Multiple sequence alignment - TraesCS1A01G252400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G252400 chr1A 100.000 4674 0 0 1 4674 444123585 444128258 0.000000e+00 8632.0
1 TraesCS1A01G252400 chr1A 98.198 111 2 0 16 126 154418141 154418031 1.330000e-45 195.0
2 TraesCS1A01G252400 chr1A 97.345 113 3 0 17 129 11269024 11269136 4.770000e-45 193.0
3 TraesCS1A01G252400 chr1A 85.294 68 10 0 1862 1929 521899864 521899931 2.330000e-08 71.3
4 TraesCS1A01G252400 chr1D 94.924 1576 60 8 3103 4674 344595301 344596860 0.000000e+00 2449.0
5 TraesCS1A01G252400 chr1D 90.975 1097 68 17 2002 3080 344594231 344595314 0.000000e+00 1448.0
6 TraesCS1A01G252400 chr1D 86.394 904 58 33 630 1494 344592521 344593398 0.000000e+00 928.0
7 TraesCS1A01G252400 chr1D 91.697 542 24 6 1477 2004 344593583 344594117 0.000000e+00 732.0
8 TraesCS1A01G252400 chr1D 85.470 234 17 1 125 341 344591839 344592072 1.310000e-55 228.0
9 TraesCS1A01G252400 chr1D 95.000 120 6 0 7 126 349423044 349422925 6.170000e-44 189.0
10 TraesCS1A01G252400 chr1B 95.024 1266 48 9 3103 4358 466090070 466088810 0.000000e+00 1975.0
11 TraesCS1A01G252400 chr1B 86.314 1096 63 35 633 1677 466092347 466091288 0.000000e+00 1112.0
12 TraesCS1A01G252400 chr1B 92.256 749 32 10 2353 3090 466090779 466090046 0.000000e+00 1038.0
13 TraesCS1A01G252400 chr1B 90.639 438 20 9 1932 2356 466091286 466090857 3.160000e-156 562.0
14 TraesCS1A01G252400 chr1B 94.637 317 13 3 4361 4674 466088598 466088283 5.440000e-134 488.0
15 TraesCS1A01G252400 chr1B 85.043 234 18 1 125 341 466093053 466092820 6.090000e-54 222.0
16 TraesCS1A01G252400 chr1B 88.991 109 8 3 128 236 682438479 682438583 1.060000e-26 132.0
17 TraesCS1A01G252400 chr2A 82.686 283 29 11 633 912 476212809 476212544 2.810000e-57 233.0
18 TraesCS1A01G252400 chr2A 84.416 231 19 1 128 341 476213662 476213432 1.320000e-50 211.0
19 TraesCS1A01G252400 chr2A 95.522 67 1 2 913 979 476212504 476212440 6.400000e-19 106.0
20 TraesCS1A01G252400 chr3A 97.500 120 2 1 15 133 647142248 647142367 2.200000e-48 204.0
21 TraesCS1A01G252400 chr3A 79.365 189 26 12 1730 1913 14035757 14035577 2.280000e-23 121.0
22 TraesCS1A01G252400 chr7A 95.798 119 3 2 13 130 150054013 150054130 1.720000e-44 191.0
23 TraesCS1A01G252400 chr6B 95.763 118 3 2 20 135 503547871 503547754 6.170000e-44 189.0
24 TraesCS1A01G252400 chr6B 82.162 185 29 4 1707 1890 200784297 200784478 6.260000e-34 156.0
25 TraesCS1A01G252400 chr6B 82.313 147 22 4 1724 1869 676536029 676536172 1.770000e-24 124.0
26 TraesCS1A01G252400 chr6B 95.745 47 2 0 243 289 574164517 574164471 5.020000e-10 76.8
27 TraesCS1A01G252400 chr6B 84.058 69 9 2 1862 1929 636486061 636486128 1.090000e-06 65.8
28 TraesCS1A01G252400 chr5A 97.297 111 2 1 16 126 177604825 177604934 2.220000e-43 187.0
29 TraesCS1A01G252400 chr5A 79.147 211 36 8 1708 1915 444898130 444897925 6.310000e-29 139.0
30 TraesCS1A01G252400 chr5A 78.673 211 36 9 1708 1915 32127361 32127157 1.060000e-26 132.0
31 TraesCS1A01G252400 chr7D 93.548 124 6 2 13 135 421569749 421569627 2.870000e-42 183.0
32 TraesCS1A01G252400 chr3D 93.548 124 6 2 11 133 404979785 404979663 2.870000e-42 183.0
33 TraesCS1A01G252400 chr7B 81.707 164 27 3 1720 1882 444715395 444715556 2.930000e-27 134.0
34 TraesCS1A01G252400 chr3B 82.317 164 19 9 1730 1889 361769268 361769425 2.930000e-27 134.0
35 TraesCS1A01G252400 chr2B 78.736 174 33 4 1708 1880 11308999 11309169 3.820000e-21 113.0
36 TraesCS1A01G252400 chr4B 82.895 76 10 3 1862 1935 210472460 210472386 1.090000e-06 65.8
37 TraesCS1A01G252400 chr6D 81.818 77 10 4 1862 1935 268095039 268095114 1.400000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G252400 chr1A 444123585 444128258 4673 False 8632.0 8632 100.000000 1 4674 1 chr1A.!!$F2 4673
1 TraesCS1A01G252400 chr1D 344591839 344596860 5021 False 1157.0 2449 89.892000 125 4674 5 chr1D.!!$F1 4549
2 TraesCS1A01G252400 chr1B 466088283 466093053 4770 True 899.5 1975 90.652167 125 4674 6 chr1B.!!$R1 4549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 1139 0.035739 TGGCCCGTTCTACAGAAACC 59.964 55.000 0.0 0.00 35.58 3.27 F
1930 2427 0.040204 ATGAACCAAAGGAGGCCTGG 59.960 55.000 12.0 8.56 32.13 4.45 F
2536 3256 1.001378 AGAACCGCTTGCACAAATGAC 60.001 47.619 0.0 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2585 3305 1.702401 TGGGTAGCATTTGTGTCCTGA 59.298 47.619 0.00 0.00 0.00 3.86 R
3562 4296 0.966875 TGAACACATGCCCCAGATGC 60.967 55.000 0.00 0.00 0.00 3.91 R
4189 4923 0.027586 AGACAAAAGCGCAACGTGTC 59.972 50.000 19.61 19.61 39.09 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.303021 CTTCCCAGTTCGTAGTATCTACTC 57.697 45.833 5.58 0.00 37.73 2.59
24 25 4.712476 TCCCAGTTCGTAGTATCTACTCC 58.288 47.826 5.58 0.00 37.73 3.85
25 26 3.819902 CCCAGTTCGTAGTATCTACTCCC 59.180 52.174 5.58 0.00 37.73 4.30
26 27 4.446023 CCCAGTTCGTAGTATCTACTCCCT 60.446 50.000 5.58 0.00 37.73 4.20
27 28 4.756135 CCAGTTCGTAGTATCTACTCCCTC 59.244 50.000 5.58 0.00 37.73 4.30
28 29 4.756135 CAGTTCGTAGTATCTACTCCCTCC 59.244 50.000 5.58 0.00 37.73 4.30
29 30 4.411540 AGTTCGTAGTATCTACTCCCTCCA 59.588 45.833 5.58 0.00 37.73 3.86
30 31 5.073417 AGTTCGTAGTATCTACTCCCTCCAT 59.927 44.000 5.58 0.00 37.73 3.41
31 32 5.579753 TCGTAGTATCTACTCCCTCCATT 57.420 43.478 5.58 0.00 37.73 3.16
32 33 5.558818 TCGTAGTATCTACTCCCTCCATTC 58.441 45.833 5.58 0.00 37.73 2.67
33 34 4.392445 CGTAGTATCTACTCCCTCCATTCG 59.608 50.000 5.58 0.00 37.73 3.34
34 35 3.768878 AGTATCTACTCCCTCCATTCGG 58.231 50.000 0.00 0.00 0.00 4.30
35 36 3.398292 AGTATCTACTCCCTCCATTCGGA 59.602 47.826 0.00 0.00 39.79 4.55
36 37 2.840640 TCTACTCCCTCCATTCGGAA 57.159 50.000 0.00 0.00 42.21 4.30
37 38 3.330126 TCTACTCCCTCCATTCGGAAT 57.670 47.619 0.00 0.00 42.21 3.01
38 39 3.654273 TCTACTCCCTCCATTCGGAATT 58.346 45.455 0.00 0.00 42.21 2.17
39 40 4.811498 TCTACTCCCTCCATTCGGAATTA 58.189 43.478 0.00 0.00 42.21 1.40
40 41 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
41 42 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
42 43 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
43 44 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
44 45 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
45 46 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
46 47 4.384208 CCCTCCATTCGGAATTACTTGTCT 60.384 45.833 0.00 0.00 42.21 3.41
47 48 4.811557 CCTCCATTCGGAATTACTTGTCTC 59.188 45.833 0.00 0.00 42.21 3.36
48 49 4.430007 TCCATTCGGAATTACTTGTCTCG 58.570 43.478 0.00 0.00 38.83 4.04
49 50 3.555956 CCATTCGGAATTACTTGTCTCGG 59.444 47.826 0.00 0.00 0.00 4.63
50 51 4.430007 CATTCGGAATTACTTGTCTCGGA 58.570 43.478 0.00 0.00 0.00 4.55
51 52 4.730949 TTCGGAATTACTTGTCTCGGAT 57.269 40.909 0.00 0.00 0.00 4.18
52 53 5.840243 TTCGGAATTACTTGTCTCGGATA 57.160 39.130 0.00 0.00 0.00 2.59
53 54 6.401047 TTCGGAATTACTTGTCTCGGATAT 57.599 37.500 0.00 0.00 0.00 1.63
54 55 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
55 56 4.923871 CGGAATTACTTGTCTCGGATATGG 59.076 45.833 0.00 0.00 0.00 2.74
56 57 5.278808 CGGAATTACTTGTCTCGGATATGGA 60.279 44.000 0.00 0.00 0.00 3.41
57 58 6.572509 CGGAATTACTTGTCTCGGATATGGAT 60.573 42.308 0.00 0.00 0.00 3.41
58 59 6.591834 GGAATTACTTGTCTCGGATATGGATG 59.408 42.308 0.00 0.00 0.00 3.51
59 60 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
60 61 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
61 62 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
62 63 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
63 64 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
64 65 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
65 66 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
66 67 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
67 68 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
68 69 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
69 70 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
70 71 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
71 72 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
72 73 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
99 100 6.604012 ACGTCTAGATACATCTATTTCTGCG 58.396 40.000 0.00 0.00 38.60 5.18
100 101 6.427242 ACGTCTAGATACATCTATTTCTGCGA 59.573 38.462 0.00 0.00 38.60 5.10
101 102 6.739100 CGTCTAGATACATCTATTTCTGCGAC 59.261 42.308 0.00 2.21 38.60 5.19
102 103 7.571428 CGTCTAGATACATCTATTTCTGCGACA 60.571 40.741 0.00 0.00 38.60 4.35
103 104 8.076781 GTCTAGATACATCTATTTCTGCGACAA 58.923 37.037 0.00 0.00 38.60 3.18
104 105 8.293157 TCTAGATACATCTATTTCTGCGACAAG 58.707 37.037 0.00 0.00 38.60 3.16
105 106 6.810911 AGATACATCTATTTCTGCGACAAGT 58.189 36.000 0.00 0.00 34.85 3.16
106 107 7.941919 AGATACATCTATTTCTGCGACAAGTA 58.058 34.615 0.00 0.00 34.85 2.24
107 108 8.414003 AGATACATCTATTTCTGCGACAAGTAA 58.586 33.333 0.00 0.00 34.85 2.24
108 109 9.197694 GATACATCTATTTCTGCGACAAGTAAT 57.802 33.333 0.00 0.00 0.00 1.89
109 110 7.849804 ACATCTATTTCTGCGACAAGTAATT 57.150 32.000 0.00 0.00 0.00 1.40
110 111 7.910304 ACATCTATTTCTGCGACAAGTAATTC 58.090 34.615 0.00 0.00 0.00 2.17
111 112 6.903883 TCTATTTCTGCGACAAGTAATTCC 57.096 37.500 0.00 0.00 0.00 3.01
112 113 4.600012 ATTTCTGCGACAAGTAATTCCG 57.400 40.909 0.00 0.00 0.00 4.30
113 114 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
114 115 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
115 116 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
116 117 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
117 118 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
118 119 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
119 120 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
120 121 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
121 122 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
122 123 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
123 124 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
133 134 3.243002 CGAACGGAGGGAGTAGTATCAAC 60.243 52.174 0.00 0.00 0.00 3.18
158 159 6.205784 TGTTAGCTGACAAACTTGCATTTAC 58.794 36.000 9.18 0.00 0.00 2.01
163 164 4.843147 TGACAAACTTGCATTTACGTCTG 58.157 39.130 0.00 0.00 0.00 3.51
164 165 4.334203 TGACAAACTTGCATTTACGTCTGT 59.666 37.500 0.00 0.00 0.00 3.41
192 193 5.861727 TGATGCTCTGTTGTATATGATGCT 58.138 37.500 0.00 0.00 0.00 3.79
196 197 5.985530 TGCTCTGTTGTATATGATGCTGTAC 59.014 40.000 0.00 0.00 0.00 2.90
208 209 6.914654 ATGATGCTGTACTGATCACTAGAT 57.085 37.500 3.61 0.00 37.13 1.98
256 274 9.515226 TTGATAAACCAAATTGTAGCTTAGAGT 57.485 29.630 0.00 0.00 0.00 3.24
259 277 6.819397 AACCAAATTGTAGCTTAGAGTTCC 57.181 37.500 0.00 0.00 0.00 3.62
260 278 5.876357 ACCAAATTGTAGCTTAGAGTTCCA 58.124 37.500 0.00 0.00 0.00 3.53
296 314 9.190858 GATATTTCACACATTGCTTGTTTAACA 57.809 29.630 0.00 0.00 36.00 2.41
302 320 4.984161 CACATTGCTTGTTTAACAGGGAAG 59.016 41.667 17.43 12.38 38.72 3.46
308 326 4.798574 CTTGTTTAACAGGGAAGTGATGC 58.201 43.478 0.00 0.00 0.00 3.91
329 347 2.947652 CAGCATCCATCCTTGTTACTGG 59.052 50.000 0.00 0.00 0.00 4.00
359 404 2.411069 GCAGCTATCTCATGTGTATGCG 59.589 50.000 0.00 0.00 34.21 4.73
365 410 5.514559 GCTATCTCATGTGTATGCGTAGATG 59.485 44.000 0.00 0.00 31.56 2.90
368 413 6.002062 TCTCATGTGTATGCGTAGATGTAG 57.998 41.667 0.00 0.00 34.21 2.74
369 414 5.763204 TCTCATGTGTATGCGTAGATGTAGA 59.237 40.000 0.00 0.00 34.21 2.59
372 497 6.918022 TCATGTGTATGCGTAGATGTAGAAAG 59.082 38.462 0.00 0.00 34.21 2.62
384 509 4.694509 AGATGTAGAAAGCTGAGCAAACAG 59.305 41.667 7.39 0.00 40.43 3.16
395 520 4.207841 GCTGAGCAAACAGTGAACAAATTC 59.792 41.667 0.00 0.00 39.73 2.17
404 529 5.997385 ACAGTGAACAAATTCCGATGTTAC 58.003 37.500 0.00 0.00 39.73 2.50
407 532 6.578545 CAGTGAACAAATTCCGATGTTACAAG 59.421 38.462 0.00 0.00 39.73 3.16
408 533 5.342259 GTGAACAAATTCCGATGTTACAAGC 59.658 40.000 0.00 0.00 39.73 4.01
410 535 3.192633 ACAAATTCCGATGTTACAAGCCC 59.807 43.478 0.00 0.00 0.00 5.19
411 536 2.799126 ATTCCGATGTTACAAGCCCA 57.201 45.000 0.00 0.00 0.00 5.36
412 537 2.107950 TTCCGATGTTACAAGCCCAG 57.892 50.000 0.00 0.00 0.00 4.45
413 538 0.981183 TCCGATGTTACAAGCCCAGT 59.019 50.000 0.00 0.00 0.00 4.00
414 539 1.349688 TCCGATGTTACAAGCCCAGTT 59.650 47.619 0.00 0.00 0.00 3.16
416 541 2.556622 CCGATGTTACAAGCCCAGTTTT 59.443 45.455 0.00 0.00 0.00 2.43
417 542 3.005367 CCGATGTTACAAGCCCAGTTTTT 59.995 43.478 0.00 0.00 0.00 1.94
436 561 5.428496 TTTTTCAGACAGAAGTGCATCAG 57.572 39.130 0.00 0.00 37.57 2.90
437 562 4.341366 TTTCAGACAGAAGTGCATCAGA 57.659 40.909 0.00 0.00 37.57 3.27
438 563 4.548451 TTCAGACAGAAGTGCATCAGAT 57.452 40.909 0.00 0.00 0.00 2.90
440 565 5.866159 TCAGACAGAAGTGCATCAGATAT 57.134 39.130 0.00 0.00 0.00 1.63
441 566 5.598769 TCAGACAGAAGTGCATCAGATATG 58.401 41.667 0.00 0.00 0.00 1.78
442 567 5.361857 TCAGACAGAAGTGCATCAGATATGA 59.638 40.000 0.00 0.00 0.00 2.15
458 583 6.499699 TCAGATATGATCCTCTTAATGCCACT 59.500 38.462 0.00 0.00 0.00 4.00
463 588 5.324409 TGATCCTCTTAATGCCACTTGTTT 58.676 37.500 0.00 0.00 0.00 2.83
464 589 5.774690 TGATCCTCTTAATGCCACTTGTTTT 59.225 36.000 0.00 0.00 0.00 2.43
466 591 5.841810 TCCTCTTAATGCCACTTGTTTTTG 58.158 37.500 0.00 0.00 0.00 2.44
470 595 5.362430 TCTTAATGCCACTTGTTTTTGGTCT 59.638 36.000 0.00 0.00 35.09 3.85
471 596 2.957491 TGCCACTTGTTTTTGGTCTG 57.043 45.000 0.00 0.00 35.09 3.51
472 597 1.134848 TGCCACTTGTTTTTGGTCTGC 60.135 47.619 0.00 0.00 35.09 4.26
473 598 1.806247 GCCACTTGTTTTTGGTCTGCC 60.806 52.381 0.00 0.00 35.09 4.85
474 599 1.480137 CCACTTGTTTTTGGTCTGCCA 59.520 47.619 0.00 0.00 44.38 4.92
488 613 5.005740 TGGTCTGCCAATCTATATTCATGC 58.994 41.667 0.00 0.00 42.83 4.06
489 614 5.005740 GGTCTGCCAATCTATATTCATGCA 58.994 41.667 0.00 0.00 34.09 3.96
493 618 8.086522 GTCTGCCAATCTATATTCATGCATTTT 58.913 33.333 0.00 0.00 0.00 1.82
495 620 7.953752 TGCCAATCTATATTCATGCATTTTGA 58.046 30.769 0.00 0.00 0.00 2.69
496 621 8.590204 TGCCAATCTATATTCATGCATTTTGAT 58.410 29.630 0.00 0.00 0.00 2.57
497 622 8.869897 GCCAATCTATATTCATGCATTTTGATG 58.130 33.333 0.00 0.00 0.00 3.07
498 623 9.923143 CCAATCTATATTCATGCATTTTGATGT 57.077 29.630 0.00 0.00 0.00 3.06
505 705 6.778834 TTCATGCATTTTGATGTACTGGAT 57.221 33.333 0.00 0.00 0.00 3.41
513 713 6.961359 TTTTGATGTACTGGATTACGACTG 57.039 37.500 0.00 0.00 0.00 3.51
518 718 2.831685 ACTGGATTACGACTGTGCAA 57.168 45.000 0.00 0.00 0.00 4.08
522 722 1.670811 GGATTACGACTGTGCAATGGG 59.329 52.381 0.00 0.00 0.00 4.00
526 726 1.296392 CGACTGTGCAATGGGGAGA 59.704 57.895 0.00 0.00 0.00 3.71
527 727 0.107508 CGACTGTGCAATGGGGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
534 734 3.290710 GTGCAATGGGGAGATATGTTGT 58.709 45.455 0.00 0.00 0.00 3.32
537 737 3.316308 GCAATGGGGAGATATGTTGTCAC 59.684 47.826 0.00 0.00 0.00 3.67
540 740 2.505407 TGGGGAGATATGTTGTCACCAG 59.495 50.000 0.00 0.00 0.00 4.00
557 758 5.003160 TCACCAGGATTTGACTATGTTGTG 58.997 41.667 0.00 0.00 0.00 3.33
558 759 4.761739 CACCAGGATTTGACTATGTTGTGT 59.238 41.667 0.00 0.00 0.00 3.72
559 760 4.761739 ACCAGGATTTGACTATGTTGTGTG 59.238 41.667 0.00 0.00 0.00 3.82
560 761 4.761739 CCAGGATTTGACTATGTTGTGTGT 59.238 41.667 0.00 0.00 0.00 3.72
561 762 5.335113 CCAGGATTTGACTATGTTGTGTGTG 60.335 44.000 0.00 0.00 0.00 3.82
562 763 4.761739 AGGATTTGACTATGTTGTGTGTGG 59.238 41.667 0.00 0.00 0.00 4.17
563 764 4.759693 GGATTTGACTATGTTGTGTGTGGA 59.240 41.667 0.00 0.00 0.00 4.02
565 766 5.940192 TTTGACTATGTTGTGTGTGGATC 57.060 39.130 0.00 0.00 0.00 3.36
566 767 3.584834 TGACTATGTTGTGTGTGGATCG 58.415 45.455 0.00 0.00 0.00 3.69
567 768 3.257127 TGACTATGTTGTGTGTGGATCGA 59.743 43.478 0.00 0.00 0.00 3.59
568 769 4.081697 TGACTATGTTGTGTGTGGATCGAT 60.082 41.667 0.00 0.00 0.00 3.59
570 771 5.592054 ACTATGTTGTGTGTGGATCGATAG 58.408 41.667 0.00 0.00 0.00 2.08
597 798 6.841443 TTTCAAATACAACATGTGGCTTTG 57.159 33.333 17.12 17.12 32.17 2.77
598 799 4.880759 TCAAATACAACATGTGGCTTTGG 58.119 39.130 20.53 6.46 31.99 3.28
602 803 5.743636 ATACAACATGTGGCTTTGGAAAT 57.256 34.783 0.00 0.00 0.00 2.17
606 807 2.971330 ACATGTGGCTTTGGAAATTCCA 59.029 40.909 11.23 11.23 46.61 3.53
627 828 8.871629 TTCCAAAGTTTATACTAGGATTTGCA 57.128 30.769 0.00 0.00 38.06 4.08
628 829 9.474313 TTCCAAAGTTTATACTAGGATTTGCAT 57.526 29.630 0.00 0.00 38.06 3.96
639 847 6.711277 ACTAGGATTTGCATAAGTTGTCTCA 58.289 36.000 0.00 0.00 0.00 3.27
640 848 7.168219 ACTAGGATTTGCATAAGTTGTCTCAA 58.832 34.615 0.00 0.00 0.00 3.02
650 858 6.458206 GCATAAGTTGTCTCAAGTTGAACACA 60.458 38.462 15.80 13.82 0.00 3.72
656 864 6.325919 TGTCTCAAGTTGAACACAAAAGTT 57.674 33.333 12.77 0.00 0.00 2.66
673 882 2.457323 TTGCGGACCCCCTTTCAGT 61.457 57.895 0.00 0.00 0.00 3.41
688 897 2.550277 TCAGTATGCCTGGAGAGGAA 57.450 50.000 0.00 0.00 41.80 3.36
691 900 3.055094 TCAGTATGCCTGGAGAGGAAAAC 60.055 47.826 0.00 0.00 41.80 2.43
692 901 2.912956 AGTATGCCTGGAGAGGAAAACA 59.087 45.455 0.00 0.00 42.93 2.83
697 906 1.421646 CCTGGAGAGGAAAACACCACT 59.578 52.381 0.00 0.00 42.93 4.00
706 915 3.458487 AGGAAAACACCACTACTCCAGTT 59.542 43.478 0.00 0.00 34.26 3.16
714 923 3.261897 ACCACTACTCCAGTTTCCAGATG 59.738 47.826 0.00 0.00 34.26 2.90
740 949 4.339814 GGATACTCCAGTCCAGAGTTACTG 59.660 50.000 0.00 0.00 41.87 2.74
751 960 1.896465 AGAGTTACTGGTCAGTCTGCC 59.104 52.381 6.91 0.65 42.54 4.85
772 987 1.288752 CGCCGCTTGGTTTGGAATT 59.711 52.632 0.00 0.00 34.16 2.17
777 992 2.403259 CGCTTGGTTTGGAATTTGGTC 58.597 47.619 0.00 0.00 0.00 4.02
788 1003 4.478203 TGGAATTTGGTCTGTTTCCATCA 58.522 39.130 0.00 0.00 41.95 3.07
799 1014 4.952957 TCTGTTTCCATCACAAAACTGGAA 59.047 37.500 0.00 0.00 45.04 3.53
800 1015 5.598005 TCTGTTTCCATCACAAAACTGGAAT 59.402 36.000 4.24 0.00 45.76 3.01
802 1017 5.221422 TGTTTCCATCACAAAACTGGAATCC 60.221 40.000 4.24 0.00 45.76 3.01
803 1018 4.387026 TCCATCACAAAACTGGAATCCT 57.613 40.909 0.00 0.00 36.15 3.24
804 1019 4.335416 TCCATCACAAAACTGGAATCCTC 58.665 43.478 0.00 0.00 36.15 3.71
805 1020 4.043310 TCCATCACAAAACTGGAATCCTCT 59.957 41.667 0.00 0.00 36.15 3.69
806 1021 4.157289 CCATCACAAAACTGGAATCCTCTG 59.843 45.833 0.00 0.00 31.38 3.35
807 1022 3.149196 TCACAAAACTGGAATCCTCTGC 58.851 45.455 0.00 0.00 0.00 4.26
808 1023 2.229784 CACAAAACTGGAATCCTCTGCC 59.770 50.000 0.00 0.00 0.00 4.85
809 1024 2.108952 ACAAAACTGGAATCCTCTGCCT 59.891 45.455 0.00 0.00 0.00 4.75
810 1025 2.490903 CAAAACTGGAATCCTCTGCCTG 59.509 50.000 0.00 0.00 0.00 4.85
811 1026 0.622665 AACTGGAATCCTCTGCCTGG 59.377 55.000 0.00 0.00 0.00 4.45
812 1027 0.252881 ACTGGAATCCTCTGCCTGGA 60.253 55.000 0.00 0.00 38.06 3.86
813 1028 0.914644 CTGGAATCCTCTGCCTGGAA 59.085 55.000 0.00 0.00 37.13 3.53
814 1029 0.620556 TGGAATCCTCTGCCTGGAAC 59.379 55.000 0.00 0.00 37.13 3.62
815 1030 0.462759 GGAATCCTCTGCCTGGAACG 60.463 60.000 0.00 0.00 37.13 3.95
816 1031 1.078143 AATCCTCTGCCTGGAACGC 60.078 57.895 0.00 0.00 37.13 4.84
817 1032 1.841302 AATCCTCTGCCTGGAACGCA 61.841 55.000 0.00 0.00 37.13 5.24
818 1033 2.527951 ATCCTCTGCCTGGAACGCAC 62.528 60.000 0.00 0.00 37.13 5.34
858 1073 1.348036 ACACTTCAGTTCCAGTAGCCC 59.652 52.381 0.00 0.00 0.00 5.19
893 1113 2.124109 TGCCAAGTGCCAACCGAA 60.124 55.556 0.00 0.00 40.16 4.30
912 1132 1.153549 CAGAGCTGGCCCGTTCTAC 60.154 63.158 13.06 0.00 0.00 2.59
913 1133 1.609501 AGAGCTGGCCCGTTCTACA 60.610 57.895 11.84 0.00 0.00 2.74
914 1134 1.153549 GAGCTGGCCCGTTCTACAG 60.154 63.158 0.00 0.00 0.00 2.74
915 1135 1.605058 GAGCTGGCCCGTTCTACAGA 61.605 60.000 0.00 0.00 32.86 3.41
918 1138 1.439679 CTGGCCCGTTCTACAGAAAC 58.560 55.000 0.00 0.00 35.58 2.78
919 1139 0.035739 TGGCCCGTTCTACAGAAACC 59.964 55.000 0.00 0.00 35.58 3.27
921 1141 1.271217 GGCCCGTTCTACAGAAACCTT 60.271 52.381 0.00 0.00 35.58 3.50
922 1142 2.027837 GGCCCGTTCTACAGAAACCTTA 60.028 50.000 0.00 0.00 35.58 2.69
924 1144 3.869832 GCCCGTTCTACAGAAACCTTATC 59.130 47.826 0.00 0.00 35.58 1.75
925 1145 4.622220 GCCCGTTCTACAGAAACCTTATCA 60.622 45.833 0.00 0.00 35.58 2.15
926 1146 5.109903 CCCGTTCTACAGAAACCTTATCAG 58.890 45.833 0.00 0.00 35.58 2.90
927 1147 5.105473 CCCGTTCTACAGAAACCTTATCAGA 60.105 44.000 0.00 0.00 35.58 3.27
928 1148 6.395629 CCGTTCTACAGAAACCTTATCAGAA 58.604 40.000 0.00 0.00 35.58 3.02
929 1149 6.872020 CCGTTCTACAGAAACCTTATCAGAAA 59.128 38.462 0.00 0.00 35.58 2.52
930 1150 7.549488 CCGTTCTACAGAAACCTTATCAGAAAT 59.451 37.037 0.00 0.00 35.58 2.17
931 1151 8.596380 CGTTCTACAGAAACCTTATCAGAAATC 58.404 37.037 0.00 0.00 35.58 2.17
932 1152 9.436957 GTTCTACAGAAACCTTATCAGAAATCA 57.563 33.333 0.00 0.00 35.58 2.57
933 1153 9.436957 TTCTACAGAAACCTTATCAGAAATCAC 57.563 33.333 0.00 0.00 0.00 3.06
934 1154 6.727824 ACAGAAACCTTATCAGAAATCACG 57.272 37.500 0.00 0.00 0.00 4.35
935 1155 6.464222 ACAGAAACCTTATCAGAAATCACGA 58.536 36.000 0.00 0.00 0.00 4.35
936 1156 6.369065 ACAGAAACCTTATCAGAAATCACGAC 59.631 38.462 0.00 0.00 0.00 4.34
1379 1660 2.024176 TTCTCGGGCTTGTTATCTGC 57.976 50.000 0.00 0.00 0.00 4.26
1387 1668 3.347216 GGCTTGTTATCTGCTTTCCTCA 58.653 45.455 0.00 0.00 0.00 3.86
1408 1689 8.163408 TCCTCATGGAATTAATTACTATGTGGG 58.837 37.037 24.76 21.19 39.87 4.61
1409 1690 7.944554 CCTCATGGAATTAATTACTATGTGGGT 59.055 37.037 21.53 0.00 34.57 4.51
1410 1691 9.354673 CTCATGGAATTAATTACTATGTGGGTT 57.645 33.333 11.70 0.00 0.00 4.11
1411 1692 9.349713 TCATGGAATTAATTACTATGTGGGTTC 57.650 33.333 11.70 0.00 0.00 3.62
1412 1693 7.795482 TGGAATTAATTACTATGTGGGTTCG 57.205 36.000 11.70 0.00 0.00 3.95
1413 1694 7.340256 TGGAATTAATTACTATGTGGGTTCGT 58.660 34.615 11.70 0.00 0.00 3.85
1572 2059 5.466819 TGAACCGTACTTGAACATGTCTAG 58.533 41.667 0.00 2.24 35.45 2.43
1614 2101 1.902508 ACTGGCATGCACACTACTACT 59.097 47.619 21.36 0.00 0.00 2.57
1615 2102 2.274437 CTGGCATGCACACTACTACTG 58.726 52.381 21.36 0.00 0.00 2.74
1616 2103 1.623311 TGGCATGCACACTACTACTGT 59.377 47.619 21.36 0.00 0.00 3.55
1617 2104 2.829120 TGGCATGCACACTACTACTGTA 59.171 45.455 21.36 0.00 0.00 2.74
1658 2145 4.380841 AGTTGCAATGCATCGATGATTT 57.619 36.364 29.20 17.09 38.76 2.17
1659 2146 5.503662 AGTTGCAATGCATCGATGATTTA 57.496 34.783 29.20 11.55 38.76 1.40
1700 2187 3.951680 GTCCTCCTTTGGTTCACAAGAAA 59.048 43.478 0.00 0.00 40.82 2.52
1701 2188 4.401202 GTCCTCCTTTGGTTCACAAGAAAA 59.599 41.667 0.00 0.00 40.82 2.29
1752 2239 3.005791 CCTTTAGAGCCCTTTGGTTTGTG 59.994 47.826 0.00 0.00 0.00 3.33
1840 2327 4.803098 TTAGCTCAGACCTACTGGAAAC 57.197 45.455 0.00 0.00 45.76 2.78
1871 2358 8.626526 CATTCCTATGAATCAAATGACATCACA 58.373 33.333 0.39 0.00 39.20 3.58
1906 2403 8.674173 AGAACTGAGAGTCCTATGATATTCCTA 58.326 37.037 0.00 0.00 0.00 2.94
1930 2427 0.040204 ATGAACCAAAGGAGGCCTGG 59.960 55.000 12.00 8.56 32.13 4.45
1961 2458 4.978580 GCAAAAACTTCTGAAGCAGTTAGG 59.021 41.667 17.00 6.47 30.55 2.69
1990 2487 5.441718 AGAGTCAAGAAAATAGGCATCCA 57.558 39.130 0.00 0.00 0.00 3.41
2061 2674 1.522668 TTGGCTCACAAGATTGTCCG 58.477 50.000 0.00 0.00 39.91 4.79
2150 2764 6.098266 ACACCCTTTTCATGAATATTAAGCCC 59.902 38.462 9.40 0.00 0.00 5.19
2151 2765 6.098124 CACCCTTTTCATGAATATTAAGCCCA 59.902 38.462 9.40 0.00 0.00 5.36
2152 2766 6.845975 ACCCTTTTCATGAATATTAAGCCCAT 59.154 34.615 9.40 0.00 0.00 4.00
2153 2767 7.156673 CCCTTTTCATGAATATTAAGCCCATG 58.843 38.462 9.40 7.45 36.78 3.66
2159 2773 9.502091 TTCATGAATATTAAGCCCATGTACTAC 57.498 33.333 3.38 0.00 36.79 2.73
2238 2860 2.346766 AACAGGACAACATGACTGCA 57.653 45.000 0.00 0.00 32.29 4.41
2254 2876 3.929610 GACTGCAAGATTGGTGTCTCTAC 59.070 47.826 0.00 0.00 37.43 2.59
2324 2954 9.833894 GCGCATGTTTTTATTAATCAGTTAATG 57.166 29.630 0.30 0.00 40.01 1.90
2383 3094 6.487331 CCACATAACAAGGGTGTGTAAAGTTA 59.513 38.462 4.32 0.00 41.15 2.24
2430 3150 2.579410 ATTGTGTGTTACCACCTCCC 57.421 50.000 0.00 0.00 41.09 4.30
2469 3189 3.836365 AAACCACAACCAAATTCCAGG 57.164 42.857 0.00 0.00 0.00 4.45
2484 3204 2.517959 TCCAGGCAACCAATTTGAGAG 58.482 47.619 0.00 0.00 37.39 3.20
2536 3256 1.001378 AGAACCGCTTGCACAAATGAC 60.001 47.619 0.00 0.00 0.00 3.06
2650 3376 7.566760 TTTAAGTTTGCTGTCAAGATCTCAA 57.433 32.000 0.00 0.00 33.12 3.02
2719 3445 1.672881 GCAGCAGCCAGATTTCGTTAT 59.327 47.619 0.00 0.00 33.58 1.89
2788 3514 7.779073 ACACGGTCTAGTATAGCAAGTTAAAT 58.221 34.615 0.00 0.00 38.99 1.40
2809 3535 9.528018 TTAAATTTTTACCTGTTCTTGAAGCAG 57.472 29.630 0.00 0.00 0.00 4.24
2960 3690 2.364970 CTGGAACCTGCAATTCAACCAA 59.635 45.455 11.41 0.00 0.00 3.67
3080 3810 1.074889 ACTGGCCTATGGTTCCGTTTT 59.925 47.619 3.32 0.00 0.00 2.43
3086 3816 4.501743 GGCCTATGGTTCCGTTTTGAAAAA 60.502 41.667 0.00 0.00 0.00 1.94
3111 3841 8.451908 AAAATACTTGTCTATGCTATGGTTCC 57.548 34.615 0.00 0.00 0.00 3.62
3112 3842 4.060038 ACTTGTCTATGCTATGGTTCCG 57.940 45.455 0.00 0.00 0.00 4.30
3113 3843 3.451178 ACTTGTCTATGCTATGGTTCCGT 59.549 43.478 0.00 0.00 0.00 4.69
3114 3844 4.081087 ACTTGTCTATGCTATGGTTCCGTT 60.081 41.667 0.00 0.00 0.00 4.44
3115 3845 4.481368 TGTCTATGCTATGGTTCCGTTT 57.519 40.909 0.00 0.00 0.00 3.60
3116 3846 4.439057 TGTCTATGCTATGGTTCCGTTTC 58.561 43.478 0.00 0.00 0.00 2.78
3180 3910 9.649167 AGTCTGTTAAACTAACAATAGCGTAAT 57.351 29.630 1.28 0.00 46.90 1.89
3562 4296 0.172578 CATGTGCTGCTTGTGATGGG 59.827 55.000 0.00 0.00 0.00 4.00
3739 4473 3.337358 TGTGCAACCATCATAGTGACTG 58.663 45.455 0.00 0.00 34.36 3.51
3766 4500 6.183360 TGGATGTCAGAACTCAGTACTTTTGA 60.183 38.462 0.00 0.00 0.00 2.69
3874 4608 6.884472 TCCCTGTGGAAATTAATAGTGAGA 57.116 37.500 0.00 0.00 37.86 3.27
3998 4732 6.474427 CCTGTGCAGCAATAATACTTTGATTG 59.526 38.462 0.00 0.00 34.37 2.67
4001 4735 5.105432 TGCAGCAATAATACTTTGATTGGCA 60.105 36.000 0.00 0.00 32.33 4.92
4002 4736 5.811613 GCAGCAATAATACTTTGATTGGCAA 59.188 36.000 0.68 0.68 32.33 4.52
4132 4866 1.239296 TGATCGTCCACGTCTCGGTT 61.239 55.000 0.00 0.00 40.80 4.44
4133 4867 0.797249 GATCGTCCACGTCTCGGTTG 60.797 60.000 0.00 0.00 40.80 3.77
4186 4920 4.356405 TTCTCCATCAACAGCTGAGAAA 57.644 40.909 23.35 5.88 38.68 2.52
4188 4922 4.259356 TCTCCATCAACAGCTGAGAAATG 58.741 43.478 23.35 16.55 37.52 2.32
4189 4923 3.349927 TCCATCAACAGCTGAGAAATGG 58.650 45.455 23.35 23.66 37.52 3.16
4198 4932 1.400242 GCTGAGAAATGGACACGTTGC 60.400 52.381 0.00 0.00 0.00 4.17
4271 5005 7.755373 CAGCCTGATGATATGAAAGCAAATATG 59.245 37.037 0.00 0.00 0.00 1.78
4272 5006 7.450634 AGCCTGATGATATGAAAGCAAATATGT 59.549 33.333 0.00 0.00 0.00 2.29
4284 5018 8.296713 TGAAAGCAAATATGTAGGTTCAGTTTC 58.703 33.333 0.00 0.00 0.00 2.78
4293 5027 2.949447 AGGTTCAGTTTCATGCCAACT 58.051 42.857 4.69 4.69 34.67 3.16
4403 5346 3.429822 GCTTATGTACCTGTACGAAGGCA 60.430 47.826 16.97 0.00 41.46 4.75
4467 5410 2.295349 CTCACATGCTTTCAAGGCTTGT 59.705 45.455 25.39 7.16 44.82 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.239087 GGAGTAGATACTACGAACTGGGAAG 59.761 48.000 0.00 0.00 36.50 3.46
1 2 5.128919 GGAGTAGATACTACGAACTGGGAA 58.871 45.833 0.00 0.00 36.50 3.97
2 3 4.445448 GGGAGTAGATACTACGAACTGGGA 60.445 50.000 0.00 0.00 38.05 4.37
3 4 3.819902 GGGAGTAGATACTACGAACTGGG 59.180 52.174 0.00 0.00 38.05 4.45
4 5 4.716794 AGGGAGTAGATACTACGAACTGG 58.283 47.826 0.00 0.00 38.05 4.00
5 6 4.756135 GGAGGGAGTAGATACTACGAACTG 59.244 50.000 0.00 0.00 38.05 3.16
6 7 4.411540 TGGAGGGAGTAGATACTACGAACT 59.588 45.833 0.00 0.00 38.05 3.01
7 8 4.712476 TGGAGGGAGTAGATACTACGAAC 58.288 47.826 0.00 0.00 38.05 3.95
8 9 5.579753 ATGGAGGGAGTAGATACTACGAA 57.420 43.478 0.00 0.00 38.05 3.85
9 10 5.558818 GAATGGAGGGAGTAGATACTACGA 58.441 45.833 0.00 0.00 38.05 3.43
10 11 4.392445 CGAATGGAGGGAGTAGATACTACG 59.608 50.000 0.00 0.00 38.05 3.51
11 12 4.701171 CCGAATGGAGGGAGTAGATACTAC 59.299 50.000 0.00 0.00 35.04 2.73
12 13 4.600547 TCCGAATGGAGGGAGTAGATACTA 59.399 45.833 0.00 0.00 40.17 1.82
13 14 3.398292 TCCGAATGGAGGGAGTAGATACT 59.602 47.826 0.00 0.00 40.17 2.12
14 15 3.764218 TCCGAATGGAGGGAGTAGATAC 58.236 50.000 0.00 0.00 40.17 2.24
26 27 4.430007 CGAGACAAGTAATTCCGAATGGA 58.570 43.478 0.00 0.00 44.61 3.41
27 28 3.555956 CCGAGACAAGTAATTCCGAATGG 59.444 47.826 0.00 0.00 0.00 3.16
28 29 4.430007 TCCGAGACAAGTAATTCCGAATG 58.570 43.478 0.00 0.00 0.00 2.67
29 30 4.730949 TCCGAGACAAGTAATTCCGAAT 57.269 40.909 0.00 0.00 0.00 3.34
30 31 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
31 32 5.278808 CCATATCCGAGACAAGTAATTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
32 33 4.923871 CCATATCCGAGACAAGTAATTCCG 59.076 45.833 0.00 0.00 0.00 4.30
33 34 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
34 35 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
35 36 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
36 37 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
37 38 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
38 39 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
39 40 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
40 41 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
41 42 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
42 43 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
43 44 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
44 45 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
45 46 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
46 47 9.749340 TTTAGTTCTAGATACATCCATATCCGA 57.251 33.333 0.00 0.00 32.76 4.55
73 74 8.391859 CGCAGAAATAGATGTATCTAGACGTAT 58.608 37.037 0.00 0.00 42.20 3.06
74 75 7.601508 TCGCAGAAATAGATGTATCTAGACGTA 59.398 37.037 0.00 0.00 42.20 3.57
75 76 6.427242 TCGCAGAAATAGATGTATCTAGACGT 59.573 38.462 0.00 0.00 42.20 4.34
76 77 6.739100 GTCGCAGAAATAGATGTATCTAGACG 59.261 42.308 0.00 5.27 39.84 4.18
77 78 7.585867 TGTCGCAGAAATAGATGTATCTAGAC 58.414 38.462 0.00 7.60 39.84 2.59
78 79 7.745620 TGTCGCAGAAATAGATGTATCTAGA 57.254 36.000 7.57 0.00 39.84 2.43
79 80 8.079203 ACTTGTCGCAGAAATAGATGTATCTAG 58.921 37.037 7.57 0.00 39.84 2.43
80 81 7.941919 ACTTGTCGCAGAAATAGATGTATCTA 58.058 34.615 4.22 4.22 40.45 1.98
81 82 6.810911 ACTTGTCGCAGAAATAGATGTATCT 58.189 36.000 0.00 0.00 39.69 1.98
82 83 8.575565 TTACTTGTCGCAGAAATAGATGTATC 57.424 34.615 0.00 0.00 39.69 2.24
83 84 9.547753 AATTACTTGTCGCAGAAATAGATGTAT 57.452 29.630 0.00 0.00 39.69 2.29
84 85 8.942338 AATTACTTGTCGCAGAAATAGATGTA 57.058 30.769 0.00 0.00 39.69 2.29
85 86 7.011482 GGAATTACTTGTCGCAGAAATAGATGT 59.989 37.037 0.00 0.00 39.69 3.06
86 87 7.348201 GGAATTACTTGTCGCAGAAATAGATG 58.652 38.462 0.00 0.00 39.69 2.90
87 88 6.201044 CGGAATTACTTGTCGCAGAAATAGAT 59.799 38.462 0.00 0.00 39.69 1.98
88 89 5.518847 CGGAATTACTTGTCGCAGAAATAGA 59.481 40.000 0.00 0.00 39.69 1.98
89 90 5.518847 TCGGAATTACTTGTCGCAGAAATAG 59.481 40.000 0.00 0.00 39.69 1.73
90 91 5.412640 TCGGAATTACTTGTCGCAGAAATA 58.587 37.500 0.00 0.00 39.69 1.40
91 92 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
92 93 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
93 94 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
94 95 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
95 96 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
96 97 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
97 98 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
98 99 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
99 100 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
100 101 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
101 102 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
102 103 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
103 104 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
104 105 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
105 106 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
106 107 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
107 108 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
108 109 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
109 110 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
110 111 1.878734 GATACTACTCCCTCCGTTCGG 59.121 57.143 4.74 4.74 0.00 4.30
111 112 2.569059 TGATACTACTCCCTCCGTTCG 58.431 52.381 0.00 0.00 0.00 3.95
112 113 3.952967 AGTTGATACTACTCCCTCCGTTC 59.047 47.826 0.00 0.00 31.21 3.95
113 114 3.700038 CAGTTGATACTACTCCCTCCGTT 59.300 47.826 0.00 0.00 31.96 4.44
114 115 3.288964 CAGTTGATACTACTCCCTCCGT 58.711 50.000 0.00 0.00 31.96 4.69
115 116 3.288964 ACAGTTGATACTACTCCCTCCG 58.711 50.000 0.00 0.00 31.96 4.63
116 117 5.221283 GCTAACAGTTGATACTACTCCCTCC 60.221 48.000 0.00 0.00 31.96 4.30
117 118 5.595133 AGCTAACAGTTGATACTACTCCCTC 59.405 44.000 0.00 0.00 31.96 4.30
118 119 5.361285 CAGCTAACAGTTGATACTACTCCCT 59.639 44.000 0.00 0.00 31.96 4.20
119 120 5.360144 TCAGCTAACAGTTGATACTACTCCC 59.640 44.000 0.00 0.00 30.30 4.30
120 121 6.127703 TGTCAGCTAACAGTTGATACTACTCC 60.128 42.308 0.00 0.00 37.76 3.85
121 122 6.853720 TGTCAGCTAACAGTTGATACTACTC 58.146 40.000 0.00 0.00 37.76 2.59
122 123 6.835819 TGTCAGCTAACAGTTGATACTACT 57.164 37.500 0.00 0.00 37.76 2.57
123 124 7.599245 AGTTTGTCAGCTAACAGTTGATACTAC 59.401 37.037 0.00 0.00 37.76 2.73
133 134 3.969117 TGCAAGTTTGTCAGCTAACAG 57.031 42.857 0.00 0.00 33.78 3.16
192 193 9.725019 AAAAATGACAATCTAGTGATCAGTACA 57.275 29.630 6.14 2.86 31.51 2.90
196 197 9.770503 CTTCAAAAATGACAATCTAGTGATCAG 57.229 33.333 0.00 0.00 31.51 2.90
208 209 5.534207 AGCACATCCTTCAAAAATGACAA 57.466 34.783 0.00 0.00 0.00 3.18
283 301 4.274147 TCACTTCCCTGTTAAACAAGCAA 58.726 39.130 0.00 0.00 0.00 3.91
296 314 0.106819 GGATGCTGCATCACTTCCCT 60.107 55.000 35.47 5.64 42.13 4.20
302 320 1.337071 CAAGGATGGATGCTGCATCAC 59.663 52.381 35.47 26.39 45.52 3.06
308 326 2.947652 CCAGTAACAAGGATGGATGCTG 59.052 50.000 0.00 0.00 34.60 4.41
343 386 6.575162 ACATCTACGCATACACATGAGATA 57.425 37.500 0.00 0.00 35.69 1.98
348 391 6.346120 GCTTTCTACATCTACGCATACACATG 60.346 42.308 0.00 0.00 35.07 3.21
349 392 5.692204 GCTTTCTACATCTACGCATACACAT 59.308 40.000 0.00 0.00 0.00 3.21
350 393 5.041287 GCTTTCTACATCTACGCATACACA 58.959 41.667 0.00 0.00 0.00 3.72
351 394 5.174035 CAGCTTTCTACATCTACGCATACAC 59.826 44.000 0.00 0.00 0.00 2.90
359 404 5.639506 TGTTTGCTCAGCTTTCTACATCTAC 59.360 40.000 0.00 0.00 0.00 2.59
365 410 3.809832 TCACTGTTTGCTCAGCTTTCTAC 59.190 43.478 0.00 0.00 38.84 2.59
368 413 3.181497 TGTTCACTGTTTGCTCAGCTTTC 60.181 43.478 0.00 0.00 38.84 2.62
369 414 2.754552 TGTTCACTGTTTGCTCAGCTTT 59.245 40.909 0.00 0.00 38.84 3.51
372 497 2.849880 TTGTTCACTGTTTGCTCAGC 57.150 45.000 0.00 0.00 38.84 4.26
384 509 5.342259 GCTTGTAACATCGGAATTTGTTCAC 59.658 40.000 0.00 0.00 37.29 3.18
395 520 1.821216 AACTGGGCTTGTAACATCGG 58.179 50.000 0.00 0.00 0.00 4.18
414 539 5.125356 TCTGATGCACTTCTGTCTGAAAAA 58.875 37.500 0.00 0.00 33.79 1.94
416 541 4.341366 TCTGATGCACTTCTGTCTGAAA 57.659 40.909 0.00 0.00 33.79 2.69
417 542 4.548451 ATCTGATGCACTTCTGTCTGAA 57.452 40.909 0.00 0.00 0.00 3.02
418 543 5.361857 TCATATCTGATGCACTTCTGTCTGA 59.638 40.000 0.00 0.00 0.00 3.27
422 547 5.549347 GGATCATATCTGATGCACTTCTGT 58.451 41.667 7.58 0.00 46.35 3.41
431 556 7.280428 GTGGCATTAAGAGGATCATATCTGATG 59.720 40.741 0.00 4.98 42.27 3.07
432 557 7.182387 AGTGGCATTAAGAGGATCATATCTGAT 59.818 37.037 0.00 0.00 44.93 2.90
433 558 6.499699 AGTGGCATTAAGAGGATCATATCTGA 59.500 38.462 0.00 0.00 37.82 3.27
434 559 6.709281 AGTGGCATTAAGAGGATCATATCTG 58.291 40.000 0.00 0.00 37.82 2.90
436 561 6.939163 ACAAGTGGCATTAAGAGGATCATATC 59.061 38.462 0.00 0.00 37.82 1.63
437 562 6.845908 ACAAGTGGCATTAAGAGGATCATAT 58.154 36.000 0.00 0.00 37.82 1.78
438 563 6.252599 ACAAGTGGCATTAAGAGGATCATA 57.747 37.500 0.00 0.00 37.82 2.15
440 565 4.574674 ACAAGTGGCATTAAGAGGATCA 57.425 40.909 0.00 0.00 37.82 2.92
441 566 5.904362 AAACAAGTGGCATTAAGAGGATC 57.096 39.130 0.00 0.00 0.00 3.36
442 567 6.458210 CAAAAACAAGTGGCATTAAGAGGAT 58.542 36.000 0.00 0.00 0.00 3.24
466 591 5.005740 TGCATGAATATAGATTGGCAGACC 58.994 41.667 0.00 0.00 0.00 3.85
470 595 7.953752 TCAAAATGCATGAATATAGATTGGCA 58.046 30.769 0.00 3.94 31.57 4.92
471 596 8.869897 CATCAAAATGCATGAATATAGATTGGC 58.130 33.333 0.00 0.00 0.00 4.52
472 597 9.923143 ACATCAAAATGCATGAATATAGATTGG 57.077 29.630 0.00 0.00 36.26 3.16
477 602 9.836076 CCAGTACATCAAAATGCATGAATATAG 57.164 33.333 0.00 0.00 36.26 1.31
479 604 8.467963 TCCAGTACATCAAAATGCATGAATAT 57.532 30.769 0.00 0.00 36.26 1.28
480 605 7.878547 TCCAGTACATCAAAATGCATGAATA 57.121 32.000 0.00 0.00 36.26 1.75
485 610 6.542005 TCGTAATCCAGTACATCAAAATGCAT 59.458 34.615 0.00 0.00 36.26 3.96
486 611 5.877564 TCGTAATCCAGTACATCAAAATGCA 59.122 36.000 0.00 0.00 36.26 3.96
487 612 6.037172 AGTCGTAATCCAGTACATCAAAATGC 59.963 38.462 0.00 0.00 36.26 3.56
488 613 7.064609 ACAGTCGTAATCCAGTACATCAAAATG 59.935 37.037 0.00 0.00 38.93 2.32
489 614 7.064609 CACAGTCGTAATCCAGTACATCAAAAT 59.935 37.037 0.00 0.00 0.00 1.82
493 618 4.676986 GCACAGTCGTAATCCAGTACATCA 60.677 45.833 0.00 0.00 0.00 3.07
495 620 3.194755 TGCACAGTCGTAATCCAGTACAT 59.805 43.478 0.00 0.00 0.00 2.29
496 621 2.559231 TGCACAGTCGTAATCCAGTACA 59.441 45.455 0.00 0.00 0.00 2.90
497 622 3.226346 TGCACAGTCGTAATCCAGTAC 57.774 47.619 0.00 0.00 0.00 2.73
498 623 3.945981 TTGCACAGTCGTAATCCAGTA 57.054 42.857 0.00 0.00 0.00 2.74
505 705 0.687920 TCCCCATTGCACAGTCGTAA 59.312 50.000 0.00 0.00 0.00 3.18
513 713 3.290710 ACAACATATCTCCCCATTGCAC 58.709 45.455 0.00 0.00 0.00 4.57
518 718 3.122480 TGGTGACAACATATCTCCCCAT 58.878 45.455 0.00 0.00 37.44 4.00
522 722 4.696479 ATCCTGGTGACAACATATCTCC 57.304 45.455 0.00 0.00 42.06 3.71
526 726 5.819991 AGTCAAATCCTGGTGACAACATAT 58.180 37.500 15.69 0.00 45.40 1.78
527 727 5.241403 AGTCAAATCCTGGTGACAACATA 57.759 39.130 15.69 0.00 45.40 2.29
534 734 5.003160 CACAACATAGTCAAATCCTGGTGA 58.997 41.667 0.00 0.00 0.00 4.02
537 737 4.761739 ACACACAACATAGTCAAATCCTGG 59.238 41.667 0.00 0.00 0.00 4.45
540 740 4.759693 TCCACACACAACATAGTCAAATCC 59.240 41.667 0.00 0.00 0.00 3.01
557 758 7.721286 ATTTGAAATCTCTATCGATCCACAC 57.279 36.000 0.00 0.00 0.00 3.82
558 759 8.421002 TGTATTTGAAATCTCTATCGATCCACA 58.579 33.333 0.00 0.00 0.00 4.17
559 760 8.818141 TGTATTTGAAATCTCTATCGATCCAC 57.182 34.615 0.00 0.00 0.00 4.02
560 761 9.261180 GTTGTATTTGAAATCTCTATCGATCCA 57.739 33.333 0.00 0.00 0.00 3.41
561 762 9.261180 TGTTGTATTTGAAATCTCTATCGATCC 57.739 33.333 0.00 0.00 0.00 3.36
565 766 9.642312 CACATGTTGTATTTGAAATCTCTATCG 57.358 33.333 0.00 0.00 0.00 2.92
566 767 9.941664 CCACATGTTGTATTTGAAATCTCTATC 57.058 33.333 0.00 0.00 0.00 2.08
567 768 8.408601 GCCACATGTTGTATTTGAAATCTCTAT 58.591 33.333 0.00 0.00 0.00 1.98
568 769 7.611467 AGCCACATGTTGTATTTGAAATCTCTA 59.389 33.333 0.00 0.00 0.00 2.43
570 771 6.624423 AGCCACATGTTGTATTTGAAATCTC 58.376 36.000 0.00 0.00 0.00 2.75
571 772 6.594788 AGCCACATGTTGTATTTGAAATCT 57.405 33.333 0.00 0.00 0.00 2.40
572 773 7.360269 CCAAAGCCACATGTTGTATTTGAAATC 60.360 37.037 21.05 0.00 33.24 2.17
573 774 6.427547 CCAAAGCCACATGTTGTATTTGAAAT 59.572 34.615 21.05 0.00 33.24 2.17
574 775 5.757320 CCAAAGCCACATGTTGTATTTGAAA 59.243 36.000 21.05 0.00 33.24 2.69
575 776 5.069648 TCCAAAGCCACATGTTGTATTTGAA 59.930 36.000 21.05 7.52 33.24 2.69
576 777 4.586421 TCCAAAGCCACATGTTGTATTTGA 59.414 37.500 21.05 8.11 33.24 2.69
577 778 4.880759 TCCAAAGCCACATGTTGTATTTG 58.119 39.130 16.24 16.24 32.22 2.32
578 779 5.543507 TTCCAAAGCCACATGTTGTATTT 57.456 34.783 0.00 0.00 0.00 1.40
580 781 5.743636 ATTTCCAAAGCCACATGTTGTAT 57.256 34.783 0.00 0.00 0.00 2.29
581 782 5.510520 GGAATTTCCAAAGCCACATGTTGTA 60.511 40.000 10.67 0.00 36.28 2.41
582 783 4.379652 GAATTTCCAAAGCCACATGTTGT 58.620 39.130 0.00 0.00 0.00 3.32
583 784 3.747529 GGAATTTCCAAAGCCACATGTTG 59.252 43.478 10.67 0.00 36.28 3.33
584 785 3.390639 TGGAATTTCCAAAGCCACATGTT 59.609 39.130 15.83 0.00 45.00 2.71
585 786 2.971330 TGGAATTTCCAAAGCCACATGT 59.029 40.909 15.83 0.00 45.00 3.21
586 787 3.681593 TGGAATTTCCAAAGCCACATG 57.318 42.857 15.83 0.00 45.00 3.21
602 803 8.871629 TGCAAATCCTAGTATAAACTTTGGAA 57.128 30.769 0.00 0.00 39.21 3.53
612 813 9.982651 GAGACAACTTATGCAAATCCTAGTATA 57.017 33.333 0.00 0.00 0.00 1.47
621 822 7.275888 TCAACTTGAGACAACTTATGCAAAT 57.724 32.000 0.00 0.00 0.00 2.32
622 823 6.691754 TCAACTTGAGACAACTTATGCAAA 57.308 33.333 0.00 0.00 0.00 3.68
626 827 7.015226 TGTGTTCAACTTGAGACAACTTATG 57.985 36.000 7.79 0.00 0.00 1.90
627 828 7.624360 TTGTGTTCAACTTGAGACAACTTAT 57.376 32.000 11.67 0.00 30.48 1.73
628 829 7.441890 TTTGTGTTCAACTTGAGACAACTTA 57.558 32.000 13.95 3.08 33.26 2.24
631 839 6.149633 ACTTTTGTGTTCAACTTGAGACAAC 58.850 36.000 13.95 2.47 33.26 3.32
639 847 3.057174 TCCGCAACTTTTGTGTTCAACTT 60.057 39.130 0.00 0.00 39.46 2.66
640 848 2.490115 TCCGCAACTTTTGTGTTCAACT 59.510 40.909 0.00 0.00 39.46 3.16
650 858 0.397957 AAAGGGGGTCCGCAACTTTT 60.398 50.000 8.40 0.46 38.33 2.27
656 864 0.912487 ATACTGAAAGGGGGTCCGCA 60.912 55.000 8.40 0.00 39.30 5.69
673 882 2.026262 GGTGTTTTCCTCTCCAGGCATA 60.026 50.000 0.00 0.00 40.12 3.14
688 897 3.201266 TGGAAACTGGAGTAGTGGTGTTT 59.799 43.478 0.00 0.00 40.26 2.83
691 900 2.632996 TCTGGAAACTGGAGTAGTGGTG 59.367 50.000 0.00 0.00 40.26 4.17
692 901 2.972348 TCTGGAAACTGGAGTAGTGGT 58.028 47.619 0.00 0.00 40.26 4.16
697 906 2.571653 CCACCATCTGGAAACTGGAGTA 59.428 50.000 2.55 0.00 43.95 2.59
730 939 2.353208 GGCAGACTGACCAGTAACTCTG 60.353 54.545 6.65 7.31 42.66 3.35
731 940 1.896465 GGCAGACTGACCAGTAACTCT 59.104 52.381 6.65 0.00 42.66 3.24
732 941 1.402984 CGGCAGACTGACCAGTAACTC 60.403 57.143 6.65 0.00 42.66 3.01
759 974 4.670896 ACAGACCAAATTCCAAACCAAG 57.329 40.909 0.00 0.00 0.00 3.61
788 1003 2.108952 AGGCAGAGGATTCCAGTTTTGT 59.891 45.455 5.29 0.00 0.00 2.83
799 1014 2.293318 TGCGTTCCAGGCAGAGGAT 61.293 57.895 0.00 0.00 33.67 3.24
800 1015 2.922503 TGCGTTCCAGGCAGAGGA 60.923 61.111 0.00 0.00 33.67 3.71
802 1017 3.114616 CGTGCGTTCCAGGCAGAG 61.115 66.667 0.00 0.00 39.87 3.35
807 1022 1.781025 TTCTTTGCGTGCGTTCCAGG 61.781 55.000 0.00 0.00 0.00 4.45
808 1023 0.238289 ATTCTTTGCGTGCGTTCCAG 59.762 50.000 0.00 0.00 0.00 3.86
809 1024 0.665835 AATTCTTTGCGTGCGTTCCA 59.334 45.000 0.00 0.00 0.00 3.53
810 1025 1.766069 AAATTCTTTGCGTGCGTTCC 58.234 45.000 0.00 0.00 0.00 3.62
811 1026 3.140281 CAAAATTCTTTGCGTGCGTTC 57.860 42.857 0.00 0.00 35.81 3.95
841 1056 0.253327 GGGGGCTACTGGAACTGAAG 59.747 60.000 0.00 0.00 0.00 3.02
858 1073 1.407979 GCAGCAATTTCTCCAGATGGG 59.592 52.381 0.00 0.00 35.41 4.00
893 1113 1.609501 TAGAACGGGCCAGCTCTGT 60.610 57.895 17.80 0.00 0.00 3.41
912 1132 6.183360 GGTCGTGATTTCTGATAAGGTTTCTG 60.183 42.308 0.00 0.00 0.00 3.02
913 1133 5.875359 GGTCGTGATTTCTGATAAGGTTTCT 59.125 40.000 0.00 0.00 0.00 2.52
914 1134 5.642063 TGGTCGTGATTTCTGATAAGGTTTC 59.358 40.000 0.00 0.00 0.00 2.78
915 1135 5.556915 TGGTCGTGATTTCTGATAAGGTTT 58.443 37.500 0.00 0.00 0.00 3.27
918 1138 5.011090 TCTGGTCGTGATTTCTGATAAGG 57.989 43.478 0.00 0.00 0.00 2.69
919 1139 6.968131 TTTCTGGTCGTGATTTCTGATAAG 57.032 37.500 0.00 0.00 0.00 1.73
921 1141 5.347635 CGTTTTCTGGTCGTGATTTCTGATA 59.652 40.000 0.00 0.00 0.00 2.15
922 1142 4.152402 CGTTTTCTGGTCGTGATTTCTGAT 59.848 41.667 0.00 0.00 0.00 2.90
924 1144 3.493129 TCGTTTTCTGGTCGTGATTTCTG 59.507 43.478 0.00 0.00 0.00 3.02
925 1145 3.724374 TCGTTTTCTGGTCGTGATTTCT 58.276 40.909 0.00 0.00 0.00 2.52
926 1146 4.209112 GTTCGTTTTCTGGTCGTGATTTC 58.791 43.478 0.00 0.00 0.00 2.17
927 1147 3.302870 CGTTCGTTTTCTGGTCGTGATTT 60.303 43.478 0.00 0.00 0.00 2.17
928 1148 2.220133 CGTTCGTTTTCTGGTCGTGATT 59.780 45.455 0.00 0.00 0.00 2.57
929 1149 1.790623 CGTTCGTTTTCTGGTCGTGAT 59.209 47.619 0.00 0.00 0.00 3.06
930 1150 1.202203 CGTTCGTTTTCTGGTCGTGA 58.798 50.000 0.00 0.00 0.00 4.35
931 1151 0.231279 CCGTTCGTTTTCTGGTCGTG 59.769 55.000 0.00 0.00 0.00 4.35
932 1152 0.877213 CCCGTTCGTTTTCTGGTCGT 60.877 55.000 0.00 0.00 0.00 4.34
933 1153 1.562575 CCCCGTTCGTTTTCTGGTCG 61.563 60.000 0.00 0.00 0.00 4.79
934 1154 0.249996 TCCCCGTTCGTTTTCTGGTC 60.250 55.000 0.00 0.00 0.00 4.02
935 1155 0.399075 ATCCCCGTTCGTTTTCTGGT 59.601 50.000 0.00 0.00 0.00 4.00
936 1156 1.084289 GATCCCCGTTCGTTTTCTGG 58.916 55.000 0.00 0.00 0.00 3.86
1138 1388 4.890306 GGGGAGGGAGAGGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
1139 1389 4.179599 GGGGGAGGGAGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1140 1390 3.039526 AGGGGGAGGGAGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
1141 1391 3.036959 GAGGGGGAGGGAGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
1142 1392 3.039526 AGAGGGGGAGGGAGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
1143 1393 2.612251 GAGAGGGGGAGGGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
1144 1394 2.197324 CGAGAGGGGGAGGGAGAG 59.803 72.222 0.00 0.00 0.00 3.20
1145 1395 2.617538 ACGAGAGGGGGAGGGAGA 60.618 66.667 0.00 0.00 0.00 3.71
1146 1396 2.443016 CACGAGAGGGGGAGGGAG 60.443 72.222 0.00 0.00 0.00 4.30
1387 1668 7.996644 ACGAACCCACATAGTAATTAATTCCAT 59.003 33.333 3.39 0.00 0.00 3.41
1412 1693 4.413495 TTGTATGGTAAAAGCGCAGAAC 57.587 40.909 11.47 1.42 0.00 3.01
1413 1694 4.757657 TCTTTGTATGGTAAAAGCGCAGAA 59.242 37.500 11.47 0.00 34.14 3.02
1450 1731 0.172578 CGGAACAGACAGCGATGGTA 59.827 55.000 5.32 0.00 0.00 3.25
1451 1732 1.079819 CGGAACAGACAGCGATGGT 60.080 57.895 5.32 0.00 0.00 3.55
1452 1733 0.179100 ATCGGAACAGACAGCGATGG 60.179 55.000 5.32 0.00 0.00 3.51
1453 1734 1.203928 GATCGGAACAGACAGCGATG 58.796 55.000 0.00 0.00 0.00 3.84
1456 1737 0.716108 GTTGATCGGAACAGACAGCG 59.284 55.000 0.00 0.00 0.00 5.18
1510 1997 3.748048 AGTTGATCACACTGACGAATTGG 59.252 43.478 0.00 0.00 0.00 3.16
1572 2059 1.977009 GGTGGCAACCCAGGTTAGC 60.977 63.158 0.00 8.34 43.18 3.09
1614 2101 5.728937 AGGATAGGAGTAGGACTTGTACA 57.271 43.478 0.00 0.00 0.00 2.90
1615 2102 6.840527 ACTAGGATAGGAGTAGGACTTGTAC 58.159 44.000 0.00 0.00 44.97 2.90
1616 2103 7.288560 CAACTAGGATAGGAGTAGGACTTGTA 58.711 42.308 0.00 0.00 44.97 2.41
1617 2104 5.998128 ACTAGGATAGGAGTAGGACTTGT 57.002 43.478 0.00 0.00 44.97 3.16
1658 2145 3.864243 ACTCAACGTTTGTGACCTGTTA 58.136 40.909 0.00 0.00 0.00 2.41
1659 2146 2.676342 GACTCAACGTTTGTGACCTGTT 59.324 45.455 0.00 0.00 0.00 3.16
1789 2276 6.391227 TTTCTCCTTTGAAATGTGAAGGAC 57.609 37.500 0.15 0.00 42.90 3.85
1840 2327 8.635328 TGTCATTTGATTCATAGGAATGGAATG 58.365 33.333 19.21 19.21 43.69 2.67
1871 2358 8.584157 CATAGGACTCTCAGTTCTATAGCAAAT 58.416 37.037 4.45 0.00 43.47 2.32
1906 2403 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
1930 2427 3.520569 TCAGAAGTTTTTGCAAACCAGC 58.479 40.909 12.39 0.00 43.08 4.85
1961 2458 6.089476 GCCTATTTTCTTGACTCTTGCTTTC 58.911 40.000 0.00 0.00 0.00 2.62
1990 2487 9.520515 ACAGGACAAACTTGTATCAGATAAAAT 57.479 29.630 0.00 0.00 42.43 1.82
2150 2764 4.619760 CGGTATGTATTGCGGTAGTACATG 59.380 45.833 19.37 0.00 40.91 3.21
2151 2765 4.520111 TCGGTATGTATTGCGGTAGTACAT 59.480 41.667 15.99 15.99 42.63 2.29
2152 2766 3.882288 TCGGTATGTATTGCGGTAGTACA 59.118 43.478 4.13 4.13 36.16 2.90
2153 2767 4.488126 TCGGTATGTATTGCGGTAGTAC 57.512 45.455 0.00 0.00 0.00 2.73
2159 2773 2.163818 ACCATCGGTATGTATTGCGG 57.836 50.000 0.00 0.00 32.11 5.69
2238 2860 8.697292 GGTCTAAATAGTAGAGACACCAATCTT 58.303 37.037 10.28 0.00 41.18 2.40
2254 2876 8.637196 AAAGACTGGAAAAAGGGTCTAAATAG 57.363 34.615 0.00 0.00 37.97 1.73
2324 2954 6.925610 TGTCATGTTGGAGTATAATGCTTC 57.074 37.500 0.00 0.00 0.00 3.86
2397 3117 9.169592 GGTAACACACAATACACTATGGTAATT 57.830 33.333 0.00 0.00 0.00 1.40
2398 3118 8.322828 TGGTAACACACAATACACTATGGTAAT 58.677 33.333 0.00 0.00 46.17 1.89
2399 3119 7.677892 TGGTAACACACAATACACTATGGTAA 58.322 34.615 0.00 0.00 46.17 2.85
2400 3120 7.242322 TGGTAACACACAATACACTATGGTA 57.758 36.000 0.00 0.00 46.17 3.25
2401 3121 6.116711 TGGTAACACACAATACACTATGGT 57.883 37.500 0.00 0.00 46.17 3.55
2430 3150 2.910688 TTGGAATAAGCCTAGCCTCG 57.089 50.000 0.00 0.00 0.00 4.63
2469 3189 2.030805 AGTTCGCTCTCAAATTGGTTGC 60.031 45.455 0.00 0.00 37.13 4.17
2484 3204 6.435428 TGTGGAAAAGAAATTTCTAGTTCGC 58.565 36.000 20.76 19.21 45.57 4.70
2582 3302 3.763897 GGGTAGCATTTGTGTCCTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
2585 3305 1.702401 TGGGTAGCATTTGTGTCCTGA 59.298 47.619 0.00 0.00 0.00 3.86
2586 3306 2.198827 TGGGTAGCATTTGTGTCCTG 57.801 50.000 0.00 0.00 0.00 3.86
2623 3347 7.498900 TGAGATCTTGACAGCAAACTTAAAAGA 59.501 33.333 0.00 0.00 32.73 2.52
2624 3348 7.642669 TGAGATCTTGACAGCAAACTTAAAAG 58.357 34.615 0.00 0.00 32.73 2.27
2678 3404 7.921214 TGCTGCTATTGTAGACTAGAATGTTAC 59.079 37.037 13.69 3.13 0.00 2.50
2788 3514 5.514274 CCTGCTTCAAGAACAGGTAAAAA 57.486 39.130 16.53 0.00 44.91 1.94
2809 3535 3.713826 TTCACCTAATGAACCTGTCCC 57.286 47.619 0.00 0.00 42.62 4.46
2924 3650 6.767902 GCAGGTTCCAGATTAATCAACAGATA 59.232 38.462 17.56 0.00 0.00 1.98
2977 3707 3.701040 ACATGCCATTCCAGTATCAAACC 59.299 43.478 0.00 0.00 0.00 3.27
3086 3816 7.226720 CGGAACCATAGCATAGACAAGTATTTT 59.773 37.037 0.00 0.00 0.00 1.82
3087 3817 6.706270 CGGAACCATAGCATAGACAAGTATTT 59.294 38.462 0.00 0.00 0.00 1.40
3088 3818 6.183360 ACGGAACCATAGCATAGACAAGTATT 60.183 38.462 0.00 0.00 0.00 1.89
3089 3819 5.304614 ACGGAACCATAGCATAGACAAGTAT 59.695 40.000 0.00 0.00 0.00 2.12
3091 3821 3.451178 ACGGAACCATAGCATAGACAAGT 59.549 43.478 0.00 0.00 0.00 3.16
3092 3822 4.060038 ACGGAACCATAGCATAGACAAG 57.940 45.455 0.00 0.00 0.00 3.16
3093 3823 4.481368 AACGGAACCATAGCATAGACAA 57.519 40.909 0.00 0.00 0.00 3.18
3096 3826 3.382227 TCGAAACGGAACCATAGCATAGA 59.618 43.478 0.00 0.00 0.00 1.98
3097 3827 3.713288 TCGAAACGGAACCATAGCATAG 58.287 45.455 0.00 0.00 0.00 2.23
3098 3828 3.804786 TCGAAACGGAACCATAGCATA 57.195 42.857 0.00 0.00 0.00 3.14
3099 3829 2.684001 TCGAAACGGAACCATAGCAT 57.316 45.000 0.00 0.00 0.00 3.79
3100 3830 2.459060 TTCGAAACGGAACCATAGCA 57.541 45.000 0.00 0.00 0.00 3.49
3101 3831 3.817148 TTTTCGAAACGGAACCATAGC 57.183 42.857 10.79 0.00 0.00 2.97
3410 4142 3.244911 CCTAGTCAAACCACTGGGAATGT 60.245 47.826 0.00 0.00 45.77 2.71
3533 4267 2.082231 AGCAGCACATGTGATCTCAAC 58.918 47.619 29.80 9.56 0.00 3.18
3559 4293 3.349304 ACATGCCCCAGATGCCCA 61.349 61.111 0.00 0.00 0.00 5.36
3562 4296 0.966875 TGAACACATGCCCCAGATGC 60.967 55.000 0.00 0.00 0.00 3.91
3713 4447 5.048782 GTCACTATGATGGTTGCACAAAAGA 60.049 40.000 0.00 0.00 0.00 2.52
3739 4473 2.758736 ACTGAGTTCTGACATCCAGC 57.241 50.000 0.00 0.00 42.62 4.85
3766 4500 2.539302 ACTTGGGGCTTGCATTATTGT 58.461 42.857 0.00 0.00 0.00 2.71
3874 4608 7.491048 CAGGCGGCTTTATTTTTAAATGTACAT 59.509 33.333 9.66 1.41 0.00 2.29
3998 4732 5.323371 TGCCAAACAGACTATTAATTGCC 57.677 39.130 0.00 0.00 0.00 4.52
4132 4866 5.299028 ACATCACAAATTGTAGTGTGCTTCA 59.701 36.000 12.64 0.00 43.91 3.02
4133 4867 5.762045 ACATCACAAATTGTAGTGTGCTTC 58.238 37.500 12.64 0.00 43.91 3.86
4186 4920 0.317770 CAAAAGCGCAACGTGTCCAT 60.318 50.000 11.47 0.00 0.00 3.41
4188 4922 0.928451 GACAAAAGCGCAACGTGTCC 60.928 55.000 11.47 0.00 33.95 4.02
4189 4923 0.027586 AGACAAAAGCGCAACGTGTC 59.972 50.000 19.61 19.61 39.09 3.67
4271 5005 3.821033 AGTTGGCATGAAACTGAACCTAC 59.179 43.478 12.04 1.85 36.52 3.18
4272 5006 4.098914 AGTTGGCATGAAACTGAACCTA 57.901 40.909 12.04 0.00 36.52 3.08
4368 5311 9.144298 ACAGGTACATAAGCATAGTACATAACT 57.856 33.333 0.00 0.00 39.78 2.24
4467 5410 2.419990 CCTCCGGTCAAATGCAGATGTA 60.420 50.000 0.00 0.00 0.00 2.29
4585 5531 5.042463 TCCCGCTTTGATGGTTATATTCA 57.958 39.130 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.