTGGAAATTAATAGTGAGA 57.116 37.500 0.00 0.00 37.86 3.27
3247 4835 6.183360 TGGATGTCAGAACTCAGTACTTTTGA 60.183 38.462 0.00 0.00 0.00 2.69
3274 4862 3.337358 TGTGCAACCATCATAGTGACTG 58.663 45.455 0.00 0.00 34.36 3.51
3451 5039 0.172578 CATGTGCTGCTTGTGATGGG 59.827 55.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.