Multiple sequence alignment - TraesCS1A01G248200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G248200 chr1A 100.000 5070 0 0 1 5070 440188095 440183026 0.000000e+00 9363.0
1 TraesCS1A01G248200 chr1B 92.072 2157 110 22 2256 4369 456186977 456184839 0.000000e+00 2979.0
2 TraesCS1A01G248200 chr1B 91.602 1548 79 25 635 2147 456188498 456186967 0.000000e+00 2091.0
3 TraesCS1A01G248200 chr1B 92.149 484 31 6 4464 4943 456184780 456184300 0.000000e+00 676.0
4 TraesCS1A01G248200 chr1B 88.599 307 35 0 160 466 456192305 456191999 1.720000e-99 374.0
5 TraesCS1A01G248200 chr1B 94.000 50 3 0 5019 5068 533986732 533986781 5.440000e-10 76.8
6 TraesCS1A01G248200 chr1B 96.875 32 0 1 608 638 530888773 530888804 9.000000e-03 52.8
7 TraesCS1A01G248200 chr1D 91.789 2180 104 19 2807 4943 340559146 340556999 0.000000e+00 2964.0
8 TraesCS1A01G248200 chr1D 93.241 1080 56 13 1665 2738 340560526 340559458 0.000000e+00 1574.0
9 TraesCS1A01G248200 chr1D 91.782 937 44 19 749 1672 340562602 340561686 0.000000e+00 1273.0
10 TraesCS1A01G248200 chr1D 96.023 176 7 0 174 349 340564864 340564689 2.310000e-73 287.0
11 TraesCS1A01G248200 chr3D 93.197 147 10 0 1 147 225922603 225922749 3.070000e-52 217.0
12 TraesCS1A01G248200 chr2D 93.197 147 10 0 1 147 422482120 422482266 3.070000e-52 217.0
13 TraesCS1A01G248200 chr2D 94.118 51 3 0 5019 5069 340511642 340511592 1.510000e-10 78.7
14 TraesCS1A01G248200 chr6B 93.103 145 10 0 3 147 153489242 153489098 3.980000e-51 213.0
15 TraesCS1A01G248200 chr6B 84.951 206 24 5 4523 4723 115337541 115337744 8.610000e-48 202.0
16 TraesCS1A01G248200 chr6B 84.541 207 25 5 4522 4723 115103878 115104082 1.110000e-46 198.0
17 TraesCS1A01G248200 chr6B 84.541 207 25 5 4522 4723 115338365 115338569 1.110000e-46 198.0
18 TraesCS1A01G248200 chr6B 84.058 207 26 6 4522 4723 115086109 115086313 5.180000e-45 193.0
19 TraesCS1A01G248200 chr6B 84.314 204 22 8 4523 4718 115699222 115699423 1.860000e-44 191.0
20 TraesCS1A01G248200 chr6B 83.981 206 23 7 4521 4718 115095627 115095830 6.700000e-44 189.0
21 TraesCS1A01G248200 chr6B 83.575 207 27 6 4522 4723 115295273 115295477 2.410000e-43 187.0
22 TraesCS1A01G248200 chr6B 100.000 29 0 0 608 636 716771905 716771877 3.000000e-03 54.7
23 TraesCS1A01G248200 chr6D 92.517 147 11 0 1 147 71634975 71635121 1.430000e-50 211.0
24 TraesCS1A01G248200 chr6D 92.517 147 11 0 1 147 146638866 146639012 1.430000e-50 211.0
25 TraesCS1A01G248200 chr6D 92.517 147 11 0 1 147 166791455 166791309 1.430000e-50 211.0
26 TraesCS1A01G248200 chr6D 92.517 147 11 0 1 147 202819985 202820131 1.430000e-50 211.0
27 TraesCS1A01G248200 chr6D 92.517 147 11 0 1 147 224974849 224974995 1.430000e-50 211.0
28 TraesCS1A01G248200 chr4D 92.517 147 11 0 1 147 138421081 138421227 1.430000e-50 211.0
29 TraesCS1A01G248200 chr7D 94.118 51 2 1 5019 5069 477857548 477857597 5.440000e-10 76.8
30 TraesCS1A01G248200 chr7D 92.157 51 3 1 5019 5069 566026743 566026694 2.530000e-08 71.3
31 TraesCS1A01G248200 chr7A 92.308 52 2 2 5019 5070 337926091 337926042 7.040000e-09 73.1
32 TraesCS1A01G248200 chr5D 93.878 49 2 1 5021 5069 324659661 324659614 7.040000e-09 73.1
33 TraesCS1A01G248200 chr5D 93.878 49 2 1 5021 5069 370167734 370167781 7.040000e-09 73.1
34 TraesCS1A01G248200 chr5D 93.617 47 2 1 5023 5069 472642525 472642480 9.110000e-08 69.4
35 TraesCS1A01G248200 chr5B 93.878 49 2 1 5021 5069 439424283 439424330 7.040000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G248200 chr1A 440183026 440188095 5069 True 9363.0 9363 100.00000 1 5070 1 chr1A.!!$R1 5069
1 TraesCS1A01G248200 chr1B 456184300 456192305 8005 True 1530.0 2979 91.10550 160 4943 4 chr1B.!!$R1 4783
2 TraesCS1A01G248200 chr1D 340556999 340564864 7865 True 1524.5 2964 93.20875 174 4943 4 chr1D.!!$R1 4769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.026803 GAACGATGCTTGATGACGCC 59.973 55.0 0.00 0.00 0.00 5.68 F
153 154 0.027194 CGATGCTTGATGACGCCTTG 59.973 55.0 0.00 0.00 0.00 3.61 F
166 167 0.249405 CGCCTTGTTTGTTGTGGCAT 60.249 50.0 0.00 0.00 43.38 4.40 F
1480 5585 0.322975 TGAAGAAGAGCTGCAGTCCC 59.677 55.0 16.64 4.82 0.00 4.46 F
1972 7255 0.394192 TCACCTGGCTCACTGTCTTG 59.606 55.0 0.00 0.00 0.00 3.02 F
2814 8340 0.695347 AGGAGAAAAGGTCAGCCCTG 59.305 55.0 0.00 0.00 45.47 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1325 5414 0.249120 ATCCGCATCCTGTTCGACAA 59.751 50.000 0.00 0.00 0.00 3.18 R
1462 5567 0.322975 TGGGACTGCAGCTCTTCTTC 59.677 55.000 15.27 1.14 0.00 2.87 R
1952 7235 1.002888 CAAGACAGTGAGCCAGGTGAT 59.997 52.381 0.00 0.00 0.00 3.06 R
2633 7916 0.243636 GCATTGTAACCCACAGCCAC 59.756 55.000 0.00 0.00 38.72 5.01 R
3793 9321 0.596082 CGAATTTCACCGGCCAACTT 59.404 50.000 0.00 0.00 0.00 2.66 R
4262 9798 0.172578 TCACCATTGGCGTACTCTCG 59.827 55.000 1.54 0.00 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.921126 GAGTTCAAGAACGCCAATGTG 58.079 47.619 7.25 0.00 45.50 3.21
22 23 1.608590 AGTTCAAGAACGCCAATGTGG 59.391 47.619 7.25 0.00 45.50 4.17
23 24 1.606668 GTTCAAGAACGCCAATGTGGA 59.393 47.619 0.00 0.00 40.96 4.02
24 25 2.198827 TCAAGAACGCCAATGTGGAT 57.801 45.000 0.00 0.00 40.96 3.41
25 26 3.342377 TCAAGAACGCCAATGTGGATA 57.658 42.857 0.00 0.00 40.96 2.59
26 27 3.006940 TCAAGAACGCCAATGTGGATAC 58.993 45.455 0.00 0.00 40.96 2.24
27 28 2.038387 AGAACGCCAATGTGGATACC 57.962 50.000 0.00 0.00 40.96 2.73
28 29 1.559682 AGAACGCCAATGTGGATACCT 59.440 47.619 0.00 0.00 40.96 3.08
29 30 2.026262 AGAACGCCAATGTGGATACCTT 60.026 45.455 0.00 0.00 40.96 3.50
30 31 2.507407 ACGCCAATGTGGATACCTTT 57.493 45.000 0.00 0.00 40.96 3.11
31 32 2.365582 ACGCCAATGTGGATACCTTTC 58.634 47.619 0.00 0.00 40.96 2.62
32 33 2.026262 ACGCCAATGTGGATACCTTTCT 60.026 45.455 0.00 0.00 40.96 2.52
33 34 2.614057 CGCCAATGTGGATACCTTTCTC 59.386 50.000 0.00 0.00 40.96 2.87
34 35 2.614057 GCCAATGTGGATACCTTTCTCG 59.386 50.000 0.00 0.00 40.96 4.04
35 36 3.206150 CCAATGTGGATACCTTTCTCGG 58.794 50.000 0.00 0.00 40.96 4.63
36 37 2.614057 CAATGTGGATACCTTTCTCGGC 59.386 50.000 0.00 0.00 0.00 5.54
37 38 0.174845 TGTGGATACCTTTCTCGGCG 59.825 55.000 0.00 0.00 0.00 6.46
38 39 0.458669 GTGGATACCTTTCTCGGCGA 59.541 55.000 10.14 10.14 0.00 5.54
39 40 1.134907 GTGGATACCTTTCTCGGCGAA 60.135 52.381 12.13 0.00 0.00 4.70
40 41 1.136305 TGGATACCTTTCTCGGCGAAG 59.864 52.381 12.13 5.47 32.21 3.79
41 42 1.407979 GGATACCTTTCTCGGCGAAGA 59.592 52.381 12.13 8.02 32.21 2.87
42 43 2.159142 GGATACCTTTCTCGGCGAAGAA 60.159 50.000 12.13 13.76 33.50 2.52
43 44 2.649331 TACCTTTCTCGGCGAAGAAG 57.351 50.000 12.13 16.71 36.66 2.85
44 45 0.037232 ACCTTTCTCGGCGAAGAAGG 60.037 55.000 32.37 32.37 36.66 3.46
45 46 0.741221 CCTTTCTCGGCGAAGAAGGG 60.741 60.000 29.23 26.67 43.50 3.95
46 47 0.246635 CTTTCTCGGCGAAGAAGGGA 59.753 55.000 12.13 0.00 36.66 4.20
47 48 0.902531 TTTCTCGGCGAAGAAGGGAT 59.097 50.000 12.13 0.00 36.66 3.85
48 49 0.902531 TTCTCGGCGAAGAAGGGATT 59.097 50.000 12.13 0.00 31.71 3.01
49 50 0.902531 TCTCGGCGAAGAAGGGATTT 59.097 50.000 12.13 0.00 0.00 2.17
50 51 1.134788 TCTCGGCGAAGAAGGGATTTC 60.135 52.381 12.13 0.00 35.97 2.17
51 52 0.611200 TCGGCGAAGAAGGGATTTCA 59.389 50.000 7.35 0.00 38.31 2.69
52 53 0.727398 CGGCGAAGAAGGGATTTCAC 59.273 55.000 0.00 0.00 38.31 3.18
53 54 1.821216 GGCGAAGAAGGGATTTCACA 58.179 50.000 0.00 0.00 38.31 3.58
54 55 2.369394 GGCGAAGAAGGGATTTCACAT 58.631 47.619 0.00 0.00 38.31 3.21
55 56 2.098117 GGCGAAGAAGGGATTTCACATG 59.902 50.000 0.00 0.00 38.31 3.21
56 57 3.009723 GCGAAGAAGGGATTTCACATGA 58.990 45.455 0.00 0.00 38.31 3.07
57 58 3.064545 GCGAAGAAGGGATTTCACATGAG 59.935 47.826 0.00 0.00 38.31 2.90
58 59 4.256920 CGAAGAAGGGATTTCACATGAGT 58.743 43.478 0.00 0.00 38.31 3.41
59 60 4.697352 CGAAGAAGGGATTTCACATGAGTT 59.303 41.667 0.00 0.00 38.31 3.01
60 61 5.163814 CGAAGAAGGGATTTCACATGAGTTC 60.164 44.000 0.00 0.00 38.31 3.01
61 62 5.511386 AGAAGGGATTTCACATGAGTTCT 57.489 39.130 0.00 0.00 38.31 3.01
62 63 5.495640 AGAAGGGATTTCACATGAGTTCTC 58.504 41.667 0.00 0.00 38.31 2.87
63 64 3.866651 AGGGATTTCACATGAGTTCTCG 58.133 45.455 0.00 0.00 0.00 4.04
64 65 3.515502 AGGGATTTCACATGAGTTCTCGA 59.484 43.478 0.00 0.00 0.00 4.04
65 66 3.619038 GGGATTTCACATGAGTTCTCGAC 59.381 47.826 0.00 0.00 0.00 4.20
66 67 4.499183 GGATTTCACATGAGTTCTCGACT 58.501 43.478 0.00 0.00 42.70 4.18
67 68 5.394224 GGGATTTCACATGAGTTCTCGACTA 60.394 44.000 0.00 0.00 39.19 2.59
68 69 5.517054 GGATTTCACATGAGTTCTCGACTAC 59.483 44.000 0.00 0.00 39.19 2.73
69 70 3.741805 TCACATGAGTTCTCGACTACG 57.258 47.619 0.00 0.00 39.19 3.51
70 71 3.072211 TCACATGAGTTCTCGACTACGT 58.928 45.455 0.00 0.00 39.19 3.57
71 72 3.120304 TCACATGAGTTCTCGACTACGTG 60.120 47.826 0.00 0.00 39.19 4.49
72 73 2.177977 CATGAGTTCTCGACTACGTGC 58.822 52.381 0.00 0.00 39.19 5.34
73 74 1.232119 TGAGTTCTCGACTACGTGCA 58.768 50.000 0.00 0.00 39.19 4.57
74 75 1.069432 TGAGTTCTCGACTACGTGCAC 60.069 52.381 6.82 6.82 39.19 4.57
75 76 0.949397 AGTTCTCGACTACGTGCACA 59.051 50.000 18.64 0.00 36.65 4.57
76 77 1.050767 GTTCTCGACTACGTGCACAC 58.949 55.000 18.64 0.00 40.69 3.82
77 78 0.039798 TTCTCGACTACGTGCACACC 60.040 55.000 18.64 0.00 40.69 4.16
78 79 0.887836 TCTCGACTACGTGCACACCT 60.888 55.000 18.64 0.41 40.69 4.00
79 80 0.039437 CTCGACTACGTGCACACCTT 60.039 55.000 18.64 0.00 40.69 3.50
80 81 1.198408 CTCGACTACGTGCACACCTTA 59.802 52.381 18.64 1.08 40.69 2.69
81 82 1.608109 TCGACTACGTGCACACCTTAA 59.392 47.619 18.64 0.00 40.69 1.85
82 83 2.229543 TCGACTACGTGCACACCTTAAT 59.770 45.455 18.64 0.00 40.69 1.40
83 84 3.439825 TCGACTACGTGCACACCTTAATA 59.560 43.478 18.64 0.00 40.69 0.98
84 85 4.082841 TCGACTACGTGCACACCTTAATAA 60.083 41.667 18.64 0.00 40.69 1.40
85 86 4.622313 CGACTACGTGCACACCTTAATAAA 59.378 41.667 18.64 0.00 34.56 1.40
86 87 5.118971 CGACTACGTGCACACCTTAATAAAA 59.881 40.000 18.64 0.00 34.56 1.52
87 88 6.183360 CGACTACGTGCACACCTTAATAAAAT 60.183 38.462 18.64 0.00 34.56 1.82
88 89 7.009448 CGACTACGTGCACACCTTAATAAAATA 59.991 37.037 18.64 0.00 34.56 1.40
89 90 8.193250 ACTACGTGCACACCTTAATAAAATAG 57.807 34.615 18.64 0.00 0.00 1.73
90 91 8.036575 ACTACGTGCACACCTTAATAAAATAGA 58.963 33.333 18.64 0.00 0.00 1.98
91 92 7.303634 ACGTGCACACCTTAATAAAATAGAG 57.696 36.000 18.64 0.00 0.00 2.43
92 93 6.877322 ACGTGCACACCTTAATAAAATAGAGT 59.123 34.615 18.64 0.00 0.00 3.24
93 94 7.389607 ACGTGCACACCTTAATAAAATAGAGTT 59.610 33.333 18.64 0.00 0.00 3.01
94 95 7.692291 CGTGCACACCTTAATAAAATAGAGTTG 59.308 37.037 18.64 0.00 0.00 3.16
95 96 8.512138 GTGCACACCTTAATAAAATAGAGTTGT 58.488 33.333 13.17 0.00 0.00 3.32
96 97 9.073475 TGCACACCTTAATAAAATAGAGTTGTT 57.927 29.630 0.00 0.00 0.00 2.83
97 98 9.341899 GCACACCTTAATAAAATAGAGTTGTTG 57.658 33.333 0.00 0.00 0.00 3.33
126 127 5.880054 AAAACCGGACACTTATTGAGATG 57.120 39.130 9.46 0.00 0.00 2.90
127 128 3.543680 ACCGGACACTTATTGAGATGG 57.456 47.619 9.46 0.00 0.00 3.51
128 129 2.213499 CCGGACACTTATTGAGATGGC 58.787 52.381 0.00 0.00 0.00 4.40
129 130 1.860950 CGGACACTTATTGAGATGGCG 59.139 52.381 0.00 0.00 0.00 5.69
130 131 2.481276 CGGACACTTATTGAGATGGCGA 60.481 50.000 0.00 0.00 0.00 5.54
131 132 3.126831 GGACACTTATTGAGATGGCGAG 58.873 50.000 0.00 0.00 0.00 5.03
132 133 3.181475 GGACACTTATTGAGATGGCGAGA 60.181 47.826 0.00 0.00 0.00 4.04
133 134 4.433615 GACACTTATTGAGATGGCGAGAA 58.566 43.478 0.00 0.00 0.00 2.87
134 135 4.184629 ACACTTATTGAGATGGCGAGAAC 58.815 43.478 0.00 0.00 0.00 3.01
135 136 3.243877 CACTTATTGAGATGGCGAGAACG 59.756 47.826 0.00 0.00 42.93 3.95
136 137 3.130516 ACTTATTGAGATGGCGAGAACGA 59.869 43.478 0.00 0.00 42.66 3.85
137 138 2.898729 ATTGAGATGGCGAGAACGAT 57.101 45.000 0.00 0.00 42.66 3.73
138 139 1.926561 TTGAGATGGCGAGAACGATG 58.073 50.000 0.00 0.00 42.66 3.84
139 140 0.528466 TGAGATGGCGAGAACGATGC 60.528 55.000 0.00 0.00 42.66 3.91
140 141 0.249238 GAGATGGCGAGAACGATGCT 60.249 55.000 0.00 0.00 42.66 3.79
141 142 0.176680 AGATGGCGAGAACGATGCTT 59.823 50.000 0.00 0.00 42.66 3.91
142 143 0.302890 GATGGCGAGAACGATGCTTG 59.697 55.000 0.00 0.00 42.66 4.01
143 144 0.108186 ATGGCGAGAACGATGCTTGA 60.108 50.000 0.00 0.00 42.66 3.02
144 145 0.108186 TGGCGAGAACGATGCTTGAT 60.108 50.000 0.00 0.00 42.66 2.57
145 146 0.302890 GGCGAGAACGATGCTTGATG 59.697 55.000 0.00 0.00 42.66 3.07
146 147 1.280982 GCGAGAACGATGCTTGATGA 58.719 50.000 0.00 0.00 42.66 2.92
147 148 1.005557 GCGAGAACGATGCTTGATGAC 60.006 52.381 0.00 0.00 42.66 3.06
148 149 1.253800 CGAGAACGATGCTTGATGACG 59.746 52.381 0.00 0.00 42.66 4.35
149 150 1.002366 AGAACGATGCTTGATGACGC 58.998 50.000 0.00 0.00 0.00 5.19
150 151 0.026803 GAACGATGCTTGATGACGCC 59.973 55.000 0.00 0.00 0.00 5.68
151 152 0.391661 AACGATGCTTGATGACGCCT 60.392 50.000 0.00 0.00 0.00 5.52
152 153 0.391661 ACGATGCTTGATGACGCCTT 60.392 50.000 0.00 0.00 0.00 4.35
153 154 0.027194 CGATGCTTGATGACGCCTTG 59.973 55.000 0.00 0.00 0.00 3.61
154 155 1.089920 GATGCTTGATGACGCCTTGT 58.910 50.000 0.00 0.00 0.00 3.16
155 156 1.470098 GATGCTTGATGACGCCTTGTT 59.530 47.619 0.00 0.00 0.00 2.83
156 157 1.317613 TGCTTGATGACGCCTTGTTT 58.682 45.000 0.00 0.00 0.00 2.83
157 158 1.001487 TGCTTGATGACGCCTTGTTTG 60.001 47.619 0.00 0.00 0.00 2.93
158 159 1.001378 GCTTGATGACGCCTTGTTTGT 60.001 47.619 0.00 0.00 0.00 2.83
166 167 0.249405 CGCCTTGTTTGTTGTGGCAT 60.249 50.000 0.00 0.00 43.38 4.40
170 171 2.159128 CCTTGTTTGTTGTGGCATGACA 60.159 45.455 0.00 0.00 0.00 3.58
282 283 3.324556 GCCTCTCTTCAGATATGCCTTCT 59.675 47.826 0.00 0.00 0.00 2.85
298 299 2.432444 CTTCTCTCTCTGGTGTCGACT 58.568 52.381 17.92 0.00 0.00 4.18
314 315 7.123098 TGGTGTCGACTAGGTTTAAGAATATGA 59.877 37.037 17.92 0.00 0.00 2.15
396 1097 2.528743 CGCGAGTGCCATGGATGAC 61.529 63.158 18.40 8.45 38.08 3.06
401 1102 0.901827 AGTGCCATGGATGACGTACA 59.098 50.000 18.40 0.00 0.00 2.90
455 1156 4.997395 GCTCAGTCATGTTTAGTTTCTCCA 59.003 41.667 0.00 0.00 0.00 3.86
457 1158 6.174720 TCAGTCATGTTTAGTTTCTCCAGT 57.825 37.500 0.00 0.00 0.00 4.00
501 1202 4.417426 TGGTGACCTATTTTAGCTAGGC 57.583 45.455 2.11 0.00 39.57 3.93
508 1209 5.598769 ACCTATTTTAGCTAGGCGTAGTTG 58.401 41.667 14.52 0.00 39.57 3.16
519 1220 1.508632 GCGTAGTTGCTTTGTCCAGA 58.491 50.000 0.00 0.00 0.00 3.86
526 1227 5.343307 AGTTGCTTTGTCCAGATTTTTGT 57.657 34.783 0.00 0.00 0.00 2.83
534 1235 3.316868 TGTCCAGATTTTTGTCCGGTTTC 59.683 43.478 0.00 0.00 0.00 2.78
540 1241 2.740506 TTTTGTCCGGTTTCCCTCTT 57.259 45.000 0.00 0.00 0.00 2.85
542 1243 3.860968 TTTGTCCGGTTTCCCTCTTTA 57.139 42.857 0.00 0.00 0.00 1.85
543 1244 3.412237 TTGTCCGGTTTCCCTCTTTAG 57.588 47.619 0.00 0.00 0.00 1.85
560 1264 2.835701 TAGCAAGCAGTTCTCGCCGG 62.836 60.000 0.00 0.00 0.00 6.13
561 1265 2.357517 CAAGCAGTTCTCGCCGGT 60.358 61.111 1.90 0.00 0.00 5.28
590 1962 5.264395 ACTTCTTCCATCCCCAAATAAGTG 58.736 41.667 0.00 0.00 0.00 3.16
731 4807 1.298859 ACGAGGCGAAACATTGCTCC 61.299 55.000 0.00 0.00 0.00 4.70
737 4813 0.721718 CGAAACATTGCTCCGGAGTC 59.278 55.000 31.43 23.14 0.00 3.36
758 4834 1.135315 CTGGAAGTTTCGCGGCATG 59.865 57.895 6.13 0.00 0.00 4.06
785 4861 3.120649 CGACCGAAGAAAGAAACACATCC 60.121 47.826 0.00 0.00 0.00 3.51
786 4862 3.813166 GACCGAAGAAAGAAACACATCCA 59.187 43.478 0.00 0.00 0.00 3.41
787 4863 4.398319 ACCGAAGAAAGAAACACATCCAT 58.602 39.130 0.00 0.00 0.00 3.41
788 4864 4.455877 ACCGAAGAAAGAAACACATCCATC 59.544 41.667 0.00 0.00 0.00 3.51
822 4898 2.211353 AACTAGAGATTTCGAGCGCC 57.789 50.000 2.29 0.00 30.00 6.53
843 4921 5.122519 GCCAGAGAGAAGAAAAGAATAGGG 58.877 45.833 0.00 0.00 0.00 3.53
908 4989 1.369625 CCAGTCAGTATTCGGTTGGC 58.630 55.000 0.00 0.00 0.00 4.52
921 5002 3.503839 TTGGCGGTCCCCCAGTTT 61.504 61.111 0.00 0.00 33.13 2.66
1268 5350 7.878127 TGGAAAACCAACATTTGTTTTCTGTTA 59.122 29.630 22.89 11.66 38.79 2.41
1325 5414 6.732896 ATGTTCCGAGTACTGATTATCCTT 57.267 37.500 0.00 0.00 0.00 3.36
1376 5465 3.754850 GTGGTTTCCGGTAGTATTTTGCT 59.245 43.478 0.00 0.00 0.00 3.91
1398 5488 5.766670 GCTTAGGGTTTGTAGTGTAAAAGGT 59.233 40.000 0.00 0.00 0.00 3.50
1402 5492 3.570975 GGTTTGTAGTGTAAAAGGTGGGG 59.429 47.826 0.00 0.00 0.00 4.96
1417 5516 3.637273 GGGTGGAGTGGCGGAAGT 61.637 66.667 0.00 0.00 0.00 3.01
1434 5533 2.913603 AGTGGGTAGGCTAGTGTGTA 57.086 50.000 0.00 0.00 0.00 2.90
1462 5567 2.036992 GGACTGGGTGCTAGATGAGATG 59.963 54.545 0.00 0.00 0.00 2.90
1480 5585 0.322975 TGAAGAAGAGCTGCAGTCCC 59.677 55.000 16.64 4.82 0.00 4.46
1551 5656 3.135167 ACTGGTAGAAAGACCGTTCCAAA 59.865 43.478 0.00 0.00 42.99 3.28
1554 5659 4.070009 GGTAGAAAGACCGTTCCAAATGT 58.930 43.478 0.00 0.00 0.00 2.71
1555 5660 5.221682 TGGTAGAAAGACCGTTCCAAATGTA 60.222 40.000 0.00 0.00 42.99 2.29
1556 5661 5.702209 GGTAGAAAGACCGTTCCAAATGTAA 59.298 40.000 0.00 0.00 0.00 2.41
1557 5662 6.373495 GGTAGAAAGACCGTTCCAAATGTAAT 59.627 38.462 0.00 0.00 0.00 1.89
1591 5696 2.368221 GGACAGAATCTCCTATGCAGCT 59.632 50.000 0.00 0.00 0.00 4.24
1638 5743 0.682852 TAACACCCTTCCTGACACGG 59.317 55.000 0.00 0.00 0.00 4.94
1672 5777 0.610174 TCGATGTCTTCCTTGCAGCT 59.390 50.000 0.00 0.00 0.00 4.24
1800 7080 2.087646 GACAAGATGAAGAACCCTGGC 58.912 52.381 0.00 0.00 0.00 4.85
1829 7109 7.875327 TTTTATTCTATGCCACCCTTAAGAC 57.125 36.000 3.36 0.00 0.00 3.01
1846 7126 9.516546 CCCTTAAGACTATTTGAACCTTAACTT 57.483 33.333 3.36 0.00 0.00 2.66
1896 7179 2.572104 GGGTGTCACCAGTTCCTAATCT 59.428 50.000 23.48 0.00 41.02 2.40
1938 7221 4.467082 ACAGGATAATTTTGCATCAAGGCA 59.533 37.500 0.00 0.00 43.19 4.75
1949 7232 1.283029 CATCAAGGCAGAGGGGAAAGA 59.717 52.381 0.00 0.00 0.00 2.52
1952 7235 1.909302 CAAGGCAGAGGGGAAAGAGTA 59.091 52.381 0.00 0.00 0.00 2.59
1962 7245 1.840635 GGGAAAGAGTATCACCTGGCT 59.159 52.381 0.00 0.00 37.82 4.75
1966 7249 2.541233 AGAGTATCACCTGGCTCACT 57.459 50.000 0.00 0.00 37.82 3.41
1972 7255 0.394192 TCACCTGGCTCACTGTCTTG 59.606 55.000 0.00 0.00 0.00 3.02
2025 7308 9.807649 GATCAAATATTCCTAAAATGCAACTGT 57.192 29.630 0.00 0.00 0.00 3.55
2072 7355 7.140048 CCTAAGTTATAAGTCTGCGTTCTAGG 58.860 42.308 0.00 0.00 0.00 3.02
2201 7484 3.077359 TGCTTGGTTGGTTTTGTTTTGG 58.923 40.909 0.00 0.00 0.00 3.28
2254 7537 4.752146 AGTTCTTGTACCTTACCGCATAC 58.248 43.478 0.00 0.00 0.00 2.39
2294 7577 5.206905 AGCCCCTAAAATGTAGAAATGGT 57.793 39.130 0.00 0.00 0.00 3.55
2296 7579 6.737608 AGCCCCTAAAATGTAGAAATGGTTA 58.262 36.000 0.00 0.00 0.00 2.85
2300 7583 8.850156 CCCCTAAAATGTAGAAATGGTTATGAG 58.150 37.037 0.00 0.00 0.00 2.90
2301 7584 8.850156 CCCTAAAATGTAGAAATGGTTATGAGG 58.150 37.037 0.00 0.00 0.00 3.86
2325 7608 9.914131 AGGAACATTTTAAATCAGTAGAAAAGC 57.086 29.630 0.00 0.00 0.00 3.51
2386 7669 3.057596 CGTTGGACATTTAGTGCCACATT 60.058 43.478 0.00 0.00 37.86 2.71
2417 7700 2.975732 CATGAGCTGGAGCAGACTTA 57.024 50.000 0.00 0.00 45.16 2.24
2435 7718 8.154856 GCAGACTTATAACTTGGGTCCATATAA 58.845 37.037 0.00 0.00 0.00 0.98
2526 7809 9.878599 AAGAAATTTTATATGATTTCGTAGGCG 57.121 29.630 12.18 0.00 43.56 5.52
2527 7810 9.268268 AGAAATTTTATATGATTTCGTAGGCGA 57.732 29.630 12.18 0.00 43.56 5.54
2591 7874 9.494271 TCATTTGATAGATGTAGTTAGCAATCC 57.506 33.333 0.00 0.00 0.00 3.01
2620 7903 1.714541 AATTTGGTCCATGTGCCACA 58.285 45.000 0.00 0.00 34.02 4.17
2635 7918 4.639755 TGTGCCACATGGTCATATTTAGTG 59.360 41.667 0.00 0.00 37.57 2.74
2642 7925 3.884895 TGGTCATATTTAGTGGCTGTGG 58.115 45.455 0.00 0.00 0.00 4.17
2655 7938 1.586154 GCTGTGGGTTACAATGCGCT 61.586 55.000 9.73 0.00 39.20 5.92
2698 7981 4.717991 CGCGACAAAATTTTCATGTCCTA 58.282 39.130 0.00 0.00 40.20 2.94
2742 8051 2.034687 CCACTGGTGAGCCAAGGG 59.965 66.667 1.93 0.00 45.51 3.95
2756 8065 2.234661 GCCAAGGGGAATTTTGAGGAAG 59.765 50.000 0.00 0.00 35.59 3.46
2759 8068 4.151883 CAAGGGGAATTTTGAGGAAGACA 58.848 43.478 0.00 0.00 0.00 3.41
2763 8072 4.528206 GGGGAATTTTGAGGAAGACAATGT 59.472 41.667 0.00 0.00 0.00 2.71
2772 8081 2.975489 AGGAAGACAATGTGGAGTGAGT 59.025 45.455 0.00 0.00 0.00 3.41
2796 8105 1.004862 GGTGGAGGGGAGGAAAGAAAG 59.995 57.143 0.00 0.00 0.00 2.62
2803 8112 3.727391 AGGGGAGGAAAGAAAGGAGAAAA 59.273 43.478 0.00 0.00 0.00 2.29
2814 8340 0.695347 AGGAGAAAAGGTCAGCCCTG 59.305 55.000 0.00 0.00 45.47 4.45
2837 8363 4.004982 CTGAAAAATGGGCCCAAGAAATG 58.995 43.478 32.58 12.91 0.00 2.32
2854 8382 7.169140 CCAAGAAATGTAAAGGCTGTGTTTTAC 59.831 37.037 0.00 0.00 39.21 2.01
2864 8392 3.065648 GGCTGTGTTTTACGGTTTCTGAA 59.934 43.478 0.00 0.00 37.99 3.02
2992 8520 7.909322 ATTTATCCAGTAAATGCAGGCTCTGC 61.909 42.308 17.27 17.27 43.82 4.26
3010 8538 4.873817 TCTGCTGGTTTCACAATGATTTG 58.126 39.130 0.00 0.00 38.86 2.32
3015 8543 3.317711 TGGTTTCACAATGATTTGTCGCT 59.682 39.130 0.00 0.00 44.24 4.93
3058 8586 3.451178 GTGGACCTAGGTGACATGTATGT 59.549 47.826 22.10 0.00 45.16 2.29
3064 8592 4.160439 CCTAGGTGACATGTATGTGTGAGT 59.840 45.833 0.00 0.00 41.95 3.41
3137 8665 5.416947 GCTTTGGCTGATTCAGAATGATTT 58.583 37.500 17.87 0.00 39.45 2.17
3148 8676 5.138125 TCAGAATGATTTGTTGGCCTTTC 57.862 39.130 3.32 0.00 42.56 2.62
3150 8678 3.903090 AGAATGATTTGTTGGCCTTTCCA 59.097 39.130 3.32 0.00 44.85 3.53
3151 8679 4.533311 AGAATGATTTGTTGGCCTTTCCAT 59.467 37.500 3.32 0.00 46.04 3.41
3169 8697 8.477256 CCTTTCCATAAGGATTATTGCTTTCAA 58.523 33.333 0.00 0.00 45.26 2.69
3232 8760 5.950883 TGTAGTGCAGAGTAATCAGTGTAC 58.049 41.667 0.00 0.00 0.00 2.90
3233 8761 5.475564 TGTAGTGCAGAGTAATCAGTGTACA 59.524 40.000 0.00 0.00 0.00 2.90
3241 8769 8.759641 GCAGAGTAATCAGTGTACATTAGATTG 58.240 37.037 21.05 11.73 31.89 2.67
3467 8995 3.223661 CTGTCTCAGGGCTTCACAC 57.776 57.895 0.00 0.00 0.00 3.82
3529 9057 4.625742 ACTGCGTATTACGATCAATATGCC 59.374 41.667 19.86 8.69 46.17 4.40
3793 9321 1.889170 TCGGGCATTGCAAATGTTGTA 59.111 42.857 11.39 0.00 0.00 2.41
3970 9498 1.651240 GCAACAGCATGCGTGAGGAT 61.651 55.000 19.26 0.00 45.83 3.24
4036 9564 3.632604 GTGACCTCTCGGTTGATGAGATA 59.367 47.826 0.00 0.00 45.73 1.98
4152 9681 9.294030 CTTCCTTGAATATAAACTGTCATTTGC 57.706 33.333 0.00 0.00 0.00 3.68
4168 9697 2.645838 TTGCCCAGGATTCTATGCTC 57.354 50.000 0.00 0.00 0.00 4.26
4228 9764 1.551452 TTTACCATTTGAAGGCCCGG 58.449 50.000 0.00 0.00 0.00 5.73
4255 9791 9.341899 GTACTTTGATGTCCAACACATTTATTC 57.658 33.333 0.00 0.00 46.53 1.75
4256 9792 7.950512 ACTTTGATGTCCAACACATTTATTCA 58.049 30.769 0.00 0.00 46.53 2.57
4257 9793 8.587608 ACTTTGATGTCCAACACATTTATTCAT 58.412 29.630 0.00 0.00 46.53 2.57
4263 9799 8.291888 TGTCCAACACATTTATTCATTTTTCG 57.708 30.769 0.00 0.00 0.00 3.46
4264 9800 8.138074 TGTCCAACACATTTATTCATTTTTCGA 58.862 29.630 0.00 0.00 0.00 3.71
4265 9801 8.638565 GTCCAACACATTTATTCATTTTTCGAG 58.361 33.333 0.00 0.00 0.00 4.04
4266 9802 8.572185 TCCAACACATTTATTCATTTTTCGAGA 58.428 29.630 0.00 0.00 0.00 4.04
4267 9803 8.853345 CCAACACATTTATTCATTTTTCGAGAG 58.147 33.333 0.00 0.00 0.00 3.20
4268 9804 9.398170 CAACACATTTATTCATTTTTCGAGAGT 57.602 29.630 0.00 0.00 0.00 3.24
4271 9807 9.199184 CACATTTATTCATTTTTCGAGAGTACG 57.801 33.333 0.00 0.00 0.00 3.67
4272 9808 7.903431 ACATTTATTCATTTTTCGAGAGTACGC 59.097 33.333 0.00 0.00 0.00 4.42
4273 9809 4.859629 ATTCATTTTTCGAGAGTACGCC 57.140 40.909 0.00 0.00 0.00 5.68
4281 9817 0.172578 CGAGAGTACGCCAATGGTGA 59.827 55.000 20.91 0.09 36.58 4.02
4284 9820 1.134401 AGAGTACGCCAATGGTGATGG 60.134 52.381 20.91 0.00 41.08 3.51
4322 9861 2.300152 GACCTCTCACAACATCACCAGA 59.700 50.000 0.00 0.00 0.00 3.86
4365 9907 3.552273 CCGCACCATACACACTATCTACC 60.552 52.174 0.00 0.00 0.00 3.18
4378 9920 3.905678 CTACCCTCGCGCCTCCTG 61.906 72.222 0.00 0.00 0.00 3.86
4386 9928 2.821810 GCGCCTCCTGCTTCCTTC 60.822 66.667 0.00 0.00 38.05 3.46
4388 9930 2.959484 CGCCTCCTGCTTCCTTCCA 61.959 63.158 0.00 0.00 38.05 3.53
4398 9940 5.044919 TCCTGCTTCCTTCCAAAGATGAATA 60.045 40.000 0.00 0.00 0.00 1.75
4402 9944 5.882557 GCTTCCTTCCAAAGATGAATACTGA 59.117 40.000 0.00 0.00 0.00 3.41
4407 9949 8.108999 TCCTTCCAAAGATGAATACTGAAATGA 58.891 33.333 0.00 0.00 0.00 2.57
4412 9954 8.814235 CCAAAGATGAATACTGAAATGAAATGC 58.186 33.333 0.00 0.00 0.00 3.56
4413 9955 8.529102 CAAAGATGAATACTGAAATGAAATGCG 58.471 33.333 0.00 0.00 0.00 4.73
4414 9956 6.732154 AGATGAATACTGAAATGAAATGCGG 58.268 36.000 0.00 0.00 0.00 5.69
4415 9957 5.247507 TGAATACTGAAATGAAATGCGGG 57.752 39.130 0.00 0.00 0.00 6.13
4416 9958 4.704540 TGAATACTGAAATGAAATGCGGGT 59.295 37.500 0.00 0.00 0.00 5.28
4417 9959 4.637483 ATACTGAAATGAAATGCGGGTG 57.363 40.909 0.00 0.00 0.00 4.61
4420 9962 3.511146 ACTGAAATGAAATGCGGGTGAAT 59.489 39.130 0.00 0.00 0.00 2.57
4428 9970 6.707440 TGAAATGCGGGTGAATTACATATT 57.293 33.333 0.00 0.00 0.00 1.28
4565 10135 3.356290 AGTTGCTCTTTTCACCTGTTGT 58.644 40.909 0.00 0.00 0.00 3.32
4622 10193 2.480419 AGCGTTTCATCACTACAAGTGC 59.520 45.455 2.12 0.00 45.54 4.40
4625 10196 3.064207 GTTTCATCACTACAAGTGCCGA 58.936 45.455 2.12 0.00 45.54 5.54
4626 10197 2.363788 TCATCACTACAAGTGCCGAC 57.636 50.000 2.12 0.00 45.54 4.79
4627 10198 1.893137 TCATCACTACAAGTGCCGACT 59.107 47.619 2.12 0.00 45.54 4.18
4628 10199 1.995484 CATCACTACAAGTGCCGACTG 59.005 52.381 2.12 0.00 45.54 3.51
4629 10200 1.037493 TCACTACAAGTGCCGACTGT 58.963 50.000 2.12 0.00 45.54 3.55
4640 10211 1.004918 CCGACTGTTGGGGTGAGAC 60.005 63.158 6.15 0.00 0.00 3.36
4743 10314 4.045104 GTGATACTGGAGCGATGTAACAG 58.955 47.826 0.00 0.00 35.40 3.16
4763 10334 2.749621 AGCTTTTATTTGCCTCGTCCAG 59.250 45.455 0.00 0.00 0.00 3.86
4800 10371 1.064803 CTGTACCGTAGAGCTGAGCTG 59.935 57.143 13.71 0.00 39.88 4.24
4884 10466 9.754382 CATAAAACTCCAAGAATTATCATTGGG 57.246 33.333 8.05 3.40 43.06 4.12
4901 10484 0.035439 GGGCCATCTCGTTTCTTGGA 60.035 55.000 4.39 0.00 0.00 3.53
4925 10508 2.665185 AAGTGAACACCGGCGAGC 60.665 61.111 9.30 0.00 0.00 5.03
4929 10512 4.373116 GAACACCGGCGAGCTCCA 62.373 66.667 9.30 0.00 0.00 3.86
4933 10516 3.311110 ACCGGCGAGCTCCAAAGA 61.311 61.111 9.30 0.00 0.00 2.52
4943 10526 3.433615 CGAGCTCCAAAGACAGTAAAAGG 59.566 47.826 8.47 0.00 0.00 3.11
4944 10527 3.753797 GAGCTCCAAAGACAGTAAAAGGG 59.246 47.826 0.87 0.00 0.00 3.95
4945 10528 2.820197 GCTCCAAAGACAGTAAAAGGGG 59.180 50.000 0.00 0.00 0.00 4.79
4946 10529 2.820197 CTCCAAAGACAGTAAAAGGGGC 59.180 50.000 0.00 0.00 0.00 5.80
4947 10530 2.445525 TCCAAAGACAGTAAAAGGGGCT 59.554 45.455 0.00 0.00 0.00 5.19
4948 10531 2.558359 CCAAAGACAGTAAAAGGGGCTG 59.442 50.000 0.00 0.00 36.41 4.85
4949 10532 3.222603 CAAAGACAGTAAAAGGGGCTGT 58.777 45.455 0.00 0.00 44.97 4.40
4950 10533 3.595190 AAGACAGTAAAAGGGGCTGTT 57.405 42.857 0.00 0.00 42.71 3.16
4951 10534 4.717279 AAGACAGTAAAAGGGGCTGTTA 57.283 40.909 0.00 0.00 42.71 2.41
4952 10535 4.287766 AGACAGTAAAAGGGGCTGTTAG 57.712 45.455 0.00 0.00 42.71 2.34
4953 10536 3.009143 AGACAGTAAAAGGGGCTGTTAGG 59.991 47.826 0.00 0.00 42.71 2.69
4954 10537 2.714793 ACAGTAAAAGGGGCTGTTAGGT 59.285 45.455 0.00 0.00 40.13 3.08
4955 10538 3.139584 ACAGTAAAAGGGGCTGTTAGGTT 59.860 43.478 0.00 0.00 40.13 3.50
4956 10539 3.506067 CAGTAAAAGGGGCTGTTAGGTTG 59.494 47.826 0.00 0.00 0.00 3.77
4957 10540 3.396611 AGTAAAAGGGGCTGTTAGGTTGA 59.603 43.478 0.00 0.00 0.00 3.18
4958 10541 2.287977 AAAGGGGCTGTTAGGTTGAC 57.712 50.000 0.00 0.00 0.00 3.18
4959 10542 1.145571 AAGGGGCTGTTAGGTTGACA 58.854 50.000 0.00 0.00 0.00 3.58
4960 10543 0.400594 AGGGGCTGTTAGGTTGACAC 59.599 55.000 0.00 0.00 0.00 3.67
4961 10544 0.608308 GGGGCTGTTAGGTTGACACC 60.608 60.000 0.00 0.00 44.67 4.16
4962 10545 0.608308 GGGCTGTTAGGTTGACACCC 60.608 60.000 0.00 0.00 45.63 4.61
4963 10546 0.608308 GGCTGTTAGGTTGACACCCC 60.608 60.000 0.00 0.00 45.63 4.95
4964 10547 0.608308 GCTGTTAGGTTGACACCCCC 60.608 60.000 0.00 0.00 45.63 5.40
4965 10548 1.064825 CTGTTAGGTTGACACCCCCT 58.935 55.000 0.00 0.00 45.63 4.79
4966 10549 1.423921 CTGTTAGGTTGACACCCCCTT 59.576 52.381 0.00 0.00 45.63 3.95
4967 10550 1.422402 TGTTAGGTTGACACCCCCTTC 59.578 52.381 0.00 0.00 45.63 3.46
4968 10551 1.703513 GTTAGGTTGACACCCCCTTCT 59.296 52.381 0.00 0.00 45.63 2.85
4969 10552 2.908351 GTTAGGTTGACACCCCCTTCTA 59.092 50.000 0.00 0.00 45.63 2.10
4970 10553 1.359168 AGGTTGACACCCCCTTCTAC 58.641 55.000 0.00 0.00 45.63 2.59
4971 10554 1.132495 AGGTTGACACCCCCTTCTACT 60.132 52.381 0.00 0.00 45.63 2.57
4972 10555 1.003233 GGTTGACACCCCCTTCTACTG 59.997 57.143 0.00 0.00 37.03 2.74
4973 10556 0.690762 TTGACACCCCCTTCTACTGC 59.309 55.000 0.00 0.00 0.00 4.40
4974 10557 1.198759 TGACACCCCCTTCTACTGCC 61.199 60.000 0.00 0.00 0.00 4.85
4975 10558 0.910088 GACACCCCCTTCTACTGCCT 60.910 60.000 0.00 0.00 0.00 4.75
4976 10559 0.475828 ACACCCCCTTCTACTGCCTT 60.476 55.000 0.00 0.00 0.00 4.35
4977 10560 0.035056 CACCCCCTTCTACTGCCTTG 60.035 60.000 0.00 0.00 0.00 3.61
4978 10561 1.208165 ACCCCCTTCTACTGCCTTGG 61.208 60.000 0.00 0.00 0.00 3.61
4979 10562 1.609783 CCCCTTCTACTGCCTTGGG 59.390 63.158 0.00 0.00 34.68 4.12
4980 10563 1.609783 CCCTTCTACTGCCTTGGGG 59.390 63.158 0.00 0.00 0.00 4.96
4981 10564 1.609783 CCTTCTACTGCCTTGGGGG 59.390 63.158 0.00 0.00 38.36 5.40
4998 10581 3.419759 GCGCGGTGGATGTTCGTT 61.420 61.111 8.83 0.00 0.00 3.85
4999 10582 2.474266 CGCGGTGGATGTTCGTTG 59.526 61.111 0.00 0.00 0.00 4.10
5000 10583 2.175811 GCGGTGGATGTTCGTTGC 59.824 61.111 0.00 0.00 0.00 4.17
5001 10584 2.612567 GCGGTGGATGTTCGTTGCA 61.613 57.895 0.00 0.00 0.00 4.08
5002 10585 1.922135 GCGGTGGATGTTCGTTGCAT 61.922 55.000 0.00 0.00 0.00 3.96
5003 10586 0.179192 CGGTGGATGTTCGTTGCATG 60.179 55.000 0.00 0.00 0.00 4.06
5004 10587 0.456653 GGTGGATGTTCGTTGCATGC 60.457 55.000 11.82 11.82 35.63 4.06
5005 10588 0.240678 GTGGATGTTCGTTGCATGCA 59.759 50.000 18.46 18.46 41.25 3.96
5006 10589 1.135315 GTGGATGTTCGTTGCATGCAT 60.135 47.619 23.37 3.89 44.22 3.96
5007 10590 1.135344 TGGATGTTCGTTGCATGCATG 60.135 47.619 23.37 22.70 39.22 4.06
5016 10599 4.575076 GCATGCATGCGGTTCAAA 57.425 50.000 33.99 0.00 44.67 2.69
5017 10600 2.365823 GCATGCATGCGGTTCAAAG 58.634 52.632 33.99 2.26 44.67 2.77
5018 10601 0.109179 GCATGCATGCGGTTCAAAGA 60.109 50.000 33.99 0.00 44.67 2.52
5019 10602 1.669502 GCATGCATGCGGTTCAAAGAA 60.670 47.619 33.99 0.00 44.67 2.52
5020 10603 2.674954 CATGCATGCGGTTCAAAGAAA 58.325 42.857 14.93 0.00 0.00 2.52
5021 10604 2.420628 TGCATGCGGTTCAAAGAAAG 57.579 45.000 14.09 0.00 0.00 2.62
5022 10605 1.952990 TGCATGCGGTTCAAAGAAAGA 59.047 42.857 14.09 0.00 0.00 2.52
5023 10606 2.360483 TGCATGCGGTTCAAAGAAAGAA 59.640 40.909 14.09 0.00 0.00 2.52
5024 10607 2.726241 GCATGCGGTTCAAAGAAAGAAC 59.274 45.455 0.00 0.00 43.49 3.01
5025 10608 3.550842 GCATGCGGTTCAAAGAAAGAACT 60.551 43.478 0.00 0.00 43.67 3.01
5026 10609 4.320202 GCATGCGGTTCAAAGAAAGAACTA 60.320 41.667 0.00 0.00 43.67 2.24
5027 10610 4.806342 TGCGGTTCAAAGAAAGAACTAC 57.194 40.909 6.09 0.53 43.67 2.73
5028 10611 4.448210 TGCGGTTCAAAGAAAGAACTACT 58.552 39.130 6.09 0.00 43.67 2.57
5029 10612 4.510340 TGCGGTTCAAAGAAAGAACTACTC 59.490 41.667 6.09 0.00 43.67 2.59
5030 10613 4.083961 GCGGTTCAAAGAAAGAACTACTCC 60.084 45.833 6.09 0.00 43.67 3.85
5031 10614 4.451435 CGGTTCAAAGAAAGAACTACTCCC 59.549 45.833 6.09 0.00 43.67 4.30
5032 10615 5.622180 GGTTCAAAGAAAGAACTACTCCCT 58.378 41.667 6.09 0.00 43.67 4.20
5033 10616 5.701750 GGTTCAAAGAAAGAACTACTCCCTC 59.298 44.000 6.09 0.00 43.67 4.30
5034 10617 5.485209 TCAAAGAAAGAACTACTCCCTCC 57.515 43.478 0.00 0.00 0.00 4.30
5035 10618 4.021368 TCAAAGAAAGAACTACTCCCTCCG 60.021 45.833 0.00 0.00 0.00 4.63
5036 10619 3.172471 AGAAAGAACTACTCCCTCCGT 57.828 47.619 0.00 0.00 0.00 4.69
5037 10620 3.508426 AGAAAGAACTACTCCCTCCGTT 58.492 45.455 0.00 0.00 0.00 4.44
5038 10621 3.510753 AGAAAGAACTACTCCCTCCGTTC 59.489 47.826 0.00 0.00 36.81 3.95
5039 10622 1.849977 AGAACTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 37.15 3.62
5040 10623 1.358445 AGAACTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 37.15 3.36
5041 10624 2.579860 AGAACTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 37.15 2.94
5042 10625 3.011032 AGAACTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 37.15 2.69
5043 10626 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5044 10627 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5045 10628 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5046 10629 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5047 10630 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
5048 10631 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
5049 10632 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5050 10633 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5051 10634 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
5052 10635 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
5053 10636 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
5054 10637 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.880027 ACATTGGCGTTCTTGAACTCC 59.120 47.619 13.73 13.73 0.00 3.85
1 2 2.350772 CCACATTGGCGTTCTTGAACTC 60.351 50.000 11.11 3.78 0.00 3.01
2 3 1.608590 CCACATTGGCGTTCTTGAACT 59.391 47.619 11.11 0.00 0.00 3.01
3 4 1.606668 TCCACATTGGCGTTCTTGAAC 59.393 47.619 3.60 3.60 37.47 3.18
4 5 1.974265 TCCACATTGGCGTTCTTGAA 58.026 45.000 0.00 0.00 37.47 2.69
5 6 2.198827 ATCCACATTGGCGTTCTTGA 57.801 45.000 0.00 0.00 37.47 3.02
6 7 2.097466 GGTATCCACATTGGCGTTCTTG 59.903 50.000 0.00 0.00 37.47 3.02
7 8 2.026262 AGGTATCCACATTGGCGTTCTT 60.026 45.455 0.00 0.00 37.47 2.52
8 9 1.559682 AGGTATCCACATTGGCGTTCT 59.440 47.619 0.00 0.00 37.47 3.01
9 10 2.038387 AGGTATCCACATTGGCGTTC 57.962 50.000 0.00 0.00 37.47 3.95
10 11 2.507407 AAGGTATCCACATTGGCGTT 57.493 45.000 0.00 0.00 37.47 4.84
11 12 2.026262 AGAAAGGTATCCACATTGGCGT 60.026 45.455 0.00 0.00 37.47 5.68
12 13 2.614057 GAGAAAGGTATCCACATTGGCG 59.386 50.000 0.00 0.00 37.47 5.69
13 14 2.614057 CGAGAAAGGTATCCACATTGGC 59.386 50.000 0.00 0.00 37.47 4.52
14 15 3.206150 CCGAGAAAGGTATCCACATTGG 58.794 50.000 0.00 0.00 39.43 3.16
15 16 2.614057 GCCGAGAAAGGTATCCACATTG 59.386 50.000 0.00 0.00 0.00 2.82
16 17 2.741878 CGCCGAGAAAGGTATCCACATT 60.742 50.000 0.00 0.00 0.00 2.71
17 18 1.202533 CGCCGAGAAAGGTATCCACAT 60.203 52.381 0.00 0.00 0.00 3.21
18 19 0.174845 CGCCGAGAAAGGTATCCACA 59.825 55.000 0.00 0.00 0.00 4.17
19 20 0.458669 TCGCCGAGAAAGGTATCCAC 59.541 55.000 0.00 0.00 0.00 4.02
20 21 1.136305 CTTCGCCGAGAAAGGTATCCA 59.864 52.381 0.00 0.00 38.57 3.41
21 22 1.407979 TCTTCGCCGAGAAAGGTATCC 59.592 52.381 0.00 0.00 38.57 2.59
22 23 2.865343 TCTTCGCCGAGAAAGGTATC 57.135 50.000 0.00 0.00 38.57 2.24
23 24 2.159085 CCTTCTTCGCCGAGAAAGGTAT 60.159 50.000 16.94 0.00 38.57 2.73
24 25 1.203994 CCTTCTTCGCCGAGAAAGGTA 59.796 52.381 16.94 0.00 38.57 3.08
25 26 0.037232 CCTTCTTCGCCGAGAAAGGT 60.037 55.000 16.94 0.00 38.57 3.50
26 27 0.741221 CCCTTCTTCGCCGAGAAAGG 60.741 60.000 17.80 17.80 38.57 3.11
27 28 0.246635 TCCCTTCTTCGCCGAGAAAG 59.753 55.000 4.19 4.19 38.57 2.62
28 29 0.902531 ATCCCTTCTTCGCCGAGAAA 59.097 50.000 0.00 0.00 38.57 2.52
29 30 0.902531 AATCCCTTCTTCGCCGAGAA 59.097 50.000 0.00 0.00 37.31 2.87
30 31 0.902531 AAATCCCTTCTTCGCCGAGA 59.097 50.000 0.00 0.00 0.00 4.04
31 32 1.291132 GAAATCCCTTCTTCGCCGAG 58.709 55.000 0.00 0.00 0.00 4.63
32 33 0.611200 TGAAATCCCTTCTTCGCCGA 59.389 50.000 0.00 0.00 34.86 5.54
33 34 0.727398 GTGAAATCCCTTCTTCGCCG 59.273 55.000 0.00 0.00 34.86 6.46
34 35 1.821216 TGTGAAATCCCTTCTTCGCC 58.179 50.000 0.00 0.00 34.86 5.54
35 36 3.009723 TCATGTGAAATCCCTTCTTCGC 58.990 45.455 0.00 0.00 34.86 4.70
36 37 4.256920 ACTCATGTGAAATCCCTTCTTCG 58.743 43.478 0.94 0.00 34.86 3.79
37 38 5.942826 AGAACTCATGTGAAATCCCTTCTTC 59.057 40.000 0.94 0.00 34.86 2.87
38 39 5.885465 AGAACTCATGTGAAATCCCTTCTT 58.115 37.500 0.94 0.00 34.86 2.52
39 40 5.495640 GAGAACTCATGTGAAATCCCTTCT 58.504 41.667 0.94 0.00 34.86 2.85
40 41 4.331168 CGAGAACTCATGTGAAATCCCTTC 59.669 45.833 0.94 0.00 34.31 3.46
41 42 4.020218 TCGAGAACTCATGTGAAATCCCTT 60.020 41.667 0.94 0.00 0.00 3.95
42 43 3.515502 TCGAGAACTCATGTGAAATCCCT 59.484 43.478 0.94 0.00 0.00 4.20
43 44 3.619038 GTCGAGAACTCATGTGAAATCCC 59.381 47.826 0.94 0.00 0.00 3.85
44 45 4.499183 AGTCGAGAACTCATGTGAAATCC 58.501 43.478 0.94 0.00 30.02 3.01
45 46 5.228220 CGTAGTCGAGAACTCATGTGAAATC 59.772 44.000 0.94 0.00 39.55 2.17
46 47 5.096169 CGTAGTCGAGAACTCATGTGAAAT 58.904 41.667 0.94 0.00 39.55 2.17
47 48 4.023450 ACGTAGTCGAGAACTCATGTGAAA 60.023 41.667 0.94 0.00 29.74 2.69
48 49 3.501062 ACGTAGTCGAGAACTCATGTGAA 59.499 43.478 0.94 0.00 29.74 3.18
49 50 3.072211 ACGTAGTCGAGAACTCATGTGA 58.928 45.455 0.94 0.00 29.74 3.58
50 51 3.164358 CACGTAGTCGAGAACTCATGTG 58.836 50.000 0.00 0.00 41.61 3.21
51 52 2.414293 GCACGTAGTCGAGAACTCATGT 60.414 50.000 0.00 0.00 41.61 3.21
52 53 2.177977 GCACGTAGTCGAGAACTCATG 58.822 52.381 0.00 0.00 41.61 3.07
53 54 1.810755 TGCACGTAGTCGAGAACTCAT 59.189 47.619 0.00 0.00 41.61 2.90
54 55 1.069432 GTGCACGTAGTCGAGAACTCA 60.069 52.381 0.00 0.00 41.61 3.41
55 56 1.069432 TGTGCACGTAGTCGAGAACTC 60.069 52.381 13.13 0.00 41.61 3.01
56 57 0.949397 TGTGCACGTAGTCGAGAACT 59.051 50.000 13.13 0.00 41.61 3.01
57 58 1.050767 GTGTGCACGTAGTCGAGAAC 58.949 55.000 13.13 0.00 41.61 3.01
58 59 0.039798 GGTGTGCACGTAGTCGAGAA 60.040 55.000 13.13 0.00 41.61 2.87
59 60 0.887836 AGGTGTGCACGTAGTCGAGA 60.888 55.000 13.13 0.00 41.61 4.04
60 61 0.039437 AAGGTGTGCACGTAGTCGAG 60.039 55.000 13.13 0.00 41.61 4.04
61 62 1.237533 TAAGGTGTGCACGTAGTCGA 58.762 50.000 13.13 0.00 41.61 4.20
62 63 2.054687 TTAAGGTGTGCACGTAGTCG 57.945 50.000 13.13 0.00 41.61 4.18
63 64 6.470557 TTTTATTAAGGTGTGCACGTAGTC 57.529 37.500 13.13 0.00 41.61 2.59
65 66 8.415192 TCTATTTTATTAAGGTGTGCACGTAG 57.585 34.615 13.13 0.00 0.00 3.51
66 67 8.036575 ACTCTATTTTATTAAGGTGTGCACGTA 58.963 33.333 13.13 0.00 0.00 3.57
67 68 6.877322 ACTCTATTTTATTAAGGTGTGCACGT 59.123 34.615 13.13 0.00 0.00 4.49
68 69 7.303634 ACTCTATTTTATTAAGGTGTGCACG 57.696 36.000 13.13 0.00 0.00 5.34
69 70 8.512138 ACAACTCTATTTTATTAAGGTGTGCAC 58.488 33.333 10.75 10.75 36.57 4.57
70 71 8.630054 ACAACTCTATTTTATTAAGGTGTGCA 57.370 30.769 0.00 0.00 36.57 4.57
71 72 9.341899 CAACAACTCTATTTTATTAAGGTGTGC 57.658 33.333 0.00 0.00 37.90 4.57
103 104 5.183140 CCATCTCAATAAGTGTCCGGTTTTT 59.817 40.000 0.00 0.00 0.00 1.94
104 105 4.700213 CCATCTCAATAAGTGTCCGGTTTT 59.300 41.667 0.00 0.00 0.00 2.43
105 106 4.261801 CCATCTCAATAAGTGTCCGGTTT 58.738 43.478 0.00 0.00 0.00 3.27
106 107 3.873910 CCATCTCAATAAGTGTCCGGTT 58.126 45.455 0.00 0.00 0.00 4.44
107 108 2.420129 GCCATCTCAATAAGTGTCCGGT 60.420 50.000 0.00 0.00 0.00 5.28
108 109 2.213499 GCCATCTCAATAAGTGTCCGG 58.787 52.381 0.00 0.00 0.00 5.14
109 110 1.860950 CGCCATCTCAATAAGTGTCCG 59.139 52.381 0.00 0.00 0.00 4.79
110 111 3.126831 CTCGCCATCTCAATAAGTGTCC 58.873 50.000 0.00 0.00 0.00 4.02
111 112 4.046938 TCTCGCCATCTCAATAAGTGTC 57.953 45.455 0.00 0.00 0.00 3.67
112 113 4.184629 GTTCTCGCCATCTCAATAAGTGT 58.815 43.478 0.00 0.00 0.00 3.55
113 114 3.243877 CGTTCTCGCCATCTCAATAAGTG 59.756 47.826 0.00 0.00 0.00 3.16
114 115 3.130516 TCGTTCTCGCCATCTCAATAAGT 59.869 43.478 0.00 0.00 36.96 2.24
115 116 3.706698 TCGTTCTCGCCATCTCAATAAG 58.293 45.455 0.00 0.00 36.96 1.73
116 117 3.793797 TCGTTCTCGCCATCTCAATAA 57.206 42.857 0.00 0.00 36.96 1.40
117 118 3.642705 CATCGTTCTCGCCATCTCAATA 58.357 45.455 0.00 0.00 36.96 1.90
118 119 2.477825 CATCGTTCTCGCCATCTCAAT 58.522 47.619 0.00 0.00 36.96 2.57
119 120 1.926561 CATCGTTCTCGCCATCTCAA 58.073 50.000 0.00 0.00 36.96 3.02
120 121 0.528466 GCATCGTTCTCGCCATCTCA 60.528 55.000 0.00 0.00 36.96 3.27
121 122 0.249238 AGCATCGTTCTCGCCATCTC 60.249 55.000 0.00 0.00 36.96 2.75
122 123 0.176680 AAGCATCGTTCTCGCCATCT 59.823 50.000 0.00 0.00 36.96 2.90
123 124 0.302890 CAAGCATCGTTCTCGCCATC 59.697 55.000 0.00 0.00 36.96 3.51
124 125 0.108186 TCAAGCATCGTTCTCGCCAT 60.108 50.000 0.00 0.00 36.96 4.40
125 126 0.108186 ATCAAGCATCGTTCTCGCCA 60.108 50.000 0.00 0.00 36.96 5.69
126 127 0.302890 CATCAAGCATCGTTCTCGCC 59.697 55.000 0.00 0.00 36.96 5.54
127 128 1.005557 GTCATCAAGCATCGTTCTCGC 60.006 52.381 0.00 0.00 36.96 5.03
128 129 1.253800 CGTCATCAAGCATCGTTCTCG 59.746 52.381 0.00 0.00 38.55 4.04
129 130 1.005557 GCGTCATCAAGCATCGTTCTC 60.006 52.381 0.00 0.00 0.00 2.87
130 131 1.002366 GCGTCATCAAGCATCGTTCT 58.998 50.000 0.00 0.00 0.00 3.01
131 132 0.026803 GGCGTCATCAAGCATCGTTC 59.973 55.000 0.00 0.00 34.54 3.95
132 133 0.391661 AGGCGTCATCAAGCATCGTT 60.392 50.000 0.00 0.00 34.54 3.85
133 134 0.391661 AAGGCGTCATCAAGCATCGT 60.392 50.000 0.00 0.00 34.54 3.73
134 135 0.027194 CAAGGCGTCATCAAGCATCG 59.973 55.000 0.00 0.00 34.54 3.84
135 136 1.089920 ACAAGGCGTCATCAAGCATC 58.910 50.000 0.00 0.00 34.54 3.91
136 137 1.538047 AACAAGGCGTCATCAAGCAT 58.462 45.000 0.00 0.00 34.54 3.79
137 138 1.001487 CAAACAAGGCGTCATCAAGCA 60.001 47.619 0.00 0.00 34.54 3.91
138 139 1.001378 ACAAACAAGGCGTCATCAAGC 60.001 47.619 0.00 0.00 0.00 4.01
139 140 3.044986 CAACAAACAAGGCGTCATCAAG 58.955 45.455 0.00 0.00 0.00 3.02
140 141 2.425312 ACAACAAACAAGGCGTCATCAA 59.575 40.909 0.00 0.00 0.00 2.57
141 142 2.020720 ACAACAAACAAGGCGTCATCA 58.979 42.857 0.00 0.00 0.00 3.07
142 143 2.384382 CACAACAAACAAGGCGTCATC 58.616 47.619 0.00 0.00 0.00 2.92
143 144 1.066908 CCACAACAAACAAGGCGTCAT 59.933 47.619 0.00 0.00 0.00 3.06
144 145 0.453793 CCACAACAAACAAGGCGTCA 59.546 50.000 0.00 0.00 0.00 4.35
145 146 0.869880 GCCACAACAAACAAGGCGTC 60.870 55.000 0.00 0.00 35.42 5.19
146 147 1.140804 GCCACAACAAACAAGGCGT 59.859 52.632 0.00 0.00 35.42 5.68
147 148 4.011046 GCCACAACAAACAAGGCG 57.989 55.556 0.00 0.00 35.42 5.52
148 149 1.202510 TCATGCCACAACAAACAAGGC 60.203 47.619 0.00 0.00 45.41 4.35
149 150 2.159128 TGTCATGCCACAACAAACAAGG 60.159 45.455 0.00 0.00 0.00 3.61
150 151 3.117794 CTGTCATGCCACAACAAACAAG 58.882 45.455 0.00 0.00 0.00 3.16
151 152 2.495270 ACTGTCATGCCACAACAAACAA 59.505 40.909 0.00 0.00 0.00 2.83
152 153 2.098614 ACTGTCATGCCACAACAAACA 58.901 42.857 0.00 0.00 0.00 2.83
153 154 2.462889 CACTGTCATGCCACAACAAAC 58.537 47.619 0.00 0.00 0.00 2.93
154 155 1.408340 CCACTGTCATGCCACAACAAA 59.592 47.619 0.00 0.00 0.00 2.83
155 156 1.031235 CCACTGTCATGCCACAACAA 58.969 50.000 0.00 0.00 0.00 2.83
156 157 0.182299 TCCACTGTCATGCCACAACA 59.818 50.000 0.00 0.00 0.00 3.33
157 158 0.877071 CTCCACTGTCATGCCACAAC 59.123 55.000 0.00 0.00 0.00 3.32
158 159 0.250858 CCTCCACTGTCATGCCACAA 60.251 55.000 0.00 0.00 0.00 3.33
166 167 2.848679 TGCTGCCCTCCACTGTCA 60.849 61.111 0.00 0.00 0.00 3.58
170 171 3.076092 CTTCTGCTGCCCTCCACT 58.924 61.111 0.00 0.00 0.00 4.00
282 283 1.629353 ACCTAGTCGACACCAGAGAGA 59.371 52.381 19.50 0.00 0.00 3.10
298 299 6.485313 CCGCCACAATCATATTCTTAAACCTA 59.515 38.462 0.00 0.00 0.00 3.08
314 315 0.394762 ATCAGCATGTCCGCCACAAT 60.395 50.000 0.00 0.00 38.97 2.71
365 1066 2.435938 TCGCGACCCAATGGCTTC 60.436 61.111 3.71 0.00 33.59 3.86
369 1070 3.499737 GCACTCGCGACCCAATGG 61.500 66.667 3.71 0.00 37.80 3.16
373 1074 4.758251 CATGGCACTCGCGACCCA 62.758 66.667 17.52 17.52 39.92 4.51
396 1097 1.202020 CCATTGCGGTGTCATTGTACG 60.202 52.381 0.00 0.00 0.00 3.67
401 1102 3.287445 GCCCATTGCGGTGTCATT 58.713 55.556 0.00 0.00 0.00 2.57
457 1158 9.221933 ACCAACATCATAAGACGTACAAAAATA 57.778 29.630 0.00 0.00 0.00 1.40
467 1168 3.861840 AGGTCACCAACATCATAAGACG 58.138 45.455 0.00 0.00 0.00 4.18
480 1181 3.181469 CGCCTAGCTAAAATAGGTCACCA 60.181 47.826 0.00 0.00 41.68 4.17
501 1202 4.749245 AAATCTGGACAAAGCAACTACG 57.251 40.909 0.00 0.00 0.00 3.51
508 1209 3.308530 CGGACAAAAATCTGGACAAAGC 58.691 45.455 0.00 0.00 0.00 3.51
526 1227 5.995186 GCTTGCTAAAGAGGGAAACCGGA 62.995 52.174 9.46 0.00 44.57 5.14
534 1235 3.006247 GAGAACTGCTTGCTAAAGAGGG 58.994 50.000 0.00 0.00 35.19 4.30
560 1264 3.773119 TGGGGATGGAAGAAGTAGTACAC 59.227 47.826 2.52 0.00 0.00 2.90
561 1265 4.069312 TGGGGATGGAAGAAGTAGTACA 57.931 45.455 2.52 0.00 0.00 2.90
694 4770 4.142534 CCTCGTCATGACAATCATTTTGCT 60.143 41.667 24.93 0.00 34.28 3.91
707 4783 1.731709 CAATGTTTCGCCTCGTCATGA 59.268 47.619 0.00 0.00 0.00 3.07
710 4786 0.602638 AGCAATGTTTCGCCTCGTCA 60.603 50.000 0.00 0.00 0.00 4.35
731 4807 2.263077 CGAAACTTCCAGATGACTCCG 58.737 52.381 0.00 0.00 0.00 4.63
737 4813 1.298157 TGCCGCGAAACTTCCAGATG 61.298 55.000 8.23 0.00 0.00 2.90
758 4834 0.865769 TTCTTTCTTCGGTCGCAAGC 59.134 50.000 0.00 0.00 37.18 4.01
785 4861 8.840321 TCTCTAGTTTTCTTTTGTTTCTGGATG 58.160 33.333 0.00 0.00 0.00 3.51
786 4862 8.980481 TCTCTAGTTTTCTTTTGTTTCTGGAT 57.020 30.769 0.00 0.00 0.00 3.41
787 4863 8.980481 ATCTCTAGTTTTCTTTTGTTTCTGGA 57.020 30.769 0.00 0.00 0.00 3.86
822 4898 7.047271 CCTTCCCTATTCTTTTCTTCTCTCTG 58.953 42.308 0.00 0.00 0.00 3.35
843 4921 2.418083 CGCTGCCCCCAATTCCTTC 61.418 63.158 0.00 0.00 0.00 3.46
1268 5350 9.676129 TCCTAAACTTCTCAATCCCTAGATTAT 57.324 33.333 0.00 0.00 40.89 1.28
1271 5353 7.418025 CGTTCCTAAACTTCTCAATCCCTAGAT 60.418 40.741 0.00 0.00 32.95 1.98
1272 5354 6.127423 CGTTCCTAAACTTCTCAATCCCTAGA 60.127 42.308 0.00 0.00 32.95 2.43
1325 5414 0.249120 ATCCGCATCCTGTTCGACAA 59.751 50.000 0.00 0.00 0.00 3.18
1376 5465 6.063404 CCACCTTTTACACTACAAACCCTAA 58.937 40.000 0.00 0.00 0.00 2.69
1402 5492 2.358737 CCACTTCCGCCACTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
1417 5516 1.360162 ACCTACACACTAGCCTACCCA 59.640 52.381 0.00 0.00 0.00 4.51
1462 5567 0.322975 TGGGACTGCAGCTCTTCTTC 59.677 55.000 15.27 1.14 0.00 2.87
1480 5585 5.927689 TGCAATTTAGTCCTTTCAATGCTTG 59.072 36.000 0.00 0.00 0.00 4.01
1536 5641 7.813645 AGTTATTACATTTGGAACGGTCTTTC 58.186 34.615 0.00 0.00 0.00 2.62
1557 5662 9.322769 AGGAGATTCTGTCCTTTTAACTAGTTA 57.677 33.333 11.38 11.38 42.12 2.24
1573 5678 3.577848 AGGTAGCTGCATAGGAGATTCTG 59.422 47.826 3.61 0.00 0.00 3.02
1638 5743 2.069273 CATCGAGGTCACAAACTCCAC 58.931 52.381 0.00 0.00 0.00 4.02
1672 5777 5.647658 CCTGTTAAGTTGCCATCACTAATCA 59.352 40.000 0.00 0.00 0.00 2.57
1896 7179 1.754621 CTCAGCTAGCCTGGTCGGA 60.755 63.158 12.13 0.00 42.05 4.55
1938 7221 3.379452 CAGGTGATACTCTTTCCCCTCT 58.621 50.000 0.00 0.00 0.00 3.69
1949 7232 1.827969 GACAGTGAGCCAGGTGATACT 59.172 52.381 0.00 0.00 0.00 2.12
1952 7235 1.002888 CAAGACAGTGAGCCAGGTGAT 59.997 52.381 0.00 0.00 0.00 3.06
1962 7245 7.904558 AGGATATCATAGTTCAAGACAGTGA 57.095 36.000 4.83 0.00 0.00 3.41
2072 7355 1.068434 GCAGACTACAGATCAGGAGGC 59.932 57.143 1.99 0.00 0.00 4.70
2152 7435 2.849473 ACAAAAACAAAACTACGCTGCG 59.151 40.909 21.91 21.91 0.00 5.18
2158 7441 7.792925 AGCAAACTGAACAAAAACAAAACTAC 58.207 30.769 0.00 0.00 0.00 2.73
2166 7449 5.381477 CAACCAAGCAAACTGAACAAAAAC 58.619 37.500 0.00 0.00 0.00 2.43
2167 7450 4.453819 CCAACCAAGCAAACTGAACAAAAA 59.546 37.500 0.00 0.00 0.00 1.94
2201 7484 2.853235 ACCACAAGTAGGCCAAGTAC 57.147 50.000 5.01 0.00 0.00 2.73
2254 7537 7.309770 AGGGGCTAATGACTATTAGAAGAAG 57.690 40.000 10.37 0.00 45.63 2.85
2300 7583 9.691362 TGCTTTTCTACTGATTTAAAATGTTCC 57.309 29.630 0.00 0.00 0.00 3.62
2351 7634 3.417101 TGTCCAACGGCTGTGAATATTT 58.583 40.909 0.00 0.00 0.00 1.40
2386 7669 3.391506 CAGCTCATGGAATATGGTCGA 57.608 47.619 0.00 0.00 0.00 4.20
2453 7736 7.888250 AATCACTCACACATCAGAGATAGTA 57.112 36.000 0.00 0.00 35.83 1.82
2574 7857 7.507277 TGACTCATAGGATTGCTAACTACATCT 59.493 37.037 0.00 0.00 0.00 2.90
2591 7874 6.558009 CACATGGACCAAATTTGACTCATAG 58.442 40.000 19.86 13.83 0.00 2.23
2620 7903 4.464008 CCACAGCCACTAAATATGACCAT 58.536 43.478 0.00 0.00 0.00 3.55
2622 7905 3.214328 CCCACAGCCACTAAATATGACC 58.786 50.000 0.00 0.00 0.00 4.02
2633 7916 0.243636 GCATTGTAACCCACAGCCAC 59.756 55.000 0.00 0.00 38.72 5.01
2635 7918 1.506262 CGCATTGTAACCCACAGCC 59.494 57.895 0.00 0.00 38.72 4.85
2676 7959 3.564511 AGGACATGAAAATTTTGTCGCG 58.435 40.909 8.47 0.00 40.49 5.87
2678 7961 5.048364 TGGGTAGGACATGAAAATTTTGTCG 60.048 40.000 8.47 0.00 40.49 4.35
2686 7969 2.556559 GGGCTTGGGTAGGACATGAAAA 60.557 50.000 0.00 0.00 0.00 2.29
2742 8051 5.243730 TCCACATTGTCTTCCTCAAAATTCC 59.756 40.000 0.00 0.00 0.00 3.01
2756 8065 2.061773 CGTCACTCACTCCACATTGTC 58.938 52.381 0.00 0.00 0.00 3.18
2759 8068 1.048601 ACCGTCACTCACTCCACATT 58.951 50.000 0.00 0.00 0.00 2.71
2763 8072 1.152631 TCCACCGTCACTCACTCCA 60.153 57.895 0.00 0.00 0.00 3.86
2772 8081 2.682928 TTTCCTCCCCTCCACCGTCA 62.683 60.000 0.00 0.00 0.00 4.35
2813 8339 0.686224 CTTGGGCCCATTTTTCAGCA 59.314 50.000 29.23 5.98 0.00 4.41
2814 8340 0.975887 TCTTGGGCCCATTTTTCAGC 59.024 50.000 29.23 0.00 0.00 4.26
2837 8363 4.556942 AACCGTAAAACACAGCCTTTAC 57.443 40.909 0.00 0.00 35.55 2.01
2854 8382 3.904136 AGTTTGCAGATTCAGAAACCG 57.096 42.857 0.00 0.00 0.00 4.44
3010 8538 1.098050 TACCCTACGGAAAGAGCGAC 58.902 55.000 0.00 0.00 0.00 5.19
3015 8543 5.221303 CCACGAATAATACCCTACGGAAAGA 60.221 44.000 0.00 0.00 0.00 2.52
3036 8564 3.451178 ACATACATGTCACCTAGGTCCAC 59.549 47.826 12.84 12.41 35.87 4.02
3058 8586 3.245229 ACCATCAGGCCATAAAACTCACA 60.245 43.478 5.01 0.00 39.06 3.58
3120 8648 4.565564 GCCAACAAATCATTCTGAATCAGC 59.434 41.667 5.18 0.00 0.00 4.26
3122 8650 4.773674 AGGCCAACAAATCATTCTGAATCA 59.226 37.500 5.01 0.00 0.00 2.57
3169 8697 6.351711 TGATGTGCACTCTGCTAGATATTTT 58.648 36.000 19.41 0.00 45.31 1.82
3174 8702 3.134262 ACATGATGTGCACTCTGCTAGAT 59.866 43.478 19.41 0.00 45.31 1.98
3467 8995 2.557920 AGACCTTTGGACAAGAGCAG 57.442 50.000 0.00 0.00 0.00 4.24
3761 9289 2.079170 ATGCCCGAGATCAGAAGAGA 57.921 50.000 0.00 0.00 0.00 3.10
3793 9321 0.596082 CGAATTTCACCGGCCAACTT 59.404 50.000 0.00 0.00 0.00 2.66
3902 9430 2.050077 GTCAAAAGTGCAGGCCGC 60.050 61.111 11.92 11.92 42.89 6.53
3970 9498 2.680841 CTGTCTGTTGGGAAAAACACGA 59.319 45.455 0.00 0.00 35.16 4.35
4152 9681 3.073503 TGGATTGAGCATAGAATCCTGGG 59.926 47.826 11.12 0.00 45.50 4.45
4168 9697 2.028420 TCCTCGCAATGAGTGGATTG 57.972 50.000 3.71 0.00 43.64 2.67
4228 9764 5.705609 AATGTGTTGGACATCAAAGTACC 57.294 39.130 0.00 0.00 45.12 3.34
4255 9791 4.334443 CATTGGCGTACTCTCGAAAAATG 58.666 43.478 0.00 0.00 0.00 2.32
4256 9792 3.374058 CCATTGGCGTACTCTCGAAAAAT 59.626 43.478 0.00 0.00 0.00 1.82
4257 9793 2.739913 CCATTGGCGTACTCTCGAAAAA 59.260 45.455 0.00 0.00 0.00 1.94
4262 9798 0.172578 TCACCATTGGCGTACTCTCG 59.827 55.000 1.54 0.00 0.00 4.04
4263 9799 2.205074 CATCACCATTGGCGTACTCTC 58.795 52.381 1.54 0.00 0.00 3.20
4264 9800 1.134401 CCATCACCATTGGCGTACTCT 60.134 52.381 1.54 0.00 0.00 3.24
4265 9801 1.299541 CCATCACCATTGGCGTACTC 58.700 55.000 1.54 0.00 0.00 2.59
4266 9802 3.476740 CCATCACCATTGGCGTACT 57.523 52.632 1.54 0.00 0.00 2.73
4272 9808 0.609151 TTTGCTGCCATCACCATTGG 59.391 50.000 0.00 0.00 37.31 3.16
4273 9809 2.343101 CTTTTGCTGCCATCACCATTG 58.657 47.619 0.00 0.00 0.00 2.82
4281 9817 3.005791 GTCTTTACACCTTTTGCTGCCAT 59.994 43.478 0.00 0.00 0.00 4.40
4284 9820 2.623416 AGGTCTTTACACCTTTTGCTGC 59.377 45.455 0.00 0.00 45.24 5.25
4322 9861 4.687483 CGGTGTTTCAACTCTATAACCGTT 59.313 41.667 8.23 0.00 43.22 4.44
4337 9879 1.069500 GTGTGTATGGTGCGGTGTTTC 60.069 52.381 0.00 0.00 0.00 2.78
4378 9920 5.882557 TCAGTATTCATCTTTGGAAGGAAGC 59.117 40.000 0.00 0.00 0.00 3.86
4386 9928 8.814235 GCATTTCATTTCAGTATTCATCTTTGG 58.186 33.333 0.00 0.00 0.00 3.28
4388 9930 7.703621 CCGCATTTCATTTCAGTATTCATCTTT 59.296 33.333 0.00 0.00 0.00 2.52
4398 9940 2.513753 TCACCCGCATTTCATTTCAGT 58.486 42.857 0.00 0.00 0.00 3.41
4402 9944 5.398603 TGTAATTCACCCGCATTTCATTT 57.601 34.783 0.00 0.00 0.00 2.32
4428 9970 4.742138 GCAATGTTTACAGCCCTGGAAAAA 60.742 41.667 7.23 2.91 44.23 1.94
4460 10002 2.095212 GCGCCCTCCTGAAACTAAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
4461 10003 1.883926 GCGCCCTCCTGAAACTAAAAA 59.116 47.619 0.00 0.00 0.00 1.94
4462 10004 1.202830 TGCGCCCTCCTGAAACTAAAA 60.203 47.619 4.18 0.00 0.00 1.52
4529 10099 4.342378 AGAGCAACTCTGAACTTGTGTCTA 59.658 41.667 0.00 0.00 39.62 2.59
4545 10115 3.782889 ACAACAGGTGAAAAGAGCAAC 57.217 42.857 0.00 0.00 0.00 4.17
4565 10135 1.137282 TCGTCACTTGTGCACCTGTAA 59.863 47.619 15.69 0.17 0.00 2.41
4622 10193 1.004918 GTCTCACCCCAACAGTCGG 60.005 63.158 0.00 0.00 0.00 4.79
4625 10196 2.056906 GCCTGTCTCACCCCAACAGT 62.057 60.000 0.00 0.00 38.97 3.55
4626 10197 1.302832 GCCTGTCTCACCCCAACAG 60.303 63.158 0.00 0.00 40.05 3.16
4627 10198 1.768684 GAGCCTGTCTCACCCCAACA 61.769 60.000 0.00 0.00 41.51 3.33
4628 10199 1.003233 GAGCCTGTCTCACCCCAAC 60.003 63.158 0.00 0.00 41.51 3.77
4629 10200 2.583441 CGAGCCTGTCTCACCCCAA 61.583 63.158 0.00 0.00 41.98 4.12
4743 10314 2.732282 GCTGGACGAGGCAAATAAAAGC 60.732 50.000 0.00 0.00 0.00 3.51
4782 10353 0.248702 GCAGCTCAGCTCTACGGTAC 60.249 60.000 0.00 0.00 36.40 3.34
4800 10371 2.746362 CCTGTGTTCTCCTTTCATCTGC 59.254 50.000 0.00 0.00 0.00 4.26
4884 10466 5.296780 TGATTAATCCAAGAAACGAGATGGC 59.703 40.000 12.90 0.00 32.87 4.40
4901 10484 2.418628 CGCCGGTGTTCACTTGATTAAT 59.581 45.455 6.91 0.00 0.00 1.40
4925 10508 2.820197 GCCCCTTTTACTGTCTTTGGAG 59.180 50.000 0.00 0.00 0.00 3.86
4929 10512 3.595190 ACAGCCCCTTTTACTGTCTTT 57.405 42.857 0.00 0.00 40.56 2.52
4933 10516 2.714793 ACCTAACAGCCCCTTTTACTGT 59.285 45.455 0.00 0.00 46.27 3.55
4943 10526 2.942641 GGTGTCAACCTAACAGCCC 58.057 57.895 0.00 0.00 43.84 5.19
4945 10528 0.608308 GGGGGTGTCAACCTAACAGC 60.608 60.000 6.92 0.00 46.70 4.40
4946 10529 1.064825 AGGGGGTGTCAACCTAACAG 58.935 55.000 6.92 0.00 46.70 3.16
4947 10530 1.422402 GAAGGGGGTGTCAACCTAACA 59.578 52.381 6.92 0.00 46.70 2.41
4948 10531 1.703513 AGAAGGGGGTGTCAACCTAAC 59.296 52.381 6.92 0.00 46.70 2.34
4949 10532 2.127651 AGAAGGGGGTGTCAACCTAA 57.872 50.000 6.92 0.00 46.70 2.69
4950 10533 2.113052 AGTAGAAGGGGGTGTCAACCTA 59.887 50.000 6.92 0.00 46.70 3.08
4951 10534 1.132495 AGTAGAAGGGGGTGTCAACCT 60.132 52.381 6.92 0.00 46.70 3.50
4952 10535 1.003233 CAGTAGAAGGGGGTGTCAACC 59.997 57.143 0.00 0.00 46.81 3.77
4953 10536 1.610886 GCAGTAGAAGGGGGTGTCAAC 60.611 57.143 0.00 0.00 0.00 3.18
4954 10537 0.690762 GCAGTAGAAGGGGGTGTCAA 59.309 55.000 0.00 0.00 0.00 3.18
4955 10538 1.198759 GGCAGTAGAAGGGGGTGTCA 61.199 60.000 0.00 0.00 0.00 3.58
4956 10539 0.910088 AGGCAGTAGAAGGGGGTGTC 60.910 60.000 0.00 0.00 0.00 3.67
4957 10540 0.475828 AAGGCAGTAGAAGGGGGTGT 60.476 55.000 0.00 0.00 0.00 4.16
4958 10541 0.035056 CAAGGCAGTAGAAGGGGGTG 60.035 60.000 0.00 0.00 0.00 4.61
4959 10542 1.208165 CCAAGGCAGTAGAAGGGGGT 61.208 60.000 0.00 0.00 0.00 4.95
4960 10543 1.609783 CCAAGGCAGTAGAAGGGGG 59.390 63.158 0.00 0.00 0.00 5.40
4961 10544 1.609783 CCCAAGGCAGTAGAAGGGG 59.390 63.158 0.00 0.00 32.59 4.79
4962 10545 1.609783 CCCCAAGGCAGTAGAAGGG 59.390 63.158 0.00 0.00 36.04 3.95
4963 10546 1.609783 CCCCCAAGGCAGTAGAAGG 59.390 63.158 0.00 0.00 0.00 3.46
4981 10564 3.419759 AACGAACATCCACCGCGC 61.420 61.111 0.00 0.00 0.00 6.86
4982 10565 2.474266 CAACGAACATCCACCGCG 59.526 61.111 0.00 0.00 0.00 6.46
4983 10566 1.922135 ATGCAACGAACATCCACCGC 61.922 55.000 0.00 0.00 0.00 5.68
4984 10567 0.179192 CATGCAACGAACATCCACCG 60.179 55.000 0.00 0.00 0.00 4.94
4985 10568 0.456653 GCATGCAACGAACATCCACC 60.457 55.000 14.21 0.00 0.00 4.61
4986 10569 0.240678 TGCATGCAACGAACATCCAC 59.759 50.000 20.30 0.00 0.00 4.02
4987 10570 1.135344 CATGCATGCAACGAACATCCA 60.135 47.619 26.68 0.00 0.00 3.41
4988 10571 1.552226 CATGCATGCAACGAACATCC 58.448 50.000 26.68 0.00 0.00 3.51
5000 10583 2.350899 TTCTTTGAACCGCATGCATG 57.649 45.000 22.70 22.70 0.00 4.06
5001 10584 2.557924 TCTTTCTTTGAACCGCATGCAT 59.442 40.909 19.57 1.32 0.00 3.96
5002 10585 1.952990 TCTTTCTTTGAACCGCATGCA 59.047 42.857 19.57 0.00 0.00 3.96
5003 10586 2.704725 TCTTTCTTTGAACCGCATGC 57.295 45.000 7.91 7.91 0.00 4.06
5004 10587 4.228912 AGTTCTTTCTTTGAACCGCATG 57.771 40.909 0.00 0.00 43.28 4.06
5005 10588 5.063880 AGTAGTTCTTTCTTTGAACCGCAT 58.936 37.500 0.00 0.00 43.28 4.73
5006 10589 4.448210 AGTAGTTCTTTCTTTGAACCGCA 58.552 39.130 0.00 0.00 43.28 5.69
5007 10590 4.083961 GGAGTAGTTCTTTCTTTGAACCGC 60.084 45.833 0.00 0.00 43.28 5.68
5008 10591 4.451435 GGGAGTAGTTCTTTCTTTGAACCG 59.549 45.833 0.00 0.00 43.28 4.44
5009 10592 5.622180 AGGGAGTAGTTCTTTCTTTGAACC 58.378 41.667 0.00 0.00 43.28 3.62
5010 10593 5.701750 GGAGGGAGTAGTTCTTTCTTTGAAC 59.298 44.000 0.00 0.00 42.77 3.18
5011 10594 5.510861 CGGAGGGAGTAGTTCTTTCTTTGAA 60.511 44.000 0.00 0.00 0.00 2.69
5012 10595 4.021368 CGGAGGGAGTAGTTCTTTCTTTGA 60.021 45.833 0.00 0.00 0.00 2.69
5013 10596 4.246458 CGGAGGGAGTAGTTCTTTCTTTG 58.754 47.826 0.00 0.00 0.00 2.77
5014 10597 3.902467 ACGGAGGGAGTAGTTCTTTCTTT 59.098 43.478 0.00 0.00 0.00 2.52
5015 10598 3.508426 ACGGAGGGAGTAGTTCTTTCTT 58.492 45.455 0.00 0.00 0.00 2.52
5016 10599 3.172471 ACGGAGGGAGTAGTTCTTTCT 57.828 47.619 0.00 0.00 0.00 2.52
5017 10600 3.368220 GGAACGGAGGGAGTAGTTCTTTC 60.368 52.174 7.05 0.00 41.72 2.62
5018 10601 2.566279 GGAACGGAGGGAGTAGTTCTTT 59.434 50.000 7.05 0.00 41.72 2.52
5019 10602 2.177734 GGAACGGAGGGAGTAGTTCTT 58.822 52.381 7.05 0.00 41.72 2.52
5020 10603 1.358445 AGGAACGGAGGGAGTAGTTCT 59.642 52.381 7.05 0.00 41.72 3.01
5021 10604 1.849977 AGGAACGGAGGGAGTAGTTC 58.150 55.000 0.00 0.00 41.40 3.01
5022 10605 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
5023 10606 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
5024 10607 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
5025 10608 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5026 10609 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5027 10610 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
5028 10611 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
5029 10612 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.