Multiple sequence alignment - TraesCS1A01G248000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G248000 chr1A 100.000 2312 0 0 1 2312 440028851 440031162 0.000000e+00 4270.0
1 TraesCS1A01G248000 chr1A 81.933 476 72 10 1395 1856 484294140 484294615 7.750000e-105 390.0
2 TraesCS1A01G248000 chr1A 80.547 329 54 8 1534 1856 313202883 313202559 6.380000e-61 244.0
3 TraesCS1A01G248000 chr1D 92.374 1390 60 17 1 1366 340299538 340300905 0.000000e+00 1938.0
4 TraesCS1A01G248000 chr1D 85.272 808 85 21 1370 2160 340301130 340301920 0.000000e+00 802.0
5 TraesCS1A01G248000 chr1D 78.415 366 56 13 1497 1840 20945326 20944962 1.390000e-52 217.0
6 TraesCS1A01G248000 chr1D 87.209 86 9 2 2161 2245 126535491 126535407 1.890000e-16 97.1
7 TraesCS1A01G248000 chr1D 96.970 33 1 0 2276 2308 340317556 340317588 3.210000e-04 56.5
8 TraesCS1A01G248000 chr1B 96.730 795 21 3 573 1366 455212124 455212914 0.000000e+00 1319.0
9 TraesCS1A01G248000 chr1B 96.402 528 16 3 1 527 455211440 455211965 0.000000e+00 867.0
10 TraesCS1A01G248000 chr1B 83.838 99 14 2 2160 2257 595741742 595741839 2.450000e-15 93.5
11 TraesCS1A01G248000 chr1B 83.673 98 14 2 2161 2257 401279676 401279772 8.800000e-15 91.6
12 TraesCS1A01G248000 chr5D 81.720 465 73 9 1388 1843 443309846 443310307 6.030000e-101 377.0
13 TraesCS1A01G248000 chr5D 80.913 482 69 16 1389 1851 446495833 446496310 2.180000e-95 359.0
14 TraesCS1A01G248000 chr5D 87.209 86 11 0 2161 2246 115124503 115124588 5.260000e-17 99.0
15 TraesCS1A01G248000 chr2B 80.892 471 70 14 1389 1842 152453583 152454050 1.020000e-93 353.0
16 TraesCS1A01G248000 chr2B 80.597 201 38 1 1656 1856 579488292 579488093 1.110000e-33 154.0
17 TraesCS1A01G248000 chr2B 87.234 94 11 1 2161 2253 754638901 754638808 3.140000e-19 106.0
18 TraesCS1A01G248000 chr2B 84.694 98 13 2 2161 2257 452029382 452029286 1.890000e-16 97.1
19 TraesCS1A01G248000 chr3D 80.000 485 72 16 1382 1851 85220133 85219659 3.680000e-88 335.0
20 TraesCS1A01G248000 chr3D 78.113 265 40 11 1899 2160 612800640 612800391 3.980000e-33 152.0
21 TraesCS1A01G248000 chr6B 78.675 483 84 9 1389 1856 659044369 659044847 1.040000e-78 303.0
22 TraesCS1A01G248000 chr5A 77.959 490 86 12 1387 1856 321054683 321054196 1.050000e-73 287.0
23 TraesCS1A01G248000 chr5A 78.618 463 77 14 1415 1856 608316311 608315850 1.050000e-73 287.0
24 TraesCS1A01G248000 chr5A 76.899 316 41 11 1860 2160 648903064 648903362 1.430000e-32 150.0
25 TraesCS1A01G248000 chr7B 81.096 365 60 8 1497 1856 388164739 388164379 1.350000e-72 283.0
26 TraesCS1A01G248000 chr7D 77.874 461 89 9 1387 1841 538911786 538912239 8.140000e-70 274.0
27 TraesCS1A01G248000 chr7D 81.910 199 32 4 1389 1584 203321730 203321927 5.110000e-37 165.0
28 TraesCS1A01G248000 chr2A 77.689 502 77 18 1389 1856 14497500 14498000 8.140000e-70 274.0
29 TraesCS1A01G248000 chr4D 77.929 367 57 13 1497 1840 73347473 73347108 8.370000e-50 207.0
30 TraesCS1A01G248000 chr4B 83.240 179 25 3 1659 1836 655629465 655629291 2.380000e-35 159.0
31 TraesCS1A01G248000 chr4B 83.673 98 14 2 2161 2257 287306458 287306554 8.800000e-15 91.6
32 TraesCS1A01G248000 chr5B 84.694 98 13 2 2161 2257 648808406 648808502 1.890000e-16 97.1
33 TraesCS1A01G248000 chr3B 83.673 98 14 2 2161 2257 705930678 705930774 8.800000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G248000 chr1A 440028851 440031162 2311 False 4270 4270 100.000 1 2312 1 chr1A.!!$F1 2311
1 TraesCS1A01G248000 chr1D 340299538 340301920 2382 False 1370 1938 88.823 1 2160 2 chr1D.!!$F2 2159
2 TraesCS1A01G248000 chr1B 455211440 455212914 1474 False 1093 1319 96.566 1 1366 2 chr1B.!!$F3 1365
3 TraesCS1A01G248000 chr2A 14497500 14498000 500 False 274 274 77.689 1389 1856 1 chr2A.!!$F1 467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 818 0.099436 CTTGCGTATGCCAAGGCTTC 59.901 55.0 12.96 2.11 41.78 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 2193 0.322456 GCAGTGCCTTGTGTCCCATA 60.322 55.0 2.85 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 9.274206 GGAAAATAGGAGGTAATTGTAGATGTC 57.726 37.037 0.00 0.00 0.00 3.06
233 234 4.159120 GAGTTTGCTCGCTGTAAATTTCC 58.841 43.478 0.00 0.00 33.14 3.13
281 282 2.078849 TGTCACTATGTCAGCGTTGG 57.921 50.000 0.00 0.00 0.00 3.77
283 284 1.067142 GTCACTATGTCAGCGTTGGGA 60.067 52.381 0.00 0.00 0.00 4.37
342 343 6.443849 TGGGAATCATAGACTTGGAACTAGTT 59.556 38.462 8.13 8.13 0.00 2.24
366 367 9.438291 GTTCAAATGATAAATTAGATGTGTCCG 57.562 33.333 0.00 0.00 0.00 4.79
367 368 7.639039 TCAAATGATAAATTAGATGTGTCCGC 58.361 34.615 0.00 0.00 0.00 5.54
368 369 7.281999 TCAAATGATAAATTAGATGTGTCCGCA 59.718 33.333 0.00 0.00 0.00 5.69
384 386 3.003275 GTCCGCAAACTTTCTGAATGTCA 59.997 43.478 9.08 0.00 0.00 3.58
449 451 4.034510 CCTGACTTCAAATCGACTATTGGC 59.965 45.833 7.37 0.00 0.00 4.52
547 676 8.593679 TGGAGTATATGTTTCTCTTTCAAGTGA 58.406 33.333 0.00 0.00 0.00 3.41
549 678 8.485976 AGTATATGTTTCTCTTTCAAGTGAGC 57.514 34.615 0.00 0.00 31.09 4.26
551 680 9.587772 GTATATGTTTCTCTTTCAAGTGAGCTA 57.412 33.333 0.00 0.00 31.09 3.32
552 681 6.793492 ATGTTTCTCTTTCAAGTGAGCTAC 57.207 37.500 0.00 0.00 31.09 3.58
553 682 5.918608 TGTTTCTCTTTCAAGTGAGCTACT 58.081 37.500 0.00 0.00 42.89 2.57
555 684 5.537300 TTCTCTTTCAAGTGAGCTACTGT 57.463 39.130 0.00 0.00 40.26 3.55
556 685 5.537300 TCTCTTTCAAGTGAGCTACTGTT 57.463 39.130 0.00 0.00 40.26 3.16
558 687 5.069119 TCTCTTTCAAGTGAGCTACTGTTGA 59.931 40.000 0.00 0.00 40.26 3.18
559 688 5.670485 TCTTTCAAGTGAGCTACTGTTGAA 58.330 37.500 8.27 8.27 40.26 2.69
560 689 6.291377 TCTTTCAAGTGAGCTACTGTTGAAT 58.709 36.000 11.63 0.00 40.26 2.57
561 690 6.767902 TCTTTCAAGTGAGCTACTGTTGAATT 59.232 34.615 11.63 0.00 40.26 2.17
562 691 6.942532 TTCAAGTGAGCTACTGTTGAATTT 57.057 33.333 8.27 0.00 40.26 1.82
563 692 6.942532 TCAAGTGAGCTACTGTTGAATTTT 57.057 33.333 0.00 0.00 40.26 1.82
564 693 8.445275 TTCAAGTGAGCTACTGTTGAATTTTA 57.555 30.769 8.27 0.00 40.26 1.52
565 694 8.621532 TCAAGTGAGCTACTGTTGAATTTTAT 57.378 30.769 0.00 0.00 40.26 1.40
566 695 9.066892 TCAAGTGAGCTACTGTTGAATTTTATT 57.933 29.630 0.00 0.00 40.26 1.40
567 696 9.683069 CAAGTGAGCTACTGTTGAATTTTATTT 57.317 29.630 0.00 0.00 40.26 1.40
569 698 9.683069 AGTGAGCTACTGTTGAATTTTATTTTG 57.317 29.630 0.00 0.00 38.49 2.44
600 729 3.607439 AGAATATTGCGTGCGATTTTCG 58.393 40.909 15.19 0.00 43.89 3.46
671 813 2.800736 GGCCTTGCGTATGCCAAG 59.199 61.111 4.05 8.09 44.70 3.61
672 814 2.774799 GGCCTTGCGTATGCCAAGG 61.775 63.158 23.23 23.23 44.91 3.61
673 815 2.800736 CCTTGCGTATGCCAAGGC 59.199 61.111 18.87 3.61 40.21 4.35
674 816 1.750399 CCTTGCGTATGCCAAGGCT 60.750 57.895 18.87 0.65 40.21 4.58
675 817 1.315257 CCTTGCGTATGCCAAGGCTT 61.315 55.000 18.87 8.68 40.21 4.35
676 818 0.099436 CTTGCGTATGCCAAGGCTTC 59.901 55.000 12.96 2.11 41.78 3.86
677 819 1.312371 TTGCGTATGCCAAGGCTTCC 61.312 55.000 12.96 0.00 41.78 3.46
678 820 1.748879 GCGTATGCCAAGGCTTCCA 60.749 57.895 12.96 0.00 42.51 3.53
679 821 1.993369 GCGTATGCCAAGGCTTCCAC 61.993 60.000 12.96 1.61 42.51 4.02
680 822 1.376609 CGTATGCCAAGGCTTCCACC 61.377 60.000 12.96 0.00 42.51 4.61
681 823 0.323360 GTATGCCAAGGCTTCCACCA 60.323 55.000 12.96 0.00 42.51 4.17
722 864 0.438830 GTTTGTCTTCCTACGCTGCG 59.561 55.000 21.91 21.91 0.00 5.18
779 924 1.552792 CCTTCCTTCCACTCTGGTCTC 59.447 57.143 0.00 0.00 39.03 3.36
821 967 1.379642 GGCTGCCAAGATACCTGCAC 61.380 60.000 15.17 0.00 0.00 4.57
822 968 0.677731 GCTGCCAAGATACCTGCACA 60.678 55.000 0.00 0.00 0.00 4.57
843 999 3.938019 TAAAGCGCGTCGGGTTCCC 62.938 63.158 8.43 0.00 0.00 3.97
853 1009 3.721868 GGGTTCCCATCCGACTCA 58.278 61.111 2.59 0.00 0.00 3.41
901 1057 1.375551 ACCATAATCCACGAAACGGC 58.624 50.000 0.00 0.00 0.00 5.68
1322 1484 0.179181 TCGTCGTAGTGATTGCGTCC 60.179 55.000 0.00 0.00 36.22 4.79
1366 1528 2.644798 AGTTTGTGGATTCTGGGCTAGT 59.355 45.455 0.00 0.00 0.00 2.57
1367 1529 3.074538 AGTTTGTGGATTCTGGGCTAGTT 59.925 43.478 0.00 0.00 0.00 2.24
1368 1530 2.787473 TGTGGATTCTGGGCTAGTTG 57.213 50.000 0.00 0.00 0.00 3.16
1393 1776 8.988060 TGTCTTTGTTATCTATGGTCATTAGGA 58.012 33.333 0.00 0.00 0.00 2.94
1410 1794 0.321653 GGACATCTCCAACGGCAACT 60.322 55.000 0.00 0.00 36.42 3.16
1411 1795 1.066430 GGACATCTCCAACGGCAACTA 60.066 52.381 0.00 0.00 36.42 2.24
1413 1797 1.009829 CATCTCCAACGGCAACTAGC 58.990 55.000 0.00 0.00 44.65 3.42
1465 1850 3.372795 GACCAGTCCACGAACACAA 57.627 52.632 0.00 0.00 0.00 3.33
1477 1862 0.804989 GAACACAAATGCGGGAGGAG 59.195 55.000 0.00 0.00 0.00 3.69
1494 1879 2.280457 GGACATCCAGCGCTAGCC 60.280 66.667 10.99 1.24 46.67 3.93
1495 1880 2.801631 GGACATCCAGCGCTAGCCT 61.802 63.158 10.99 4.42 46.67 4.58
1571 1977 4.331443 CCGGATTTCATACAAACATGACGA 59.669 41.667 0.00 0.00 34.69 4.20
1588 1994 9.773328 AACATGACGAATTTCATACAAATACAG 57.227 29.630 0.00 0.00 34.29 2.74
1610 2016 8.050778 ACAGCGGATTTCATTACATTTAGAAA 57.949 30.769 0.00 0.00 34.83 2.52
1663 2083 4.778143 GGCGCCCGATGTCCAAGT 62.778 66.667 18.11 0.00 0.00 3.16
1681 2101 0.175989 GTCCGTGTCCTCCTTCATCC 59.824 60.000 0.00 0.00 0.00 3.51
1690 2110 1.384525 CTCCTTCATCCGTCGTCTCT 58.615 55.000 0.00 0.00 0.00 3.10
1691 2111 1.064803 CTCCTTCATCCGTCGTCTCTG 59.935 57.143 0.00 0.00 0.00 3.35
1699 2119 1.794003 CGTCGTCTCTGTGAGCACG 60.794 63.158 10.78 10.78 35.89 5.34
1711 2131 2.000447 GTGAGCACGGACAATAAGACC 59.000 52.381 0.00 0.00 0.00 3.85
1732 2153 3.062763 CGATGAAGTGAAGTGCAGTCTT 58.937 45.455 0.00 0.00 0.00 3.01
1753 2174 1.405821 CGGCGAGGAAGAGTAGAACAT 59.594 52.381 0.00 0.00 0.00 2.71
1766 2187 2.334006 AGAACATGGGAGACAGACCT 57.666 50.000 0.00 0.00 0.00 3.85
1767 2188 3.474798 AGAACATGGGAGACAGACCTA 57.525 47.619 0.00 0.00 0.00 3.08
1772 2193 0.716591 TGGGAGACAGACCTACCCAT 59.283 55.000 0.00 0.00 44.50 4.00
1816 2237 1.906574 TCCCGTTGCCTACTCATTCTT 59.093 47.619 0.00 0.00 0.00 2.52
1825 2246 3.198853 GCCTACTCATTCTTGGAGGAGTT 59.801 47.826 1.41 0.00 41.01 3.01
1826 2247 4.323868 GCCTACTCATTCTTGGAGGAGTTT 60.324 45.833 1.41 0.00 41.01 2.66
1889 2310 8.079211 AGTGAAGTGGAGTTAGCATTATAAGA 57.921 34.615 0.00 0.00 0.00 2.10
1891 2312 8.768955 GTGAAGTGGAGTTAGCATTATAAGATG 58.231 37.037 0.00 0.00 0.00 2.90
1898 2319 7.600752 GGAGTTAGCATTATAAGATGAGACACC 59.399 40.741 0.00 0.00 0.00 4.16
1899 2320 7.445945 AGTTAGCATTATAAGATGAGACACCC 58.554 38.462 0.00 0.00 0.00 4.61
1906 2327 8.906867 CATTATAAGATGAGACACCCAAACATT 58.093 33.333 0.00 0.00 0.00 2.71
1930 2351 0.526954 CAAGCGATGGAAATGCAGCC 60.527 55.000 0.00 0.00 0.00 4.85
1931 2352 0.966875 AAGCGATGGAAATGCAGCCA 60.967 50.000 8.02 8.02 38.78 4.75
1939 2361 2.298729 TGGAAATGCAGCCAAGGTTTAC 59.701 45.455 3.48 0.00 0.00 2.01
2024 2446 2.432628 GCAACGGTGGAGTCGAGG 60.433 66.667 0.90 0.00 0.00 4.63
2049 2471 7.491048 GGTAGAGTTGAGAAGCTGATAAAAGAG 59.509 40.741 0.00 0.00 0.00 2.85
2052 2474 8.320617 AGAGTTGAGAAGCTGATAAAAGAGAAT 58.679 33.333 0.00 0.00 0.00 2.40
2121 2553 2.428544 AGTAATGGCGGCAATGGTAA 57.571 45.000 18.31 0.00 0.00 2.85
2131 2563 2.529151 GGCAATGGTAAAAGATGCACG 58.471 47.619 0.00 0.00 38.73 5.34
2133 2565 2.670789 GCAATGGTAAAAGATGCACGCA 60.671 45.455 0.00 0.00 37.00 5.24
2139 2571 2.989422 AAAAGATGCACGCACTAACC 57.011 45.000 0.00 0.00 0.00 2.85
2143 2575 1.067425 AGATGCACGCACTAACCGTTA 60.067 47.619 0.00 0.00 36.69 3.18
2160 2592 3.119101 CCGTTATGGTCTGCTAGACTGTT 60.119 47.826 13.59 4.76 44.46 3.16
2161 2593 4.097437 CCGTTATGGTCTGCTAGACTGTTA 59.903 45.833 13.59 4.06 44.46 2.41
2162 2594 5.035443 CGTTATGGTCTGCTAGACTGTTAC 58.965 45.833 13.59 7.72 44.46 2.50
2163 2595 5.163642 CGTTATGGTCTGCTAGACTGTTACT 60.164 44.000 13.59 0.00 44.46 2.24
2164 2596 4.993029 ATGGTCTGCTAGACTGTTACTC 57.007 45.455 13.59 0.31 44.46 2.59
2165 2597 3.090037 TGGTCTGCTAGACTGTTACTCC 58.910 50.000 13.59 0.00 44.46 3.85
2166 2598 3.245300 TGGTCTGCTAGACTGTTACTCCT 60.245 47.826 13.59 0.00 44.46 3.69
2167 2599 3.764972 GGTCTGCTAGACTGTTACTCCTT 59.235 47.826 13.59 0.00 44.46 3.36
2168 2600 4.142337 GGTCTGCTAGACTGTTACTCCTTC 60.142 50.000 13.59 0.00 44.46 3.46
2169 2601 4.703093 GTCTGCTAGACTGTTACTCCTTCT 59.297 45.833 0.00 0.00 41.88 2.85
2170 2602 4.702612 TCTGCTAGACTGTTACTCCTTCTG 59.297 45.833 0.00 0.00 0.00 3.02
2171 2603 4.408276 TGCTAGACTGTTACTCCTTCTGT 58.592 43.478 0.00 0.00 0.00 3.41
2172 2604 4.459685 TGCTAGACTGTTACTCCTTCTGTC 59.540 45.833 0.00 0.00 0.00 3.51
2173 2605 4.703093 GCTAGACTGTTACTCCTTCTGTCT 59.297 45.833 0.00 0.00 41.05 3.41
2174 2606 5.184287 GCTAGACTGTTACTCCTTCTGTCTT 59.816 44.000 0.00 0.00 39.64 3.01
2175 2607 6.374894 GCTAGACTGTTACTCCTTCTGTCTTA 59.625 42.308 0.00 0.00 39.64 2.10
2176 2608 7.067737 GCTAGACTGTTACTCCTTCTGTCTTAT 59.932 40.741 0.00 0.00 39.64 1.73
2177 2609 9.616156 CTAGACTGTTACTCCTTCTGTCTTATA 57.384 37.037 8.63 0.00 39.64 0.98
2178 2610 8.880991 AGACTGTTACTCCTTCTGTCTTATAA 57.119 34.615 0.00 0.00 37.18 0.98
2179 2611 9.482175 AGACTGTTACTCCTTCTGTCTTATAAT 57.518 33.333 0.00 0.00 37.18 1.28
2247 2679 2.822707 TGGGACAGAGGGAGTAGTAC 57.177 55.000 0.00 0.00 0.00 2.73
2248 2680 2.285707 TGGGACAGAGGGAGTAGTACT 58.714 52.381 1.37 1.37 0.00 2.73
2249 2681 2.653366 TGGGACAGAGGGAGTAGTACTT 59.347 50.000 0.00 0.00 0.00 2.24
2250 2682 3.854389 TGGGACAGAGGGAGTAGTACTTA 59.146 47.826 0.00 0.00 0.00 2.24
2251 2683 4.293102 TGGGACAGAGGGAGTAGTACTTAA 59.707 45.833 0.00 0.00 0.00 1.85
2252 2684 4.644234 GGGACAGAGGGAGTAGTACTTAAC 59.356 50.000 0.00 0.00 0.00 2.01
2253 2685 5.508567 GGACAGAGGGAGTAGTACTTAACT 58.491 45.833 0.00 0.00 42.62 2.24
2254 2686 6.353429 GGGACAGAGGGAGTAGTACTTAACTA 60.353 46.154 0.00 0.00 39.80 2.24
2255 2687 7.289310 GGACAGAGGGAGTAGTACTTAACTAT 58.711 42.308 0.00 0.00 42.63 2.12
2256 2688 7.445096 GGACAGAGGGAGTAGTACTTAACTATC 59.555 44.444 0.00 0.00 42.63 2.08
2257 2689 8.104838 ACAGAGGGAGTAGTACTTAACTATCT 57.895 38.462 0.00 1.75 42.63 1.98
2258 2690 7.994334 ACAGAGGGAGTAGTACTTAACTATCTG 59.006 40.741 20.62 20.62 42.91 2.90
2259 2691 6.999871 AGAGGGAGTAGTACTTAACTATCTGC 59.000 42.308 0.00 0.00 42.63 4.26
2260 2692 6.913545 AGGGAGTAGTACTTAACTATCTGCT 58.086 40.000 0.00 0.00 42.63 4.24
2261 2693 8.043429 AGGGAGTAGTACTTAACTATCTGCTA 57.957 38.462 0.00 0.00 42.63 3.49
2262 2694 8.158789 AGGGAGTAGTACTTAACTATCTGCTAG 58.841 40.741 0.00 0.00 42.63 3.42
2263 2695 8.156165 GGGAGTAGTACTTAACTATCTGCTAGA 58.844 40.741 0.00 0.00 42.63 2.43
2264 2696 8.992073 GGAGTAGTACTTAACTATCTGCTAGAC 58.008 40.741 0.00 0.00 42.63 2.59
2265 2697 9.768662 GAGTAGTACTTAACTATCTGCTAGACT 57.231 37.037 0.00 0.00 42.63 3.24
2266 2698 9.550406 AGTAGTACTTAACTATCTGCTAGACTG 57.450 37.037 0.00 0.00 42.63 3.51
2267 2699 9.328845 GTAGTACTTAACTATCTGCTAGACTGT 57.671 37.037 0.00 0.00 42.63 3.55
2268 2700 8.441312 AGTACTTAACTATCTGCTAGACTGTC 57.559 38.462 0.00 0.00 36.36 3.51
2269 2701 8.047911 AGTACTTAACTATCTGCTAGACTGTCA 58.952 37.037 10.88 0.00 36.36 3.58
2270 2702 7.328277 ACTTAACTATCTGCTAGACTGTCAG 57.672 40.000 10.88 0.00 0.00 3.51
2271 2703 6.887545 ACTTAACTATCTGCTAGACTGTCAGT 59.112 38.462 4.81 4.81 0.00 3.41
2272 2704 8.047911 ACTTAACTATCTGCTAGACTGTCAGTA 58.952 37.037 5.21 4.53 0.00 2.74
2273 2705 6.687081 AACTATCTGCTAGACTGTCAGTAC 57.313 41.667 5.21 0.00 0.00 2.73
2274 2706 5.996644 ACTATCTGCTAGACTGTCAGTACT 58.003 41.667 5.21 7.70 0.00 2.73
2275 2707 6.419791 ACTATCTGCTAGACTGTCAGTACTT 58.580 40.000 5.21 0.00 0.00 2.24
2276 2708 7.566569 ACTATCTGCTAGACTGTCAGTACTTA 58.433 38.462 5.21 0.00 0.00 2.24
2277 2709 8.047911 ACTATCTGCTAGACTGTCAGTACTTAA 58.952 37.037 5.21 0.00 0.00 1.85
2278 2710 6.497785 TCTGCTAGACTGTCAGTACTTAAC 57.502 41.667 5.21 0.00 0.00 2.01
2279 2711 6.002082 TCTGCTAGACTGTCAGTACTTAACA 58.998 40.000 5.21 7.46 0.00 2.41
2280 2712 6.489022 TCTGCTAGACTGTCAGTACTTAACAA 59.511 38.462 5.21 0.00 0.00 2.83
2281 2713 6.444633 TGCTAGACTGTCAGTACTTAACAAC 58.555 40.000 5.21 6.61 0.00 3.32
2282 2714 6.264744 TGCTAGACTGTCAGTACTTAACAACT 59.735 38.462 5.21 11.71 0.00 3.16
2283 2715 7.146648 GCTAGACTGTCAGTACTTAACAACTT 58.853 38.462 5.21 1.77 0.00 2.66
2284 2716 8.295288 GCTAGACTGTCAGTACTTAACAACTTA 58.705 37.037 5.21 2.58 0.00 2.24
2287 2719 7.599245 AGACTGTCAGTACTTAACAACTTATGC 59.401 37.037 5.21 0.00 0.00 3.14
2288 2720 6.649557 ACTGTCAGTACTTAACAACTTATGCC 59.350 38.462 2.87 0.00 0.00 4.40
2289 2721 6.765403 TGTCAGTACTTAACAACTTATGCCT 58.235 36.000 5.56 0.00 0.00 4.75
2290 2722 7.898918 TGTCAGTACTTAACAACTTATGCCTA 58.101 34.615 5.56 0.00 0.00 3.93
2291 2723 7.816031 TGTCAGTACTTAACAACTTATGCCTAC 59.184 37.037 5.56 0.00 0.00 3.18
2292 2724 8.033626 GTCAGTACTTAACAACTTATGCCTACT 58.966 37.037 0.00 0.00 0.00 2.57
2293 2725 8.033038 TCAGTACTTAACAACTTATGCCTACTG 58.967 37.037 0.00 0.00 0.00 2.74
2294 2726 8.033038 CAGTACTTAACAACTTATGCCTACTGA 58.967 37.037 0.00 0.00 32.83 3.41
2295 2727 8.591072 AGTACTTAACAACTTATGCCTACTGAA 58.409 33.333 0.00 0.00 0.00 3.02
2296 2728 7.907214 ACTTAACAACTTATGCCTACTGAAG 57.093 36.000 0.00 0.00 0.00 3.02
2297 2729 7.450903 ACTTAACAACTTATGCCTACTGAAGT 58.549 34.615 0.00 0.00 33.60 3.01
2298 2730 8.591072 ACTTAACAACTTATGCCTACTGAAGTA 58.409 33.333 0.00 0.00 31.96 2.24
2299 2731 8.997621 TTAACAACTTATGCCTACTGAAGTAG 57.002 34.615 10.05 10.05 45.68 2.57
2300 2732 5.420409 ACAACTTATGCCTACTGAAGTAGC 58.580 41.667 11.33 8.04 44.97 3.58
2301 2733 5.046591 ACAACTTATGCCTACTGAAGTAGCA 60.047 40.000 11.33 12.50 44.97 3.49
2302 2734 5.269505 ACTTATGCCTACTGAAGTAGCAG 57.730 43.478 11.33 0.00 44.97 4.24
2303 2735 2.611225 ATGCCTACTGAAGTAGCAGC 57.389 50.000 11.33 10.70 44.97 5.25
2304 2736 1.266178 TGCCTACTGAAGTAGCAGCA 58.734 50.000 13.93 13.93 44.97 4.41
2305 2737 1.623311 TGCCTACTGAAGTAGCAGCAA 59.377 47.619 14.99 4.15 44.97 3.91
2306 2738 2.003301 GCCTACTGAAGTAGCAGCAAC 58.997 52.381 11.33 0.00 44.97 4.17
2307 2739 2.612972 GCCTACTGAAGTAGCAGCAACA 60.613 50.000 11.33 0.00 44.97 3.33
2308 2740 3.866651 CCTACTGAAGTAGCAGCAACAT 58.133 45.455 11.33 0.00 44.97 2.71
2309 2741 3.620374 CCTACTGAAGTAGCAGCAACATG 59.380 47.826 11.33 0.00 44.97 3.21
2310 2742 2.430465 ACTGAAGTAGCAGCAACATGG 58.570 47.619 0.00 0.00 39.51 3.66
2311 2743 1.741706 CTGAAGTAGCAGCAACATGGG 59.258 52.381 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 234 5.186996 ACAAGGTTCAAATTGCTACTGTG 57.813 39.130 0.00 0.00 0.00 3.66
281 282 0.541863 ACCGTCCCAGTGATGAATCC 59.458 55.000 0.00 0.00 31.07 3.01
283 284 1.139058 GCTACCGTCCCAGTGATGAAT 59.861 52.381 0.00 0.00 31.07 2.57
342 343 7.281999 TGCGGACACATCTAATTTATCATTTGA 59.718 33.333 0.00 0.00 0.00 2.69
366 367 4.207841 GTGCTTGACATTCAGAAAGTTTGC 59.792 41.667 0.00 0.00 0.00 3.68
367 368 4.438797 CGTGCTTGACATTCAGAAAGTTTG 59.561 41.667 0.00 0.00 0.00 2.93
368 369 4.096382 ACGTGCTTGACATTCAGAAAGTTT 59.904 37.500 0.00 0.00 0.00 2.66
384 386 5.763204 CCACCTTATAATATTCCACGTGCTT 59.237 40.000 10.91 0.00 0.00 3.91
449 451 1.129811 GCCGGGATTTTGTTGACTACG 59.870 52.381 2.18 0.00 0.00 3.51
537 543 5.991328 TTCAACAGTAGCTCACTTGAAAG 57.009 39.130 0.00 0.00 33.18 2.62
547 676 7.384932 GTGCCAAAATAAAATTCAACAGTAGCT 59.615 33.333 0.00 0.00 0.00 3.32
549 678 8.702438 CAGTGCCAAAATAAAATTCAACAGTAG 58.298 33.333 0.00 0.00 0.00 2.57
551 680 6.482973 CCAGTGCCAAAATAAAATTCAACAGT 59.517 34.615 0.00 0.00 0.00 3.55
552 681 6.705381 TCCAGTGCCAAAATAAAATTCAACAG 59.295 34.615 0.00 0.00 0.00 3.16
553 682 6.586344 TCCAGTGCCAAAATAAAATTCAACA 58.414 32.000 0.00 0.00 0.00 3.33
555 684 7.015098 TCTCTCCAGTGCCAAAATAAAATTCAA 59.985 33.333 0.00 0.00 0.00 2.69
556 685 6.493115 TCTCTCCAGTGCCAAAATAAAATTCA 59.507 34.615 0.00 0.00 0.00 2.57
558 687 6.916360 TCTCTCCAGTGCCAAAATAAAATT 57.084 33.333 0.00 0.00 0.00 1.82
559 688 6.916360 TTCTCTCCAGTGCCAAAATAAAAT 57.084 33.333 0.00 0.00 0.00 1.82
560 689 6.916360 ATTCTCTCCAGTGCCAAAATAAAA 57.084 33.333 0.00 0.00 0.00 1.52
561 690 8.469200 CAATATTCTCTCCAGTGCCAAAATAAA 58.531 33.333 0.00 0.00 0.00 1.40
562 691 7.416664 GCAATATTCTCTCCAGTGCCAAAATAA 60.417 37.037 0.00 0.00 0.00 1.40
563 692 6.039717 GCAATATTCTCTCCAGTGCCAAAATA 59.960 38.462 0.00 0.00 0.00 1.40
564 693 5.163478 GCAATATTCTCTCCAGTGCCAAAAT 60.163 40.000 0.00 0.00 0.00 1.82
565 694 4.158394 GCAATATTCTCTCCAGTGCCAAAA 59.842 41.667 0.00 0.00 0.00 2.44
566 695 3.696051 GCAATATTCTCTCCAGTGCCAAA 59.304 43.478 0.00 0.00 0.00 3.28
567 696 3.282021 GCAATATTCTCTCCAGTGCCAA 58.718 45.455 0.00 0.00 0.00 4.52
568 697 2.742856 CGCAATATTCTCTCCAGTGCCA 60.743 50.000 0.00 0.00 0.00 4.92
569 698 1.869767 CGCAATATTCTCTCCAGTGCC 59.130 52.381 0.00 0.00 0.00 5.01
600 729 3.234386 GCTCGTATTTTCCAACAAGCAC 58.766 45.455 0.00 0.00 0.00 4.40
670 812 2.081585 GAAAGGGGTGGTGGAAGCCT 62.082 60.000 0.00 0.00 37.86 4.58
671 813 1.606601 GAAAGGGGTGGTGGAAGCC 60.607 63.158 0.00 0.00 36.97 4.35
672 814 1.606601 GGAAAGGGGTGGTGGAAGC 60.607 63.158 0.00 0.00 0.00 3.86
673 815 1.303317 CGGAAAGGGGTGGTGGAAG 60.303 63.158 0.00 0.00 0.00 3.46
674 816 2.836187 CCGGAAAGGGGTGGTGGAA 61.836 63.158 0.00 0.00 35.97 3.53
675 817 3.253838 CCGGAAAGGGGTGGTGGA 61.254 66.667 0.00 0.00 35.97 4.02
676 818 1.276140 TATCCGGAAAGGGGTGGTGG 61.276 60.000 9.01 0.00 41.52 4.61
677 819 0.621609 TTATCCGGAAAGGGGTGGTG 59.378 55.000 9.01 0.00 41.52 4.17
678 820 1.374572 TTTATCCGGAAAGGGGTGGT 58.625 50.000 9.01 0.00 41.52 4.16
679 821 2.097036 GTTTTATCCGGAAAGGGGTGG 58.903 52.381 9.01 0.00 41.52 4.61
680 822 2.797786 TGTTTTATCCGGAAAGGGGTG 58.202 47.619 9.01 0.00 41.52 4.61
681 823 3.159472 GTTGTTTTATCCGGAAAGGGGT 58.841 45.455 9.01 0.00 41.52 4.95
722 864 3.688673 AGAGTAGAGCACACGTAACCTAC 59.311 47.826 0.00 0.00 0.00 3.18
779 924 8.355913 AGCCAAGTTCATTCTTTTCTTAGAAAG 58.644 33.333 7.49 3.26 37.66 2.62
821 967 1.562575 AACCCGACGCGCTTTAGTTG 61.563 55.000 5.73 0.00 0.00 3.16
822 968 1.287041 GAACCCGACGCGCTTTAGTT 61.287 55.000 5.73 3.61 0.00 2.24
843 999 1.141881 CCCGGAACTGAGTCGGATG 59.858 63.158 13.57 0.00 45.96 3.51
901 1057 2.510012 TGCTCGATTGCTCGGCTG 60.510 61.111 9.16 0.00 45.10 4.85
1071 1227 3.461773 CCCTCCATCCTGACGCGT 61.462 66.667 13.85 13.85 0.00 6.01
1193 1355 2.182030 CGTCCCGTCTCTTCCTGC 59.818 66.667 0.00 0.00 0.00 4.85
1322 1484 5.240891 TGCTCTAAAACATCAGTTGAGGAG 58.759 41.667 0.26 0.00 38.17 3.69
1366 1528 9.613428 CCTAATGACCATAGATAACAAAGACAA 57.387 33.333 0.00 0.00 0.00 3.18
1367 1529 8.988060 TCCTAATGACCATAGATAACAAAGACA 58.012 33.333 0.00 0.00 0.00 3.41
1368 1530 9.262358 GTCCTAATGACCATAGATAACAAAGAC 57.738 37.037 0.00 0.00 38.09 3.01
1393 1776 1.676014 GCTAGTTGCCGTTGGAGATGT 60.676 52.381 0.00 0.00 35.15 3.06
1400 1784 4.298332 AGAAAATTTGCTAGTTGCCGTTG 58.702 39.130 0.00 0.00 42.00 4.10
1410 1794 4.764823 ACGAATGTGGGAGAAAATTTGCTA 59.235 37.500 0.00 0.00 0.00 3.49
1411 1795 3.573967 ACGAATGTGGGAGAAAATTTGCT 59.426 39.130 0.00 0.00 0.00 3.91
1413 1797 4.485163 GGACGAATGTGGGAGAAAATTTG 58.515 43.478 0.00 0.00 0.00 2.32
1465 1850 1.700042 GGATGTCCTCCTCCCGCATT 61.700 60.000 0.00 0.00 41.29 3.56
1477 1862 2.280457 GGCTAGCGCTGGATGTCC 60.280 66.667 26.32 12.24 36.09 4.02
1486 1871 5.007724 AGTTTAAAATGTATGAGGCTAGCGC 59.992 40.000 9.00 0.00 0.00 5.92
1516 1903 5.359292 TGCATGAATTTCATCCGGTTTGATA 59.641 36.000 8.95 2.02 34.28 2.15
1518 1905 3.509184 TGCATGAATTTCATCCGGTTTGA 59.491 39.130 8.95 3.23 34.28 2.69
1547 1934 4.495679 CGTCATGTTTGTATGAAATCCGGG 60.496 45.833 0.00 0.00 38.69 5.73
1551 1938 9.340695 TGAAATTCGTCATGTTTGTATGAAATC 57.659 29.630 0.00 0.00 38.69 2.17
1571 1977 8.465999 TGAAATCCGCTGTATTTGTATGAAATT 58.534 29.630 0.00 0.00 0.00 1.82
1584 1990 8.725405 TTCTAAATGTAATGAAATCCGCTGTA 57.275 30.769 0.00 0.00 0.00 2.74
1586 1992 8.909708 TTTTCTAAATGTAATGAAATCCGCTG 57.090 30.769 0.00 0.00 0.00 5.18
1614 2034 3.981375 GGATAGGTTTAGGGGTGGATCTT 59.019 47.826 0.00 0.00 0.00 2.40
1618 2038 3.692187 CGTAGGATAGGTTTAGGGGTGGA 60.692 52.174 0.00 0.00 0.00 4.02
1654 2074 0.608640 GAGGACACGGACTTGGACAT 59.391 55.000 0.00 0.00 0.00 3.06
1663 2083 1.320344 CGGATGAAGGAGGACACGGA 61.320 60.000 0.00 0.00 0.00 4.69
1681 2101 1.794003 CGTGCTCACAGAGACGACG 60.794 63.158 11.05 0.00 36.28 5.12
1690 2110 2.611971 GGTCTTATTGTCCGTGCTCACA 60.612 50.000 0.69 0.00 0.00 3.58
1691 2111 2.000447 GGTCTTATTGTCCGTGCTCAC 59.000 52.381 0.00 0.00 0.00 3.51
1699 2119 4.755411 TCACTTCATCGGTCTTATTGTCC 58.245 43.478 0.00 0.00 0.00 4.02
1711 2131 2.681706 AGACTGCACTTCACTTCATCG 58.318 47.619 0.00 0.00 0.00 3.84
1732 2153 1.093159 GTTCTACTCTTCCTCGCCGA 58.907 55.000 0.00 0.00 0.00 5.54
1753 2174 2.179591 TGGGTAGGTCTGTCTCCCA 58.820 57.895 0.00 0.00 44.76 4.37
1772 2193 0.322456 GCAGTGCCTTGTGTCCCATA 60.322 55.000 2.85 0.00 0.00 2.74
1802 2223 2.768527 CTCCTCCAAGAATGAGTAGGCA 59.231 50.000 0.00 0.00 0.00 4.75
1816 2237 1.371183 CAGGTCGCAAACTCCTCCA 59.629 57.895 0.00 0.00 0.00 3.86
1889 2310 6.723298 TGTAAAAATGTTTGGGTGTCTCAT 57.277 33.333 0.00 0.00 0.00 2.90
1891 2312 5.462068 GCTTGTAAAAATGTTTGGGTGTCTC 59.538 40.000 0.00 0.00 0.00 3.36
1898 2319 5.226396 TCCATCGCTTGTAAAAATGTTTGG 58.774 37.500 0.00 0.00 0.00 3.28
1899 2320 6.761731 TTCCATCGCTTGTAAAAATGTTTG 57.238 33.333 0.00 0.00 0.00 2.93
1906 2327 4.484236 CTGCATTTCCATCGCTTGTAAAA 58.516 39.130 0.00 0.00 0.00 1.52
1930 2351 6.592798 TTCGTTCAACTACAGTAAACCTTG 57.407 37.500 0.00 0.00 0.00 3.61
1931 2352 6.037500 GGTTTCGTTCAACTACAGTAAACCTT 59.962 38.462 12.08 0.00 40.77 3.50
1939 2361 5.444613 CGATGATGGTTTCGTTCAACTACAG 60.445 44.000 0.00 0.00 0.00 2.74
2013 2435 2.420722 CTCAACTCTACCTCGACTCCAC 59.579 54.545 0.00 0.00 0.00 4.02
2015 2437 2.988570 TCTCAACTCTACCTCGACTCC 58.011 52.381 0.00 0.00 0.00 3.85
2024 2446 8.247562 TCTCTTTTATCAGCTTCTCAACTCTAC 58.752 37.037 0.00 0.00 0.00 2.59
2087 2519 6.204359 CGCCATTACTACTTGACGTATAAGT 58.796 40.000 18.22 18.22 41.06 2.24
2101 2533 3.562343 TTACCATTGCCGCCATTACTA 57.438 42.857 0.00 0.00 0.00 1.82
2121 2553 0.796312 CGGTTAGTGCGTGCATCTTT 59.204 50.000 0.00 0.00 0.00 2.52
2139 2571 3.784701 ACAGTCTAGCAGACCATAACG 57.215 47.619 11.24 0.00 46.18 3.18
2143 2575 3.702045 GGAGTAACAGTCTAGCAGACCAT 59.298 47.826 11.24 3.35 46.18 3.55
2218 2650 5.318889 ACTCCCTCTGTCCCATAATATAGGA 59.681 44.000 0.00 0.00 0.00 2.94
2219 2651 5.594777 ACTCCCTCTGTCCCATAATATAGG 58.405 45.833 0.00 0.00 0.00 2.57
2220 2652 7.415086 ACTACTCCCTCTGTCCCATAATATAG 58.585 42.308 0.00 0.00 0.00 1.31
2221 2653 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
2222 2654 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
2223 2655 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
2224 2656 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2225 2657 4.481280 AGTACTACTCCCTCTGTCCCATAA 59.519 45.833 0.00 0.00 0.00 1.90
2226 2658 4.052922 AGTACTACTCCCTCTGTCCCATA 58.947 47.826 0.00 0.00 0.00 2.74
2227 2659 2.860041 AGTACTACTCCCTCTGTCCCAT 59.140 50.000 0.00 0.00 0.00 4.00
2228 2660 2.285707 AGTACTACTCCCTCTGTCCCA 58.714 52.381 0.00 0.00 0.00 4.37
2229 2661 3.385314 AAGTACTACTCCCTCTGTCCC 57.615 52.381 0.00 0.00 0.00 4.46
2230 2662 5.508567 AGTTAAGTACTACTCCCTCTGTCC 58.491 45.833 0.00 0.00 34.56 4.02
2231 2663 8.212995 AGATAGTTAAGTACTACTCCCTCTGTC 58.787 40.741 1.48 0.86 41.99 3.51
2232 2664 7.994334 CAGATAGTTAAGTACTACTCCCTCTGT 59.006 40.741 16.13 3.06 41.99 3.41
2233 2665 7.040961 GCAGATAGTTAAGTACTACTCCCTCTG 60.041 44.444 18.07 18.07 41.99 3.35
2234 2666 6.999871 GCAGATAGTTAAGTACTACTCCCTCT 59.000 42.308 1.48 1.85 41.99 3.69
2235 2667 6.999871 AGCAGATAGTTAAGTACTACTCCCTC 59.000 42.308 1.48 0.00 41.99 4.30
2236 2668 6.913545 AGCAGATAGTTAAGTACTACTCCCT 58.086 40.000 1.48 0.00 41.99 4.20
2237 2669 8.156165 TCTAGCAGATAGTTAAGTACTACTCCC 58.844 40.741 1.48 0.00 41.99 4.30
2238 2670 8.992073 GTCTAGCAGATAGTTAAGTACTACTCC 58.008 40.741 1.48 0.00 41.99 3.85
2239 2671 9.768662 AGTCTAGCAGATAGTTAAGTACTACTC 57.231 37.037 1.48 0.00 41.99 2.59
2240 2672 9.550406 CAGTCTAGCAGATAGTTAAGTACTACT 57.450 37.037 0.00 0.00 41.99 2.57
2241 2673 9.328845 ACAGTCTAGCAGATAGTTAAGTACTAC 57.671 37.037 0.00 0.00 41.99 2.73
2242 2674 9.545105 GACAGTCTAGCAGATAGTTAAGTACTA 57.455 37.037 0.00 0.00 43.29 1.82
2243 2675 8.047911 TGACAGTCTAGCAGATAGTTAAGTACT 58.952 37.037 1.31 0.00 41.04 2.73
2244 2676 8.211116 TGACAGTCTAGCAGATAGTTAAGTAC 57.789 38.462 1.31 0.00 32.85 2.73
2245 2677 8.047911 ACTGACAGTCTAGCAGATAGTTAAGTA 58.952 37.037 1.07 0.00 33.94 2.24
2246 2678 6.887545 ACTGACAGTCTAGCAGATAGTTAAGT 59.112 38.462 1.07 0.00 33.94 2.24
2247 2679 7.328277 ACTGACAGTCTAGCAGATAGTTAAG 57.672 40.000 1.07 0.00 33.94 1.85
2248 2680 8.047911 AGTACTGACAGTCTAGCAGATAGTTAA 58.952 37.037 12.39 0.00 33.94 2.01
2249 2681 7.566569 AGTACTGACAGTCTAGCAGATAGTTA 58.433 38.462 12.39 0.00 33.94 2.24
2250 2682 6.419791 AGTACTGACAGTCTAGCAGATAGTT 58.580 40.000 12.39 0.00 33.94 2.24
2251 2683 5.996644 AGTACTGACAGTCTAGCAGATAGT 58.003 41.667 12.39 0.00 33.94 2.12
2252 2684 6.935741 AAGTACTGACAGTCTAGCAGATAG 57.064 41.667 12.39 0.00 33.94 2.08
2253 2685 7.827729 TGTTAAGTACTGACAGTCTAGCAGATA 59.172 37.037 12.39 0.00 33.94 1.98
2254 2686 6.659668 TGTTAAGTACTGACAGTCTAGCAGAT 59.340 38.462 12.39 0.00 33.94 2.90
2255 2687 6.002082 TGTTAAGTACTGACAGTCTAGCAGA 58.998 40.000 12.39 0.00 33.94 4.26
2256 2688 6.255596 TGTTAAGTACTGACAGTCTAGCAG 57.744 41.667 12.39 0.00 35.81 4.24
2257 2689 6.264744 AGTTGTTAAGTACTGACAGTCTAGCA 59.735 38.462 12.39 7.86 0.00 3.49
2258 2690 6.679843 AGTTGTTAAGTACTGACAGTCTAGC 58.320 40.000 12.39 5.44 0.00 3.42
2261 2693 7.599245 GCATAAGTTGTTAAGTACTGACAGTCT 59.401 37.037 12.39 6.56 0.00 3.24
2262 2694 7.148623 GGCATAAGTTGTTAAGTACTGACAGTC 60.149 40.741 12.39 4.22 0.00 3.51
2263 2695 6.649557 GGCATAAGTTGTTAAGTACTGACAGT 59.350 38.462 13.68 13.68 0.00 3.55
2264 2696 6.874134 AGGCATAAGTTGTTAAGTACTGACAG 59.126 38.462 10.99 0.00 0.00 3.51
2265 2697 6.765403 AGGCATAAGTTGTTAAGTACTGACA 58.235 36.000 0.00 1.86 0.00 3.58
2266 2698 8.033626 AGTAGGCATAAGTTGTTAAGTACTGAC 58.966 37.037 0.00 0.00 0.00 3.51
2267 2699 8.033038 CAGTAGGCATAAGTTGTTAAGTACTGA 58.967 37.037 0.00 0.00 0.00 3.41
2268 2700 8.033038 TCAGTAGGCATAAGTTGTTAAGTACTG 58.967 37.037 0.00 0.00 0.00 2.74
2269 2701 8.130671 TCAGTAGGCATAAGTTGTTAAGTACT 57.869 34.615 0.00 0.00 0.00 2.73
2270 2702 8.767478 TTCAGTAGGCATAAGTTGTTAAGTAC 57.233 34.615 0.00 0.00 0.00 2.73
2271 2703 8.591072 ACTTCAGTAGGCATAAGTTGTTAAGTA 58.409 33.333 0.00 0.00 0.00 2.24
2272 2704 7.450903 ACTTCAGTAGGCATAAGTTGTTAAGT 58.549 34.615 0.00 0.00 0.00 2.24
2273 2705 7.907214 ACTTCAGTAGGCATAAGTTGTTAAG 57.093 36.000 0.00 0.00 0.00 1.85
2274 2706 7.548075 GCTACTTCAGTAGGCATAAGTTGTTAA 59.452 37.037 14.53 0.00 46.07 2.01
2275 2707 7.039882 GCTACTTCAGTAGGCATAAGTTGTTA 58.960 38.462 14.53 0.00 46.07 2.41
2276 2708 5.875359 GCTACTTCAGTAGGCATAAGTTGTT 59.125 40.000 14.53 0.00 46.07 2.83
2277 2709 5.046591 TGCTACTTCAGTAGGCATAAGTTGT 60.047 40.000 14.53 0.00 46.07 3.32
2278 2710 5.419542 TGCTACTTCAGTAGGCATAAGTTG 58.580 41.667 14.53 0.00 46.07 3.16
2279 2711 5.665459 CTGCTACTTCAGTAGGCATAAGTT 58.335 41.667 14.53 0.00 46.07 2.66
2280 2712 4.442192 GCTGCTACTTCAGTAGGCATAAGT 60.442 45.833 14.53 0.00 46.07 2.24
2281 2713 4.054671 GCTGCTACTTCAGTAGGCATAAG 58.945 47.826 14.53 4.75 46.07 1.73
2282 2714 3.450817 TGCTGCTACTTCAGTAGGCATAA 59.549 43.478 14.53 3.80 46.07 1.90
2283 2715 3.031013 TGCTGCTACTTCAGTAGGCATA 58.969 45.455 14.53 4.65 46.07 3.14
2284 2716 1.833630 TGCTGCTACTTCAGTAGGCAT 59.166 47.619 14.53 0.00 46.07 4.40
2285 2717 1.266178 TGCTGCTACTTCAGTAGGCA 58.734 50.000 14.53 12.98 46.07 4.75
2286 2718 2.003301 GTTGCTGCTACTTCAGTAGGC 58.997 52.381 14.53 10.91 46.07 3.93
2287 2719 3.319137 TGTTGCTGCTACTTCAGTAGG 57.681 47.619 14.81 1.92 46.07 3.18
2289 2721 3.599343 CCATGTTGCTGCTACTTCAGTA 58.401 45.455 14.81 0.00 36.49 2.74
2290 2722 2.430465 CCATGTTGCTGCTACTTCAGT 58.570 47.619 14.81 0.00 36.49 3.41
2291 2723 1.741706 CCCATGTTGCTGCTACTTCAG 59.258 52.381 14.81 3.50 37.15 3.02
2292 2724 1.825090 CCCATGTTGCTGCTACTTCA 58.175 50.000 14.81 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.