Multiple sequence alignment - TraesCS1A01G247400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G247400 | chr1A | 100.000 | 3653 | 0 | 0 | 1 | 3653 | 438702149 | 438698497 | 0.000000e+00 | 6746 |
1 | TraesCS1A01G247400 | chr1A | 95.745 | 188 | 8 | 0 | 599 | 786 | 495443956 | 495443769 | 1.650000e-78 | 303 |
2 | TraesCS1A01G247400 | chr1A | 89.320 | 103 | 9 | 1 | 147 | 249 | 77163584 | 77163684 | 1.060000e-25 | 128 |
3 | TraesCS1A01G247400 | chr1D | 95.589 | 2879 | 88 | 7 | 807 | 3653 | 339115068 | 339112197 | 0.000000e+00 | 4577 |
4 | TraesCS1A01G247400 | chr1D | 84.615 | 130 | 13 | 4 | 147 | 271 | 420554641 | 420554514 | 4.950000e-24 | 122 |
5 | TraesCS1A01G247400 | chr1B | 95.875 | 1988 | 74 | 3 | 790 | 2769 | 453883102 | 453881115 | 0.000000e+00 | 3210 |
6 | TraesCS1A01G247400 | chr1B | 92.697 | 1068 | 39 | 17 | 2613 | 3653 | 453880866 | 453879811 | 0.000000e+00 | 1504 |
7 | TraesCS1A01G247400 | chr1B | 90.960 | 354 | 23 | 9 | 247 | 594 | 453884105 | 453883755 | 5.520000e-128 | 468 |
8 | TraesCS1A01G247400 | chr1B | 92.553 | 188 | 13 | 1 | 599 | 786 | 535143004 | 535142818 | 6.010000e-68 | 268 |
9 | TraesCS1A01G247400 | chr2A | 95.855 | 193 | 7 | 1 | 594 | 786 | 43918566 | 43918757 | 9.850000e-81 | 311 |
10 | TraesCS1A01G247400 | chr2A | 92.708 | 192 | 14 | 0 | 595 | 786 | 753462991 | 753462800 | 9.990000e-71 | 278 |
11 | TraesCS1A01G247400 | chr2A | 89.320 | 103 | 9 | 1 | 150 | 252 | 68155920 | 68155820 | 1.060000e-25 | 128 |
12 | TraesCS1A01G247400 | chr2A | 88.785 | 107 | 9 | 2 | 145 | 251 | 660286771 | 660286874 | 1.060000e-25 | 128 |
13 | TraesCS1A01G247400 | chr7A | 96.277 | 188 | 7 | 0 | 599 | 786 | 292853457 | 292853270 | 3.540000e-80 | 309 |
14 | TraesCS1A01G247400 | chr3D | 96.277 | 188 | 7 | 0 | 599 | 786 | 75913400 | 75913587 | 3.540000e-80 | 309 |
15 | TraesCS1A01G247400 | chr3A | 95.767 | 189 | 6 | 2 | 599 | 785 | 99387291 | 99387103 | 1.650000e-78 | 303 |
16 | TraesCS1A01G247400 | chr3A | 86.842 | 114 | 10 | 4 | 136 | 248 | 314623886 | 314623995 | 4.950000e-24 | 122 |
17 | TraesCS1A01G247400 | chr2D | 94.271 | 192 | 11 | 0 | 595 | 786 | 94348280 | 94348089 | 9.920000e-76 | 294 |
18 | TraesCS1A01G247400 | chr2D | 75.378 | 463 | 88 | 22 | 3203 | 3650 | 318329100 | 318329551 | 2.220000e-47 | 200 |
19 | TraesCS1A01G247400 | chr7B | 91.579 | 190 | 15 | 1 | 599 | 787 | 456001823 | 456002012 | 1.010000e-65 | 261 |
20 | TraesCS1A01G247400 | chr4D | 90.654 | 107 | 7 | 2 | 145 | 251 | 177433305 | 177433202 | 4.920000e-29 | 139 |
21 | TraesCS1A01G247400 | chr7D | 91.176 | 102 | 7 | 1 | 150 | 251 | 168579919 | 168580018 | 1.770000e-28 | 137 |
22 | TraesCS1A01G247400 | chr4B | 90.909 | 99 | 7 | 1 | 150 | 248 | 646855896 | 646855992 | 8.230000e-27 | 132 |
23 | TraesCS1A01G247400 | chr5D | 88.785 | 107 | 10 | 1 | 146 | 252 | 416422266 | 416422370 | 2.960000e-26 | 130 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G247400 | chr1A | 438698497 | 438702149 | 3652 | True | 6746.000000 | 6746 | 100.000000 | 1 | 3653 | 1 | chr1A.!!$R1 | 3652 |
1 | TraesCS1A01G247400 | chr1D | 339112197 | 339115068 | 2871 | True | 4577.000000 | 4577 | 95.589000 | 807 | 3653 | 1 | chr1D.!!$R1 | 2846 |
2 | TraesCS1A01G247400 | chr1B | 453879811 | 453884105 | 4294 | True | 1727.333333 | 3210 | 93.177333 | 247 | 3653 | 3 | chr1B.!!$R2 | 3406 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
685 | 1037 | 0.035036 | TCGACGTGCCCAACCAAATA | 59.965 | 50.0 | 0.0 | 0.0 | 0.0 | 1.40 | F |
1599 | 2071 | 0.622665 | ACTTGATGCTGGAGGAAGGG | 59.377 | 55.0 | 0.0 | 0.0 | 0.0 | 3.95 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1689 | 2161 | 0.742505 | CACATCCGGCAGCAATCATT | 59.257 | 50.0 | 0.0 | 0.0 | 0.0 | 2.57 | R |
3295 | 4197 | 0.670546 | AGAATCCCACTGTTGCGACG | 60.671 | 55.0 | 0.0 | 0.0 | 0.0 | 5.12 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 6.656632 | AGTTACAACATGAAGTCAGAGAGA | 57.343 | 37.500 | 0.00 | 0.00 | 0.00 | 3.10 |
24 | 25 | 7.055667 | AGTTACAACATGAAGTCAGAGAGAA | 57.944 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
25 | 26 | 7.500992 | AGTTACAACATGAAGTCAGAGAGAAA | 58.499 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
26 | 27 | 7.439655 | AGTTACAACATGAAGTCAGAGAGAAAC | 59.560 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
27 | 28 | 5.674525 | ACAACATGAAGTCAGAGAGAAACA | 58.325 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
28 | 29 | 6.294473 | ACAACATGAAGTCAGAGAGAAACAT | 58.706 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
29 | 30 | 6.204301 | ACAACATGAAGTCAGAGAGAAACATG | 59.796 | 38.462 | 0.00 | 0.00 | 38.28 | 3.21 |
30 | 31 | 5.862845 | ACATGAAGTCAGAGAGAAACATGT | 58.137 | 37.500 | 0.00 | 0.00 | 39.41 | 3.21 |
31 | 32 | 5.931146 | ACATGAAGTCAGAGAGAAACATGTC | 59.069 | 40.000 | 0.00 | 0.00 | 39.73 | 3.06 |
32 | 33 | 5.535753 | TGAAGTCAGAGAGAAACATGTCA | 57.464 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
33 | 34 | 5.536260 | TGAAGTCAGAGAGAAACATGTCAG | 58.464 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
34 | 35 | 3.924144 | AGTCAGAGAGAAACATGTCAGC | 58.076 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
35 | 36 | 3.577848 | AGTCAGAGAGAAACATGTCAGCT | 59.422 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
36 | 37 | 4.040217 | AGTCAGAGAGAAACATGTCAGCTT | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 3.74 |
37 | 38 | 4.754114 | GTCAGAGAGAAACATGTCAGCTTT | 59.246 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
38 | 39 | 5.238214 | GTCAGAGAGAAACATGTCAGCTTTT | 59.762 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
39 | 40 | 6.425114 | GTCAGAGAGAAACATGTCAGCTTTTA | 59.575 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
40 | 41 | 6.648310 | TCAGAGAGAAACATGTCAGCTTTTAG | 59.352 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
41 | 42 | 6.648310 | CAGAGAGAAACATGTCAGCTTTTAGA | 59.352 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
42 | 43 | 6.873076 | AGAGAGAAACATGTCAGCTTTTAGAG | 59.127 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
54 | 55 | 3.207474 | CTTTTAGAGCACATGCCACAC | 57.793 | 47.619 | 0.00 | 0.00 | 43.38 | 3.82 |
55 | 56 | 1.155889 | TTTAGAGCACATGCCACACG | 58.844 | 50.000 | 0.00 | 0.00 | 43.38 | 4.49 |
56 | 57 | 0.673333 | TTAGAGCACATGCCACACGG | 60.673 | 55.000 | 0.00 | 0.00 | 43.38 | 4.94 |
57 | 58 | 1.540435 | TAGAGCACATGCCACACGGA | 61.540 | 55.000 | 0.00 | 0.00 | 43.38 | 4.69 |
58 | 59 | 1.965930 | GAGCACATGCCACACGGAA | 60.966 | 57.895 | 0.00 | 0.00 | 43.38 | 4.30 |
59 | 60 | 1.303561 | AGCACATGCCACACGGAAT | 60.304 | 52.632 | 0.00 | 0.00 | 43.38 | 3.01 |
60 | 61 | 0.895100 | AGCACATGCCACACGGAATT | 60.895 | 50.000 | 0.00 | 0.00 | 43.38 | 2.17 |
61 | 62 | 0.038343 | GCACATGCCACACGGAATTT | 60.038 | 50.000 | 0.00 | 0.00 | 34.31 | 1.82 |
62 | 63 | 1.700523 | CACATGCCACACGGAATTTG | 58.299 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
63 | 64 | 0.602562 | ACATGCCACACGGAATTTGG | 59.397 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
64 | 65 | 0.108709 | CATGCCACACGGAATTTGGG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
65 | 66 | 0.251564 | ATGCCACACGGAATTTGGGA | 60.252 | 50.000 | 0.00 | 0.00 | 34.94 | 4.37 |
66 | 67 | 0.251564 | TGCCACACGGAATTTGGGAT | 60.252 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
67 | 68 | 1.004862 | TGCCACACGGAATTTGGGATA | 59.995 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
68 | 69 | 2.096248 | GCCACACGGAATTTGGGATAA | 58.904 | 47.619 | 0.00 | 0.00 | 0.00 | 1.75 |
69 | 70 | 2.494073 | GCCACACGGAATTTGGGATAAA | 59.506 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
70 | 71 | 3.056465 | GCCACACGGAATTTGGGATAAAA | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
71 | 72 | 4.561734 | GCCACACGGAATTTGGGATAAAAA | 60.562 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
93 | 94 | 8.504812 | AAAAATACAAGCTTGAAACCAACATT | 57.495 | 26.923 | 32.50 | 13.68 | 0.00 | 2.71 |
94 | 95 | 8.504812 | AAAATACAAGCTTGAAACCAACATTT | 57.495 | 26.923 | 32.50 | 17.68 | 0.00 | 2.32 |
95 | 96 | 7.713764 | AATACAAGCTTGAAACCAACATTTC | 57.286 | 32.000 | 32.50 | 0.00 | 38.77 | 2.17 |
96 | 97 | 5.083533 | ACAAGCTTGAAACCAACATTTCA | 57.916 | 34.783 | 32.50 | 0.00 | 44.80 | 2.69 |
97 | 98 | 4.869861 | ACAAGCTTGAAACCAACATTTCAC | 59.130 | 37.500 | 32.50 | 0.00 | 45.84 | 3.18 |
98 | 99 | 4.058721 | AGCTTGAAACCAACATTTCACC | 57.941 | 40.909 | 0.55 | 0.00 | 45.84 | 4.02 |
99 | 100 | 3.130633 | GCTTGAAACCAACATTTCACCC | 58.869 | 45.455 | 0.55 | 0.00 | 45.84 | 4.61 |
100 | 101 | 3.727726 | CTTGAAACCAACATTTCACCCC | 58.272 | 45.455 | 0.55 | 0.00 | 45.84 | 4.95 |
101 | 102 | 2.752030 | TGAAACCAACATTTCACCCCA | 58.248 | 42.857 | 0.00 | 0.00 | 42.32 | 4.96 |
102 | 103 | 3.107601 | TGAAACCAACATTTCACCCCAA | 58.892 | 40.909 | 0.00 | 0.00 | 42.32 | 4.12 |
103 | 104 | 3.519510 | TGAAACCAACATTTCACCCCAAA | 59.480 | 39.130 | 0.00 | 0.00 | 42.32 | 3.28 |
104 | 105 | 4.164988 | TGAAACCAACATTTCACCCCAAAT | 59.835 | 37.500 | 0.00 | 0.00 | 42.32 | 2.32 |
105 | 106 | 4.787135 | AACCAACATTTCACCCCAAATT | 57.213 | 36.364 | 0.00 | 0.00 | 0.00 | 1.82 |
106 | 107 | 4.084011 | ACCAACATTTCACCCCAAATTG | 57.916 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
107 | 108 | 3.713764 | ACCAACATTTCACCCCAAATTGA | 59.286 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
108 | 109 | 4.064388 | CCAACATTTCACCCCAAATTGAC | 58.936 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
109 | 110 | 4.202346 | CCAACATTTCACCCCAAATTGACT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
110 | 111 | 5.011533 | CCAACATTTCACCCCAAATTGACTA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
111 | 112 | 5.722021 | ACATTTCACCCCAAATTGACTAC | 57.278 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
112 | 113 | 5.144100 | ACATTTCACCCCAAATTGACTACA | 58.856 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
113 | 114 | 5.600484 | ACATTTCACCCCAAATTGACTACAA | 59.400 | 36.000 | 0.00 | 0.00 | 40.42 | 2.41 |
114 | 115 | 5.523438 | TTTCACCCCAAATTGACTACAAC | 57.477 | 39.130 | 0.00 | 0.00 | 38.90 | 3.32 |
115 | 116 | 3.492337 | TCACCCCAAATTGACTACAACC | 58.508 | 45.455 | 0.00 | 0.00 | 38.90 | 3.77 |
116 | 117 | 3.117474 | TCACCCCAAATTGACTACAACCA | 60.117 | 43.478 | 0.00 | 0.00 | 38.90 | 3.67 |
117 | 118 | 3.005367 | CACCCCAAATTGACTACAACCAC | 59.995 | 47.826 | 0.00 | 0.00 | 38.90 | 4.16 |
118 | 119 | 3.226777 | CCCCAAATTGACTACAACCACA | 58.773 | 45.455 | 0.00 | 0.00 | 38.90 | 4.17 |
119 | 120 | 3.639094 | CCCCAAATTGACTACAACCACAA | 59.361 | 43.478 | 0.00 | 0.00 | 38.90 | 3.33 |
120 | 121 | 4.100189 | CCCCAAATTGACTACAACCACAAA | 59.900 | 41.667 | 0.00 | 0.00 | 38.90 | 2.83 |
121 | 122 | 5.395768 | CCCCAAATTGACTACAACCACAAAA | 60.396 | 40.000 | 0.00 | 0.00 | 38.90 | 2.44 |
122 | 123 | 5.752955 | CCCAAATTGACTACAACCACAAAAG | 59.247 | 40.000 | 0.00 | 0.00 | 38.90 | 2.27 |
123 | 124 | 5.752955 | CCAAATTGACTACAACCACAAAAGG | 59.247 | 40.000 | 0.00 | 0.00 | 38.90 | 3.11 |
124 | 125 | 4.584327 | ATTGACTACAACCACAAAAGGC | 57.416 | 40.909 | 0.00 | 0.00 | 38.90 | 4.35 |
125 | 126 | 3.290948 | TGACTACAACCACAAAAGGCT | 57.709 | 42.857 | 0.00 | 0.00 | 0.00 | 4.58 |
126 | 127 | 4.425180 | TGACTACAACCACAAAAGGCTA | 57.575 | 40.909 | 0.00 | 0.00 | 0.00 | 3.93 |
127 | 128 | 4.783055 | TGACTACAACCACAAAAGGCTAA | 58.217 | 39.130 | 0.00 | 0.00 | 0.00 | 3.09 |
128 | 129 | 5.381757 | TGACTACAACCACAAAAGGCTAAT | 58.618 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
129 | 130 | 5.472137 | TGACTACAACCACAAAAGGCTAATC | 59.528 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
130 | 131 | 5.381757 | ACTACAACCACAAAAGGCTAATCA | 58.618 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
131 | 132 | 4.584327 | ACAACCACAAAAGGCTAATCAC | 57.416 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
132 | 133 | 3.957497 | ACAACCACAAAAGGCTAATCACA | 59.043 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
133 | 134 | 4.037923 | ACAACCACAAAAGGCTAATCACAG | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
134 | 135 | 3.832527 | ACCACAAAAGGCTAATCACAGT | 58.167 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
135 | 136 | 3.569701 | ACCACAAAAGGCTAATCACAGTG | 59.430 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
136 | 137 | 3.569701 | CCACAAAAGGCTAATCACAGTGT | 59.430 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
137 | 138 | 4.037923 | CCACAAAAGGCTAATCACAGTGTT | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
138 | 139 | 4.977963 | CACAAAAGGCTAATCACAGTGTTG | 59.022 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
139 | 140 | 3.923017 | AAAGGCTAATCACAGTGTTGC | 57.077 | 42.857 | 0.00 | 1.37 | 0.00 | 4.17 |
140 | 141 | 2.566833 | AGGCTAATCACAGTGTTGCA | 57.433 | 45.000 | 0.00 | 0.00 | 0.00 | 4.08 |
141 | 142 | 2.154462 | AGGCTAATCACAGTGTTGCAC | 58.846 | 47.619 | 0.00 | 0.00 | 34.10 | 4.57 |
142 | 143 | 1.879380 | GGCTAATCACAGTGTTGCACA | 59.121 | 47.619 | 0.00 | 0.00 | 36.74 | 4.57 |
155 | 156 | 3.670625 | TGTTGCACACATTACTACTCCC | 58.329 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
156 | 157 | 3.071747 | TGTTGCACACATTACTACTCCCA | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
157 | 158 | 3.328382 | TGCACACATTACTACTCCCAC | 57.672 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
158 | 159 | 2.027561 | TGCACACATTACTACTCCCACC | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
159 | 160 | 2.888594 | CACACATTACTACTCCCACCG | 58.111 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
160 | 161 | 2.232941 | CACACATTACTACTCCCACCGT | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
161 | 162 | 2.494870 | ACACATTACTACTCCCACCGTC | 59.505 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
162 | 163 | 2.105766 | ACATTACTACTCCCACCGTCC | 58.894 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
163 | 164 | 1.411612 | CATTACTACTCCCACCGTCCC | 59.588 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
164 | 165 | 0.409092 | TTACTACTCCCACCGTCCCA | 59.591 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
165 | 166 | 0.409092 | TACTACTCCCACCGTCCCAA | 59.591 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
166 | 167 | 0.472352 | ACTACTCCCACCGTCCCAAA | 60.472 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
167 | 168 | 0.688487 | CTACTCCCACCGTCCCAAAA | 59.312 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
168 | 169 | 1.280998 | CTACTCCCACCGTCCCAAAAT | 59.719 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
169 | 170 | 1.364269 | ACTCCCACCGTCCCAAAATA | 58.636 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
170 | 171 | 1.706305 | ACTCCCACCGTCCCAAAATAA | 59.294 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
171 | 172 | 2.290705 | ACTCCCACCGTCCCAAAATAAG | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
172 | 173 | 1.706305 | TCCCACCGTCCCAAAATAAGT | 59.294 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
173 | 174 | 1.816224 | CCCACCGTCCCAAAATAAGTG | 59.184 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
174 | 175 | 2.510613 | CCACCGTCCCAAAATAAGTGT | 58.489 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
175 | 176 | 2.486592 | CCACCGTCCCAAAATAAGTGTC | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
176 | 177 | 3.408634 | CACCGTCCCAAAATAAGTGTCT | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
177 | 178 | 3.435671 | CACCGTCCCAAAATAAGTGTCTC | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
178 | 179 | 3.071892 | ACCGTCCCAAAATAAGTGTCTCA | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
179 | 180 | 4.069304 | CCGTCCCAAAATAAGTGTCTCAA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
180 | 181 | 4.083484 | CCGTCCCAAAATAAGTGTCTCAAC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
181 | 182 | 4.755123 | CGTCCCAAAATAAGTGTCTCAACT | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
182 | 183 | 5.238650 | CGTCCCAAAATAAGTGTCTCAACTT | 59.761 | 40.000 | 0.00 | 0.00 | 42.89 | 2.66 |
183 | 184 | 6.238648 | CGTCCCAAAATAAGTGTCTCAACTTT | 60.239 | 38.462 | 0.00 | 0.00 | 40.77 | 2.66 |
184 | 185 | 6.918022 | GTCCCAAAATAAGTGTCTCAACTTTG | 59.082 | 38.462 | 0.00 | 0.00 | 40.77 | 2.77 |
185 | 186 | 6.605594 | TCCCAAAATAAGTGTCTCAACTTTGT | 59.394 | 34.615 | 0.00 | 0.00 | 40.77 | 2.83 |
186 | 187 | 7.776030 | TCCCAAAATAAGTGTCTCAACTTTGTA | 59.224 | 33.333 | 0.00 | 0.00 | 40.77 | 2.41 |
187 | 188 | 7.860872 | CCCAAAATAAGTGTCTCAACTTTGTAC | 59.139 | 37.037 | 0.00 | 0.00 | 40.77 | 2.90 |
188 | 189 | 8.621286 | CCAAAATAAGTGTCTCAACTTTGTACT | 58.379 | 33.333 | 0.00 | 0.00 | 40.77 | 2.73 |
239 | 240 | 1.834188 | AGGCACTTATTTTGGGACGG | 58.166 | 50.000 | 0.00 | 0.00 | 27.25 | 4.79 |
240 | 241 | 0.815095 | GGCACTTATTTTGGGACGGG | 59.185 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
241 | 242 | 0.815095 | GCACTTATTTTGGGACGGGG | 59.185 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
242 | 243 | 1.470051 | CACTTATTTTGGGACGGGGG | 58.530 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
266 | 267 | 6.127338 | GGGAGTATATCGATGATGAATGGACA | 60.127 | 42.308 | 8.54 | 0.00 | 0.00 | 4.02 |
284 | 285 | 4.744137 | TGGACAAACATTTTGCAAGAATCG | 59.256 | 37.500 | 0.00 | 1.98 | 0.00 | 3.34 |
286 | 287 | 5.117592 | GGACAAACATTTTGCAAGAATCGAG | 59.882 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
296 | 297 | 3.201290 | GCAAGAATCGAGTGGTCATGAT | 58.799 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
304 | 305 | 8.204160 | AGAATCGAGTGGTCATGATATTGTAAA | 58.796 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
324 | 325 | 7.013834 | TGTAAATGTACCCCCTCATTTCTTTT | 58.986 | 34.615 | 6.43 | 0.00 | 41.40 | 2.27 |
365 | 366 | 6.756221 | AGTTCCGTCTTAAGTCAAACATAGT | 58.244 | 36.000 | 1.63 | 0.00 | 0.00 | 2.12 |
369 | 370 | 9.545105 | TTCCGTCTTAAGTCAAACATAGTAAAA | 57.455 | 29.630 | 1.63 | 0.00 | 0.00 | 1.52 |
629 | 981 | 8.870075 | AGCAAGAAAACTAGGTCTTTATTGAT | 57.130 | 30.769 | 18.18 | 12.69 | 36.36 | 2.57 |
630 | 982 | 8.951243 | AGCAAGAAAACTAGGTCTTTATTGATC | 58.049 | 33.333 | 18.18 | 7.70 | 36.36 | 2.92 |
631 | 983 | 8.184848 | GCAAGAAAACTAGGTCTTTATTGATCC | 58.815 | 37.037 | 18.18 | 4.91 | 36.36 | 3.36 |
632 | 984 | 9.231297 | CAAGAAAACTAGGTCTTTATTGATCCA | 57.769 | 33.333 | 12.55 | 0.00 | 36.36 | 3.41 |
633 | 985 | 9.981460 | AAGAAAACTAGGTCTTTATTGATCCAT | 57.019 | 29.630 | 0.00 | 0.00 | 29.67 | 3.41 |
636 | 988 | 9.628500 | AAAACTAGGTCTTTATTGATCCATACC | 57.372 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
637 | 989 | 7.931015 | ACTAGGTCTTTATTGATCCATACCA | 57.069 | 36.000 | 0.00 | 0.00 | 0.00 | 3.25 |
638 | 990 | 8.331931 | ACTAGGTCTTTATTGATCCATACCAA | 57.668 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
639 | 991 | 8.949421 | ACTAGGTCTTTATTGATCCATACCAAT | 58.051 | 33.333 | 0.00 | 0.00 | 36.93 | 3.16 |
640 | 992 | 9.224267 | CTAGGTCTTTATTGATCCATACCAATG | 57.776 | 37.037 | 0.00 | 0.00 | 35.02 | 2.82 |
641 | 993 | 7.586349 | AGGTCTTTATTGATCCATACCAATGT | 58.414 | 34.615 | 0.00 | 0.00 | 35.02 | 2.71 |
642 | 994 | 8.061304 | AGGTCTTTATTGATCCATACCAATGTT | 58.939 | 33.333 | 0.00 | 0.00 | 35.02 | 2.71 |
643 | 995 | 8.695456 | GGTCTTTATTGATCCATACCAATGTTT | 58.305 | 33.333 | 0.00 | 0.00 | 35.02 | 2.83 |
648 | 1000 | 7.587037 | ATTGATCCATACCAATGTTTACAGG | 57.413 | 36.000 | 0.00 | 0.00 | 32.34 | 4.00 |
649 | 1001 | 6.320434 | TGATCCATACCAATGTTTACAGGA | 57.680 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
650 | 1002 | 6.726379 | TGATCCATACCAATGTTTACAGGAA | 58.274 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
651 | 1003 | 7.178573 | TGATCCATACCAATGTTTACAGGAAA | 58.821 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
652 | 1004 | 7.671819 | TGATCCATACCAATGTTTACAGGAAAA | 59.328 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
653 | 1005 | 7.461182 | TCCATACCAATGTTTACAGGAAAAG | 57.539 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
656 | 1008 | 3.886505 | ACCAATGTTTACAGGAAAAGCGA | 59.113 | 39.130 | 0.00 | 0.00 | 0.00 | 4.93 |
657 | 1009 | 4.522789 | ACCAATGTTTACAGGAAAAGCGAT | 59.477 | 37.500 | 0.00 | 0.00 | 0.00 | 4.58 |
658 | 1010 | 5.010617 | ACCAATGTTTACAGGAAAAGCGATT | 59.989 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
659 | 1011 | 5.345741 | CCAATGTTTACAGGAAAAGCGATTG | 59.654 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
660 | 1012 | 4.497473 | TGTTTACAGGAAAAGCGATTGG | 57.503 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
661 | 1013 | 3.254657 | TGTTTACAGGAAAAGCGATTGGG | 59.745 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
662 | 1014 | 2.871096 | TACAGGAAAAGCGATTGGGT | 57.129 | 45.000 | 0.00 | 0.00 | 0.00 | 4.51 |
663 | 1015 | 1.534729 | ACAGGAAAAGCGATTGGGTC | 58.465 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
664 | 1016 | 1.202879 | ACAGGAAAAGCGATTGGGTCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
665 | 1017 | 1.200020 | CAGGAAAAGCGATTGGGTCAC | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
666 | 1018 | 1.073923 | AGGAAAAGCGATTGGGTCACT | 59.926 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
667 | 1019 | 1.468914 | GGAAAAGCGATTGGGTCACTC | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
669 | 1021 | 0.320374 | AAAGCGATTGGGTCACTCGA | 59.680 | 50.000 | 10.93 | 0.00 | 38.49 | 4.04 |
670 | 1022 | 0.389948 | AAGCGATTGGGTCACTCGAC | 60.390 | 55.000 | 10.93 | 3.85 | 38.49 | 4.20 |
671 | 1023 | 2.158959 | GCGATTGGGTCACTCGACG | 61.159 | 63.158 | 10.93 | 0.00 | 43.61 | 5.12 |
673 | 1025 | 1.071019 | CGATTGGGTCACTCGACGTG | 61.071 | 60.000 | 0.00 | 8.24 | 43.61 | 4.49 |
674 | 1026 | 1.352156 | GATTGGGTCACTCGACGTGC | 61.352 | 60.000 | 0.00 | 5.85 | 43.61 | 5.34 |
675 | 1027 | 2.781595 | ATTGGGTCACTCGACGTGCC | 62.782 | 60.000 | 0.00 | 12.12 | 43.61 | 5.01 |
676 | 1028 | 4.736896 | GGGTCACTCGACGTGCCC | 62.737 | 72.222 | 20.23 | 20.23 | 45.83 | 5.36 |
677 | 1029 | 3.986006 | GGTCACTCGACGTGCCCA | 61.986 | 66.667 | 9.30 | 0.00 | 41.29 | 5.36 |
678 | 1030 | 2.028484 | GTCACTCGACGTGCCCAA | 59.972 | 61.111 | 0.00 | 0.00 | 43.46 | 4.12 |
679 | 1031 | 2.028484 | TCACTCGACGTGCCCAAC | 59.972 | 61.111 | 0.00 | 0.00 | 43.46 | 3.77 |
680 | 1032 | 3.041940 | CACTCGACGTGCCCAACC | 61.042 | 66.667 | 0.00 | 0.00 | 36.72 | 3.77 |
681 | 1033 | 3.542676 | ACTCGACGTGCCCAACCA | 61.543 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
683 | 1035 | 1.890041 | CTCGACGTGCCCAACCAAA | 60.890 | 57.895 | 0.00 | 0.00 | 0.00 | 3.28 |
685 | 1037 | 0.035036 | TCGACGTGCCCAACCAAATA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
687 | 1039 | 1.202132 | CGACGTGCCCAACCAAATATG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 1.78 |
720 | 1072 | 3.884693 | GGTAGAGAAGTACCTGACCTAGC | 59.115 | 52.174 | 0.00 | 0.00 | 39.65 | 3.42 |
721 | 1073 | 4.385532 | GGTAGAGAAGTACCTGACCTAGCT | 60.386 | 50.000 | 0.00 | 0.00 | 39.65 | 3.32 |
722 | 1074 | 5.163216 | GGTAGAGAAGTACCTGACCTAGCTA | 60.163 | 48.000 | 0.00 | 0.00 | 39.65 | 3.32 |
723 | 1075 | 5.453866 | AGAGAAGTACCTGACCTAGCTAA | 57.546 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
724 | 1076 | 5.195185 | AGAGAAGTACCTGACCTAGCTAAC | 58.805 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
725 | 1077 | 4.279982 | AGAAGTACCTGACCTAGCTAACC | 58.720 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
726 | 1078 | 4.017314 | AGAAGTACCTGACCTAGCTAACCT | 60.017 | 45.833 | 0.00 | 0.00 | 0.00 | 3.50 |
727 | 1079 | 5.193325 | AGAAGTACCTGACCTAGCTAACCTA | 59.807 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
728 | 1080 | 5.666474 | AGTACCTGACCTAGCTAACCTAT | 57.334 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
729 | 1081 | 5.386924 | AGTACCTGACCTAGCTAACCTATG | 58.613 | 45.833 | 0.00 | 0.00 | 0.00 | 2.23 |
732 | 1084 | 3.257127 | CCTGACCTAGCTAACCTATGAGC | 59.743 | 52.174 | 0.00 | 0.00 | 39.08 | 4.26 |
734 | 1086 | 4.547671 | TGACCTAGCTAACCTATGAGCTT | 58.452 | 43.478 | 1.16 | 0.00 | 46.99 | 3.74 |
736 | 1088 | 4.547671 | ACCTAGCTAACCTATGAGCTTCA | 58.452 | 43.478 | 1.16 | 0.00 | 46.99 | 3.02 |
737 | 1089 | 4.586841 | ACCTAGCTAACCTATGAGCTTCAG | 59.413 | 45.833 | 1.16 | 0.00 | 46.99 | 3.02 |
738 | 1090 | 4.586841 | CCTAGCTAACCTATGAGCTTCAGT | 59.413 | 45.833 | 1.16 | 0.00 | 46.99 | 3.41 |
739 | 1091 | 5.770663 | CCTAGCTAACCTATGAGCTTCAGTA | 59.229 | 44.000 | 1.16 | 0.00 | 46.99 | 2.74 |
740 | 1092 | 6.435904 | CCTAGCTAACCTATGAGCTTCAGTAT | 59.564 | 42.308 | 1.16 | 0.00 | 46.99 | 2.12 |
741 | 1093 | 6.739331 | AGCTAACCTATGAGCTTCAGTATT | 57.261 | 37.500 | 0.00 | 0.00 | 46.99 | 1.89 |
742 | 1094 | 7.130681 | AGCTAACCTATGAGCTTCAGTATTT | 57.869 | 36.000 | 0.00 | 0.00 | 46.99 | 1.40 |
743 | 1095 | 6.989169 | AGCTAACCTATGAGCTTCAGTATTTG | 59.011 | 38.462 | 0.00 | 0.00 | 46.99 | 2.32 |
744 | 1096 | 6.986817 | GCTAACCTATGAGCTTCAGTATTTGA | 59.013 | 38.462 | 0.00 | 0.00 | 35.73 | 2.69 |
745 | 1097 | 7.495934 | GCTAACCTATGAGCTTCAGTATTTGAA | 59.504 | 37.037 | 0.00 | 0.00 | 43.40 | 2.69 |
755 | 1107 | 4.537135 | TCAGTATTTGAAGCTCGAGGTT | 57.463 | 40.909 | 28.66 | 28.66 | 38.61 | 3.50 |
771 | 1123 | 6.360844 | TCGAGGTTCGAAAACAAAATTACA | 57.639 | 33.333 | 0.00 | 0.00 | 46.90 | 2.41 |
772 | 1124 | 6.783162 | TCGAGGTTCGAAAACAAAATTACAA | 58.217 | 32.000 | 0.00 | 0.00 | 46.90 | 2.41 |
773 | 1125 | 6.908284 | TCGAGGTTCGAAAACAAAATTACAAG | 59.092 | 34.615 | 0.00 | 0.00 | 46.90 | 3.16 |
774 | 1126 | 6.908284 | CGAGGTTCGAAAACAAAATTACAAGA | 59.092 | 34.615 | 0.00 | 0.00 | 43.74 | 3.02 |
775 | 1127 | 7.429920 | CGAGGTTCGAAAACAAAATTACAAGAA | 59.570 | 33.333 | 0.00 | 0.00 | 43.74 | 2.52 |
776 | 1128 | 8.628882 | AGGTTCGAAAACAAAATTACAAGAAG | 57.371 | 30.769 | 0.00 | 0.00 | 37.10 | 2.85 |
778 | 1130 | 9.505995 | GGTTCGAAAACAAAATTACAAGAAGTA | 57.494 | 29.630 | 0.00 | 0.00 | 37.10 | 2.24 |
810 | 1274 | 7.675619 | TCATATAAGAGTCAATGAGGCCTATCA | 59.324 | 37.037 | 4.42 | 0.00 | 0.00 | 2.15 |
869 | 1333 | 1.679680 | TCCGTTCTTCTGTCTCACGTT | 59.320 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
875 | 1344 | 4.913335 | TCTTCTGTCTCACGTTACACTT | 57.087 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
881 | 1350 | 1.001048 | TCTCACGTTACACTTCCCACG | 60.001 | 52.381 | 0.00 | 0.00 | 38.62 | 4.94 |
1076 | 1548 | 2.675423 | TCACCTCCGAGACCACCG | 60.675 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
1215 | 1687 | 4.166011 | GCCGCGTTGGATGCTGTC | 62.166 | 66.667 | 4.92 | 0.00 | 42.00 | 3.51 |
1314 | 1786 | 1.893808 | CGCCTGCTTCACCACAGTT | 60.894 | 57.895 | 0.00 | 0.00 | 31.76 | 3.16 |
1317 | 1789 | 0.820891 | CCTGCTTCACCACAGTTGCT | 60.821 | 55.000 | 0.00 | 0.00 | 31.76 | 3.91 |
1498 | 1970 | 1.009829 | GATGACGGAGAATGGTGTGC | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1515 | 1987 | 1.074775 | GCCCCCAGATGTTGTCACA | 59.925 | 57.895 | 0.00 | 0.00 | 37.31 | 3.58 |
1599 | 2071 | 0.622665 | ACTTGATGCTGGAGGAAGGG | 59.377 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1604 | 2076 | 4.785453 | GCTGGAGGAAGGGTGCCG | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 5.69 |
1651 | 2123 | 2.279851 | TGCACGCGTACTGCACTT | 60.280 | 55.556 | 17.66 | 0.00 | 46.97 | 3.16 |
1689 | 2161 | 1.815408 | GCCAAGAAGCTGTTGGACTCA | 60.815 | 52.381 | 25.59 | 0.00 | 46.53 | 3.41 |
1701 | 2173 | 1.466856 | TGGACTCAATGATTGCTGCC | 58.533 | 50.000 | 0.00 | 2.09 | 0.00 | 4.85 |
1757 | 2229 | 5.536161 | TCTTGATTAAAGCTCTTTGCAAGGT | 59.464 | 36.000 | 20.74 | 0.00 | 45.94 | 3.50 |
1758 | 2230 | 5.376854 | TGATTAAAGCTCTTTGCAAGGTC | 57.623 | 39.130 | 8.56 | 2.32 | 45.94 | 3.85 |
2382 | 2854 | 8.584157 | GTGATTGATTGTCTATGTAGAGAGGAT | 58.416 | 37.037 | 0.00 | 0.00 | 32.01 | 3.24 |
2616 | 3088 | 6.017440 | GTCAAGGCACAGAAATGTACAAAGTA | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2675 | 3148 | 6.920758 | TGATTTTTCTCCAACAATTAACACGG | 59.079 | 34.615 | 0.00 | 0.00 | 0.00 | 4.94 |
2694 | 3167 | 4.275936 | CACGGAAGAAATTCCAGTTCTGTT | 59.724 | 41.667 | 7.72 | 0.00 | 41.16 | 3.16 |
2766 | 3432 | 4.536765 | AGTGTCATCCTTTTTCCAGTTGT | 58.463 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
2781 | 3447 | 6.701145 | TCCAGTTGTTGTTTATGTTGCTTA | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
2799 | 3466 | 8.239314 | TGTTGCTTATTTTCTTTATGAGCAGAG | 58.761 | 33.333 | 0.00 | 0.00 | 42.93 | 3.35 |
2810 | 3477 | 8.023021 | TCTTTATGAGCAGAGCCTCTAATTTA | 57.977 | 34.615 | 0.00 | 0.00 | 33.02 | 1.40 |
2811 | 3478 | 7.928706 | TCTTTATGAGCAGAGCCTCTAATTTAC | 59.071 | 37.037 | 0.00 | 0.00 | 33.02 | 2.01 |
2816 | 3483 | 6.942576 | TGAGCAGAGCCTCTAATTTACTTTTT | 59.057 | 34.615 | 0.00 | 0.00 | 33.02 | 1.94 |
2983 | 3859 | 8.703336 | CGCATGCGCTAGTATCATAATATTAAT | 58.297 | 33.333 | 29.09 | 0.00 | 35.30 | 1.40 |
3020 | 3896 | 5.186992 | TGGAAGGACTCGATTCAACTAATGA | 59.813 | 40.000 | 5.06 | 0.00 | 35.85 | 2.57 |
3070 | 3946 | 3.304928 | GGGGCTCAAATCATAATCTTGCG | 60.305 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
3071 | 3947 | 3.303406 | GGCTCAAATCATAATCTTGCGC | 58.697 | 45.455 | 0.00 | 0.00 | 31.59 | 6.09 |
3072 | 3948 | 3.243168 | GGCTCAAATCATAATCTTGCGCA | 60.243 | 43.478 | 5.66 | 5.66 | 33.51 | 6.09 |
3160 | 4062 | 2.861462 | TTCCTTTTTGCTCCAACGTG | 57.139 | 45.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3173 | 4075 | 2.365941 | TCCAACGTGTACAAGATCACCA | 59.634 | 45.455 | 16.00 | 0.00 | 0.00 | 4.17 |
3266 | 4168 | 4.980434 | CACTGGAATTGAACTTGCTTTCTG | 59.020 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3412 | 4314 | 8.001881 | TCAGGTATTCTCTCAAACTCATAGTC | 57.998 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3482 | 4384 | 5.432885 | AACCAAACAGTAAGTGTATGCAC | 57.567 | 39.130 | 5.71 | 5.71 | 45.57 | 4.57 |
3489 | 4391 | 1.743394 | GTAAGTGTATGCACCAAGGCC | 59.257 | 52.381 | 10.59 | 0.00 | 46.35 | 5.19 |
3548 | 4450 | 9.232473 | AGATCTTAATGAAGGGTAAGTTTCAAC | 57.768 | 33.333 | 0.00 | 0.00 | 36.93 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 6.656632 | TCTCTCTGACTTCATGTTGTAACT | 57.343 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1 | 2 | 7.224753 | TGTTTCTCTCTGACTTCATGTTGTAAC | 59.775 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
2 | 3 | 7.272244 | TGTTTCTCTCTGACTTCATGTTGTAA | 58.728 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
3 | 4 | 6.816136 | TGTTTCTCTCTGACTTCATGTTGTA | 58.184 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4 | 5 | 5.674525 | TGTTTCTCTCTGACTTCATGTTGT | 58.325 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
5 | 6 | 6.204301 | ACATGTTTCTCTCTGACTTCATGTTG | 59.796 | 38.462 | 0.00 | 0.00 | 37.28 | 3.33 |
6 | 7 | 6.294473 | ACATGTTTCTCTCTGACTTCATGTT | 58.706 | 36.000 | 0.00 | 0.00 | 37.28 | 2.71 |
7 | 8 | 5.862845 | ACATGTTTCTCTCTGACTTCATGT | 58.137 | 37.500 | 0.00 | 0.00 | 36.56 | 3.21 |
8 | 9 | 5.930569 | TGACATGTTTCTCTCTGACTTCATG | 59.069 | 40.000 | 0.00 | 0.00 | 35.46 | 3.07 |
9 | 10 | 6.106648 | TGACATGTTTCTCTCTGACTTCAT | 57.893 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
10 | 11 | 5.535753 | TGACATGTTTCTCTCTGACTTCA | 57.464 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
11 | 12 | 4.388469 | GCTGACATGTTTCTCTCTGACTTC | 59.612 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
12 | 13 | 4.040217 | AGCTGACATGTTTCTCTCTGACTT | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
13 | 14 | 3.577848 | AGCTGACATGTTTCTCTCTGACT | 59.422 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
14 | 15 | 3.924144 | AGCTGACATGTTTCTCTCTGAC | 58.076 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
15 | 16 | 4.613925 | AAGCTGACATGTTTCTCTCTGA | 57.386 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
16 | 17 | 5.686159 | AAAAGCTGACATGTTTCTCTCTG | 57.314 | 39.130 | 0.00 | 0.00 | 0.00 | 3.35 |
17 | 18 | 6.763355 | TCTAAAAGCTGACATGTTTCTCTCT | 58.237 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
18 | 19 | 7.059448 | CTCTAAAAGCTGACATGTTTCTCTC | 57.941 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
34 | 35 | 2.413239 | CGTGTGGCATGTGCTCTAAAAG | 60.413 | 50.000 | 4.84 | 0.00 | 41.70 | 2.27 |
35 | 36 | 1.535028 | CGTGTGGCATGTGCTCTAAAA | 59.465 | 47.619 | 4.84 | 0.00 | 41.70 | 1.52 |
36 | 37 | 1.155889 | CGTGTGGCATGTGCTCTAAA | 58.844 | 50.000 | 4.84 | 0.00 | 41.70 | 1.85 |
37 | 38 | 0.673333 | CCGTGTGGCATGTGCTCTAA | 60.673 | 55.000 | 4.84 | 0.00 | 41.70 | 2.10 |
38 | 39 | 1.079197 | CCGTGTGGCATGTGCTCTA | 60.079 | 57.895 | 4.84 | 0.00 | 41.70 | 2.43 |
39 | 40 | 2.359107 | CCGTGTGGCATGTGCTCT | 60.359 | 61.111 | 4.84 | 0.00 | 41.70 | 4.09 |
40 | 41 | 1.308069 | ATTCCGTGTGGCATGTGCTC | 61.308 | 55.000 | 4.84 | 0.06 | 41.70 | 4.26 |
41 | 42 | 0.895100 | AATTCCGTGTGGCATGTGCT | 60.895 | 50.000 | 4.84 | 0.00 | 41.70 | 4.40 |
42 | 43 | 0.038343 | AAATTCCGTGTGGCATGTGC | 60.038 | 50.000 | 0.00 | 0.00 | 41.14 | 4.57 |
43 | 44 | 1.669502 | CCAAATTCCGTGTGGCATGTG | 60.670 | 52.381 | 0.00 | 0.00 | 34.14 | 3.21 |
44 | 45 | 0.602562 | CCAAATTCCGTGTGGCATGT | 59.397 | 50.000 | 0.00 | 0.00 | 34.14 | 3.21 |
45 | 46 | 0.108709 | CCCAAATTCCGTGTGGCATG | 60.109 | 55.000 | 0.00 | 0.00 | 34.14 | 4.06 |
46 | 47 | 0.251564 | TCCCAAATTCCGTGTGGCAT | 60.252 | 50.000 | 0.00 | 0.00 | 34.14 | 4.40 |
47 | 48 | 0.251564 | ATCCCAAATTCCGTGTGGCA | 60.252 | 50.000 | 0.00 | 0.00 | 34.14 | 4.92 |
48 | 49 | 1.757682 | TATCCCAAATTCCGTGTGGC | 58.242 | 50.000 | 0.00 | 0.00 | 34.14 | 5.01 |
49 | 50 | 4.792521 | TTTTATCCCAAATTCCGTGTGG | 57.207 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
68 | 69 | 8.504812 | AATGTTGGTTTCAAGCTTGTATTTTT | 57.495 | 26.923 | 25.19 | 7.01 | 32.92 | 1.94 |
69 | 70 | 8.504812 | AAATGTTGGTTTCAAGCTTGTATTTT | 57.495 | 26.923 | 25.19 | 10.59 | 32.92 | 1.82 |
70 | 71 | 7.768120 | TGAAATGTTGGTTTCAAGCTTGTATTT | 59.232 | 29.630 | 25.19 | 17.11 | 43.12 | 1.40 |
71 | 72 | 7.224557 | GTGAAATGTTGGTTTCAAGCTTGTATT | 59.775 | 33.333 | 25.19 | 5.27 | 46.31 | 1.89 |
72 | 73 | 6.701400 | GTGAAATGTTGGTTTCAAGCTTGTAT | 59.299 | 34.615 | 25.19 | 6.42 | 46.31 | 2.29 |
73 | 74 | 6.039616 | GTGAAATGTTGGTTTCAAGCTTGTA | 58.960 | 36.000 | 25.19 | 14.19 | 46.31 | 2.41 |
74 | 75 | 4.869861 | GTGAAATGTTGGTTTCAAGCTTGT | 59.130 | 37.500 | 25.19 | 1.79 | 46.31 | 3.16 |
75 | 76 | 4.270808 | GGTGAAATGTTGGTTTCAAGCTTG | 59.729 | 41.667 | 20.81 | 20.81 | 46.31 | 4.01 |
76 | 77 | 4.441792 | GGTGAAATGTTGGTTTCAAGCTT | 58.558 | 39.130 | 0.00 | 0.00 | 46.31 | 3.74 |
77 | 78 | 3.181466 | GGGTGAAATGTTGGTTTCAAGCT | 60.181 | 43.478 | 3.88 | 0.00 | 46.31 | 3.74 |
78 | 79 | 3.130633 | GGGTGAAATGTTGGTTTCAAGC | 58.869 | 45.455 | 3.88 | 0.08 | 46.31 | 4.01 |
79 | 80 | 3.133721 | TGGGGTGAAATGTTGGTTTCAAG | 59.866 | 43.478 | 3.88 | 0.00 | 46.31 | 3.02 |
80 | 81 | 3.107601 | TGGGGTGAAATGTTGGTTTCAA | 58.892 | 40.909 | 3.88 | 0.00 | 46.31 | 2.69 |
81 | 82 | 2.752030 | TGGGGTGAAATGTTGGTTTCA | 58.248 | 42.857 | 0.00 | 0.00 | 43.66 | 2.69 |
82 | 83 | 3.828875 | TTGGGGTGAAATGTTGGTTTC | 57.171 | 42.857 | 0.00 | 0.00 | 38.32 | 2.78 |
83 | 84 | 4.787135 | ATTTGGGGTGAAATGTTGGTTT | 57.213 | 36.364 | 0.00 | 0.00 | 0.00 | 3.27 |
84 | 85 | 4.164988 | TCAATTTGGGGTGAAATGTTGGTT | 59.835 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
85 | 86 | 3.713764 | TCAATTTGGGGTGAAATGTTGGT | 59.286 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
86 | 87 | 4.064388 | GTCAATTTGGGGTGAAATGTTGG | 58.936 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
87 | 88 | 4.959723 | AGTCAATTTGGGGTGAAATGTTG | 58.040 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
88 | 89 | 5.600484 | TGTAGTCAATTTGGGGTGAAATGTT | 59.400 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
89 | 90 | 5.144100 | TGTAGTCAATTTGGGGTGAAATGT | 58.856 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
90 | 91 | 5.720371 | TGTAGTCAATTTGGGGTGAAATG | 57.280 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
91 | 92 | 5.011635 | GGTTGTAGTCAATTTGGGGTGAAAT | 59.988 | 40.000 | 0.00 | 0.00 | 35.92 | 2.17 |
92 | 93 | 4.342665 | GGTTGTAGTCAATTTGGGGTGAAA | 59.657 | 41.667 | 0.00 | 0.00 | 35.92 | 2.69 |
93 | 94 | 3.892588 | GGTTGTAGTCAATTTGGGGTGAA | 59.107 | 43.478 | 0.00 | 0.00 | 35.92 | 3.18 |
94 | 95 | 3.117474 | TGGTTGTAGTCAATTTGGGGTGA | 60.117 | 43.478 | 0.00 | 0.00 | 35.92 | 4.02 |
95 | 96 | 3.005367 | GTGGTTGTAGTCAATTTGGGGTG | 59.995 | 47.826 | 0.00 | 0.00 | 35.92 | 4.61 |
96 | 97 | 3.227614 | GTGGTTGTAGTCAATTTGGGGT | 58.772 | 45.455 | 0.00 | 0.00 | 35.92 | 4.95 |
97 | 98 | 3.226777 | TGTGGTTGTAGTCAATTTGGGG | 58.773 | 45.455 | 0.00 | 0.00 | 35.92 | 4.96 |
98 | 99 | 4.927978 | TTGTGGTTGTAGTCAATTTGGG | 57.072 | 40.909 | 0.00 | 0.00 | 35.92 | 4.12 |
99 | 100 | 5.752955 | CCTTTTGTGGTTGTAGTCAATTTGG | 59.247 | 40.000 | 0.00 | 0.00 | 35.92 | 3.28 |
100 | 101 | 5.234116 | GCCTTTTGTGGTTGTAGTCAATTTG | 59.766 | 40.000 | 0.00 | 0.00 | 35.92 | 2.32 |
101 | 102 | 5.128663 | AGCCTTTTGTGGTTGTAGTCAATTT | 59.871 | 36.000 | 0.00 | 0.00 | 35.92 | 1.82 |
102 | 103 | 4.649218 | AGCCTTTTGTGGTTGTAGTCAATT | 59.351 | 37.500 | 0.00 | 0.00 | 35.92 | 2.32 |
103 | 104 | 4.215109 | AGCCTTTTGTGGTTGTAGTCAAT | 58.785 | 39.130 | 0.00 | 0.00 | 35.92 | 2.57 |
104 | 105 | 3.626930 | AGCCTTTTGTGGTTGTAGTCAA | 58.373 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
105 | 106 | 3.290948 | AGCCTTTTGTGGTTGTAGTCA | 57.709 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
106 | 107 | 5.472137 | TGATTAGCCTTTTGTGGTTGTAGTC | 59.528 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
107 | 108 | 5.240844 | GTGATTAGCCTTTTGTGGTTGTAGT | 59.759 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
108 | 109 | 5.240623 | TGTGATTAGCCTTTTGTGGTTGTAG | 59.759 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
109 | 110 | 5.133941 | TGTGATTAGCCTTTTGTGGTTGTA | 58.866 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
110 | 111 | 3.957497 | TGTGATTAGCCTTTTGTGGTTGT | 59.043 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
111 | 112 | 4.037923 | ACTGTGATTAGCCTTTTGTGGTTG | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
112 | 113 | 4.037923 | CACTGTGATTAGCCTTTTGTGGTT | 59.962 | 41.667 | 0.32 | 0.00 | 0.00 | 3.67 |
113 | 114 | 3.569701 | CACTGTGATTAGCCTTTTGTGGT | 59.430 | 43.478 | 0.32 | 0.00 | 0.00 | 4.16 |
114 | 115 | 3.569701 | ACACTGTGATTAGCCTTTTGTGG | 59.430 | 43.478 | 15.86 | 0.00 | 0.00 | 4.17 |
115 | 116 | 4.836125 | ACACTGTGATTAGCCTTTTGTG | 57.164 | 40.909 | 15.86 | 0.00 | 0.00 | 3.33 |
116 | 117 | 4.499696 | GCAACACTGTGATTAGCCTTTTGT | 60.500 | 41.667 | 15.86 | 0.00 | 0.00 | 2.83 |
117 | 118 | 3.983344 | GCAACACTGTGATTAGCCTTTTG | 59.017 | 43.478 | 15.86 | 6.24 | 0.00 | 2.44 |
118 | 119 | 3.636300 | TGCAACACTGTGATTAGCCTTTT | 59.364 | 39.130 | 15.86 | 0.00 | 0.00 | 2.27 |
119 | 120 | 3.004734 | GTGCAACACTGTGATTAGCCTTT | 59.995 | 43.478 | 15.86 | 0.00 | 36.32 | 3.11 |
120 | 121 | 2.554032 | GTGCAACACTGTGATTAGCCTT | 59.446 | 45.455 | 15.86 | 0.00 | 36.32 | 4.35 |
121 | 122 | 2.154462 | GTGCAACACTGTGATTAGCCT | 58.846 | 47.619 | 15.86 | 0.00 | 36.32 | 4.58 |
122 | 123 | 1.879380 | TGTGCAACACTGTGATTAGCC | 59.121 | 47.619 | 15.86 | 7.23 | 45.67 | 3.93 |
135 | 136 | 3.435671 | GTGGGAGTAGTAATGTGTGCAAC | 59.564 | 47.826 | 0.00 | 0.00 | 37.35 | 4.17 |
136 | 137 | 3.558321 | GGTGGGAGTAGTAATGTGTGCAA | 60.558 | 47.826 | 0.00 | 0.00 | 0.00 | 4.08 |
137 | 138 | 2.027561 | GGTGGGAGTAGTAATGTGTGCA | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
138 | 139 | 2.629051 | GGTGGGAGTAGTAATGTGTGC | 58.371 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
139 | 140 | 2.232941 | ACGGTGGGAGTAGTAATGTGTG | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
140 | 141 | 2.494870 | GACGGTGGGAGTAGTAATGTGT | 59.505 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
141 | 142 | 2.159142 | GGACGGTGGGAGTAGTAATGTG | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 3.21 |
142 | 143 | 2.105766 | GGACGGTGGGAGTAGTAATGT | 58.894 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
143 | 144 | 1.411612 | GGGACGGTGGGAGTAGTAATG | 59.588 | 57.143 | 0.00 | 0.00 | 0.00 | 1.90 |
144 | 145 | 1.007479 | TGGGACGGTGGGAGTAGTAAT | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
145 | 146 | 0.409092 | TGGGACGGTGGGAGTAGTAA | 59.591 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
146 | 147 | 0.409092 | TTGGGACGGTGGGAGTAGTA | 59.591 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
147 | 148 | 0.472352 | TTTGGGACGGTGGGAGTAGT | 60.472 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
148 | 149 | 0.688487 | TTTTGGGACGGTGGGAGTAG | 59.312 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
149 | 150 | 1.364269 | ATTTTGGGACGGTGGGAGTA | 58.636 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
150 | 151 | 1.364269 | TATTTTGGGACGGTGGGAGT | 58.636 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
151 | 152 | 2.290705 | ACTTATTTTGGGACGGTGGGAG | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
152 | 153 | 1.706305 | ACTTATTTTGGGACGGTGGGA | 59.294 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
153 | 154 | 1.816224 | CACTTATTTTGGGACGGTGGG | 59.184 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
154 | 155 | 2.486592 | GACACTTATTTTGGGACGGTGG | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
155 | 156 | 3.408634 | AGACACTTATTTTGGGACGGTG | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
156 | 157 | 3.071892 | TGAGACACTTATTTTGGGACGGT | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 4.83 |
157 | 158 | 3.670625 | TGAGACACTTATTTTGGGACGG | 58.329 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
158 | 159 | 4.755123 | AGTTGAGACACTTATTTTGGGACG | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
159 | 160 | 6.635030 | AAGTTGAGACACTTATTTTGGGAC | 57.365 | 37.500 | 0.00 | 0.00 | 35.10 | 4.46 |
160 | 161 | 6.605594 | ACAAAGTTGAGACACTTATTTTGGGA | 59.394 | 34.615 | 0.00 | 0.00 | 35.87 | 4.37 |
161 | 162 | 6.805713 | ACAAAGTTGAGACACTTATTTTGGG | 58.194 | 36.000 | 0.00 | 0.00 | 35.87 | 4.12 |
162 | 163 | 8.621286 | AGTACAAAGTTGAGACACTTATTTTGG | 58.379 | 33.333 | 0.00 | 0.00 | 35.87 | 3.28 |
208 | 209 | 9.185680 | CCAAAATAAGTGCCTTATAACCTTACT | 57.814 | 33.333 | 7.58 | 0.00 | 35.85 | 2.24 |
209 | 210 | 8.410912 | CCCAAAATAAGTGCCTTATAACCTTAC | 58.589 | 37.037 | 7.58 | 0.00 | 35.85 | 2.34 |
210 | 211 | 8.337739 | TCCCAAAATAAGTGCCTTATAACCTTA | 58.662 | 33.333 | 7.58 | 0.00 | 35.85 | 2.69 |
211 | 212 | 7.123697 | GTCCCAAAATAAGTGCCTTATAACCTT | 59.876 | 37.037 | 7.58 | 0.00 | 35.85 | 3.50 |
212 | 213 | 6.605995 | GTCCCAAAATAAGTGCCTTATAACCT | 59.394 | 38.462 | 7.58 | 0.00 | 35.85 | 3.50 |
213 | 214 | 6.459161 | CGTCCCAAAATAAGTGCCTTATAACC | 60.459 | 42.308 | 7.58 | 0.00 | 35.85 | 2.85 |
214 | 215 | 6.459161 | CCGTCCCAAAATAAGTGCCTTATAAC | 60.459 | 42.308 | 7.58 | 0.00 | 35.85 | 1.89 |
215 | 216 | 5.591067 | CCGTCCCAAAATAAGTGCCTTATAA | 59.409 | 40.000 | 7.58 | 0.00 | 35.85 | 0.98 |
216 | 217 | 5.127491 | CCGTCCCAAAATAAGTGCCTTATA | 58.873 | 41.667 | 7.58 | 0.00 | 35.85 | 0.98 |
217 | 218 | 3.951680 | CCGTCCCAAAATAAGTGCCTTAT | 59.048 | 43.478 | 2.63 | 2.63 | 38.17 | 1.73 |
218 | 219 | 3.349022 | CCGTCCCAAAATAAGTGCCTTA | 58.651 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
219 | 220 | 2.167662 | CCGTCCCAAAATAAGTGCCTT | 58.832 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
220 | 221 | 1.615919 | CCCGTCCCAAAATAAGTGCCT | 60.616 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
221 | 222 | 0.815095 | CCCGTCCCAAAATAAGTGCC | 59.185 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
222 | 223 | 0.815095 | CCCCGTCCCAAAATAAGTGC | 59.185 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
223 | 224 | 1.470051 | CCCCCGTCCCAAAATAAGTG | 58.530 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
224 | 225 | 3.991972 | CCCCCGTCCCAAAATAAGT | 57.008 | 52.632 | 0.00 | 0.00 | 0.00 | 2.24 |
239 | 240 | 5.453903 | CCATTCATCATCGATATACTCCCCC | 60.454 | 48.000 | 0.00 | 0.00 | 0.00 | 5.40 |
240 | 241 | 5.363868 | TCCATTCATCATCGATATACTCCCC | 59.636 | 44.000 | 0.00 | 0.00 | 0.00 | 4.81 |
241 | 242 | 6.127338 | TGTCCATTCATCATCGATATACTCCC | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
242 | 243 | 6.867550 | TGTCCATTCATCATCGATATACTCC | 58.132 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
243 | 244 | 8.651588 | GTTTGTCCATTCATCATCGATATACTC | 58.348 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
244 | 245 | 8.150296 | TGTTTGTCCATTCATCATCGATATACT | 58.850 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
245 | 246 | 8.310406 | TGTTTGTCCATTCATCATCGATATAC | 57.690 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
252 | 253 | 6.369340 | TGCAAAATGTTTGTCCATTCATCATC | 59.631 | 34.615 | 2.92 | 0.00 | 34.01 | 2.92 |
259 | 260 | 6.073657 | CGATTCTTGCAAAATGTTTGTCCATT | 60.074 | 34.615 | 0.00 | 0.00 | 36.62 | 3.16 |
266 | 267 | 4.984161 | CCACTCGATTCTTGCAAAATGTTT | 59.016 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
284 | 285 | 8.774586 | GGTACATTTACAATATCATGACCACTC | 58.225 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
286 | 287 | 7.040686 | GGGGTACATTTACAATATCATGACCAC | 60.041 | 40.741 | 0.00 | 0.00 | 0.00 | 4.16 |
296 | 297 | 7.878495 | AGAAATGAGGGGGTACATTTACAATA | 58.122 | 34.615 | 0.00 | 0.00 | 43.62 | 1.90 |
324 | 325 | 9.826574 | AGACGGAACTTATATATGCAAAGTAAA | 57.173 | 29.630 | 1.30 | 0.00 | 33.24 | 2.01 |
341 | 342 | 6.756221 | ACTATGTTTGACTTAAGACGGAACT | 58.244 | 36.000 | 10.09 | 5.67 | 0.00 | 3.01 |
604 | 956 | 8.870075 | ATCAATAAAGACCTAGTTTTCTTGCT | 57.130 | 30.769 | 0.57 | 0.00 | 32.26 | 3.91 |
606 | 958 | 9.231297 | TGGATCAATAAAGACCTAGTTTTCTTG | 57.769 | 33.333 | 0.00 | 2.91 | 32.26 | 3.02 |
610 | 962 | 9.628500 | GGTATGGATCAATAAAGACCTAGTTTT | 57.372 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
611 | 963 | 8.778059 | TGGTATGGATCAATAAAGACCTAGTTT | 58.222 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
612 | 964 | 8.331931 | TGGTATGGATCAATAAAGACCTAGTT | 57.668 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
613 | 965 | 7.931015 | TGGTATGGATCAATAAAGACCTAGT | 57.069 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
614 | 966 | 9.224267 | CATTGGTATGGATCAATAAAGACCTAG | 57.776 | 37.037 | 0.00 | 0.00 | 32.92 | 3.02 |
615 | 967 | 8.723365 | ACATTGGTATGGATCAATAAAGACCTA | 58.277 | 33.333 | 0.00 | 0.00 | 36.01 | 3.08 |
616 | 968 | 7.586349 | ACATTGGTATGGATCAATAAAGACCT | 58.414 | 34.615 | 0.00 | 0.00 | 36.01 | 3.85 |
617 | 969 | 7.823745 | ACATTGGTATGGATCAATAAAGACC | 57.176 | 36.000 | 0.00 | 0.00 | 36.01 | 3.85 |
623 | 975 | 8.498575 | TCCTGTAAACATTGGTATGGATCAATA | 58.501 | 33.333 | 0.00 | 0.00 | 36.01 | 1.90 |
624 | 976 | 7.353525 | TCCTGTAAACATTGGTATGGATCAAT | 58.646 | 34.615 | 0.00 | 0.00 | 36.01 | 2.57 |
625 | 977 | 6.726379 | TCCTGTAAACATTGGTATGGATCAA | 58.274 | 36.000 | 0.00 | 0.00 | 36.01 | 2.57 |
626 | 978 | 6.320434 | TCCTGTAAACATTGGTATGGATCA | 57.680 | 37.500 | 0.00 | 0.00 | 36.01 | 2.92 |
627 | 979 | 7.639113 | TTTCCTGTAAACATTGGTATGGATC | 57.361 | 36.000 | 0.00 | 0.00 | 36.01 | 3.36 |
629 | 981 | 6.071616 | GCTTTTCCTGTAAACATTGGTATGGA | 60.072 | 38.462 | 0.00 | 0.00 | 36.01 | 3.41 |
630 | 982 | 6.099341 | GCTTTTCCTGTAAACATTGGTATGG | 58.901 | 40.000 | 0.00 | 0.00 | 36.01 | 2.74 |
631 | 983 | 5.799936 | CGCTTTTCCTGTAAACATTGGTATG | 59.200 | 40.000 | 0.00 | 0.00 | 37.79 | 2.39 |
632 | 984 | 5.708230 | TCGCTTTTCCTGTAAACATTGGTAT | 59.292 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
633 | 985 | 5.064558 | TCGCTTTTCCTGTAAACATTGGTA | 58.935 | 37.500 | 0.00 | 0.00 | 0.00 | 3.25 |
634 | 986 | 3.886505 | TCGCTTTTCCTGTAAACATTGGT | 59.113 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
636 | 988 | 5.345741 | CCAATCGCTTTTCCTGTAAACATTG | 59.654 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
637 | 989 | 5.469479 | CCAATCGCTTTTCCTGTAAACATT | 58.531 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
638 | 990 | 4.082245 | CCCAATCGCTTTTCCTGTAAACAT | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
639 | 991 | 3.254657 | CCCAATCGCTTTTCCTGTAAACA | 59.745 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
640 | 992 | 3.254903 | ACCCAATCGCTTTTCCTGTAAAC | 59.745 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
641 | 993 | 3.492337 | ACCCAATCGCTTTTCCTGTAAA | 58.508 | 40.909 | 0.00 | 0.00 | 0.00 | 2.01 |
642 | 994 | 3.078837 | GACCCAATCGCTTTTCCTGTAA | 58.921 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
643 | 995 | 2.039216 | TGACCCAATCGCTTTTCCTGTA | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
644 | 996 | 1.202879 | TGACCCAATCGCTTTTCCTGT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
645 | 997 | 1.200020 | GTGACCCAATCGCTTTTCCTG | 59.800 | 52.381 | 0.00 | 0.00 | 34.76 | 3.86 |
646 | 998 | 1.073923 | AGTGACCCAATCGCTTTTCCT | 59.926 | 47.619 | 0.00 | 0.00 | 46.43 | 3.36 |
647 | 999 | 1.534729 | AGTGACCCAATCGCTTTTCC | 58.465 | 50.000 | 0.00 | 0.00 | 46.43 | 3.13 |
664 | 1016 | 2.596553 | TTTGGTTGGGCACGTCGAGT | 62.597 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
665 | 1017 | 1.234615 | ATTTGGTTGGGCACGTCGAG | 61.235 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
666 | 1018 | 0.035036 | TATTTGGTTGGGCACGTCGA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
667 | 1019 | 1.091537 | ATATTTGGTTGGGCACGTCG | 58.908 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
669 | 1021 | 1.181786 | CCATATTTGGTTGGGCACGT | 58.818 | 50.000 | 0.00 | 0.00 | 38.30 | 4.49 |
670 | 1022 | 0.179113 | GCCATATTTGGTTGGGCACG | 60.179 | 55.000 | 4.00 | 0.00 | 45.57 | 5.34 |
671 | 1023 | 0.179113 | CGCCATATTTGGTTGGGCAC | 60.179 | 55.000 | 4.00 | 0.00 | 45.57 | 5.01 |
673 | 1025 | 0.102300 | GACGCCATATTTGGTTGGGC | 59.898 | 55.000 | 4.00 | 0.00 | 45.57 | 5.36 |
674 | 1026 | 0.744281 | GGACGCCATATTTGGTTGGG | 59.256 | 55.000 | 4.00 | 0.00 | 45.57 | 4.12 |
675 | 1027 | 0.380378 | CGGACGCCATATTTGGTTGG | 59.620 | 55.000 | 4.00 | 0.00 | 45.57 | 3.77 |
676 | 1028 | 1.091537 | ACGGACGCCATATTTGGTTG | 58.908 | 50.000 | 4.00 | 0.14 | 45.57 | 3.77 |
677 | 1029 | 2.695127 | TACGGACGCCATATTTGGTT | 57.305 | 45.000 | 4.00 | 0.00 | 45.57 | 3.67 |
678 | 1030 | 2.557317 | CTTACGGACGCCATATTTGGT | 58.443 | 47.619 | 4.00 | 0.00 | 45.57 | 3.67 |
679 | 1031 | 1.871039 | CCTTACGGACGCCATATTTGG | 59.129 | 52.381 | 0.00 | 0.00 | 46.66 | 3.28 |
680 | 1032 | 2.557317 | ACCTTACGGACGCCATATTTG | 58.443 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
681 | 1033 | 2.994186 | ACCTTACGGACGCCATATTT | 57.006 | 45.000 | 0.00 | 0.00 | 0.00 | 1.40 |
683 | 1035 | 2.818432 | CTCTACCTTACGGACGCCATAT | 59.182 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
685 | 1037 | 1.030457 | CTCTACCTTACGGACGCCAT | 58.970 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
687 | 1039 | 1.065251 | CTTCTCTACCTTACGGACGCC | 59.935 | 57.143 | 0.00 | 0.00 | 0.00 | 5.68 |
688 | 1040 | 1.742268 | ACTTCTCTACCTTACGGACGC | 59.258 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
689 | 1041 | 3.311048 | GGTACTTCTCTACCTTACGGACG | 59.689 | 52.174 | 0.00 | 0.00 | 34.34 | 4.79 |
690 | 1042 | 4.335037 | CAGGTACTTCTCTACCTTACGGAC | 59.665 | 50.000 | 0.00 | 0.00 | 43.58 | 4.79 |
692 | 1044 | 4.335037 | GTCAGGTACTTCTCTACCTTACGG | 59.665 | 50.000 | 0.00 | 0.00 | 43.58 | 4.02 |
693 | 1045 | 4.335037 | GGTCAGGTACTTCTCTACCTTACG | 59.665 | 50.000 | 0.00 | 0.00 | 43.58 | 3.18 |
694 | 1046 | 5.508567 | AGGTCAGGTACTTCTCTACCTTAC | 58.491 | 45.833 | 0.00 | 0.00 | 43.58 | 2.34 |
695 | 1047 | 5.793034 | AGGTCAGGTACTTCTCTACCTTA | 57.207 | 43.478 | 0.00 | 0.00 | 43.58 | 2.69 |
696 | 1048 | 4.678538 | AGGTCAGGTACTTCTCTACCTT | 57.321 | 45.455 | 0.00 | 0.00 | 43.58 | 3.50 |
700 | 1052 | 6.355747 | GTTAGCTAGGTCAGGTACTTCTCTA | 58.644 | 44.000 | 0.00 | 0.00 | 36.97 | 2.43 |
701 | 1053 | 5.195185 | GTTAGCTAGGTCAGGTACTTCTCT | 58.805 | 45.833 | 0.00 | 0.00 | 36.97 | 3.10 |
702 | 1054 | 4.338964 | GGTTAGCTAGGTCAGGTACTTCTC | 59.661 | 50.000 | 0.00 | 0.00 | 36.97 | 2.87 |
704 | 1056 | 4.279982 | AGGTTAGCTAGGTCAGGTACTTC | 58.720 | 47.826 | 0.00 | 0.00 | 36.97 | 3.01 |
705 | 1057 | 4.334208 | AGGTTAGCTAGGTCAGGTACTT | 57.666 | 45.455 | 0.00 | 0.00 | 36.97 | 2.24 |
707 | 1059 | 5.383476 | TCATAGGTTAGCTAGGTCAGGTAC | 58.617 | 45.833 | 0.00 | 0.00 | 36.97 | 3.34 |
708 | 1060 | 5.632118 | CTCATAGGTTAGCTAGGTCAGGTA | 58.368 | 45.833 | 0.00 | 0.00 | 36.15 | 3.08 |
709 | 1061 | 4.475345 | CTCATAGGTTAGCTAGGTCAGGT | 58.525 | 47.826 | 0.00 | 0.00 | 38.84 | 4.00 |
710 | 1062 | 3.257127 | GCTCATAGGTTAGCTAGGTCAGG | 59.743 | 52.174 | 0.00 | 0.00 | 35.80 | 3.86 |
719 | 1071 | 6.986817 | TCAAATACTGAAGCTCATAGGTTAGC | 59.013 | 38.462 | 0.00 | 0.00 | 35.86 | 3.09 |
720 | 1072 | 8.948631 | TTCAAATACTGAAGCTCATAGGTTAG | 57.051 | 34.615 | 0.00 | 0.00 | 39.20 | 2.34 |
733 | 1085 | 4.537135 | ACCTCGAGCTTCAAATACTGAA | 57.463 | 40.909 | 6.99 | 0.00 | 41.93 | 3.02 |
734 | 1086 | 4.495422 | GAACCTCGAGCTTCAAATACTGA | 58.505 | 43.478 | 14.31 | 0.00 | 0.00 | 3.41 |
736 | 1088 | 3.192844 | TCGAACCTCGAGCTTCAAATACT | 59.807 | 43.478 | 18.18 | 0.00 | 44.82 | 2.12 |
737 | 1089 | 3.508762 | TCGAACCTCGAGCTTCAAATAC | 58.491 | 45.455 | 18.18 | 0.00 | 44.82 | 1.89 |
738 | 1090 | 3.861276 | TCGAACCTCGAGCTTCAAATA | 57.139 | 42.857 | 18.18 | 0.88 | 44.82 | 1.40 |
739 | 1091 | 2.743636 | TCGAACCTCGAGCTTCAAAT | 57.256 | 45.000 | 18.18 | 0.00 | 44.82 | 2.32 |
749 | 1101 | 6.908284 | TCTTGTAATTTTGTTTTCGAACCTCG | 59.092 | 34.615 | 0.00 | 0.00 | 42.10 | 4.63 |
750 | 1102 | 8.623310 | TTCTTGTAATTTTGTTTTCGAACCTC | 57.377 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
751 | 1103 | 8.248253 | ACTTCTTGTAATTTTGTTTTCGAACCT | 58.752 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
752 | 1104 | 8.402326 | ACTTCTTGTAATTTTGTTTTCGAACC | 57.598 | 30.769 | 0.00 | 0.00 | 0.00 | 3.62 |
779 | 1131 | 8.854117 | GGCCTCATTGACTCTTATATGAAATTT | 58.146 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
781 | 1133 | 7.753630 | AGGCCTCATTGACTCTTATATGAAAT | 58.246 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
782 | 1134 | 7.141758 | AGGCCTCATTGACTCTTATATGAAA | 57.858 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
783 | 1135 | 6.753913 | AGGCCTCATTGACTCTTATATGAA | 57.246 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
784 | 1136 | 7.675619 | TGATAGGCCTCATTGACTCTTATATGA | 59.324 | 37.037 | 9.68 | 0.00 | 0.00 | 2.15 |
786 | 1138 | 8.621126 | ATGATAGGCCTCATTGACTCTTATAT | 57.379 | 34.615 | 9.68 | 0.00 | 31.82 | 0.86 |
787 | 1139 | 8.441311 | AATGATAGGCCTCATTGACTCTTATA | 57.559 | 34.615 | 9.68 | 0.00 | 42.73 | 0.98 |
788 | 1140 | 6.949117 | ATGATAGGCCTCATTGACTCTTAT | 57.051 | 37.500 | 9.68 | 0.00 | 31.82 | 1.73 |
799 | 1263 | 6.065976 | TCTTTTCAGAAATGATAGGCCTCA | 57.934 | 37.500 | 9.68 | 1.61 | 0.00 | 3.86 |
810 | 1274 | 4.262036 | GGGCCGAAACTTCTTTTCAGAAAT | 60.262 | 41.667 | 0.00 | 0.00 | 43.54 | 2.17 |
869 | 1333 | 4.382320 | GGGCGCGTGGGAAGTGTA | 62.382 | 66.667 | 8.43 | 0.00 | 0.00 | 2.90 |
1076 | 1548 | 3.191539 | CGAAGCGCAGGAGGAAGC | 61.192 | 66.667 | 11.47 | 0.00 | 0.00 | 3.86 |
1461 | 1933 | 0.686441 | TCCACCCCATGACCTCGTAG | 60.686 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1471 | 1943 | 0.620410 | TTCTCCGTCATCCACCCCAT | 60.620 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1498 | 1970 | 2.239654 | AGTATGTGACAACATCTGGGGG | 59.760 | 50.000 | 0.00 | 0.00 | 43.85 | 5.40 |
1515 | 1987 | 3.508012 | GCCCACATATCAGAGTCGAGTAT | 59.492 | 47.826 | 0.00 | 0.00 | 0.00 | 2.12 |
1651 | 2123 | 1.422781 | GGCCTCATGAATCATCCCAGA | 59.577 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1689 | 2161 | 0.742505 | CACATCCGGCAGCAATCATT | 59.257 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1757 | 2229 | 3.162666 | TCTACTTCCTCAAAAGCTCCGA | 58.837 | 45.455 | 0.00 | 0.00 | 0.00 | 4.55 |
1758 | 2230 | 3.516615 | CTCTACTTCCTCAAAAGCTCCG | 58.483 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2382 | 2854 | 4.637534 | CAGCTAAGAGCAGCCAAGAATTTA | 59.362 | 41.667 | 0.64 | 0.00 | 45.56 | 1.40 |
2505 | 2977 | 3.541242 | TGTCCAAGAATCCACCCAATT | 57.459 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
2616 | 3088 | 8.929260 | TGAGCATTCTTTCCAATATATGACAT | 57.071 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
2675 | 3148 | 5.444663 | AGCAACAGAACTGGAATTTCTTC | 57.555 | 39.130 | 6.76 | 0.00 | 30.56 | 2.87 |
2694 | 3167 | 8.928448 | AGAGATCTTGGAAAGTACAATATAGCA | 58.072 | 33.333 | 0.00 | 0.00 | 46.34 | 3.49 |
2781 | 3447 | 5.753716 | AGAGGCTCTGCTCATAAAGAAAAT | 58.246 | 37.500 | 17.96 | 0.00 | 0.00 | 1.82 |
2816 | 3483 | 7.764331 | ACTTTCAAGCCTTAAACTTACGAAAA | 58.236 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
2983 | 3859 | 5.874810 | CGAGTCCTTCCATCAGTTGAATTTA | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2984 | 3860 | 4.697352 | CGAGTCCTTCCATCAGTTGAATTT | 59.303 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2985 | 3861 | 4.020218 | TCGAGTCCTTCCATCAGTTGAATT | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
3132 | 4034 | 3.244181 | GGAGCAAAAAGGAAATGCAGGAA | 60.244 | 43.478 | 0.00 | 0.00 | 42.45 | 3.36 |
3223 | 4125 | 2.703536 | TGTTGGCACTAGTGAAGGAGAA | 59.296 | 45.455 | 27.08 | 5.90 | 0.00 | 2.87 |
3266 | 4168 | 2.126734 | GCGCATGAACACACCAGC | 60.127 | 61.111 | 0.30 | 0.00 | 0.00 | 4.85 |
3295 | 4197 | 0.670546 | AGAATCCCACTGTTGCGACG | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
3304 | 4206 | 5.104569 | GGATGAAGAAGAGAAGAATCCCACT | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3412 | 4314 | 1.154225 | GCAACGAGCAAATGACCCG | 60.154 | 57.895 | 0.00 | 0.00 | 44.79 | 5.28 |
3512 | 4414 | 7.127955 | ACCCTTCATTAAGATCTTCACCATAGT | 59.872 | 37.037 | 12.24 | 0.00 | 34.37 | 2.12 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.