Multiple sequence alignment - TraesCS1A01G248400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G248400 chr1A 100.000 9935 0 0 1 9935 440450318 440440384 0.000000e+00 18347.0
1 TraesCS1A01G248400 chr1A 82.716 81 9 2 8491 8571 164468791 164468716 6.440000e-07 67.6
2 TraesCS1A01G248400 chr1D 98.205 5851 80 12 788 6618 340665966 340660121 0.000000e+00 10200.0
3 TraesCS1A01G248400 chr1D 91.902 3112 137 37 6616 9687 340660040 340657004 0.000000e+00 4244.0
4 TraesCS1A01G248400 chr1B 96.235 4064 110 14 788 4818 456272221 456268168 0.000000e+00 6617.0
5 TraesCS1A01G248400 chr1B 93.333 3015 131 40 4817 7818 456268086 456265129 0.000000e+00 4390.0
6 TraesCS1A01G248400 chr1B 91.247 1508 97 16 8308 9784 456264789 456263286 0.000000e+00 2021.0
7 TraesCS1A01G248400 chr1B 92.214 1400 82 16 5145 6530 509125095 509126481 0.000000e+00 1956.0
8 TraesCS1A01G248400 chr1B 91.128 789 54 11 7007 7781 509126708 509127494 0.000000e+00 1055.0
9 TraesCS1A01G248400 chr1B 89.362 376 31 4 7722 8092 509127526 509127897 1.950000e-126 464.0
10 TraesCS1A01G248400 chr1B 86.150 361 27 6 7856 8216 456265126 456264789 1.580000e-97 368.0
11 TraesCS1A01G248400 chr1B 94.828 232 11 1 6741 6971 509126479 509126710 2.640000e-95 361.0
12 TraesCS1A01G248400 chrUn 89.378 1591 117 22 6529 8087 267269589 267268019 0.000000e+00 1954.0
13 TraesCS1A01G248400 chrUn 89.322 1592 117 23 6529 8087 186909836 186908265 0.000000e+00 1949.0
14 TraesCS1A01G248400 chrUn 89.404 1425 97 21 3884 5296 186912389 186911007 0.000000e+00 1746.0
15 TraesCS1A01G248400 chrUn 89.270 1370 94 20 3938 5296 267272086 267270759 0.000000e+00 1666.0
16 TraesCS1A01G248400 chrUn 89.270 1370 94 20 3938 5296 400988057 400989384 0.000000e+00 1666.0
17 TraesCS1A01G248400 chrUn 89.990 1049 72 15 5602 6645 267270608 267269588 0.000000e+00 1325.0
18 TraesCS1A01G248400 chrUn 89.914 1051 70 19 5602 6645 186910856 186909835 0.000000e+00 1321.0
19 TraesCS1A01G248400 chrUn 89.581 931 78 11 7172 8087 324357617 324356691 0.000000e+00 1164.0
20 TraesCS1A01G248400 chrUn 89.581 931 78 11 7172 8087 425038972 425038046 0.000000e+00 1164.0
21 TraesCS1A01G248400 chrUn 97.051 373 1 1 1 363 373262625 373262253 3.940000e-173 619.0
22 TraesCS1A01G248400 chrUn 88.235 289 23 9 8214 8493 186908242 186907956 1.600000e-87 335.0
23 TraesCS1A01G248400 chrUn 88.235 289 23 9 8214 8493 267267996 267267710 1.600000e-87 335.0
24 TraesCS1A01G248400 chrUn 88.235 289 23 9 8214 8493 324356668 324356382 1.600000e-87 335.0
25 TraesCS1A01G248400 chrUn 89.575 259 20 6 8214 8467 425038023 425037767 1.240000e-83 322.0
26 TraesCS1A01G248400 chr6A 89.322 1592 117 23 6529 8087 615200376 615201947 0.000000e+00 1949.0
27 TraesCS1A01G248400 chr6A 81.642 2119 284 74 895 2965 402960216 402958155 0.000000e+00 1661.0
28 TraesCS1A01G248400 chr6A 89.914 1051 70 19 5602 6645 615199356 615200377 0.000000e+00 1321.0
29 TraesCS1A01G248400 chr6A 89.049 831 66 15 4473 5296 615198393 615199205 0.000000e+00 1007.0
30 TraesCS1A01G248400 chr6A 88.235 289 23 9 8214 8493 615201970 615202256 1.600000e-87 335.0
31 TraesCS1A01G248400 chr6A 90.647 139 13 0 3570 3708 402957630 402957492 1.700000e-42 185.0
32 TraesCS1A01G248400 chr5A 91.427 1423 94 16 3884 5296 602841725 602840321 0.000000e+00 1927.0
33 TraesCS1A01G248400 chr5A 88.947 1339 83 25 6794 8087 602837297 602835979 0.000000e+00 1592.0
34 TraesCS1A01G248400 chr5A 91.444 935 60 14 5602 6533 602840170 602839253 0.000000e+00 1266.0
35 TraesCS1A01G248400 chr5A 95.501 489 18 3 303 788 246822053 246822540 0.000000e+00 778.0
36 TraesCS1A01G248400 chr5A 88.927 289 22 8 8214 8493 602835956 602835669 2.050000e-91 348.0
37 TraesCS1A01G248400 chr5A 93.243 74 5 0 8568 8641 602835672 602835599 1.060000e-19 110.0
38 TraesCS1A01G248400 chr6B 82.102 2112 287 60 895 2965 440787614 440785553 0.000000e+00 1722.0
39 TraesCS1A01G248400 chr6B 90.627 1291 96 14 4012 5296 720715899 720714628 0.000000e+00 1690.0
40 TraesCS1A01G248400 chr6B 89.963 1086 63 22 6543 7598 720713489 720712420 0.000000e+00 1360.0
41 TraesCS1A01G248400 chr6B 92.511 948 55 5 5279 6218 720714451 720713512 0.000000e+00 1343.0
42 TraesCS1A01G248400 chr6B 91.187 817 57 9 7024 7837 720760924 720760120 0.000000e+00 1096.0
43 TraesCS1A01G248400 chr6B 81.416 1356 184 48 1183 2509 444307470 444306154 0.000000e+00 1046.0
44 TraesCS1A01G248400 chr6B 88.830 376 36 2 7722 8092 720760010 720759636 3.270000e-124 457.0
45 TraesCS1A01G248400 chr6B 87.193 367 38 5 4042 4407 440778611 440778253 9.290000e-110 409.0
46 TraesCS1A01G248400 chr6B 93.939 132 7 1 3884 4014 720716122 720715991 2.190000e-46 198.0
47 TraesCS1A01G248400 chr6B 90.647 139 13 0 3570 3708 440779567 440779429 1.700000e-42 185.0
48 TraesCS1A01G248400 chr7B 98.120 798 5 1 1 788 255049080 255049877 0.000000e+00 1382.0
49 TraesCS1A01G248400 chr7B 97.619 798 9 1 1 788 155733070 155733867 0.000000e+00 1360.0
50 TraesCS1A01G248400 chr7B 97.136 803 7 5 1 789 291562887 291563687 0.000000e+00 1341.0
51 TraesCS1A01G248400 chr7B 96.883 802 11 4 1 788 152476465 152475664 0.000000e+00 1330.0
52 TraesCS1A01G248400 chr7B 91.837 49 2 1 8525 8571 83912801 83912753 6.440000e-07 67.6
53 TraesCS1A01G248400 chr3B 98.120 798 5 1 1 788 700381289 700380492 0.000000e+00 1382.0
54 TraesCS1A01G248400 chr3B 74.005 377 74 14 5984 6355 558081207 558080850 2.250000e-26 132.0
55 TraesCS1A01G248400 chr3B 96.970 33 1 0 8540 8572 376632513 376632545 1.000000e-03 56.5
56 TraesCS1A01G248400 chr4A 97.875 800 5 3 1 788 611029842 611029043 0.000000e+00 1373.0
57 TraesCS1A01G248400 chr2B 96.380 801 6 2 1 791 309476772 309475985 0.000000e+00 1297.0
58 TraesCS1A01G248400 chr6D 81.677 1610 226 48 929 2509 283458073 283456504 0.000000e+00 1275.0
59 TraesCS1A01G248400 chr6D 83.841 1182 155 27 895 2058 278648376 278647213 0.000000e+00 1092.0
60 TraesCS1A01G248400 chr6D 83.788 660 75 22 5697 6349 278643541 278642907 1.850000e-166 597.0
61 TraesCS1A01G248400 chr6D 82.090 737 94 25 2242 2965 278647002 278646291 6.640000e-166 595.0
62 TraesCS1A01G248400 chr6D 86.921 367 37 6 4042 4407 278644913 278644557 1.550000e-107 401.0
63 TraesCS1A01G248400 chr6D 91.367 139 12 0 3570 3708 278645733 278645595 3.660000e-44 191.0
64 TraesCS1A01G248400 chr6D 97.321 112 3 0 4039 4150 456941815 456941926 3.660000e-44 191.0
65 TraesCS1A01G248400 chr5B 95.137 802 25 6 1 788 589809074 589808273 0.000000e+00 1253.0
66 TraesCS1A01G248400 chr5B 82.278 79 10 4 8501 8578 44223220 44223295 2.320000e-06 65.8
67 TraesCS1A01G248400 chr5B 97.222 36 0 1 8544 8578 461642389 461642424 1.080000e-04 60.2
68 TraesCS1A01G248400 chr5D 95.122 41 0 2 8544 8583 378048428 378048389 8.330000e-06 63.9
69 TraesCS1A01G248400 chr5D 97.222 36 0 1 8544 8578 384785744 384785779 1.080000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G248400 chr1A 440440384 440450318 9934 True 18347.00 18347 100.00000 1 9935 1 chr1A.!!$R2 9934
1 TraesCS1A01G248400 chr1D 340657004 340665966 8962 True 7222.00 10200 95.05350 788 9687 2 chr1D.!!$R1 8899
2 TraesCS1A01G248400 chr1B 456263286 456272221 8935 True 3349.00 6617 91.74125 788 9784 4 chr1B.!!$R1 8996
3 TraesCS1A01G248400 chr1B 509125095 509127897 2802 False 959.00 1956 91.88300 5145 8092 4 chr1B.!!$F1 2947
4 TraesCS1A01G248400 chrUn 400988057 400989384 1327 False 1666.00 1666 89.27000 3938 5296 1 chrUn.!!$F1 1358
5 TraesCS1A01G248400 chrUn 186907956 186912389 4433 True 1337.75 1949 89.21875 3884 8493 4 chrUn.!!$R2 4609
6 TraesCS1A01G248400 chrUn 267267710 267272086 4376 True 1320.00 1954 89.21825 3938 8493 4 chrUn.!!$R3 4555
7 TraesCS1A01G248400 chrUn 324356382 324357617 1235 True 749.50 1164 88.90800 7172 8493 2 chrUn.!!$R4 1321
8 TraesCS1A01G248400 chrUn 425037767 425038972 1205 True 743.00 1164 89.57800 7172 8467 2 chrUn.!!$R5 1295
9 TraesCS1A01G248400 chr6A 615198393 615202256 3863 False 1153.00 1949 89.13000 4473 8493 4 chr6A.!!$F1 4020
10 TraesCS1A01G248400 chr6A 402957492 402960216 2724 True 923.00 1661 86.14450 895 3708 2 chr6A.!!$R1 2813
11 TraesCS1A01G248400 chr5A 602835599 602841725 6126 True 1048.60 1927 90.79760 3884 8641 5 chr5A.!!$R1 4757
12 TraesCS1A01G248400 chr6B 440785553 440787614 2061 True 1722.00 1722 82.10200 895 2965 1 chr6B.!!$R1 2070
13 TraesCS1A01G248400 chr6B 720712420 720716122 3702 True 1147.75 1690 91.76000 3884 7598 4 chr6B.!!$R4 3714
14 TraesCS1A01G248400 chr6B 444306154 444307470 1316 True 1046.00 1046 81.41600 1183 2509 1 chr6B.!!$R2 1326
15 TraesCS1A01G248400 chr6B 720759636 720760924 1288 True 776.50 1096 90.00850 7024 8092 2 chr6B.!!$R5 1068
16 TraesCS1A01G248400 chr6B 440778253 440779567 1314 True 297.00 409 88.92000 3570 4407 2 chr6B.!!$R3 837
17 TraesCS1A01G248400 chr7B 255049080 255049877 797 False 1382.00 1382 98.12000 1 788 1 chr7B.!!$F2 787
18 TraesCS1A01G248400 chr7B 155733070 155733867 797 False 1360.00 1360 97.61900 1 788 1 chr7B.!!$F1 787
19 TraesCS1A01G248400 chr7B 291562887 291563687 800 False 1341.00 1341 97.13600 1 789 1 chr7B.!!$F3 788
20 TraesCS1A01G248400 chr7B 152475664 152476465 801 True 1330.00 1330 96.88300 1 788 1 chr7B.!!$R2 787
21 TraesCS1A01G248400 chr3B 700380492 700381289 797 True 1382.00 1382 98.12000 1 788 1 chr3B.!!$R2 787
22 TraesCS1A01G248400 chr4A 611029043 611029842 799 True 1373.00 1373 97.87500 1 788 1 chr4A.!!$R1 787
23 TraesCS1A01G248400 chr2B 309475985 309476772 787 True 1297.00 1297 96.38000 1 791 1 chr2B.!!$R1 790
24 TraesCS1A01G248400 chr6D 283456504 283458073 1569 True 1275.00 1275 81.67700 929 2509 1 chr6D.!!$R1 1580
25 TraesCS1A01G248400 chr6D 278642907 278648376 5469 True 575.20 1092 85.60140 895 6349 5 chr6D.!!$R2 5454
26 TraesCS1A01G248400 chr5B 589808273 589809074 801 True 1253.00 1253 95.13700 1 788 1 chr5B.!!$R1 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 393 0.041238 CACCTCCTGTCAGTCCCCTA 59.959 60.000 0.0 0.0 0.00 3.53 F
2215 2265 0.676782 GCATGGCTCGTTTACCCTGT 60.677 55.000 0.0 0.0 0.00 4.00 F
2222 2272 3.373130 GGCTCGTTTACCCTGTTGTATTC 59.627 47.826 0.0 0.0 0.00 1.75 F
3389 3590 2.033801 ACATGTGCTTGACTCAAACTGC 59.966 45.455 0.0 0.0 0.00 4.40 F
3942 4709 2.507058 TGCCTCAGCATCCACTTAGAAT 59.493 45.455 0.0 0.0 46.52 2.40 F
4572 5566 3.507162 TGAATGCTCTCTTTGAACCCA 57.493 42.857 0.0 0.0 0.00 4.51 F
5189 6284 0.398318 GCACCCAAGGTTCTGAGAGT 59.602 55.000 0.0 0.0 31.02 3.24 F
6035 7441 1.000955 GGAGCGTCAAGAGTTCCTGAA 59.999 52.381 0.0 0.0 36.28 3.02 F
7651 11244 0.391130 TCCGATCAAACTGGAAGCGG 60.391 55.000 0.0 0.0 37.60 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2222 2272 4.526970 CTGACGTATCAGCAGAAAATGG 57.473 45.455 0.00 0.00 45.83 3.16 R
3361 3562 4.507710 TGAGTCAAGCACATGTTAGATCC 58.492 43.478 0.00 0.00 0.00 3.36 R
3942 4709 7.611467 AGTGCAATCCAACTTCAGATATGTTAA 59.389 33.333 0.00 0.00 0.00 2.01 R
4705 5700 1.216064 TCTGAGGCAATGCAGGGTAT 58.784 50.000 7.79 0.00 33.05 2.73 R
5103 6198 2.723273 CCAAATGACCCTACAACTCCC 58.277 52.381 0.00 0.00 0.00 4.30 R
6127 7535 0.872388 GCCTCCACGGTAAAACAGTG 59.128 55.000 3.72 3.72 42.61 3.66 R
7089 10627 1.845809 GAAGTTGTGCCAGCGACCAG 61.846 60.000 0.00 0.00 0.00 4.00 R
7818 11723 0.618458 TGGATCAGTGTAGGGGCAAC 59.382 55.000 0.00 0.00 0.00 4.17 R
9066 13003 1.544825 CGAGGTCTGCCAAGAGGGAA 61.545 60.000 0.00 0.00 40.01 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.819595 CCATGGGCGACAGTTCGG 60.820 66.667 2.85 0.00 45.98 4.30
372 393 0.041238 CACCTCCTGTCAGTCCCCTA 59.959 60.000 0.00 0.00 0.00 3.53
653 675 1.305633 CAGGAGCCCACCTCTCTCA 60.306 63.158 0.00 0.00 40.57 3.27
999 1026 2.427506 GAAGGTGAGTAGCAACCAAGG 58.572 52.381 0.00 0.00 33.51 3.61
1032 1059 3.810386 GGGCGATCATTAGGAGAAGAAAC 59.190 47.826 0.00 0.00 0.00 2.78
1293 1320 4.522022 GGCTATGGAATTGGAAGGAATGAG 59.478 45.833 0.00 0.00 0.00 2.90
1387 1420 8.257306 GGCAACCTAAATTGGATATTGAAGAAA 58.743 33.333 0.00 0.00 0.00 2.52
1974 2011 9.498176 GAATTCCTACTACCAGTGTTTCTTAAA 57.502 33.333 0.00 0.00 0.00 1.52
2082 2127 9.933723 TGTCATCATTATACTGTCCATTGATAG 57.066 33.333 0.00 0.00 35.94 2.08
2215 2265 0.676782 GCATGGCTCGTTTACCCTGT 60.677 55.000 0.00 0.00 0.00 4.00
2222 2272 3.373130 GGCTCGTTTACCCTGTTGTATTC 59.627 47.826 0.00 0.00 0.00 1.75
2225 2275 5.168647 TCGTTTACCCTGTTGTATTCCAT 57.831 39.130 0.00 0.00 0.00 3.41
3018 3120 3.758300 AGCACTATTTTGTGTTATGCGC 58.242 40.909 0.00 0.00 39.89 6.09
3361 3562 7.532571 TCTACAATTGACTCTGCATTTGAATG 58.467 34.615 13.59 0.00 39.40 2.67
3389 3590 2.033801 ACATGTGCTTGACTCAAACTGC 59.966 45.455 0.00 0.00 0.00 4.40
3942 4709 2.507058 TGCCTCAGCATCCACTTAGAAT 59.493 45.455 0.00 0.00 46.52 2.40
4572 5566 3.507162 TGAATGCTCTCTTTGAACCCA 57.493 42.857 0.00 0.00 0.00 4.51
4958 6043 5.953548 TCCCTTTATTTGTTACTTAAGGCCC 59.046 40.000 7.53 0.00 32.66 5.80
5175 6270 3.873952 GTGAGAATGTCTAAGATGCACCC 59.126 47.826 0.00 0.00 0.00 4.61
5189 6284 0.398318 GCACCCAAGGTTCTGAGAGT 59.602 55.000 0.00 0.00 31.02 3.24
5561 6867 7.826690 ACTGTTACCCAATTGTTTTAGCATAG 58.173 34.615 4.43 0.00 0.00 2.23
5853 7258 6.790232 AGGGAAGAAGAAGAACTGATAGAG 57.210 41.667 0.00 0.00 0.00 2.43
6035 7441 1.000955 GGAGCGTCAAGAGTTCCTGAA 59.999 52.381 0.00 0.00 36.28 3.02
6371 7782 2.155924 GTCAAAGCTCGTAACACTCTGC 59.844 50.000 0.00 0.00 0.00 4.26
6507 7920 5.132897 TGGGCACAATTTTGTCAGATAAC 57.867 39.130 0.00 0.00 39.91 1.89
6681 8302 3.949113 GGGTTAATTGGCCTTGTATTCGA 59.051 43.478 3.32 0.00 0.00 3.71
6682 8303 4.201980 GGGTTAATTGGCCTTGTATTCGAC 60.202 45.833 3.32 2.23 0.00 4.20
6683 8304 4.201980 GGTTAATTGGCCTTGTATTCGACC 60.202 45.833 3.32 7.11 0.00 4.79
6684 8305 3.366052 AATTGGCCTTGTATTCGACCT 57.634 42.857 3.32 0.00 0.00 3.85
6685 8306 2.871096 TTGGCCTTGTATTCGACCTT 57.129 45.000 3.32 0.00 0.00 3.50
6686 8307 3.985019 TTGGCCTTGTATTCGACCTTA 57.015 42.857 3.32 0.00 0.00 2.69
6687 8308 4.497291 TTGGCCTTGTATTCGACCTTAT 57.503 40.909 3.32 0.00 0.00 1.73
6688 8309 5.617528 TTGGCCTTGTATTCGACCTTATA 57.382 39.130 3.32 0.00 0.00 0.98
6689 8310 4.952460 TGGCCTTGTATTCGACCTTATAC 58.048 43.478 3.32 0.00 0.00 1.47
6690 8311 4.406326 TGGCCTTGTATTCGACCTTATACA 59.594 41.667 3.32 4.01 35.91 2.29
6691 8312 4.989168 GGCCTTGTATTCGACCTTATACAG 59.011 45.833 0.00 0.72 38.19 2.74
6692 8313 5.221382 GGCCTTGTATTCGACCTTATACAGA 60.221 44.000 0.00 1.09 38.19 3.41
6757 8378 3.434309 ACCAGTTTTCGGCCTAGTAGTA 58.566 45.455 0.00 0.00 0.00 1.82
6825 10354 8.441312 ACTAAACAGAACAAACGGATTTCTTA 57.559 30.769 0.00 0.00 0.00 2.10
6907 10436 7.334421 GCATCCTGAATTAGTCAACTTTCACTA 59.666 37.037 0.00 0.00 35.22 2.74
7029 10560 7.673082 AGAGTTATACTACAAGGGTACTGTGTT 59.327 37.037 0.00 0.00 0.00 3.32
7060 10591 8.635877 ACATTGAAGTATACGATTGAGAGTTC 57.364 34.615 0.00 0.00 0.00 3.01
7276 10828 7.522236 CGTGTGGCTTTATGACTGATCTCTATA 60.522 40.741 0.00 0.00 0.00 1.31
7319 10872 7.736447 CAAGTCTGTTAGTTGGAGAGATTTT 57.264 36.000 0.00 0.00 35.24 1.82
7434 11024 2.877168 GGTTGATGCTATGCTTCAGGAG 59.123 50.000 7.88 0.00 42.14 3.69
7455 11045 7.279758 CAGGAGTTAGAAAAGGAGATTGATGAC 59.720 40.741 0.00 0.00 0.00 3.06
7531 11122 5.008118 TGCATGTGTATCAAAGTCGTTTCAA 59.992 36.000 0.00 0.00 0.00 2.69
7624 11217 2.755686 TGTTTAGGTAGGGAGGGCTAC 58.244 52.381 0.00 0.00 0.00 3.58
7651 11244 0.391130 TCCGATCAAACTGGAAGCGG 60.391 55.000 0.00 0.00 37.60 5.52
7678 11271 2.490903 TCGGTAGTACTGAGTTTCCTGC 59.509 50.000 7.78 0.00 0.00 4.85
7698 11291 3.054139 TGCCAATCTGTAGGAATTGAGCT 60.054 43.478 0.00 0.00 0.00 4.09
7750 11344 5.012354 CCCCTAAGTGGTAGTTTAGTTGTCA 59.988 44.000 0.00 0.00 0.00 3.58
7799 11593 7.821359 TCTTATGATTTATATGCTGCTCTGGTC 59.179 37.037 0.00 0.00 0.00 4.02
7818 11723 3.865745 GGTCCAGATATGTCGACACTTTG 59.134 47.826 22.71 15.71 0.00 2.77
7820 11725 4.929808 GTCCAGATATGTCGACACTTTGTT 59.070 41.667 22.71 6.34 0.00 2.83
7851 11756 4.884164 CACTGATCCAGGGATTTACCTTTC 59.116 45.833 1.69 0.00 36.97 2.62
7872 11777 8.090214 CCTTTCCTCAGAAAAATGCTGATTTTA 58.910 33.333 0.00 0.00 40.27 1.52
8009 11915 4.399483 AAACTGTCCCTACTCTCCACTA 57.601 45.455 0.00 0.00 0.00 2.74
8050 11956 4.640690 AGGGTGCGAGAGGGGTGT 62.641 66.667 0.00 0.00 0.00 4.16
8052 11958 2.288025 GGGTGCGAGAGGGGTGTAA 61.288 63.158 0.00 0.00 0.00 2.41
8055 11961 0.249398 GTGCGAGAGGGGTGTAACAT 59.751 55.000 0.00 0.00 39.98 2.71
8169 12080 1.661112 GAATCTCCTTTTCGTGCTCCG 59.339 52.381 0.00 0.00 38.13 4.63
8209 12120 2.416836 CGACCATGTGAAGTATCGGTGT 60.417 50.000 0.00 0.00 0.00 4.16
8262 12182 6.238842 GCAGCATTTATCTACCATGTTCACAT 60.239 38.462 0.00 0.00 36.96 3.21
8328 12248 2.722094 AGTCTGTGTGGCAAGTCAAAA 58.278 42.857 0.00 0.00 0.00 2.44
8471 12399 7.420002 TGCTTATGTGACATGATAAAGATTGC 58.580 34.615 8.61 0.00 0.00 3.56
8494 12422 8.911247 TGCTATTCAATGCAGTATATAGTACG 57.089 34.615 13.10 0.00 34.84 3.67
8499 12427 5.947566 TCAATGCAGTATATAGTACGCCCTA 59.052 40.000 0.00 0.00 0.00 3.53
8517 12445 5.548406 GCCCTACGATCCATATTAGTTGTT 58.452 41.667 0.00 0.00 0.00 2.83
8521 12449 6.706270 CCTACGATCCATATTAGTTGTTGCTT 59.294 38.462 0.00 0.00 0.00 3.91
8560 12488 8.347035 CCGTTTTACCGACAATTAATATGGATT 58.653 33.333 0.00 0.00 0.00 3.01
8571 12499 8.164070 ACAATTAATATGGATTGGAGGGAGTAC 58.836 37.037 13.06 0.00 37.53 2.73
8578 12506 4.019321 TGGATTGGAGGGAGTACTCTTTTG 60.019 45.833 21.88 0.00 37.63 2.44
8584 12512 4.142425 GGAGGGAGTACTCTTTTGTAGACG 60.142 50.000 21.88 0.00 37.63 4.18
8636 12564 5.469373 TTGTCAACATGCTGATATCGTTC 57.531 39.130 1.44 0.00 0.00 3.95
8643 12571 4.517832 ACATGCTGATATCGTTCGTACCTA 59.482 41.667 0.00 0.00 0.00 3.08
8679 12607 2.106338 TGATGGCAAAGTGACTCCTGAA 59.894 45.455 0.00 0.00 0.00 3.02
8883 12820 0.035317 AAGACATCGTGAAGCTGGCA 59.965 50.000 0.00 0.00 0.00 4.92
8951 12888 4.253685 CATTAGTCGGGAACACACTTGAT 58.746 43.478 0.00 0.00 0.00 2.57
9066 13003 2.559785 CAAGACGGCCATTCTTGCT 58.440 52.632 24.23 0.62 42.58 3.91
9067 13004 0.883833 CAAGACGGCCATTCTTGCTT 59.116 50.000 24.23 5.73 42.58 3.91
9089 13026 1.757118 CCTCTTGGCAGACCTCGATAA 59.243 52.381 0.00 0.00 36.63 1.75
9133 13070 7.482169 AGGATAACTTACTGTGAAGATGACA 57.518 36.000 0.00 0.00 0.00 3.58
9178 13115 3.810743 GCCTAATGGATCCGCAGGTAAAT 60.811 47.826 21.12 0.41 42.77 1.40
9188 13125 0.885196 GCAGGTAAATGGCAACCGAA 59.115 50.000 0.00 0.00 40.88 4.30
9204 13141 2.223947 ACCGAAATTTCAACTGGTTGCC 60.224 45.455 17.99 0.00 40.24 4.52
9252 13189 1.982395 TCACGGGATTCGCCACTCT 60.982 57.895 0.00 0.00 43.89 3.24
9255 13192 0.683504 ACGGGATTCGCCACTCTACT 60.684 55.000 0.00 0.00 43.89 2.57
9324 13261 1.268352 TGGGTTAAGCACATCGTTTGC 59.732 47.619 7.03 0.00 40.52 3.68
9358 13295 7.227711 TGCTATTTGTTGCTTTTACAGTCAGTA 59.772 33.333 0.00 0.00 0.00 2.74
9427 13364 7.575414 TTATCTTGTCTCTGATCCTAGTCAC 57.425 40.000 0.00 0.00 0.00 3.67
9441 13378 4.597507 TCCTAGTCACTTCCCATTGTCTTT 59.402 41.667 0.00 0.00 0.00 2.52
9454 13391 6.775142 TCCCATTGTCTTTAACTTCATTGTCA 59.225 34.615 0.00 0.00 0.00 3.58
9474 13411 3.327757 TCACCATTTCTACTCACCTGCTT 59.672 43.478 0.00 0.00 0.00 3.91
9481 13418 2.028130 CTACTCACCTGCTTCTCCGAT 58.972 52.381 0.00 0.00 0.00 4.18
9524 13461 3.695606 GTCTGGTCCAGCTGCGGA 61.696 66.667 14.64 2.37 0.00 5.54
9541 13485 1.135527 CGGAAGGTGCTACCGTGATTA 59.864 52.381 0.00 0.00 44.90 1.75
9560 13504 2.037367 TACTGCTCGGTGCCCTCT 59.963 61.111 0.00 0.00 42.00 3.69
9571 13515 1.410882 GGTGCCCTCTCTTGCTACTAG 59.589 57.143 0.00 0.00 0.00 2.57
9739 13685 8.428063 AGACCAAAATTCAAAATACATGTTGGA 58.572 29.630 2.30 0.00 37.13 3.53
9770 13716 9.664332 AAGGACATATCTAGCATAAATGATGTC 57.336 33.333 9.84 9.84 40.64 3.06
9771 13717 8.819845 AGGACATATCTAGCATAAATGATGTCA 58.180 33.333 15.98 0.00 42.28 3.58
9792 13738 7.587629 TGTCAAAAGAAGACAAATCTAGCATG 58.412 34.615 0.00 0.00 42.57 4.06
9795 13741 9.017509 TCAAAAGAAGACAAATCTAGCATGAAT 57.982 29.630 0.00 0.00 33.57 2.57
9822 13768 5.443185 TCAAAAGAAGACAAAGCATCTGG 57.557 39.130 0.00 0.00 0.00 3.86
9823 13769 5.132502 TCAAAAGAAGACAAAGCATCTGGA 58.867 37.500 0.00 0.00 0.00 3.86
9824 13770 5.771666 TCAAAAGAAGACAAAGCATCTGGAT 59.228 36.000 0.00 0.00 0.00 3.41
9825 13771 6.266103 TCAAAAGAAGACAAAGCATCTGGATT 59.734 34.615 0.00 0.00 0.00 3.01
9826 13772 6.661304 AAAGAAGACAAAGCATCTGGATTT 57.339 33.333 0.00 0.00 34.95 2.17
9874 13820 8.831550 TGTTTTGAATTTTTATGGTTTGTAGGC 58.168 29.630 0.00 0.00 0.00 3.93
9875 13821 8.831550 GTTTTGAATTTTTATGGTTTGTAGGCA 58.168 29.630 0.00 0.00 0.00 4.75
9876 13822 7.954788 TTGAATTTTTATGGTTTGTAGGCAC 57.045 32.000 0.00 0.00 0.00 5.01
9877 13823 7.055667 TGAATTTTTATGGTTTGTAGGCACA 57.944 32.000 0.00 0.00 0.00 4.57
9878 13824 7.675062 TGAATTTTTATGGTTTGTAGGCACAT 58.325 30.769 0.00 0.00 33.76 3.21
9879 13825 7.601886 TGAATTTTTATGGTTTGTAGGCACATG 59.398 33.333 0.00 0.00 33.76 3.21
9880 13826 6.412362 TTTTTATGGTTTGTAGGCACATGT 57.588 33.333 0.00 0.00 33.76 3.21
9881 13827 5.637006 TTTATGGTTTGTAGGCACATGTC 57.363 39.130 0.00 0.00 33.76 3.06
9882 13828 2.949177 TGGTTTGTAGGCACATGTCT 57.051 45.000 0.00 0.00 33.76 3.41
9883 13829 3.222173 TGGTTTGTAGGCACATGTCTT 57.778 42.857 0.00 0.00 33.76 3.01
9884 13830 2.884012 TGGTTTGTAGGCACATGTCTTG 59.116 45.455 0.00 0.00 33.76 3.02
9885 13831 2.884639 GGTTTGTAGGCACATGTCTTGT 59.115 45.455 0.00 0.00 39.91 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.346068 ACAGGAAGTGGCTCAGAAGAC 59.654 52.381 0.00 0.00 0.00 3.01
372 393 1.533711 GCATGTGGAGGGGCTGTAT 59.466 57.895 0.00 0.00 0.00 2.29
653 675 3.569701 CCACACACACAGAAAAGGCTAAT 59.430 43.478 0.00 0.00 0.00 1.73
999 1026 2.203070 ATCGCCCTTGACGCCATC 60.203 61.111 0.00 0.00 0.00 3.51
1032 1059 7.225538 GGTGTGTTAACATGATCCAAGAGATAG 59.774 40.741 12.26 0.00 38.92 2.08
1387 1420 7.256296 CCTTTTATTCTGGTTTTCATCACCCTT 60.256 37.037 0.00 0.00 32.71 3.95
2215 2265 6.597672 ACGTATCAGCAGAAAATGGAATACAA 59.402 34.615 0.00 0.00 0.00 2.41
2222 2272 4.526970 CTGACGTATCAGCAGAAAATGG 57.473 45.455 0.00 0.00 45.83 3.16
2904 2998 5.424121 ACTTCACAAATTGCAGAGTGTAC 57.576 39.130 0.00 0.00 33.84 2.90
3348 3461 6.604396 ACATGTTAGATCCATTCAAATGCAGA 59.396 34.615 0.00 0.00 35.08 4.26
3361 3562 4.507710 TGAGTCAAGCACATGTTAGATCC 58.492 43.478 0.00 0.00 0.00 3.36
3942 4709 7.611467 AGTGCAATCCAACTTCAGATATGTTAA 59.389 33.333 0.00 0.00 0.00 2.01
4572 5566 7.282224 TCCGCTAAAAGTACAAATATGAAGCAT 59.718 33.333 0.00 0.00 0.00 3.79
4705 5700 1.216064 TCTGAGGCAATGCAGGGTAT 58.784 50.000 7.79 0.00 33.05 2.73
4871 5952 9.548631 TTTAGCTATATGCCCTTTCTACTAGAT 57.451 33.333 0.00 0.00 44.23 1.98
4958 6043 5.183014 TCACAGTTGACACTACACTACAG 57.817 43.478 0.00 0.00 0.00 2.74
5101 6196 3.347216 CAAATGACCCTACAACTCCCTG 58.653 50.000 0.00 0.00 0.00 4.45
5103 6198 2.723273 CCAAATGACCCTACAACTCCC 58.277 52.381 0.00 0.00 0.00 4.30
5175 6270 7.010923 GCATATAAACAGACTCTCAGAACCTTG 59.989 40.741 0.00 0.00 0.00 3.61
5189 6284 7.438160 CCAACGTTAGATCAGCATATAAACAGA 59.562 37.037 0.00 0.00 0.00 3.41
5561 6867 7.625828 AAATAACATACTTGGGTAAGAGTGC 57.374 36.000 0.00 0.00 37.36 4.40
5853 7258 3.451141 TCCTTGTCATGTTGTTTTGCC 57.549 42.857 0.00 0.00 0.00 4.52
6127 7535 0.872388 GCCTCCACGGTAAAACAGTG 59.128 55.000 3.72 3.72 42.61 3.66
6526 7939 5.289510 AGATGTTCCCATACCCTAAGAACT 58.710 41.667 0.00 0.00 38.10 3.01
6681 8302 6.690569 ACTGGGTATAAGGTCTGTATAAGGT 58.309 40.000 0.00 0.00 0.00 3.50
6682 8303 7.613551 AACTGGGTATAAGGTCTGTATAAGG 57.386 40.000 0.00 0.00 0.00 2.69
6683 8304 9.901172 AAAAACTGGGTATAAGGTCTGTATAAG 57.099 33.333 0.00 0.00 0.00 1.73
6684 8305 9.895138 GAAAAACTGGGTATAAGGTCTGTATAA 57.105 33.333 0.00 0.00 0.00 0.98
6685 8306 8.488668 GGAAAAACTGGGTATAAGGTCTGTATA 58.511 37.037 0.00 0.00 0.00 1.47
6686 8307 7.344134 GGAAAAACTGGGTATAAGGTCTGTAT 58.656 38.462 0.00 0.00 0.00 2.29
6687 8308 6.574859 CGGAAAAACTGGGTATAAGGTCTGTA 60.575 42.308 0.00 0.00 0.00 2.74
6688 8309 5.567430 GGAAAAACTGGGTATAAGGTCTGT 58.433 41.667 0.00 0.00 0.00 3.41
6689 8310 4.634443 CGGAAAAACTGGGTATAAGGTCTG 59.366 45.833 0.00 0.00 0.00 3.51
6690 8311 4.324022 CCGGAAAAACTGGGTATAAGGTCT 60.324 45.833 0.00 0.00 41.14 3.85
6691 8312 3.943381 CCGGAAAAACTGGGTATAAGGTC 59.057 47.826 0.00 0.00 41.14 3.85
6692 8313 3.959293 CCGGAAAAACTGGGTATAAGGT 58.041 45.455 0.00 0.00 41.14 3.50
6867 10396 7.649533 ATTCAGGATGCAGTTTATGATGAAA 57.350 32.000 0.00 0.00 34.76 2.69
7060 10591 2.497675 TGCCTAGAGCTAACTTGTGAGG 59.502 50.000 0.00 0.00 44.23 3.86
7089 10627 1.845809 GAAGTTGTGCCAGCGACCAG 61.846 60.000 0.00 0.00 0.00 4.00
7129 10674 6.384224 TGCTGCATTAAGAAAGAATTGTCAG 58.616 36.000 0.00 0.00 0.00 3.51
7276 10828 1.346046 TGGGGGATGGCTAATGTAGGT 60.346 52.381 0.00 0.00 0.00 3.08
7364 10937 9.581099 GTCAACAACTAACCCCATAAATTATTG 57.419 33.333 0.00 0.00 0.00 1.90
7375 10948 7.933215 AAAGTATATGTCAACAACTAACCCC 57.067 36.000 0.00 0.00 0.00 4.95
7434 11024 6.183360 CCACGTCATCAATCTCCTTTTCTAAC 60.183 42.308 0.00 0.00 0.00 2.34
7455 11045 0.801872 TTCCGATTTGTGCATCCACG 59.198 50.000 0.00 0.00 45.04 4.94
7531 11122 2.022195 CTAGCTGACTGGCATGCAATT 58.978 47.619 21.36 1.13 34.17 2.32
7624 11217 3.123804 CCAGTTTGATCGGATTAGGTCG 58.876 50.000 0.00 0.00 0.00 4.79
7651 11244 5.176406 GGAAACTCAGTACTACCGAAACAAC 59.824 44.000 0.00 0.00 0.00 3.32
7678 11271 4.521146 ACAGCTCAATTCCTACAGATTGG 58.479 43.478 0.00 0.00 0.00 3.16
7750 11344 4.887748 ACAGATATCGAAGAATGGCGATT 58.112 39.130 0.00 0.00 44.00 3.34
7799 11593 4.436050 GCAACAAAGTGTCGACATATCTGG 60.436 45.833 23.12 12.22 0.00 3.86
7818 11723 0.618458 TGGATCAGTGTAGGGGCAAC 59.382 55.000 0.00 0.00 0.00 4.17
7820 11725 0.982852 CCTGGATCAGTGTAGGGGCA 60.983 60.000 0.00 0.00 0.00 5.36
7851 11756 8.767478 ATTGTAAAATCAGCATTTTTCTGAGG 57.233 30.769 0.62 0.00 43.02 3.86
7912 11818 6.992664 AGAGTCCATTATTCTACATCTGCT 57.007 37.500 0.00 0.00 0.00 4.24
7996 11902 5.181622 CCTATTAGCGTTAGTGGAGAGTAGG 59.818 48.000 0.00 0.00 0.00 3.18
8009 11915 2.355412 GGGACAACCACCTATTAGCGTT 60.355 50.000 0.00 0.00 39.85 4.84
8050 11956 2.045438 CCCGTGCAGGCCATGTTA 60.045 61.111 5.01 0.00 39.21 2.41
8100 12011 1.996292 TCGATACAGCAGCAGTTCAC 58.004 50.000 0.00 0.00 0.00 3.18
8169 12080 3.367025 GTCGTTACACAGCCAATGAGTAC 59.633 47.826 0.00 0.00 35.10 2.73
8471 12399 7.435488 GGGCGTACTATATACTGCATTGAATAG 59.565 40.741 0.00 0.00 0.00 1.73
8494 12422 5.148651 ACAACTAATATGGATCGTAGGGC 57.851 43.478 0.00 0.00 0.00 5.19
8499 12427 5.880332 ACAAGCAACAACTAATATGGATCGT 59.120 36.000 0.00 0.00 0.00 3.73
8517 12445 5.339008 AAACGGATGTATCTAGACAAGCA 57.661 39.130 0.00 0.00 31.83 3.91
8521 12449 5.589855 TCGGTAAAACGGATGTATCTAGACA 59.410 40.000 0.00 0.00 0.00 3.41
8560 12488 4.771054 GTCTACAAAAGAGTACTCCCTCCA 59.229 45.833 19.38 0.32 33.88 3.86
8571 12499 6.142320 GCCAAACATTTTCGTCTACAAAAGAG 59.858 38.462 0.00 0.00 33.88 2.85
8578 12506 4.483476 ACAGCCAAACATTTTCGTCTAC 57.517 40.909 0.00 0.00 0.00 2.59
8584 12512 5.195001 TCCAAGTACAGCCAAACATTTTC 57.805 39.130 0.00 0.00 0.00 2.29
8636 12564 3.804036 TGATCCCTGCAAATTAGGTACG 58.196 45.455 0.00 0.00 33.31 3.67
8643 12571 2.367567 GCCATCATGATCCCTGCAAATT 59.632 45.455 4.86 0.00 0.00 1.82
8679 12607 2.125350 GCTGCCGCTGCTACTTCT 60.125 61.111 14.47 0.00 38.71 2.85
9066 13003 1.544825 CGAGGTCTGCCAAGAGGGAA 61.545 60.000 0.00 0.00 40.01 3.97
9067 13004 1.984570 CGAGGTCTGCCAAGAGGGA 60.985 63.158 0.00 0.00 40.01 4.20
9089 13026 4.529377 TCCTTACGAATTACTGGTGGTTCT 59.471 41.667 0.00 0.00 0.00 3.01
9133 13070 4.398044 CCGAACCCAAACTATATGCAAGTT 59.602 41.667 0.00 0.00 38.82 2.66
9178 13115 2.223923 CCAGTTGAAATTTCGGTTGCCA 60.224 45.455 13.34 0.00 0.00 4.92
9188 13125 2.038820 CCCATGGCAACCAGTTGAAATT 59.961 45.455 14.56 0.00 42.93 1.82
9204 13141 7.092716 CCAAAAACAGTATTTTCTCTCCCATG 58.907 38.462 0.00 0.00 30.31 3.66
9281 13218 6.591834 CCACGATTTCTCAGAAGTTGAAGTAT 59.408 38.462 4.18 0.00 34.81 2.12
9324 13261 3.825308 AGCAACAAATAGCACACATTCG 58.175 40.909 0.00 0.00 0.00 3.34
9330 13267 6.142818 ACTGTAAAAGCAACAAATAGCACA 57.857 33.333 0.00 0.00 0.00 4.57
9358 13295 6.769512 AGATGATAACGGCTACCAATAACAT 58.230 36.000 0.00 0.00 0.00 2.71
9427 13364 7.661040 ACAATGAAGTTAAAGACAATGGGAAG 58.339 34.615 0.00 0.00 0.00 3.46
9454 13391 3.584848 AGAAGCAGGTGAGTAGAAATGGT 59.415 43.478 0.00 0.00 0.00 3.55
9498 13435 2.351276 GGACCAGACGGCCATGTT 59.649 61.111 2.24 0.00 34.57 2.71
9522 13459 2.167900 AGTAATCACGGTAGCACCTTCC 59.832 50.000 4.21 0.00 35.66 3.46
9524 13461 4.021916 AGTAGTAATCACGGTAGCACCTT 58.978 43.478 4.21 0.00 35.66 3.50
9560 13504 3.300388 CCCCATCAGACTAGTAGCAAGA 58.700 50.000 0.00 0.00 0.00 3.02
9571 13515 3.584848 ACCTTATATCTGCCCCATCAGAC 59.415 47.826 0.00 0.00 44.88 3.51
9744 13690 9.664332 GACATCATTTATGCTAGATATGTCCTT 57.336 33.333 0.00 0.00 39.39 3.36
9745 13691 8.819845 TGACATCATTTATGCTAGATATGTCCT 58.180 33.333 0.00 0.00 40.63 3.85
9746 13692 9.440773 TTGACATCATTTATGCTAGATATGTCC 57.559 33.333 0.00 0.00 40.63 4.02
9753 13699 9.671279 TCTTCTTTTGACATCATTTATGCTAGA 57.329 29.630 0.00 0.00 39.39 2.43
9754 13700 9.713740 GTCTTCTTTTGACATCATTTATGCTAG 57.286 33.333 0.00 0.00 39.39 3.42
9755 13701 9.230122 TGTCTTCTTTTGACATCATTTATGCTA 57.770 29.630 0.00 0.00 39.23 3.49
9756 13702 8.114331 TGTCTTCTTTTGACATCATTTATGCT 57.886 30.769 0.00 0.00 39.23 3.79
9757 13703 8.746922 TTGTCTTCTTTTGACATCATTTATGC 57.253 30.769 0.00 0.00 42.95 3.14
9763 13709 8.457261 GCTAGATTTGTCTTCTTTTGACATCAT 58.543 33.333 0.00 0.00 42.95 2.45
9764 13710 7.445096 TGCTAGATTTGTCTTCTTTTGACATCA 59.555 33.333 0.00 0.00 42.95 3.07
9765 13711 7.810658 TGCTAGATTTGTCTTCTTTTGACATC 58.189 34.615 0.00 0.00 42.95 3.06
9766 13712 7.750229 TGCTAGATTTGTCTTCTTTTGACAT 57.250 32.000 0.00 0.00 42.95 3.06
9767 13713 7.445096 TCATGCTAGATTTGTCTTCTTTTGACA 59.555 33.333 0.00 0.00 41.94 3.58
9768 13714 7.810658 TCATGCTAGATTTGTCTTCTTTTGAC 58.189 34.615 0.00 0.00 35.21 3.18
9769 13715 7.984422 TCATGCTAGATTTGTCTTCTTTTGA 57.016 32.000 0.00 0.00 0.00 2.69
9806 13752 5.382618 ACAAATCCAGATGCTTTGTCTTC 57.617 39.130 6.14 0.00 38.38 2.87
9809 13755 6.849588 AAAAACAAATCCAGATGCTTTGTC 57.150 33.333 10.33 0.00 41.03 3.18
9848 13794 8.831550 GCCTACAAACCATAAAAATTCAAAACA 58.168 29.630 0.00 0.00 0.00 2.83
9849 13795 8.831550 TGCCTACAAACCATAAAAATTCAAAAC 58.168 29.630 0.00 0.00 0.00 2.43
9850 13796 8.831550 GTGCCTACAAACCATAAAAATTCAAAA 58.168 29.630 0.00 0.00 0.00 2.44
9851 13797 7.987458 TGTGCCTACAAACCATAAAAATTCAAA 59.013 29.630 0.00 0.00 32.88 2.69
9852 13798 7.500992 TGTGCCTACAAACCATAAAAATTCAA 58.499 30.769 0.00 0.00 32.88 2.69
9853 13799 7.055667 TGTGCCTACAAACCATAAAAATTCA 57.944 32.000 0.00 0.00 32.88 2.57
9854 13800 7.602265 ACATGTGCCTACAAACCATAAAAATTC 59.398 33.333 0.00 0.00 40.84 2.17
9855 13801 7.449247 ACATGTGCCTACAAACCATAAAAATT 58.551 30.769 0.00 0.00 40.84 1.82
9856 13802 7.003402 ACATGTGCCTACAAACCATAAAAAT 57.997 32.000 0.00 0.00 40.84 1.82
9857 13803 6.266558 AGACATGTGCCTACAAACCATAAAAA 59.733 34.615 1.15 0.00 40.84 1.94
9858 13804 5.772672 AGACATGTGCCTACAAACCATAAAA 59.227 36.000 1.15 0.00 40.84 1.52
9859 13805 5.321102 AGACATGTGCCTACAAACCATAAA 58.679 37.500 1.15 0.00 40.84 1.40
9860 13806 4.917385 AGACATGTGCCTACAAACCATAA 58.083 39.130 1.15 0.00 40.84 1.90
9861 13807 4.568072 AGACATGTGCCTACAAACCATA 57.432 40.909 1.15 0.00 40.84 2.74
9862 13808 3.439857 AGACATGTGCCTACAAACCAT 57.560 42.857 1.15 0.00 40.84 3.55
9863 13809 2.884012 CAAGACATGTGCCTACAAACCA 59.116 45.455 1.15 0.00 40.84 3.67
9864 13810 2.884639 ACAAGACATGTGCCTACAAACC 59.115 45.455 1.15 0.00 41.93 3.27
9904 13850 9.746711 CACATTTAAATGTTTCAAAACGTTCAA 57.253 25.926 27.33 9.39 46.95 2.69
9905 13851 9.140286 TCACATTTAAATGTTTCAAAACGTTCA 57.860 25.926 27.33 0.00 46.95 3.18
9906 13852 9.403869 GTCACATTTAAATGTTTCAAAACGTTC 57.596 29.630 27.33 10.40 46.95 3.95
9907 13853 9.145865 AGTCACATTTAAATGTTTCAAAACGTT 57.854 25.926 27.33 7.15 46.95 3.99
9908 13854 8.696410 AGTCACATTTAAATGTTTCAAAACGT 57.304 26.923 27.33 3.31 46.95 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.