Multiple sequence alignment - TraesCS1A01G251300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G251300 chr1A 100.000 3027 0 0 1 3027 442796362 442799388 0.000000e+00 5590.0
1 TraesCS1A01G251300 chr1A 82.716 162 26 2 723 883 68020571 68020731 3.150000e-30 143.0
2 TraesCS1A01G251300 chr1A 94.253 87 3 2 2604 2689 552322369 552322454 6.810000e-27 132.0
3 TraesCS1A01G251300 chr1A 83.333 102 17 0 773 874 496316296 496316397 8.930000e-16 95.3
4 TraesCS1A01G251300 chr1D 96.476 1958 42 10 1084 3027 343174890 343176834 0.000000e+00 3208.0
5 TraesCS1A01G251300 chr1D 97.909 287 4 2 1021 1307 343174043 343174327 2.100000e-136 496.0
6 TraesCS1A01G251300 chr1D 81.407 199 30 2 729 920 324339108 324338910 4.040000e-34 156.0
7 TraesCS1A01G251300 chr1D 79.126 206 43 0 723 928 492481980 492481775 3.150000e-30 143.0
8 TraesCS1A01G251300 chr1D 96.667 60 1 1 973 1031 343173971 343174030 6.910000e-17 99.0
9 TraesCS1A01G251300 chr1B 96.571 875 23 2 1015 1889 460269744 460270611 0.000000e+00 1443.0
10 TraesCS1A01G251300 chr1B 92.763 608 26 11 1881 2486 460271920 460272511 0.000000e+00 863.0
11 TraesCS1A01G251300 chr1B 89.451 455 42 2 273 722 460267812 460268265 1.220000e-158 569.0
12 TraesCS1A01G251300 chr1B 95.522 67 2 1 973 1038 460268256 460268322 4.130000e-19 106.0
13 TraesCS1A01G251300 chr4A 81.395 215 30 5 723 929 467292824 467292612 1.870000e-37 167.0
14 TraesCS1A01G251300 chr4A 82.099 162 24 5 34 191 295852027 295852187 1.890000e-27 134.0
15 TraesCS1A01G251300 chr4A 89.706 68 6 1 905 972 521895942 521896008 5.380000e-13 86.1
16 TraesCS1A01G251300 chr2D 79.098 244 36 7 727 957 633234188 633233947 1.450000e-33 154.0
17 TraesCS1A01G251300 chr2D 95.349 86 4 0 2603 2688 615394354 615394269 1.460000e-28 137.0
18 TraesCS1A01G251300 chr2D 82.468 154 23 3 34 184 392714146 392714298 6.810000e-27 132.0
19 TraesCS1A01G251300 chr2D 94.186 86 4 1 2604 2688 95418728 95418643 2.450000e-26 130.0
20 TraesCS1A01G251300 chr2D 81.818 154 24 2 34 184 214125676 214125828 3.170000e-25 126.0
21 TraesCS1A01G251300 chr2D 84.348 115 18 0 152 266 501018740 501018854 2.470000e-21 113.0
22 TraesCS1A01G251300 chr2D 82.000 100 18 0 170 269 266793698 266793599 5.380000e-13 86.1
23 TraesCS1A01G251300 chr2D 80.180 111 20 2 152 261 193711304 193711413 6.960000e-12 82.4
24 TraesCS1A01G251300 chr7D 81.564 179 28 3 97 271 343037615 343037438 3.150000e-30 143.0
25 TraesCS1A01G251300 chr7D 80.337 178 31 2 97 271 326695319 326695495 6.810000e-27 132.0
26 TraesCS1A01G251300 chr7D 93.023 86 6 0 2604 2689 633878851 633878766 3.170000e-25 126.0
27 TraesCS1A01G251300 chr7D 92.754 69 5 0 905 973 595720629 595720561 1.920000e-17 100.0
28 TraesCS1A01G251300 chr5B 79.412 204 39 3 726 929 259557955 259558155 1.130000e-29 141.0
29 TraesCS1A01G251300 chr5B 94.118 85 5 0 2604 2688 629934766 629934850 2.450000e-26 130.0
30 TraesCS1A01G251300 chr5B 93.023 86 6 0 2604 2689 488608199 488608114 3.170000e-25 126.0
31 TraesCS1A01G251300 chr6A 80.100 201 26 6 728 920 556094865 556095059 1.460000e-28 137.0
32 TraesCS1A01G251300 chr5D 78.571 224 36 4 717 928 532664620 532664397 1.460000e-28 137.0
33 TraesCS1A01G251300 chr4D 79.343 213 31 6 723 929 507786254 507786459 1.460000e-28 137.0
34 TraesCS1A01G251300 chr4D 87.069 116 15 0 1 116 12913428 12913313 6.810000e-27 132.0
35 TraesCS1A01G251300 chr4D 87.500 96 12 0 168 263 75944132 75944227 8.870000e-21 111.0
36 TraesCS1A01G251300 chr3B 81.176 170 29 2 97 263 494844817 494844648 1.890000e-27 134.0
37 TraesCS1A01G251300 chr3B 91.304 92 8 0 2604 2695 488190471 488190562 3.170000e-25 126.0
38 TraesCS1A01G251300 chr5A 81.761 159 24 4 37 191 285070238 285070395 8.810000e-26 128.0
39 TraesCS1A01G251300 chr3D 81.818 154 24 3 34 184 488194742 488194894 3.170000e-25 126.0
40 TraesCS1A01G251300 chr3D 91.667 72 6 0 904 975 557745847 557745918 1.920000e-17 100.0
41 TraesCS1A01G251300 chr3D 92.453 53 4 0 905 957 83915401 83915349 3.240000e-10 76.8
42 TraesCS1A01G251300 chr7B 92.941 85 5 1 2604 2688 43549669 43549586 4.100000e-24 122.0
43 TraesCS1A01G251300 chr7B 79.213 178 34 1 97 271 284214099 284213922 1.470000e-23 121.0
44 TraesCS1A01G251300 chr7B 85.714 105 15 0 37 141 187729495 187729391 8.870000e-21 111.0
45 TraesCS1A01G251300 chr7B 78.814 118 25 0 152 269 155537954 155538071 2.500000e-11 80.5
46 TraesCS1A01G251300 chr7A 92.727 55 4 0 905 959 709286425 709286371 2.500000e-11 80.5
47 TraesCS1A01G251300 chr2A 88.679 53 6 0 905 957 467657744 467657692 7.000000e-07 65.8
48 TraesCS1A01G251300 chr3A 94.872 39 2 0 936 974 99298077 99298115 9.060000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G251300 chr1A 442796362 442799388 3026 False 5590.000000 5590 100.000000 1 3027 1 chr1A.!!$F2 3026
1 TraesCS1A01G251300 chr1D 343173971 343176834 2863 False 1267.666667 3208 97.017333 973 3027 3 chr1D.!!$F1 2054
2 TraesCS1A01G251300 chr1B 460267812 460272511 4699 False 745.250000 1443 93.576750 273 2486 4 chr1B.!!$F1 2213

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 910 0.028902 GGCGGGCTTTTAGCGTTATG 59.971 55.000 0.00 0.00 43.62 1.90 F
905 911 0.028902 GCGGGCTTTTAGCGTTATGG 59.971 55.000 0.00 0.00 43.62 2.74 F
907 913 0.384309 GGGCTTTTAGCGTTATGGGC 59.616 55.000 0.00 0.00 43.62 5.36 F
912 918 0.750182 TTTAGCGTTATGGGCCAGGC 60.750 55.000 13.78 12.78 0.00 4.85 F
1856 4094 1.065491 TCGACATGGGGGATCACTTTG 60.065 52.381 0.00 0.00 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 5536 1.000993 TCCCTCTCCAGTCTCCAGC 59.999 63.158 0.0 0.00 0.00 4.85 R
1990 5545 1.152030 AAGCACACCTCCCTCTCCA 60.152 57.895 0.0 0.00 0.00 3.86 R
1991 5546 1.298014 CAAGCACACCTCCCTCTCC 59.702 63.158 0.0 0.00 0.00 3.71 R
1992 5547 1.376553 GCAAGCACACCTCCCTCTC 60.377 63.158 0.0 0.00 0.00 3.20 R
3005 6575 0.179111 GATGGTCGACGCTTCATCCA 60.179 55.000 17.0 5.59 32.27 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.351938 TGTAGCGCGCAAGGACGT 62.352 61.111 35.10 13.45 38.28 4.34
18 19 3.110178 GTAGCGCGCAAGGACGTT 61.110 61.111 35.10 12.60 38.28 3.99
19 20 2.356553 TAGCGCGCAAGGACGTTT 60.357 55.556 35.10 11.76 38.28 3.60
20 21 1.080637 TAGCGCGCAAGGACGTTTA 60.081 52.632 35.10 10.59 38.28 2.01
21 22 1.346378 TAGCGCGCAAGGACGTTTAC 61.346 55.000 35.10 0.00 38.28 2.01
22 23 2.093246 CGCGCAAGGACGTTTACG 59.907 61.111 8.75 0.00 41.54 3.18
23 24 2.472934 GCGCAAGGACGTTTACGG 59.527 61.111 0.30 0.00 40.47 4.02
24 25 2.023223 GCGCAAGGACGTTTACGGA 61.023 57.895 0.30 0.00 40.47 4.69
25 26 1.777199 CGCAAGGACGTTTACGGAC 59.223 57.895 7.24 0.00 44.95 4.79
26 27 0.940519 CGCAAGGACGTTTACGGACA 60.941 55.000 7.24 0.00 44.95 4.02
27 28 1.435577 GCAAGGACGTTTACGGACAT 58.564 50.000 7.24 0.00 44.95 3.06
28 29 1.127951 GCAAGGACGTTTACGGACATG 59.872 52.381 7.24 0.00 44.95 3.21
29 30 1.127951 CAAGGACGTTTACGGACATGC 59.872 52.381 7.24 0.00 44.95 4.06
30 31 0.734942 AGGACGTTTACGGACATGCG 60.735 55.000 7.24 0.00 44.95 4.73
31 32 1.689352 GGACGTTTACGGACATGCGG 61.689 60.000 7.24 0.00 44.95 5.69
32 33 1.689352 GACGTTTACGGACATGCGGG 61.689 60.000 7.24 0.00 44.95 6.13
33 34 2.789249 GTTTACGGACATGCGGGC 59.211 61.111 0.00 0.00 0.00 6.13
34 35 2.437002 TTTACGGACATGCGGGCC 60.437 61.111 0.00 0.00 0.00 5.80
35 36 2.961893 TTTACGGACATGCGGGCCT 61.962 57.895 0.84 0.00 0.00 5.19
36 37 2.862674 TTTACGGACATGCGGGCCTC 62.863 60.000 0.84 0.00 0.00 4.70
42 43 4.864334 CATGCGGGCCTCCACCTC 62.864 72.222 0.84 0.00 0.00 3.85
50 51 3.787001 CCTCCACCTCCCGCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
51 52 4.148825 CTCCACCTCCCGCCTTCG 62.149 72.222 0.00 0.00 0.00 3.79
96 97 3.780624 CCCCGATGGTCAAAGGTAG 57.219 57.895 0.00 0.00 0.00 3.18
97 98 0.180406 CCCCGATGGTCAAAGGTAGG 59.820 60.000 0.00 0.00 0.00 3.18
98 99 0.180406 CCCGATGGTCAAAGGTAGGG 59.820 60.000 0.00 0.00 0.00 3.53
99 100 0.909623 CCGATGGTCAAAGGTAGGGT 59.090 55.000 0.00 0.00 0.00 4.34
100 101 1.406887 CCGATGGTCAAAGGTAGGGTG 60.407 57.143 0.00 0.00 0.00 4.61
101 102 1.406887 CGATGGTCAAAGGTAGGGTGG 60.407 57.143 0.00 0.00 0.00 4.61
102 103 1.633945 GATGGTCAAAGGTAGGGTGGT 59.366 52.381 0.00 0.00 0.00 4.16
103 104 0.768622 TGGTCAAAGGTAGGGTGGTG 59.231 55.000 0.00 0.00 0.00 4.17
104 105 0.037734 GGTCAAAGGTAGGGTGGTGG 59.962 60.000 0.00 0.00 0.00 4.61
105 106 0.608308 GTCAAAGGTAGGGTGGTGGC 60.608 60.000 0.00 0.00 0.00 5.01
106 107 1.304134 CAAAGGTAGGGTGGTGGCC 60.304 63.158 0.00 0.00 0.00 5.36
107 108 1.776710 AAAGGTAGGGTGGTGGCCA 60.777 57.895 0.00 0.00 0.00 5.36
128 129 4.016706 CGGCCACCTCCCGTCTTT 62.017 66.667 2.24 0.00 40.84 2.52
129 130 2.359975 GGCCACCTCCCGTCTTTG 60.360 66.667 0.00 0.00 0.00 2.77
130 131 2.359975 GCCACCTCCCGTCTTTGG 60.360 66.667 0.00 0.00 0.00 3.28
147 148 4.699522 GGCCGCGGTGGAGAAAGT 62.700 66.667 28.70 0.00 42.00 2.66
148 149 3.423154 GCCGCGGTGGAGAAAGTG 61.423 66.667 28.70 0.00 42.00 3.16
149 150 2.030562 CCGCGGTGGAGAAAGTGT 59.969 61.111 19.50 0.00 42.00 3.55
150 151 1.597027 CCGCGGTGGAGAAAGTGTT 60.597 57.895 19.50 0.00 42.00 3.32
151 152 1.569493 CGCGGTGGAGAAAGTGTTG 59.431 57.895 0.00 0.00 0.00 3.33
152 153 1.841663 CGCGGTGGAGAAAGTGTTGG 61.842 60.000 0.00 0.00 0.00 3.77
153 154 1.949257 CGGTGGAGAAAGTGTTGGC 59.051 57.895 0.00 0.00 0.00 4.52
154 155 1.515521 CGGTGGAGAAAGTGTTGGCC 61.516 60.000 0.00 0.00 0.00 5.36
155 156 0.467290 GGTGGAGAAAGTGTTGGCCA 60.467 55.000 0.00 0.00 0.00 5.36
156 157 0.668535 GTGGAGAAAGTGTTGGCCAC 59.331 55.000 3.88 0.75 44.89 5.01
163 164 3.799755 GTGTTGGCCACGGCGATC 61.800 66.667 16.62 1.01 43.06 3.69
166 167 4.155733 TTGGCCACGGCGATCGAT 62.156 61.111 21.57 0.00 43.06 3.59
167 168 4.889856 TGGCCACGGCGATCGATG 62.890 66.667 21.57 12.50 43.06 3.84
169 170 4.891727 GCCACGGCGATCGATGGT 62.892 66.667 25.22 15.00 42.43 3.55
170 171 2.961721 CCACGGCGATCGATGGTG 60.962 66.667 21.57 20.58 42.43 4.17
171 172 2.961721 CACGGCGATCGATGGTGG 60.962 66.667 21.57 0.12 42.43 4.61
172 173 4.221422 ACGGCGATCGATGGTGGG 62.221 66.667 21.57 1.22 42.43 4.61
173 174 4.969196 CGGCGATCGATGGTGGGG 62.969 72.222 21.57 0.00 42.43 4.96
174 175 3.861797 GGCGATCGATGGTGGGGT 61.862 66.667 21.57 0.00 0.00 4.95
175 176 2.588877 GCGATCGATGGTGGGGTG 60.589 66.667 21.57 0.00 0.00 4.61
176 177 2.108976 CGATCGATGGTGGGGTGG 59.891 66.667 10.26 0.00 0.00 4.61
177 178 2.203209 GATCGATGGTGGGGTGGC 60.203 66.667 0.54 0.00 0.00 5.01
178 179 4.175337 ATCGATGGTGGGGTGGCG 62.175 66.667 0.00 0.00 0.00 5.69
181 182 4.796495 GATGGTGGGGTGGCGGTC 62.796 72.222 0.00 0.00 0.00 4.79
185 186 3.948719 GTGGGGTGGCGGTCAAGA 61.949 66.667 0.00 0.00 0.00 3.02
186 187 2.933287 TGGGGTGGCGGTCAAGAT 60.933 61.111 0.00 0.00 0.00 2.40
187 188 2.438434 GGGGTGGCGGTCAAGATG 60.438 66.667 0.00 0.00 0.00 2.90
188 189 2.438434 GGGTGGCGGTCAAGATGG 60.438 66.667 0.00 0.00 0.00 3.51
189 190 3.134127 GGTGGCGGTCAAGATGGC 61.134 66.667 0.00 0.00 0.00 4.40
190 191 3.134127 GTGGCGGTCAAGATGGCC 61.134 66.667 0.00 0.00 45.76 5.36
192 193 3.134127 GGCGGTCAAGATGGCCAC 61.134 66.667 8.16 1.58 43.88 5.01
193 194 3.134127 GCGGTCAAGATGGCCACC 61.134 66.667 8.16 0.00 43.88 4.61
194 195 2.671070 CGGTCAAGATGGCCACCT 59.329 61.111 8.16 0.00 43.88 4.00
195 196 1.450312 CGGTCAAGATGGCCACCTC 60.450 63.158 8.16 1.78 43.88 3.85
196 197 1.077429 GGTCAAGATGGCCACCTCC 60.077 63.158 8.16 0.00 42.98 4.30
197 198 1.077429 GTCAAGATGGCCACCTCCC 60.077 63.158 8.16 0.00 0.00 4.30
198 199 2.124570 CAAGATGGCCACCTCCCG 60.125 66.667 8.16 0.00 0.00 5.14
199 200 4.115199 AAGATGGCCACCTCCCGC 62.115 66.667 8.16 0.00 0.00 6.13
206 207 4.148825 CCACCTCCCGCCTTCGAG 62.149 72.222 0.00 0.00 38.10 4.04
207 208 4.821589 CACCTCCCGCCTTCGAGC 62.822 72.222 0.00 0.00 38.10 5.03
225 226 3.760035 CGCGGTGGTGGAGTAGCT 61.760 66.667 0.00 0.00 0.00 3.32
226 227 2.125512 GCGGTGGTGGAGTAGCTG 60.126 66.667 0.00 0.00 0.00 4.24
227 228 2.646175 GCGGTGGTGGAGTAGCTGA 61.646 63.158 0.00 0.00 0.00 4.26
228 229 1.961180 GCGGTGGTGGAGTAGCTGAT 61.961 60.000 0.00 0.00 0.00 2.90
229 230 0.179100 CGGTGGTGGAGTAGCTGATG 60.179 60.000 0.00 0.00 0.00 3.07
230 231 0.179000 GGTGGTGGAGTAGCTGATGG 59.821 60.000 0.00 0.00 0.00 3.51
231 232 0.462759 GTGGTGGAGTAGCTGATGGC 60.463 60.000 0.00 0.00 42.19 4.40
232 233 1.147153 GGTGGAGTAGCTGATGGCC 59.853 63.158 0.00 0.00 43.05 5.36
233 234 1.147153 GTGGAGTAGCTGATGGCCC 59.853 63.158 0.00 0.00 43.05 5.80
234 235 1.003442 TGGAGTAGCTGATGGCCCT 59.997 57.895 0.00 0.00 43.05 5.19
235 236 1.340399 TGGAGTAGCTGATGGCCCTG 61.340 60.000 0.00 0.00 43.05 4.45
236 237 1.449353 GAGTAGCTGATGGCCCTGG 59.551 63.158 0.00 0.00 43.05 4.45
237 238 2.203266 GTAGCTGATGGCCCTGGC 60.203 66.667 0.00 0.00 43.05 4.85
238 239 3.865383 TAGCTGATGGCCCTGGCG 61.865 66.667 0.00 0.00 43.05 5.69
315 316 2.413634 GGCGGTGATTTTTCCTGTAACG 60.414 50.000 0.00 0.00 0.00 3.18
340 341 7.141758 AGTGATTGATTTTGCTAGGGATCTA 57.858 36.000 0.00 0.00 0.00 1.98
344 345 8.000709 TGATTGATTTTGCTAGGGATCTACAAT 58.999 33.333 0.00 0.00 0.00 2.71
346 347 6.899089 TGATTTTGCTAGGGATCTACAATGA 58.101 36.000 0.00 0.00 0.00 2.57
348 349 7.446319 TGATTTTGCTAGGGATCTACAATGATG 59.554 37.037 0.00 0.00 0.00 3.07
357 358 5.422012 GGGATCTACAATGATGGTGGTTTTT 59.578 40.000 0.00 0.00 0.00 1.94
370 371 2.283884 GTGGTTTTTGTTGTGATTGGCG 59.716 45.455 0.00 0.00 0.00 5.69
372 373 3.181471 TGGTTTTTGTTGTGATTGGCGAT 60.181 39.130 0.00 0.00 0.00 4.58
384 385 0.108709 TTGGCGATGGATTTTGCTGC 60.109 50.000 0.00 0.00 0.00 5.25
388 389 0.248215 CGATGGATTTTGCTGCGACC 60.248 55.000 0.00 0.00 0.00 4.79
429 430 5.286797 CGAACAACGATGATTTTGATGCAAT 59.713 36.000 0.00 0.00 45.77 3.56
458 459 1.961277 CCCTGAGCCACGACACAAC 60.961 63.158 0.00 0.00 0.00 3.32
460 461 0.813610 CCTGAGCCACGACACAACAA 60.814 55.000 0.00 0.00 0.00 2.83
482 483 4.320870 AGGGATGTTGTAACCTTGTTACG 58.679 43.478 11.31 0.00 0.00 3.18
484 485 4.939439 GGGATGTTGTAACCTTGTTACGAT 59.061 41.667 9.60 3.97 0.00 3.73
487 488 6.183360 GGATGTTGTAACCTTGTTACGATGAG 60.183 42.308 9.60 0.00 0.00 2.90
493 494 7.208777 TGTAACCTTGTTACGATGAGTTACAA 58.791 34.615 14.98 3.44 46.21 2.41
495 496 6.963049 ACCTTGTTACGATGAGTTACAATC 57.037 37.500 3.82 0.00 46.83 2.67
541 542 1.882989 GAGGCGTGCTCTCTCCTTGT 61.883 60.000 0.00 0.00 0.00 3.16
544 545 2.091112 CGTGCTCTCTCCTTGTGCG 61.091 63.158 0.00 0.00 0.00 5.34
561 562 2.645192 CGGGGTGTGATTTTGGGGC 61.645 63.158 0.00 0.00 0.00 5.80
568 569 3.008485 GGTGTGATTTTGGGGCCAAATAA 59.992 43.478 4.39 0.00 44.14 1.40
596 597 5.055812 GCAATGTGAGGGAAAATTTTGACA 58.944 37.500 8.47 3.86 0.00 3.58
601 602 5.049828 GTGAGGGAAAATTTTGACAGTTGG 58.950 41.667 8.47 0.00 0.00 3.77
609 610 3.768468 TTTTGACAGTTGGGAAACGAC 57.232 42.857 0.00 0.00 0.00 4.34
619 620 0.589223 GGGAAACGACGCAATTGACA 59.411 50.000 10.34 0.00 0.00 3.58
622 623 2.298300 GAAACGACGCAATTGACACAG 58.702 47.619 10.34 0.00 0.00 3.66
674 675 1.522569 GACCGAAGCCTAGCACCAT 59.477 57.895 0.00 0.00 0.00 3.55
689 695 1.852965 CACCATCCTTTCAGGGGGTAT 59.147 52.381 6.71 0.00 40.08 2.73
695 701 0.846693 CTTTCAGGGGGTATGAGGGG 59.153 60.000 0.00 0.00 0.00 4.79
701 707 1.203701 AGGGGGTATGAGGGGTTTTCT 60.204 52.381 0.00 0.00 0.00 2.52
709 715 2.701551 TGAGGGGTTTTCTCTCTTCCA 58.298 47.619 0.00 0.00 32.78 3.53
712 718 4.106341 TGAGGGGTTTTCTCTCTTCCATTT 59.894 41.667 0.00 0.00 32.78 2.32
713 719 5.312178 TGAGGGGTTTTCTCTCTTCCATTTA 59.688 40.000 0.00 0.00 32.78 1.40
714 720 5.821097 AGGGGTTTTCTCTCTTCCATTTAG 58.179 41.667 0.00 0.00 0.00 1.85
715 721 5.313506 AGGGGTTTTCTCTCTTCCATTTAGT 59.686 40.000 0.00 0.00 0.00 2.24
716 722 6.010850 GGGGTTTTCTCTCTTCCATTTAGTT 58.989 40.000 0.00 0.00 0.00 2.24
717 723 6.151312 GGGGTTTTCTCTCTTCCATTTAGTTC 59.849 42.308 0.00 0.00 0.00 3.01
718 724 6.715264 GGGTTTTCTCTCTTCCATTTAGTTCA 59.285 38.462 0.00 0.00 0.00 3.18
719 725 7.230712 GGGTTTTCTCTCTTCCATTTAGTTCAA 59.769 37.037 0.00 0.00 0.00 2.69
720 726 8.630037 GGTTTTCTCTCTTCCATTTAGTTCAAA 58.370 33.333 0.00 0.00 0.00 2.69
731 737 8.232913 TCCATTTAGTTCAAATTATACCTGGC 57.767 34.615 0.00 0.00 34.49 4.85
732 738 7.286775 TCCATTTAGTTCAAATTATACCTGGCC 59.713 37.037 0.00 0.00 34.49 5.36
733 739 7.069331 CCATTTAGTTCAAATTATACCTGGCCA 59.931 37.037 4.71 4.71 34.49 5.36
734 740 8.641541 CATTTAGTTCAAATTATACCTGGCCAT 58.358 33.333 5.51 0.00 34.49 4.40
735 741 7.581213 TTAGTTCAAATTATACCTGGCCATG 57.419 36.000 5.51 6.06 0.00 3.66
736 742 4.895297 AGTTCAAATTATACCTGGCCATGG 59.105 41.667 5.51 13.05 0.00 3.66
737 743 3.843422 TCAAATTATACCTGGCCATGGG 58.157 45.455 20.97 16.10 0.00 4.00
772 778 3.507009 CTCGACCCGACCCGACTC 61.507 72.222 0.00 0.00 0.00 3.36
775 781 3.808656 GACCCGACCCGACTCGAC 61.809 72.222 0.00 0.00 35.58 4.20
778 784 3.060615 CCGACCCGACTCGACCTT 61.061 66.667 0.00 0.00 35.58 3.50
779 785 2.178521 CGACCCGACTCGACCTTG 59.821 66.667 0.00 0.00 35.58 3.61
780 786 2.623915 CGACCCGACTCGACCTTGT 61.624 63.158 0.00 0.00 35.58 3.16
781 787 1.212229 GACCCGACTCGACCTTGTC 59.788 63.158 0.00 0.00 0.00 3.18
782 788 2.210341 GACCCGACTCGACCTTGTCC 62.210 65.000 0.00 0.00 0.00 4.02
783 789 2.273179 CCCGACTCGACCTTGTCCA 61.273 63.158 0.00 0.00 0.00 4.02
784 790 1.080705 CCGACTCGACCTTGTCCAC 60.081 63.158 0.00 0.00 0.00 4.02
785 791 1.442184 CGACTCGACCTTGTCCACG 60.442 63.158 0.00 0.00 0.00 4.94
786 792 1.080705 GACTCGACCTTGTCCACGG 60.081 63.158 0.00 0.00 0.00 4.94
787 793 2.261671 CTCGACCTTGTCCACGGG 59.738 66.667 0.00 0.00 0.00 5.28
788 794 2.522436 TCGACCTTGTCCACGGGT 60.522 61.111 0.00 0.00 35.89 5.28
789 795 2.048503 CGACCTTGTCCACGGGTC 60.049 66.667 10.09 10.09 44.16 4.46
790 796 2.048503 GACCTTGTCCACGGGTCG 60.049 66.667 6.09 0.00 39.80 4.79
791 797 3.584868 GACCTTGTCCACGGGTCGG 62.585 68.421 6.09 0.00 39.80 4.79
792 798 4.388499 CCTTGTCCACGGGTCGGG 62.388 72.222 0.00 0.00 0.00 5.14
796 802 3.384532 GTCCACGGGTCGGGCTTA 61.385 66.667 0.00 0.00 0.00 3.09
797 803 2.604079 TCCACGGGTCGGGCTTAA 60.604 61.111 0.00 0.00 0.00 1.85
798 804 2.125269 CCACGGGTCGGGCTTAAG 60.125 66.667 0.00 0.00 0.00 1.85
799 805 2.818274 CACGGGTCGGGCTTAAGC 60.818 66.667 19.53 19.53 41.14 3.09
813 819 4.560136 GCTTAAGCCTAGATTTCAAGCC 57.440 45.455 17.00 0.00 32.69 4.35
814 820 3.316588 GCTTAAGCCTAGATTTCAAGCCC 59.683 47.826 17.00 0.00 32.69 5.19
815 821 2.044123 AAGCCTAGATTTCAAGCCCG 57.956 50.000 0.00 0.00 0.00 6.13
816 822 1.204146 AGCCTAGATTTCAAGCCCGA 58.796 50.000 0.00 0.00 0.00 5.14
817 823 1.134371 AGCCTAGATTTCAAGCCCGAC 60.134 52.381 0.00 0.00 0.00 4.79
818 824 1.571919 CCTAGATTTCAAGCCCGACG 58.428 55.000 0.00 0.00 0.00 5.12
819 825 1.571919 CTAGATTTCAAGCCCGACGG 58.428 55.000 6.99 6.99 0.00 4.79
854 860 3.292602 CGAACCCGTCGTATTCGC 58.707 61.111 13.13 0.00 45.09 4.70
855 861 2.561894 CGAACCCGTCGTATTCGCG 61.562 63.158 13.13 0.00 45.09 5.87
856 862 2.853150 GAACCCGTCGTATTCGCGC 61.853 63.158 0.00 0.00 36.14 6.86
857 863 3.629883 AACCCGTCGTATTCGCGCA 62.630 57.895 8.75 0.00 36.14 6.09
858 864 2.657296 CCCGTCGTATTCGCGCAT 60.657 61.111 8.75 0.00 36.14 4.73
859 865 2.235016 CCCGTCGTATTCGCGCATT 61.235 57.895 8.75 0.00 36.14 3.56
860 866 0.935831 CCCGTCGTATTCGCGCATTA 60.936 55.000 8.75 0.00 36.14 1.90
861 867 0.847670 CCGTCGTATTCGCGCATTAA 59.152 50.000 8.75 0.00 36.14 1.40
862 868 1.454276 CCGTCGTATTCGCGCATTAAT 59.546 47.619 8.75 6.53 36.14 1.40
863 869 2.472583 CGTCGTATTCGCGCATTAATG 58.527 47.619 8.75 11.27 36.96 1.90
864 870 2.152301 CGTCGTATTCGCGCATTAATGA 59.848 45.455 19.73 0.00 36.96 2.57
865 871 3.361243 CGTCGTATTCGCGCATTAATGAA 60.361 43.478 19.73 4.76 36.96 2.57
866 872 4.134546 GTCGTATTCGCGCATTAATGAAG 58.865 43.478 19.73 12.50 36.96 3.02
867 873 4.045783 TCGTATTCGCGCATTAATGAAGA 58.954 39.130 19.73 11.04 36.96 2.87
868 874 4.148174 TCGTATTCGCGCATTAATGAAGAG 59.852 41.667 19.73 12.99 36.96 2.85
869 875 3.885484 ATTCGCGCATTAATGAAGAGG 57.115 42.857 19.73 7.77 0.00 3.69
870 876 0.937304 TCGCGCATTAATGAAGAGGC 59.063 50.000 19.73 11.54 0.00 4.70
871 877 0.040958 CGCGCATTAATGAAGAGGCC 60.041 55.000 19.73 0.00 0.00 5.19
872 878 0.312102 GCGCATTAATGAAGAGGCCC 59.688 55.000 19.73 0.00 0.00 5.80
873 879 0.588252 CGCATTAATGAAGAGGCCCG 59.412 55.000 19.73 6.55 0.00 6.13
874 880 1.810031 CGCATTAATGAAGAGGCCCGA 60.810 52.381 19.73 0.00 0.00 5.14
875 881 1.604278 GCATTAATGAAGAGGCCCGAC 59.396 52.381 19.73 0.00 0.00 4.79
876 882 2.222027 CATTAATGAAGAGGCCCGACC 58.778 52.381 10.04 0.00 39.61 4.79
877 883 0.544697 TTAATGAAGAGGCCCGACCC 59.455 55.000 0.00 0.00 40.58 4.46
878 884 1.682451 TAATGAAGAGGCCCGACCCG 61.682 60.000 0.00 0.00 40.58 5.28
879 885 3.976490 ATGAAGAGGCCCGACCCGA 62.976 63.158 0.00 0.00 40.58 5.14
880 886 3.839432 GAAGAGGCCCGACCCGAG 61.839 72.222 0.00 0.00 40.58 4.63
896 902 4.338710 AGGCACGGCGGGCTTTTA 62.339 61.111 34.65 0.00 41.46 1.52
897 903 3.810896 GGCACGGCGGGCTTTTAG 61.811 66.667 34.65 2.36 0.00 1.85
898 904 4.476410 GCACGGCGGGCTTTTAGC 62.476 66.667 29.44 5.50 41.46 3.09
899 905 4.160635 CACGGCGGGCTTTTAGCG 62.161 66.667 13.24 0.00 43.62 4.26
900 906 4.692475 ACGGCGGGCTTTTAGCGT 62.692 61.111 13.24 0.00 43.62 5.07
901 907 3.428282 CGGCGGGCTTTTAGCGTT 61.428 61.111 0.00 0.00 43.62 4.84
902 908 2.101835 CGGCGGGCTTTTAGCGTTA 61.102 57.895 0.00 0.00 43.62 3.18
903 909 1.433837 CGGCGGGCTTTTAGCGTTAT 61.434 55.000 0.00 0.00 43.62 1.89
904 910 0.028902 GGCGGGCTTTTAGCGTTATG 59.971 55.000 0.00 0.00 43.62 1.90
905 911 0.028902 GCGGGCTTTTAGCGTTATGG 59.971 55.000 0.00 0.00 43.62 2.74
906 912 0.661020 CGGGCTTTTAGCGTTATGGG 59.339 55.000 0.00 0.00 43.62 4.00
907 913 0.384309 GGGCTTTTAGCGTTATGGGC 59.616 55.000 0.00 0.00 43.62 5.36
908 914 0.384309 GGCTTTTAGCGTTATGGGCC 59.616 55.000 0.00 0.00 43.62 5.80
909 915 1.099689 GCTTTTAGCGTTATGGGCCA 58.900 50.000 9.61 9.61 0.00 5.36
910 916 1.065551 GCTTTTAGCGTTATGGGCCAG 59.934 52.381 13.78 0.00 0.00 4.85
911 917 1.676006 CTTTTAGCGTTATGGGCCAGG 59.324 52.381 13.78 2.06 0.00 4.45
912 918 0.750182 TTTAGCGTTATGGGCCAGGC 60.750 55.000 13.78 12.78 0.00 4.85
913 919 1.632018 TTAGCGTTATGGGCCAGGCT 61.632 55.000 22.19 22.19 34.69 4.58
914 920 2.040009 TAGCGTTATGGGCCAGGCTC 62.040 60.000 22.19 8.27 32.29 4.70
915 921 2.588877 CGTTATGGGCCAGGCTCG 60.589 66.667 13.78 10.40 0.00 5.03
916 922 2.203209 GTTATGGGCCAGGCTCGG 60.203 66.667 13.78 0.00 0.00 4.63
917 923 3.488569 TTATGGGCCAGGCTCGGG 61.489 66.667 13.78 0.00 0.00 5.14
928 934 2.600470 GCTCGGGCCTGGGTTTTT 60.600 61.111 14.54 0.00 0.00 1.94
944 950 2.725221 TTTTTGCATTGGGCTTTGGT 57.275 40.000 0.00 0.00 45.15 3.67
945 951 3.845781 TTTTTGCATTGGGCTTTGGTA 57.154 38.095 0.00 0.00 45.15 3.25
946 952 3.399440 TTTTGCATTGGGCTTTGGTAG 57.601 42.857 0.00 0.00 45.15 3.18
947 953 1.265236 TTGCATTGGGCTTTGGTAGG 58.735 50.000 0.00 0.00 45.15 3.18
1257 2709 2.526110 GCCCAGTCCCAAAACCCT 59.474 61.111 0.00 0.00 0.00 4.34
1777 4015 3.760035 ATCCGCGACGAAGGTGCT 61.760 61.111 8.23 0.00 0.00 4.40
1801 4039 2.289945 GCTCACATTTGACCCTGAGACT 60.290 50.000 0.00 0.00 33.30 3.24
1856 4094 1.065491 TCGACATGGGGGATCACTTTG 60.065 52.381 0.00 0.00 0.00 2.77
1981 5536 2.978010 GGCCAGAACGTGTGGGTG 60.978 66.667 16.84 0.00 35.39 4.61
1989 5544 2.357517 CGTGTGGGTGCTGGAGAC 60.358 66.667 0.00 0.00 0.00 3.36
1990 5545 2.872388 CGTGTGGGTGCTGGAGACT 61.872 63.158 0.00 0.00 0.00 3.24
1991 5546 1.302033 GTGTGGGTGCTGGAGACTG 60.302 63.158 0.00 0.00 0.00 3.51
1992 5547 2.348998 GTGGGTGCTGGAGACTGG 59.651 66.667 0.00 0.00 0.00 4.00
1993 5548 2.204034 TGGGTGCTGGAGACTGGA 59.796 61.111 0.00 0.00 0.00 3.86
1994 5549 1.915266 TGGGTGCTGGAGACTGGAG 60.915 63.158 0.00 0.00 0.00 3.86
1995 5550 1.610673 GGGTGCTGGAGACTGGAGA 60.611 63.158 0.00 0.00 0.00 3.71
2000 5555 1.042559 GCTGGAGACTGGAGAGGGAG 61.043 65.000 0.00 0.00 0.00 4.30
2024 5579 1.448540 CTTGCTCCAGGCGTTCGAT 60.449 57.895 0.00 0.00 45.43 3.59
2061 5616 2.125673 CGAGTTTCATCGCCCGGT 60.126 61.111 0.00 0.00 35.66 5.28
2158 5713 3.065510 CACTACTCGTACCATCTGGACAG 59.934 52.174 2.55 0.00 38.94 3.51
2240 5795 2.687566 TTCTCCTTCCCGGGCTCC 60.688 66.667 18.49 0.00 0.00 4.70
2495 6052 4.427312 CGTGTTCTCTGATGATCATGTCA 58.573 43.478 14.30 5.84 42.06 3.58
2522 6079 2.300437 ACTGAAGCTTGGGTGTCTACTC 59.700 50.000 2.10 0.00 0.00 2.59
2597 6159 7.915923 GGAGAAATATAGCATGCATCATTGATG 59.084 37.037 21.98 20.14 42.37 3.07
2606 6168 7.892609 AGCATGCATCATTGATGTACAATATT 58.107 30.769 23.86 4.80 46.01 1.28
2608 6170 9.797556 GCATGCATCATTGATGTACAATATTAT 57.202 29.630 23.86 3.52 46.01 1.28
2678 6247 6.824704 CCCCCAACGACTTATATTTAAGAACA 59.175 38.462 9.58 0.00 38.56 3.18
2908 6477 4.393062 GTCATCGAGGTTGATCAACAATGT 59.607 41.667 33.42 18.27 42.85 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.851845 AACGTCCTTGCGCGCTACA 62.852 57.895 33.29 15.19 34.88 2.74
1 2 1.346378 TAAACGTCCTTGCGCGCTAC 61.346 55.000 33.29 21.91 34.88 3.58
2 3 1.080637 TAAACGTCCTTGCGCGCTA 60.081 52.632 33.29 24.65 34.88 4.26
3 4 2.356553 TAAACGTCCTTGCGCGCT 60.357 55.556 33.29 11.06 34.88 5.92
4 5 2.202133 GTAAACGTCCTTGCGCGC 60.202 61.111 27.26 27.26 34.88 6.86
5 6 2.093246 CGTAAACGTCCTTGCGCG 59.907 61.111 0.00 0.00 34.88 6.86
6 7 2.023223 TCCGTAAACGTCCTTGCGC 61.023 57.895 0.00 0.00 37.74 6.09
7 8 0.940519 TGTCCGTAAACGTCCTTGCG 60.941 55.000 3.82 3.82 37.74 4.85
8 9 1.127951 CATGTCCGTAAACGTCCTTGC 59.872 52.381 1.41 0.00 37.74 4.01
9 10 1.127951 GCATGTCCGTAAACGTCCTTG 59.872 52.381 1.41 1.97 37.74 3.61
10 11 1.435577 GCATGTCCGTAAACGTCCTT 58.564 50.000 1.41 0.00 37.74 3.36
11 12 0.734942 CGCATGTCCGTAAACGTCCT 60.735 55.000 1.41 0.00 37.74 3.85
12 13 1.689352 CCGCATGTCCGTAAACGTCC 61.689 60.000 1.41 0.00 37.74 4.79
13 14 1.689352 CCCGCATGTCCGTAAACGTC 61.689 60.000 1.41 0.00 37.74 4.34
14 15 1.738830 CCCGCATGTCCGTAAACGT 60.739 57.895 1.41 0.00 37.74 3.99
15 16 3.086309 CCCGCATGTCCGTAAACG 58.914 61.111 0.00 0.00 39.44 3.60
16 17 2.757056 GGCCCGCATGTCCGTAAAC 61.757 63.158 0.00 0.00 0.00 2.01
17 18 2.437002 GGCCCGCATGTCCGTAAA 60.437 61.111 0.00 0.00 0.00 2.01
18 19 3.379865 GAGGCCCGCATGTCCGTAA 62.380 63.158 0.00 0.00 0.00 3.18
19 20 3.845259 GAGGCCCGCATGTCCGTA 61.845 66.667 0.00 0.00 0.00 4.02
25 26 4.864334 GAGGTGGAGGCCCGCATG 62.864 72.222 0.00 0.00 44.70 4.06
33 34 3.787001 GAAGGCGGGAGGTGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
34 35 4.148825 CGAAGGCGGGAGGTGGAG 62.149 72.222 0.00 0.00 0.00 3.86
58 59 4.778143 ATCACCCGCTTCGCCACC 62.778 66.667 0.00 0.00 0.00 4.61
59 60 3.499737 CATCACCCGCTTCGCCAC 61.500 66.667 0.00 0.00 0.00 5.01
60 61 3.700970 TCATCACCCGCTTCGCCA 61.701 61.111 0.00 0.00 0.00 5.69
61 62 3.195698 GTCATCACCCGCTTCGCC 61.196 66.667 0.00 0.00 0.00 5.54
62 63 3.195698 GGTCATCACCCGCTTCGC 61.196 66.667 0.00 0.00 36.54 4.70
78 79 0.180406 CCTACCTTTGACCATCGGGG 59.820 60.000 0.00 0.00 44.81 5.73
79 80 0.180406 CCCTACCTTTGACCATCGGG 59.820 60.000 0.00 0.00 41.29 5.14
80 81 0.909623 ACCCTACCTTTGACCATCGG 59.090 55.000 0.00 0.00 0.00 4.18
81 82 1.406887 CCACCCTACCTTTGACCATCG 60.407 57.143 0.00 0.00 0.00 3.84
82 83 1.633945 ACCACCCTACCTTTGACCATC 59.366 52.381 0.00 0.00 0.00 3.51
83 84 1.354368 CACCACCCTACCTTTGACCAT 59.646 52.381 0.00 0.00 0.00 3.55
84 85 0.768622 CACCACCCTACCTTTGACCA 59.231 55.000 0.00 0.00 0.00 4.02
85 86 0.037734 CCACCACCCTACCTTTGACC 59.962 60.000 0.00 0.00 0.00 4.02
86 87 0.608308 GCCACCACCCTACCTTTGAC 60.608 60.000 0.00 0.00 0.00 3.18
87 88 1.765074 GCCACCACCCTACCTTTGA 59.235 57.895 0.00 0.00 0.00 2.69
88 89 1.304134 GGCCACCACCCTACCTTTG 60.304 63.158 0.00 0.00 0.00 2.77
89 90 1.776710 TGGCCACCACCCTACCTTT 60.777 57.895 0.00 0.00 0.00 3.11
90 91 2.121689 TGGCCACCACCCTACCTT 60.122 61.111 0.00 0.00 0.00 3.50
111 112 4.016706 AAAGACGGGAGGTGGCCG 62.017 66.667 0.00 0.00 0.00 6.13
112 113 2.359975 CAAAGACGGGAGGTGGCC 60.360 66.667 0.00 0.00 0.00 5.36
113 114 2.359975 CCAAAGACGGGAGGTGGC 60.360 66.667 0.00 0.00 0.00 5.01
130 131 4.699522 ACTTTCTCCACCGCGGCC 62.700 66.667 28.58 0.00 33.14 6.13
131 132 3.423154 CACTTTCTCCACCGCGGC 61.423 66.667 28.58 0.00 33.14 6.53
132 133 1.597027 AACACTTTCTCCACCGCGG 60.597 57.895 26.86 26.86 0.00 6.46
133 134 1.569493 CAACACTTTCTCCACCGCG 59.431 57.895 0.00 0.00 0.00 6.46
134 135 1.949257 CCAACACTTTCTCCACCGC 59.051 57.895 0.00 0.00 0.00 5.68
135 136 1.515521 GGCCAACACTTTCTCCACCG 61.516 60.000 0.00 0.00 0.00 4.94
136 137 0.467290 TGGCCAACACTTTCTCCACC 60.467 55.000 0.61 0.00 0.00 4.61
137 138 0.668535 GTGGCCAACACTTTCTCCAC 59.331 55.000 7.24 0.00 46.72 4.02
138 139 3.109847 GTGGCCAACACTTTCTCCA 57.890 52.632 7.24 0.00 46.72 3.86
146 147 3.799755 GATCGCCGTGGCCAACAC 61.800 66.667 7.24 0.00 46.78 3.32
149 150 4.155733 ATCGATCGCCGTGGCCAA 62.156 61.111 7.24 0.00 39.75 4.52
150 151 4.889856 CATCGATCGCCGTGGCCA 62.890 66.667 11.09 0.00 39.75 5.36
152 153 4.891727 ACCATCGATCGCCGTGGC 62.892 66.667 24.48 0.00 40.58 5.01
153 154 2.961721 CACCATCGATCGCCGTGG 60.962 66.667 23.53 23.53 41.73 4.94
154 155 2.961721 CCACCATCGATCGCCGTG 60.962 66.667 11.09 14.95 39.75 4.94
155 156 4.221422 CCCACCATCGATCGCCGT 62.221 66.667 11.09 2.84 39.75 5.68
156 157 4.969196 CCCCACCATCGATCGCCG 62.969 72.222 11.09 3.23 40.25 6.46
157 158 3.861797 ACCCCACCATCGATCGCC 61.862 66.667 11.09 0.00 0.00 5.54
158 159 2.588877 CACCCCACCATCGATCGC 60.589 66.667 11.09 0.00 0.00 4.58
159 160 2.108976 CCACCCCACCATCGATCG 59.891 66.667 9.36 9.36 0.00 3.69
160 161 2.203209 GCCACCCCACCATCGATC 60.203 66.667 0.00 0.00 0.00 3.69
161 162 4.175337 CGCCACCCCACCATCGAT 62.175 66.667 0.00 0.00 0.00 3.59
164 165 4.796495 GACCGCCACCCCACCATC 62.796 72.222 0.00 0.00 0.00 3.51
168 169 3.268103 ATCTTGACCGCCACCCCAC 62.268 63.158 0.00 0.00 0.00 4.61
169 170 2.933287 ATCTTGACCGCCACCCCA 60.933 61.111 0.00 0.00 0.00 4.96
170 171 2.438434 CATCTTGACCGCCACCCC 60.438 66.667 0.00 0.00 0.00 4.95
171 172 2.438434 CCATCTTGACCGCCACCC 60.438 66.667 0.00 0.00 0.00 4.61
172 173 3.134127 GCCATCTTGACCGCCACC 61.134 66.667 0.00 0.00 0.00 4.61
173 174 3.134127 GGCCATCTTGACCGCCAC 61.134 66.667 0.00 0.00 41.25 5.01
175 176 3.134127 GTGGCCATCTTGACCGCC 61.134 66.667 9.72 0.00 41.99 6.13
176 177 3.134127 GGTGGCCATCTTGACCGC 61.134 66.667 9.72 0.00 0.00 5.68
177 178 1.450312 GAGGTGGCCATCTTGACCG 60.450 63.158 22.29 0.00 33.39 4.79
178 179 1.077429 GGAGGTGGCCATCTTGACC 60.077 63.158 22.29 13.62 0.00 4.02
179 180 1.077429 GGGAGGTGGCCATCTTGAC 60.077 63.158 22.29 13.61 0.00 3.18
180 181 2.669133 CGGGAGGTGGCCATCTTGA 61.669 63.158 22.29 0.00 0.00 3.02
181 182 2.124570 CGGGAGGTGGCCATCTTG 60.125 66.667 22.29 9.78 0.00 3.02
182 183 4.115199 GCGGGAGGTGGCCATCTT 62.115 66.667 22.29 3.41 0.00 2.40
189 190 4.148825 CTCGAAGGCGGGAGGTGG 62.149 72.222 0.00 0.00 41.67 4.61
190 191 4.821589 GCTCGAAGGCGGGAGGTG 62.822 72.222 0.00 0.00 41.67 4.00
206 207 4.814294 CTACTCCACCACCGCGGC 62.814 72.222 28.58 0.00 39.03 6.53
207 208 4.814294 GCTACTCCACCACCGCGG 62.814 72.222 26.86 26.86 42.50 6.46
208 209 3.760035 AGCTACTCCACCACCGCG 61.760 66.667 0.00 0.00 0.00 6.46
209 210 1.961180 ATCAGCTACTCCACCACCGC 61.961 60.000 0.00 0.00 0.00 5.68
210 211 0.179100 CATCAGCTACTCCACCACCG 60.179 60.000 0.00 0.00 0.00 4.94
211 212 0.179000 CCATCAGCTACTCCACCACC 59.821 60.000 0.00 0.00 0.00 4.61
212 213 0.462759 GCCATCAGCTACTCCACCAC 60.463 60.000 0.00 0.00 38.99 4.16
213 214 1.626356 GGCCATCAGCTACTCCACCA 61.626 60.000 0.00 0.00 43.05 4.17
214 215 1.147153 GGCCATCAGCTACTCCACC 59.853 63.158 0.00 0.00 43.05 4.61
215 216 1.147153 GGGCCATCAGCTACTCCAC 59.853 63.158 4.39 0.00 43.05 4.02
216 217 1.003442 AGGGCCATCAGCTACTCCA 59.997 57.895 6.18 0.00 43.05 3.86
217 218 1.449353 CAGGGCCATCAGCTACTCC 59.551 63.158 6.18 0.00 43.05 3.85
218 219 1.449353 CCAGGGCCATCAGCTACTC 59.551 63.158 6.18 0.00 43.05 2.59
219 220 2.750657 GCCAGGGCCATCAGCTACT 61.751 63.158 6.18 0.00 43.05 2.57
220 221 2.203266 GCCAGGGCCATCAGCTAC 60.203 66.667 6.18 0.00 43.05 3.58
221 222 3.865383 CGCCAGGGCCATCAGCTA 61.865 66.667 6.18 0.00 43.05 3.32
258 259 4.415332 CACCTCCGGTCGTCGTGG 62.415 72.222 0.00 0.00 37.11 4.94
259 260 4.415332 CCACCTCCGGTCGTCGTG 62.415 72.222 0.00 1.80 37.11 4.35
262 263 1.454479 TATCCCACCTCCGGTCGTC 60.454 63.158 0.00 0.00 31.02 4.20
263 264 1.755783 GTATCCCACCTCCGGTCGT 60.756 63.158 0.00 0.00 31.02 4.34
264 265 1.041447 AAGTATCCCACCTCCGGTCG 61.041 60.000 0.00 0.00 31.02 4.79
265 266 0.464452 CAAGTATCCCACCTCCGGTC 59.536 60.000 0.00 0.00 31.02 4.79
266 267 0.981277 CCAAGTATCCCACCTCCGGT 60.981 60.000 0.00 0.00 35.62 5.28
267 268 1.830145 CCAAGTATCCCACCTCCGG 59.170 63.158 0.00 0.00 0.00 5.14
268 269 1.146263 GCCAAGTATCCCACCTCCG 59.854 63.158 0.00 0.00 0.00 4.63
269 270 0.181350 CAGCCAAGTATCCCACCTCC 59.819 60.000 0.00 0.00 0.00 4.30
270 271 0.181350 CCAGCCAAGTATCCCACCTC 59.819 60.000 0.00 0.00 0.00 3.85
271 272 1.281925 CCCAGCCAAGTATCCCACCT 61.282 60.000 0.00 0.00 0.00 4.00
276 277 1.146263 CGGTCCCAGCCAAGTATCC 59.854 63.158 0.00 0.00 0.00 2.59
297 298 4.753107 TCACTCGTTACAGGAAAAATCACC 59.247 41.667 0.00 0.00 0.00 4.02
315 316 6.060788 AGATCCCTAGCAAAATCAATCACTC 58.939 40.000 0.00 0.00 0.00 3.51
340 341 4.874966 CACAACAAAAACCACCATCATTGT 59.125 37.500 0.00 0.00 32.78 2.71
344 345 5.114780 CAATCACAACAAAAACCACCATCA 58.885 37.500 0.00 0.00 0.00 3.07
346 347 4.450053 CCAATCACAACAAAAACCACCAT 58.550 39.130 0.00 0.00 0.00 3.55
348 349 2.611751 GCCAATCACAACAAAAACCACC 59.388 45.455 0.00 0.00 0.00 4.61
357 358 2.127271 ATCCATCGCCAATCACAACA 57.873 45.000 0.00 0.00 0.00 3.33
370 371 0.248215 CGGTCGCAGCAAAATCCATC 60.248 55.000 0.00 0.00 0.00 3.51
372 373 1.302112 TCGGTCGCAGCAAAATCCA 60.302 52.632 0.00 0.00 0.00 3.41
384 385 1.070175 AGCAAAAATTGTCGTCGGTCG 60.070 47.619 0.00 0.00 41.41 4.79
388 389 2.570468 TCGAGCAAAAATTGTCGTCG 57.430 45.000 11.72 8.86 36.39 5.12
444 445 1.507141 CCCTTGTTGTGTCGTGGCTC 61.507 60.000 0.00 0.00 0.00 4.70
460 461 4.040706 TCGTAACAAGGTTACAACATCCCT 59.959 41.667 16.71 0.00 0.00 4.20
482 483 4.386867 TCAGGGACGATTGTAACTCATC 57.613 45.455 0.00 0.00 0.00 2.92
484 485 3.118775 CCATCAGGGACGATTGTAACTCA 60.119 47.826 0.00 0.00 40.01 3.41
541 542 1.905843 CCCAAAATCACACCCCGCA 60.906 57.895 0.00 0.00 0.00 5.69
544 545 2.290287 GGCCCCAAAATCACACCCC 61.290 63.158 0.00 0.00 0.00 4.95
568 569 7.338957 TCAAAATTTTCCCTCACATTGCTTTTT 59.661 29.630 0.00 0.00 0.00 1.94
585 586 5.579119 GTCGTTTCCCAACTGTCAAAATTTT 59.421 36.000 0.00 0.00 0.00 1.82
589 590 2.096174 CGTCGTTTCCCAACTGTCAAAA 59.904 45.455 0.00 0.00 0.00 2.44
596 597 1.001815 CAATTGCGTCGTTTCCCAACT 60.002 47.619 0.00 0.00 0.00 3.16
601 602 1.003331 TGTGTCAATTGCGTCGTTTCC 60.003 47.619 0.00 0.00 0.00 3.13
609 610 0.452987 CATCCCCTGTGTCAATTGCG 59.547 55.000 0.00 0.00 0.00 4.85
619 620 4.101448 GCTGGACGCATCCCCTGT 62.101 66.667 0.00 0.00 45.59 4.00
689 695 2.701551 TGGAAGAGAGAAAACCCCTCA 58.298 47.619 0.00 0.00 33.25 3.86
709 715 8.641541 CATGGCCAGGTATAATTTGAACTAAAT 58.358 33.333 13.05 0.00 40.67 1.40
712 718 6.068010 CCATGGCCAGGTATAATTTGAACTA 58.932 40.000 17.55 0.00 0.00 2.24
713 719 4.895297 CCATGGCCAGGTATAATTTGAACT 59.105 41.667 17.55 0.00 0.00 3.01
714 720 4.039124 CCCATGGCCAGGTATAATTTGAAC 59.961 45.833 17.55 0.00 0.00 3.18
715 721 4.222336 CCCATGGCCAGGTATAATTTGAA 58.778 43.478 17.55 0.00 0.00 2.69
716 722 3.843422 CCCATGGCCAGGTATAATTTGA 58.157 45.455 17.55 0.00 0.00 2.69
717 723 2.299867 GCCCATGGCCAGGTATAATTTG 59.700 50.000 17.55 3.23 44.06 2.32
718 724 2.608623 GCCCATGGCCAGGTATAATTT 58.391 47.619 17.55 0.00 44.06 1.82
719 725 2.309136 GCCCATGGCCAGGTATAATT 57.691 50.000 17.55 0.00 44.06 1.40
755 761 3.507009 GAGTCGGGTCGGGTCGAG 61.507 72.222 0.00 0.00 36.23 4.04
758 764 3.808656 GTCGAGTCGGGTCGGGTC 61.809 72.222 13.54 0.00 40.49 4.46
761 767 3.060615 AAGGTCGAGTCGGGTCGG 61.061 66.667 13.54 0.00 40.49 4.79
762 768 2.178521 CAAGGTCGAGTCGGGTCG 59.821 66.667 13.54 1.38 41.51 4.79
763 769 1.212229 GACAAGGTCGAGTCGGGTC 59.788 63.158 13.54 9.15 0.00 4.46
764 770 2.273912 GGACAAGGTCGAGTCGGGT 61.274 63.158 13.54 3.69 35.63 5.28
765 771 2.273179 TGGACAAGGTCGAGTCGGG 61.273 63.158 13.54 0.38 35.63 5.14
766 772 1.080705 GTGGACAAGGTCGAGTCGG 60.081 63.158 13.54 0.00 35.63 4.79
767 773 1.442184 CGTGGACAAGGTCGAGTCG 60.442 63.158 6.09 6.09 35.63 4.18
768 774 1.080705 CCGTGGACAAGGTCGAGTC 60.081 63.158 0.00 0.00 32.65 3.36
769 775 2.571216 CCCGTGGACAAGGTCGAGT 61.571 63.158 3.69 0.00 32.65 4.18
770 776 2.261671 CCCGTGGACAAGGTCGAG 59.738 66.667 3.69 0.00 32.65 4.04
771 777 2.522436 ACCCGTGGACAAGGTCGA 60.522 61.111 3.69 0.00 32.65 4.20
772 778 2.048503 GACCCGTGGACAAGGTCG 60.049 66.667 6.93 0.00 40.65 4.79
773 779 2.048503 CGACCCGTGGACAAGGTC 60.049 66.667 11.04 11.04 45.49 3.85
774 780 3.622826 CCGACCCGTGGACAAGGT 61.623 66.667 3.69 0.00 36.31 3.50
775 781 4.388499 CCCGACCCGTGGACAAGG 62.388 72.222 0.00 0.00 0.00 3.61
779 785 2.847435 CTTAAGCCCGACCCGTGGAC 62.847 65.000 0.00 0.00 0.00 4.02
780 786 2.604079 TTAAGCCCGACCCGTGGA 60.604 61.111 0.00 0.00 0.00 4.02
781 787 2.125269 CTTAAGCCCGACCCGTGG 60.125 66.667 0.00 0.00 0.00 4.94
782 788 2.818274 GCTTAAGCCCGACCCGTG 60.818 66.667 17.00 0.00 34.31 4.94
792 798 3.316588 GGGCTTGAAATCTAGGCTTAAGC 59.683 47.826 19.53 19.53 42.17 3.09
793 799 3.561725 CGGGCTTGAAATCTAGGCTTAAG 59.438 47.826 15.55 0.00 42.17 1.85
794 800 3.199071 TCGGGCTTGAAATCTAGGCTTAA 59.801 43.478 15.55 2.54 42.17 1.85
795 801 2.769663 TCGGGCTTGAAATCTAGGCTTA 59.230 45.455 15.55 4.49 42.17 3.09
796 802 1.559682 TCGGGCTTGAAATCTAGGCTT 59.440 47.619 15.55 0.00 42.17 4.35
797 803 1.134371 GTCGGGCTTGAAATCTAGGCT 60.134 52.381 15.55 0.00 42.17 4.58
798 804 1.300481 GTCGGGCTTGAAATCTAGGC 58.700 55.000 9.36 9.36 41.89 3.93
799 805 1.571919 CGTCGGGCTTGAAATCTAGG 58.428 55.000 0.00 0.00 0.00 3.02
800 806 1.571919 CCGTCGGGCTTGAAATCTAG 58.428 55.000 2.34 0.00 0.00 2.43
801 807 3.752796 CCGTCGGGCTTGAAATCTA 57.247 52.632 2.34 0.00 0.00 1.98
802 808 4.617875 CCGTCGGGCTTGAAATCT 57.382 55.556 2.34 0.00 0.00 2.40
838 844 2.853150 GCGCGAATACGACGGGTTC 61.853 63.158 12.10 2.12 43.57 3.62
839 845 2.882301 GCGCGAATACGACGGGTT 60.882 61.111 12.10 0.00 43.57 4.11
840 846 2.894240 AATGCGCGAATACGACGGGT 62.894 55.000 12.10 0.00 43.57 5.28
841 847 0.935831 TAATGCGCGAATACGACGGG 60.936 55.000 12.10 0.00 44.26 5.28
842 848 0.847670 TTAATGCGCGAATACGACGG 59.152 50.000 12.10 0.00 42.66 4.79
843 849 2.152301 TCATTAATGCGCGAATACGACG 59.848 45.455 12.10 0.00 42.66 5.12
844 850 3.763756 TCATTAATGCGCGAATACGAC 57.236 42.857 12.10 0.00 42.66 4.34
845 851 4.045783 TCTTCATTAATGCGCGAATACGA 58.954 39.130 12.10 0.00 42.66 3.43
846 852 4.369167 TCTTCATTAATGCGCGAATACG 57.631 40.909 12.10 0.00 42.93 3.06
847 853 4.702392 CCTCTTCATTAATGCGCGAATAC 58.298 43.478 12.10 0.00 0.00 1.89
848 854 3.186409 GCCTCTTCATTAATGCGCGAATA 59.814 43.478 12.10 0.00 0.00 1.75
849 855 2.031682 GCCTCTTCATTAATGCGCGAAT 60.032 45.455 12.10 0.00 0.00 3.34
850 856 1.330521 GCCTCTTCATTAATGCGCGAA 59.669 47.619 12.10 0.00 0.00 4.70
851 857 0.937304 GCCTCTTCATTAATGCGCGA 59.063 50.000 12.10 5.91 0.00 5.87
852 858 0.040958 GGCCTCTTCATTAATGCGCG 60.041 55.000 10.76 0.00 0.00 6.86
853 859 0.312102 GGGCCTCTTCATTAATGCGC 59.688 55.000 10.76 0.00 0.00 6.09
854 860 0.588252 CGGGCCTCTTCATTAATGCG 59.412 55.000 10.76 4.60 0.00 4.73
855 861 1.604278 GTCGGGCCTCTTCATTAATGC 59.396 52.381 10.76 0.00 0.00 3.56
856 862 2.222027 GGTCGGGCCTCTTCATTAATG 58.778 52.381 9.29 9.29 0.00 1.90
857 863 1.143073 GGGTCGGGCCTCTTCATTAAT 59.857 52.381 0.84 0.00 37.43 1.40
858 864 0.544697 GGGTCGGGCCTCTTCATTAA 59.455 55.000 0.84 0.00 37.43 1.40
859 865 1.682451 CGGGTCGGGCCTCTTCATTA 61.682 60.000 0.84 0.00 37.43 1.90
860 866 2.998949 GGGTCGGGCCTCTTCATT 59.001 61.111 0.84 0.00 37.43 2.57
861 867 3.470888 CGGGTCGGGCCTCTTCAT 61.471 66.667 0.84 0.00 37.43 2.57
862 868 4.689549 TCGGGTCGGGCCTCTTCA 62.690 66.667 0.84 0.00 37.43 3.02
863 869 3.839432 CTCGGGTCGGGCCTCTTC 61.839 72.222 0.84 0.00 37.43 2.87
879 885 4.338710 TAAAAGCCCGCCGTGCCT 62.339 61.111 0.00 0.00 0.00 4.75
880 886 3.810896 CTAAAAGCCCGCCGTGCC 61.811 66.667 0.00 0.00 0.00 5.01
881 887 4.476410 GCTAAAAGCCCGCCGTGC 62.476 66.667 0.00 0.00 34.48 5.34
882 888 4.160635 CGCTAAAAGCCCGCCGTG 62.161 66.667 0.00 0.00 38.18 4.94
883 889 2.784889 TAACGCTAAAAGCCCGCCGT 62.785 55.000 0.00 0.00 38.18 5.68
884 890 1.433837 ATAACGCTAAAAGCCCGCCG 61.434 55.000 0.00 0.00 38.18 6.46
885 891 0.028902 CATAACGCTAAAAGCCCGCC 59.971 55.000 0.00 0.00 38.18 6.13
886 892 0.028902 CCATAACGCTAAAAGCCCGC 59.971 55.000 0.00 0.00 38.18 6.13
887 893 0.661020 CCCATAACGCTAAAAGCCCG 59.339 55.000 0.00 0.00 38.18 6.13
888 894 0.384309 GCCCATAACGCTAAAAGCCC 59.616 55.000 0.00 0.00 38.18 5.19
889 895 0.384309 GGCCCATAACGCTAAAAGCC 59.616 55.000 0.00 0.00 38.18 4.35
890 896 1.065551 CTGGCCCATAACGCTAAAAGC 59.934 52.381 0.00 0.00 38.02 3.51
891 897 1.676006 CCTGGCCCATAACGCTAAAAG 59.324 52.381 0.00 0.00 0.00 2.27
892 898 1.757682 CCTGGCCCATAACGCTAAAA 58.242 50.000 0.00 0.00 0.00 1.52
893 899 0.750182 GCCTGGCCCATAACGCTAAA 60.750 55.000 7.66 0.00 0.00 1.85
894 900 1.153046 GCCTGGCCCATAACGCTAA 60.153 57.895 7.66 0.00 0.00 3.09
895 901 2.040009 GAGCCTGGCCCATAACGCTA 62.040 60.000 16.57 0.00 0.00 4.26
896 902 3.406595 GAGCCTGGCCCATAACGCT 62.407 63.158 16.57 0.00 0.00 5.07
897 903 2.902343 GAGCCTGGCCCATAACGC 60.902 66.667 16.57 0.00 0.00 4.84
898 904 2.588877 CGAGCCTGGCCCATAACG 60.589 66.667 16.57 8.17 0.00 3.18
899 905 2.203209 CCGAGCCTGGCCCATAAC 60.203 66.667 16.57 0.00 0.00 1.89
900 906 3.488569 CCCGAGCCTGGCCCATAA 61.489 66.667 16.57 0.00 0.00 1.90
911 917 2.600470 AAAAACCCAGGCCCGAGC 60.600 61.111 0.00 0.00 38.76 5.03
925 931 2.725221 ACCAAAGCCCAATGCAAAAA 57.275 40.000 0.00 0.00 44.83 1.94
926 932 2.038295 CCTACCAAAGCCCAATGCAAAA 59.962 45.455 0.00 0.00 44.83 2.44
927 933 1.622811 CCTACCAAAGCCCAATGCAAA 59.377 47.619 0.00 0.00 44.83 3.68
928 934 1.265236 CCTACCAAAGCCCAATGCAA 58.735 50.000 0.00 0.00 44.83 4.08
929 935 1.257055 GCCTACCAAAGCCCAATGCA 61.257 55.000 0.00 0.00 44.83 3.96
930 936 1.517361 GCCTACCAAAGCCCAATGC 59.483 57.895 0.00 0.00 41.71 3.56
931 937 2.201927 GGCCTACCAAAGCCCAATG 58.798 57.895 0.00 0.00 43.76 2.82
932 938 4.785575 GGCCTACCAAAGCCCAAT 57.214 55.556 0.00 0.00 43.76 3.16
954 960 1.532604 TATACCTCGCCATCTGCCGG 61.533 60.000 0.00 0.00 36.24 6.13
955 961 0.109086 CTATACCTCGCCATCTGCCG 60.109 60.000 0.00 0.00 36.24 5.69
956 962 0.969894 ACTATACCTCGCCATCTGCC 59.030 55.000 0.00 0.00 36.24 4.85
957 963 2.035961 TGAACTATACCTCGCCATCTGC 59.964 50.000 0.00 0.00 0.00 4.26
958 964 4.322080 TTGAACTATACCTCGCCATCTG 57.678 45.455 0.00 0.00 0.00 2.90
959 965 5.070446 TCATTTGAACTATACCTCGCCATCT 59.930 40.000 0.00 0.00 0.00 2.90
960 966 5.297547 TCATTTGAACTATACCTCGCCATC 58.702 41.667 0.00 0.00 0.00 3.51
961 967 5.290493 TCATTTGAACTATACCTCGCCAT 57.710 39.130 0.00 0.00 0.00 4.40
962 968 4.746535 TCATTTGAACTATACCTCGCCA 57.253 40.909 0.00 0.00 0.00 5.69
963 969 5.758296 TCAATCATTTGAACTATACCTCGCC 59.242 40.000 0.00 0.00 38.90 5.54
964 970 6.844696 TCAATCATTTGAACTATACCTCGC 57.155 37.500 0.00 0.00 38.90 5.03
965 971 7.041780 CCCTTCAATCATTTGAACTATACCTCG 60.042 40.741 0.00 0.00 44.81 4.63
966 972 7.775561 ACCCTTCAATCATTTGAACTATACCTC 59.224 37.037 0.00 0.00 44.81 3.85
967 973 7.643123 ACCCTTCAATCATTTGAACTATACCT 58.357 34.615 0.00 0.00 44.81 3.08
968 974 7.881775 ACCCTTCAATCATTTGAACTATACC 57.118 36.000 0.00 0.00 44.81 2.73
970 976 9.967451 TGTTACCCTTCAATCATTTGAACTATA 57.033 29.630 0.00 0.00 44.81 1.31
971 977 8.877864 TGTTACCCTTCAATCATTTGAACTAT 57.122 30.769 0.00 0.00 44.81 2.12
1746 3984 1.524002 CGGATGTGCCAGATGAGGT 59.476 57.895 0.00 0.00 35.94 3.85
1801 4039 1.289066 CACGAAGCCGAACTCCAGA 59.711 57.895 0.00 0.00 39.50 3.86
1829 4067 4.838152 CCCCATGTCGAGTGCGGG 62.838 72.222 8.78 8.78 38.28 6.13
1856 4094 2.505557 CCCGACGCGGTACTTGAC 60.506 66.667 12.47 0.00 46.80 3.18
1957 5512 2.030562 ACGTTCTGGCCGTCCTTG 59.969 61.111 0.00 0.00 31.97 3.61
1981 5536 1.000993 TCCCTCTCCAGTCTCCAGC 59.999 63.158 0.00 0.00 0.00 4.85
1989 5544 1.197430 AAGCACACCTCCCTCTCCAG 61.197 60.000 0.00 0.00 0.00 3.86
1990 5545 1.152030 AAGCACACCTCCCTCTCCA 60.152 57.895 0.00 0.00 0.00 3.86
1991 5546 1.298014 CAAGCACACCTCCCTCTCC 59.702 63.158 0.00 0.00 0.00 3.71
1992 5547 1.376553 GCAAGCACACCTCCCTCTC 60.377 63.158 0.00 0.00 0.00 3.20
1993 5548 1.835927 GAGCAAGCACACCTCCCTCT 61.836 60.000 0.00 0.00 0.00 3.69
1994 5549 1.376553 GAGCAAGCACACCTCCCTC 60.377 63.158 0.00 0.00 0.00 4.30
1995 5550 2.753029 GAGCAAGCACACCTCCCT 59.247 61.111 0.00 0.00 0.00 4.20
2000 5555 3.368571 GCCTGGAGCAAGCACACC 61.369 66.667 0.00 0.00 42.97 4.16
2024 5579 3.751246 GGCAGCTGCGGCATTTCA 61.751 61.111 31.19 0.00 43.26 2.69
2174 5729 3.359523 CCGTCGTCCGTCACCAGA 61.360 66.667 0.00 0.00 33.66 3.86
2240 5795 2.507992 CAGTCAGAGCCGGCTTCG 60.508 66.667 33.34 24.31 0.00 3.79
2245 5800 3.686760 TCTGTCAGTCAGAGCCGG 58.313 61.111 0.00 0.00 46.77 6.13
2495 6052 3.821033 GACACCCAAGCTTCAGTAAACAT 59.179 43.478 0.00 0.00 0.00 2.71
2536 6093 7.880059 TGATCTCGAAAACATATGCTATCTG 57.120 36.000 1.58 0.00 0.00 2.90
2597 6159 8.764524 ATTTCGGAGCAGAGATAATATTGTAC 57.235 34.615 0.00 0.00 0.00 2.90
2606 6168 6.623114 GCGACTTATATTTCGGAGCAGAGATA 60.623 42.308 5.84 0.00 35.73 1.98
2608 6170 4.556898 GCGACTTATATTTCGGAGCAGAGA 60.557 45.833 5.84 0.00 35.73 3.10
2678 6247 5.401750 ACATGCATATCTTCTACTCCCTCT 58.598 41.667 0.00 0.00 0.00 3.69
2941 6510 9.800433 TGCACATTATGTTAATGGATAAAACAG 57.200 29.630 10.94 0.00 36.62 3.16
2982 6551 7.764443 TCCATAGATGTTTTTCCTTTCTACTCG 59.236 37.037 0.00 0.00 0.00 4.18
3005 6575 0.179111 GATGGTCGACGCTTCATCCA 60.179 55.000 17.00 5.59 32.27 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.