Multiple sequence alignment - TraesCS1A01G247100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G247100 chr1A 100.000 4382 0 0 1 4382 438369309 438364928 0.000000e+00 8093.0
1 TraesCS1A01G247100 chr1A 83.796 432 43 12 3112 3526 438340365 438339944 6.870000e-103 385.0
2 TraesCS1A01G247100 chr1A 87.302 252 27 3 2823 3071 438340602 438340353 2.580000e-72 283.0
3 TraesCS1A01G247100 chr1D 94.078 3884 154 31 541 4382 338944201 338940352 0.000000e+00 5829.0
4 TraesCS1A01G247100 chr1D 86.454 251 26 5 2823 3071 338937805 338937561 7.220000e-68 268.0
5 TraesCS1A01G247100 chr1D 88.350 206 22 2 2823 3026 338938328 338938123 3.380000e-61 246.0
6 TraesCS1A01G247100 chr1D 85.802 162 12 2 3112 3270 338937573 338937420 1.260000e-35 161.0
7 TraesCS1A01G247100 chr1D 92.857 70 5 0 443 512 339046064 339045995 7.750000e-18 102.0
8 TraesCS1A01G247100 chr1B 95.445 2810 104 13 831 3638 453515699 453512912 0.000000e+00 4458.0
9 TraesCS1A01G247100 chr1B 92.890 436 29 2 3949 4382 453512599 453512164 2.220000e-177 632.0
10 TraesCS1A01G247100 chr1B 94.850 233 11 1 3722 3953 453512909 453512677 3.220000e-96 363.0
11 TraesCS1A01G247100 chr1B 86.400 250 27 4 2823 3071 453510792 453510549 2.600000e-67 267.0
12 TraesCS1A01G247100 chr7B 74.092 413 95 9 12 417 701774387 701773980 4.540000e-35 159.0
13 TraesCS1A01G247100 chr7B 84.375 128 20 0 41 168 86177524 86177397 4.600000e-25 126.0
14 TraesCS1A01G247100 chr5A 75.126 398 61 26 41 423 386454099 386453725 7.590000e-33 152.0
15 TraesCS1A01G247100 chr7D 83.784 148 23 1 3820 3966 530125421 530125568 5.910000e-29 139.0
16 TraesCS1A01G247100 chr2D 85.455 110 15 1 3850 3958 11976295 11976404 3.580000e-21 113.0
17 TraesCS1A01G247100 chr2A 80.690 145 28 0 3814 3958 12713512 12713656 3.580000e-21 113.0
18 TraesCS1A01G247100 chr4D 80.000 110 20 2 3830 3938 22989741 22989633 3.630000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G247100 chr1A 438364928 438369309 4381 True 8093 8093 100.00000 1 4382 1 chr1A.!!$R1 4381
1 TraesCS1A01G247100 chr1A 438339944 438340602 658 True 334 385 85.54900 2823 3526 2 chr1A.!!$R2 703
2 TraesCS1A01G247100 chr1D 338937420 338944201 6781 True 1626 5829 88.67100 541 4382 4 chr1D.!!$R2 3841
3 TraesCS1A01G247100 chr1B 453510549 453515699 5150 True 1430 4458 92.39625 831 4382 4 chr1B.!!$R1 3551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.034337 ACGAAGGCGAGCAAAACCTA 59.966 50.0 0.00 0.00 41.64 3.08 F
56 57 0.035343 AAAACCTAGGCCGCTCCTTC 60.035 55.0 9.30 0.00 44.75 3.46 F
272 273 0.036577 CTGACTGCAACCTGGAGGAG 60.037 60.0 0.00 5.78 40.38 3.69 F
490 491 0.038526 ACGTGAGGTAGAAGTTGCGG 60.039 55.0 0.00 0.00 0.00 5.69 F
690 691 0.041400 CGCACGCAATGAACTGTTCA 60.041 50.0 23.94 23.94 45.01 3.18 F
1758 1799 0.384309 CGCCGTCTATGAGTTGCCTA 59.616 55.0 0.00 0.00 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 1851 0.251474 AGCTTCTCCAATGGCAAGCA 60.251 50.000 26.85 0.39 39.34 3.91 R
1959 2000 0.738389 ACACTGGTTCCAGCAAAACG 59.262 50.000 17.55 3.81 37.57 3.60 R
2057 2098 1.284657 CGTGATAGCTGAAGCACTGG 58.715 55.000 4.90 0.00 45.16 4.00 R
2412 2453 0.179040 AAAGAACCGGGTCGAAAGCA 60.179 50.000 15.29 0.00 0.00 3.91 R
2596 2637 2.745037 GTCCCCGCTACCACACAA 59.255 61.111 0.00 0.00 0.00 3.33 R
3670 3730 0.725686 CATCTTCTCAGGTGCTTGCG 59.274 55.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.476199 CAGATTTCTCCCCTCTCCTGT 58.524 52.381 0.00 0.00 0.00 4.00
21 22 2.170187 CAGATTTCTCCCCTCTCCTGTG 59.830 54.545 0.00 0.00 0.00 3.66
22 23 2.045047 AGATTTCTCCCCTCTCCTGTGA 59.955 50.000 0.00 0.00 0.00 3.58
23 24 2.415983 TTTCTCCCCTCTCCTGTGAA 57.584 50.000 0.00 0.00 0.00 3.18
24 25 1.944177 TTCTCCCCTCTCCTGTGAAG 58.056 55.000 0.00 0.00 0.00 3.02
25 26 1.084866 TCTCCCCTCTCCTGTGAAGA 58.915 55.000 0.00 0.00 0.00 2.87
26 27 1.190643 CTCCCCTCTCCTGTGAAGAC 58.809 60.000 0.00 0.00 0.00 3.01
27 28 0.612174 TCCCCTCTCCTGTGAAGACG 60.612 60.000 0.00 0.00 0.00 4.18
28 29 0.612174 CCCCTCTCCTGTGAAGACGA 60.612 60.000 0.00 0.00 0.00 4.20
29 30 1.257743 CCCTCTCCTGTGAAGACGAA 58.742 55.000 0.00 0.00 0.00 3.85
30 31 1.203523 CCCTCTCCTGTGAAGACGAAG 59.796 57.143 0.00 0.00 0.00 3.79
31 32 1.203523 CCTCTCCTGTGAAGACGAAGG 59.796 57.143 0.00 0.00 0.00 3.46
32 33 0.603569 TCTCCTGTGAAGACGAAGGC 59.396 55.000 0.00 0.00 0.00 4.35
33 34 0.734253 CTCCTGTGAAGACGAAGGCG 60.734 60.000 0.00 0.00 44.79 5.52
34 35 1.176619 TCCTGTGAAGACGAAGGCGA 61.177 55.000 0.00 0.00 41.64 5.54
35 36 0.734253 CCTGTGAAGACGAAGGCGAG 60.734 60.000 0.00 0.00 41.64 5.03
36 37 1.347817 CTGTGAAGACGAAGGCGAGC 61.348 60.000 0.00 0.00 41.64 5.03
37 38 1.372997 GTGAAGACGAAGGCGAGCA 60.373 57.895 0.00 0.00 41.64 4.26
38 39 0.944311 GTGAAGACGAAGGCGAGCAA 60.944 55.000 0.00 0.00 41.64 3.91
39 40 0.249699 TGAAGACGAAGGCGAGCAAA 60.250 50.000 0.00 0.00 41.64 3.68
40 41 0.865769 GAAGACGAAGGCGAGCAAAA 59.134 50.000 0.00 0.00 41.64 2.44
41 42 0.586802 AAGACGAAGGCGAGCAAAAC 59.413 50.000 0.00 0.00 41.64 2.43
42 43 1.206831 GACGAAGGCGAGCAAAACC 59.793 57.895 0.00 0.00 41.64 3.27
43 44 1.227853 ACGAAGGCGAGCAAAACCT 60.228 52.632 0.00 0.00 41.64 3.50
44 45 0.034337 ACGAAGGCGAGCAAAACCTA 59.966 50.000 0.00 0.00 41.64 3.08
45 46 0.721718 CGAAGGCGAGCAAAACCTAG 59.278 55.000 0.00 0.00 40.82 3.02
46 47 1.087501 GAAGGCGAGCAAAACCTAGG 58.912 55.000 7.41 7.41 32.08 3.02
47 48 0.960861 AAGGCGAGCAAAACCTAGGC 60.961 55.000 9.30 0.00 32.08 3.93
48 49 2.407428 GGCGAGCAAAACCTAGGCC 61.407 63.158 9.30 0.00 0.00 5.19
49 50 2.750888 GCGAGCAAAACCTAGGCCG 61.751 63.158 9.30 2.63 0.00 6.13
50 51 2.750888 CGAGCAAAACCTAGGCCGC 61.751 63.158 9.30 6.44 0.00 6.53
51 52 1.377333 GAGCAAAACCTAGGCCGCT 60.377 57.895 9.30 11.60 0.00 5.52
52 53 1.369839 GAGCAAAACCTAGGCCGCTC 61.370 60.000 20.18 20.18 39.10 5.03
53 54 2.407428 GCAAAACCTAGGCCGCTCC 61.407 63.158 9.30 0.00 0.00 4.70
55 56 0.322546 CAAAACCTAGGCCGCTCCTT 60.323 55.000 9.30 0.00 44.75 3.36
56 57 0.035343 AAAACCTAGGCCGCTCCTTC 60.035 55.000 9.30 0.00 44.75 3.46
57 58 2.240162 AAACCTAGGCCGCTCCTTCG 62.240 60.000 9.30 0.00 44.75 3.79
58 59 4.593864 CCTAGGCCGCTCCTTCGC 62.594 72.222 0.00 0.00 44.75 4.70
59 60 3.532155 CTAGGCCGCTCCTTCGCT 61.532 66.667 0.00 0.00 44.75 4.93
60 61 3.781770 CTAGGCCGCTCCTTCGCTG 62.782 68.421 0.00 0.00 44.75 5.18
64 65 3.494336 CCGCTCCTTCGCTGCAAG 61.494 66.667 0.00 2.81 0.00 4.01
75 76 3.441290 CTGCAAGCTGCCTCTGCC 61.441 66.667 14.10 0.94 44.23 4.85
78 79 4.399395 CAAGCTGCCTCTGCCGGA 62.399 66.667 5.05 0.00 36.33 5.14
79 80 4.093291 AAGCTGCCTCTGCCGGAG 62.093 66.667 5.05 0.00 41.51 4.63
82 83 4.527583 CTGCCTCTGCCGGAGCTC 62.528 72.222 5.05 4.71 40.57 4.09
86 87 4.154347 CTCTGCCGGAGCTCCCAC 62.154 72.222 27.20 18.97 40.80 4.61
87 88 4.704103 TCTGCCGGAGCTCCCACT 62.704 66.667 27.20 0.00 40.80 4.00
88 89 3.710722 CTGCCGGAGCTCCCACTT 61.711 66.667 27.20 0.00 40.80 3.16
89 90 3.249189 TGCCGGAGCTCCCACTTT 61.249 61.111 27.20 0.00 40.80 2.66
90 91 2.436824 GCCGGAGCTCCCACTTTC 60.437 66.667 27.20 6.04 35.50 2.62
91 92 2.125512 CCGGAGCTCCCACTTTCG 60.126 66.667 27.20 12.90 34.14 3.46
92 93 2.125512 CGGAGCTCCCACTTTCGG 60.126 66.667 27.20 6.40 34.14 4.30
93 94 2.436824 GGAGCTCCCACTTTCGGC 60.437 66.667 23.19 0.00 34.14 5.54
94 95 2.815647 GAGCTCCCACTTTCGGCG 60.816 66.667 0.87 0.00 0.00 6.46
95 96 3.296709 GAGCTCCCACTTTCGGCGA 62.297 63.158 4.99 4.99 0.00 5.54
96 97 3.119096 GCTCCCACTTTCGGCGAC 61.119 66.667 10.16 0.00 0.00 5.19
135 136 2.044551 GGCCTGGCCTTCTCCAAG 60.045 66.667 30.42 0.00 46.69 3.61
143 144 3.071580 CCTTCTCCAAGGCATCGTC 57.928 57.895 0.00 0.00 43.14 4.20
144 145 0.807667 CCTTCTCCAAGGCATCGTCG 60.808 60.000 0.00 0.00 43.14 5.12
145 146 0.108615 CTTCTCCAAGGCATCGTCGT 60.109 55.000 0.00 0.00 0.00 4.34
146 147 0.389817 TTCTCCAAGGCATCGTCGTG 60.390 55.000 0.00 0.00 0.00 4.35
147 148 1.811266 CTCCAAGGCATCGTCGTGG 60.811 63.158 0.00 0.00 0.00 4.94
148 149 3.499737 CCAAGGCATCGTCGTGGC 61.500 66.667 11.55 11.55 44.31 5.01
188 189 4.704833 GCCTCCACGCCTGCAGAA 62.705 66.667 17.39 0.00 0.00 3.02
189 190 2.435586 CCTCCACGCCTGCAGAAG 60.436 66.667 17.39 11.14 0.00 2.85
215 216 4.697756 CCCGCGAAGGAACCAGCA 62.698 66.667 8.23 0.00 45.00 4.41
216 217 3.121030 CCGCGAAGGAACCAGCAG 61.121 66.667 8.23 0.00 45.00 4.24
217 218 2.048222 CGCGAAGGAACCAGCAGA 60.048 61.111 0.00 0.00 0.00 4.26
218 219 2.097038 CGCGAAGGAACCAGCAGAG 61.097 63.158 0.00 0.00 0.00 3.35
219 220 2.394563 GCGAAGGAACCAGCAGAGC 61.395 63.158 0.00 0.00 0.00 4.09
220 221 1.743252 CGAAGGAACCAGCAGAGCC 60.743 63.158 0.00 0.00 0.00 4.70
221 222 1.377856 GAAGGAACCAGCAGAGCCC 60.378 63.158 0.00 0.00 0.00 5.19
222 223 2.129555 GAAGGAACCAGCAGAGCCCA 62.130 60.000 0.00 0.00 0.00 5.36
223 224 1.719063 AAGGAACCAGCAGAGCCCAA 61.719 55.000 0.00 0.00 0.00 4.12
224 225 1.973812 GGAACCAGCAGAGCCCAAC 60.974 63.158 0.00 0.00 0.00 3.77
225 226 2.281761 AACCAGCAGAGCCCAACG 60.282 61.111 0.00 0.00 0.00 4.10
226 227 2.731691 GAACCAGCAGAGCCCAACGA 62.732 60.000 0.00 0.00 0.00 3.85
227 228 2.129555 AACCAGCAGAGCCCAACGAT 62.130 55.000 0.00 0.00 0.00 3.73
228 229 1.377725 CCAGCAGAGCCCAACGATT 60.378 57.895 0.00 0.00 0.00 3.34
229 230 1.372087 CCAGCAGAGCCCAACGATTC 61.372 60.000 0.00 0.00 0.00 2.52
230 231 1.448540 AGCAGAGCCCAACGATTCG 60.449 57.895 4.14 4.14 0.00 3.34
231 232 2.464459 GCAGAGCCCAACGATTCGG 61.464 63.158 11.29 0.00 0.00 4.30
232 233 1.218047 CAGAGCCCAACGATTCGGA 59.782 57.895 11.29 0.00 0.00 4.55
233 234 0.807667 CAGAGCCCAACGATTCGGAG 60.808 60.000 11.29 2.12 0.00 4.63
234 235 0.970937 AGAGCCCAACGATTCGGAGA 60.971 55.000 11.29 0.00 0.00 3.71
235 236 0.528684 GAGCCCAACGATTCGGAGAG 60.529 60.000 11.29 0.00 38.43 3.20
236 237 0.970937 AGCCCAACGATTCGGAGAGA 60.971 55.000 11.29 0.00 38.43 3.10
237 238 0.806492 GCCCAACGATTCGGAGAGAC 60.806 60.000 11.29 0.00 38.43 3.36
238 239 0.179108 CCCAACGATTCGGAGAGACC 60.179 60.000 11.29 0.00 38.43 3.85
239 240 0.530744 CCAACGATTCGGAGAGACCA 59.469 55.000 11.29 0.00 38.43 4.02
240 241 1.067142 CCAACGATTCGGAGAGACCAA 60.067 52.381 11.29 0.00 38.43 3.67
241 242 2.263077 CAACGATTCGGAGAGACCAAG 58.737 52.381 11.29 0.00 38.43 3.61
242 243 1.835494 ACGATTCGGAGAGACCAAGA 58.165 50.000 11.29 0.00 38.43 3.02
243 244 1.473278 ACGATTCGGAGAGACCAAGAC 59.527 52.381 11.29 0.00 38.43 3.01
244 245 1.202313 CGATTCGGAGAGACCAAGACC 60.202 57.143 0.00 0.00 38.43 3.85
245 246 0.818296 ATTCGGAGAGACCAAGACCG 59.182 55.000 0.00 0.00 44.09 4.79
246 247 1.248785 TTCGGAGAGACCAAGACCGG 61.249 60.000 0.00 0.00 43.14 5.28
247 248 1.677966 CGGAGAGACCAAGACCGGA 60.678 63.158 9.46 0.00 39.92 5.14
248 249 1.891616 GGAGAGACCAAGACCGGAC 59.108 63.158 9.46 0.10 38.79 4.79
249 250 0.898789 GGAGAGACCAAGACCGGACA 60.899 60.000 9.46 0.00 38.79 4.02
250 251 0.244178 GAGAGACCAAGACCGGACAC 59.756 60.000 9.46 0.00 0.00 3.67
251 252 1.186267 AGAGACCAAGACCGGACACC 61.186 60.000 9.46 0.00 0.00 4.16
252 253 1.458777 AGACCAAGACCGGACACCA 60.459 57.895 9.46 0.00 0.00 4.17
253 254 1.301479 GACCAAGACCGGACACCAC 60.301 63.158 9.46 0.00 0.00 4.16
254 255 1.755393 GACCAAGACCGGACACCACT 61.755 60.000 9.46 0.00 0.00 4.00
255 256 1.301716 CCAAGACCGGACACCACTG 60.302 63.158 9.46 0.00 0.00 3.66
256 257 1.745890 CAAGACCGGACACCACTGA 59.254 57.895 9.46 0.00 0.00 3.41
257 258 0.600255 CAAGACCGGACACCACTGAC 60.600 60.000 9.46 0.00 0.00 3.51
258 259 0.759436 AAGACCGGACACCACTGACT 60.759 55.000 9.46 0.00 0.00 3.41
259 260 1.006102 GACCGGACACCACTGACTG 60.006 63.158 9.46 0.00 0.00 3.51
260 261 2.357517 CCGGACACCACTGACTGC 60.358 66.667 0.00 0.00 0.00 4.40
261 262 2.421314 CGGACACCACTGACTGCA 59.579 61.111 0.00 0.00 0.00 4.41
262 263 1.227527 CGGACACCACTGACTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
263 264 1.498865 CGGACACCACTGACTGCAAC 61.499 60.000 0.00 0.00 0.00 4.17
264 265 1.166531 GGACACCACTGACTGCAACC 61.167 60.000 0.00 0.00 0.00 3.77
265 266 0.179045 GACACCACTGACTGCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
266 267 0.464373 ACACCACTGACTGCAACCTG 60.464 55.000 0.00 0.00 0.00 4.00
267 268 1.149174 ACCACTGACTGCAACCTGG 59.851 57.895 0.00 0.00 0.00 4.45
268 269 1.344953 ACCACTGACTGCAACCTGGA 61.345 55.000 0.00 0.00 0.00 3.86
269 270 0.604780 CCACTGACTGCAACCTGGAG 60.605 60.000 0.00 0.00 41.93 3.86
270 271 0.604780 CACTGACTGCAACCTGGAGG 60.605 60.000 0.00 0.00 40.38 4.30
271 272 0.764369 ACTGACTGCAACCTGGAGGA 60.764 55.000 0.00 0.00 40.38 3.71
272 273 0.036577 CTGACTGCAACCTGGAGGAG 60.037 60.000 0.00 5.78 40.38 3.69
273 274 0.471780 TGACTGCAACCTGGAGGAGA 60.472 55.000 16.17 0.00 40.38 3.71
274 275 0.908198 GACTGCAACCTGGAGGAGAT 59.092 55.000 16.17 4.23 40.38 2.75
275 276 0.908198 ACTGCAACCTGGAGGAGATC 59.092 55.000 16.17 0.00 40.38 2.75
276 277 0.179089 CTGCAACCTGGAGGAGATCG 60.179 60.000 0.00 0.00 38.94 3.69
277 278 0.614697 TGCAACCTGGAGGAGATCGA 60.615 55.000 0.00 0.00 38.94 3.59
278 279 0.537188 GCAACCTGGAGGAGATCGAA 59.463 55.000 0.00 0.00 38.94 3.71
279 280 1.740718 GCAACCTGGAGGAGATCGAAC 60.741 57.143 0.00 0.00 38.94 3.95
280 281 1.550524 CAACCTGGAGGAGATCGAACA 59.449 52.381 0.00 0.00 38.94 3.18
281 282 1.187087 ACCTGGAGGAGATCGAACAC 58.813 55.000 0.00 0.00 38.94 3.32
282 283 1.186200 CCTGGAGGAGATCGAACACA 58.814 55.000 0.00 0.00 37.39 3.72
283 284 1.135915 CCTGGAGGAGATCGAACACAG 59.864 57.143 0.00 3.70 37.39 3.66
284 285 1.135915 CTGGAGGAGATCGAACACAGG 59.864 57.143 0.00 0.00 0.00 4.00
285 286 0.179097 GGAGGAGATCGAACACAGGC 60.179 60.000 0.00 0.00 0.00 4.85
286 287 0.820871 GAGGAGATCGAACACAGGCT 59.179 55.000 0.00 0.00 0.00 4.58
287 288 0.534412 AGGAGATCGAACACAGGCTG 59.466 55.000 14.16 14.16 0.00 4.85
288 289 0.460987 GGAGATCGAACACAGGCTGG 60.461 60.000 20.34 10.34 0.00 4.85
289 290 0.532573 GAGATCGAACACAGGCTGGA 59.467 55.000 20.34 6.14 0.00 3.86
290 291 0.534412 AGATCGAACACAGGCTGGAG 59.466 55.000 20.34 13.35 0.00 3.86
291 292 0.460987 GATCGAACACAGGCTGGAGG 60.461 60.000 20.34 10.36 0.00 4.30
292 293 1.903877 ATCGAACACAGGCTGGAGGG 61.904 60.000 20.34 7.77 0.00 4.30
293 294 2.352805 GAACACAGGCTGGAGGGG 59.647 66.667 20.34 5.22 0.00 4.79
294 295 2.450502 AACACAGGCTGGAGGGGT 60.451 61.111 20.34 5.87 0.00 4.95
295 296 2.470938 GAACACAGGCTGGAGGGGTC 62.471 65.000 20.34 9.53 0.00 4.46
296 297 2.930019 CACAGGCTGGAGGGGTCA 60.930 66.667 20.34 0.00 0.00 4.02
297 298 2.121963 ACAGGCTGGAGGGGTCAA 60.122 61.111 20.34 0.00 0.00 3.18
298 299 1.774217 ACAGGCTGGAGGGGTCAAA 60.774 57.895 20.34 0.00 0.00 2.69
299 300 1.001641 CAGGCTGGAGGGGTCAAAG 60.002 63.158 6.61 0.00 0.00 2.77
300 301 2.234296 AGGCTGGAGGGGTCAAAGG 61.234 63.158 0.00 0.00 0.00 3.11
301 302 2.361737 GCTGGAGGGGTCAAAGGC 60.362 66.667 0.00 0.00 0.00 4.35
302 303 2.356667 CTGGAGGGGTCAAAGGCC 59.643 66.667 0.00 0.00 0.00 5.19
303 304 2.451493 TGGAGGGGTCAAAGGCCA 60.451 61.111 5.01 0.00 0.00 5.36
304 305 1.856873 TGGAGGGGTCAAAGGCCAT 60.857 57.895 5.01 0.00 0.00 4.40
305 306 1.380380 GGAGGGGTCAAAGGCCATG 60.380 63.158 5.01 3.36 0.00 3.66
306 307 1.691219 GAGGGGTCAAAGGCCATGA 59.309 57.895 5.01 6.30 0.00 3.07
307 308 0.259938 GAGGGGTCAAAGGCCATGAT 59.740 55.000 13.63 0.00 0.00 2.45
308 309 0.259938 AGGGGTCAAAGGCCATGATC 59.740 55.000 13.63 12.91 0.00 2.92
309 310 1.103398 GGGGTCAAAGGCCATGATCG 61.103 60.000 13.63 0.00 0.00 3.69
310 311 0.107214 GGGTCAAAGGCCATGATCGA 60.107 55.000 13.63 0.00 0.00 3.59
311 312 1.303309 GGTCAAAGGCCATGATCGAG 58.697 55.000 13.63 0.00 0.00 4.04
312 313 1.303309 GTCAAAGGCCATGATCGAGG 58.697 55.000 13.63 0.00 0.00 4.63
320 321 1.027357 CCATGATCGAGGCAAAAGGG 58.973 55.000 0.00 0.00 0.00 3.95
321 322 1.683011 CCATGATCGAGGCAAAAGGGT 60.683 52.381 0.00 0.00 0.00 4.34
322 323 1.672881 CATGATCGAGGCAAAAGGGTC 59.327 52.381 0.00 0.00 0.00 4.46
323 324 0.391130 TGATCGAGGCAAAAGGGTCG 60.391 55.000 0.00 0.00 0.00 4.79
324 325 1.706287 GATCGAGGCAAAAGGGTCGC 61.706 60.000 0.00 0.00 32.41 5.19
325 326 3.788766 CGAGGCAAAAGGGTCGCG 61.789 66.667 0.00 0.00 0.00 5.87
326 327 3.431725 GAGGCAAAAGGGTCGCGG 61.432 66.667 6.13 0.00 0.00 6.46
343 344 4.695791 GGGGGAGGGGGAGTGGTT 62.696 72.222 0.00 0.00 0.00 3.67
344 345 3.339093 GGGGAGGGGGAGTGGTTG 61.339 72.222 0.00 0.00 0.00 3.77
345 346 4.048470 GGGAGGGGGAGTGGTTGC 62.048 72.222 0.00 0.00 0.00 4.17
346 347 4.048470 GGAGGGGGAGTGGTTGCC 62.048 72.222 0.00 0.00 36.35 4.52
347 348 4.410400 GAGGGGGAGTGGTTGCCG 62.410 72.222 0.00 0.00 38.39 5.69
422 423 4.144727 GGAGCGGGGGAGGAGAGA 62.145 72.222 0.00 0.00 0.00 3.10
423 424 2.520741 GAGCGGGGGAGGAGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
424 425 3.351885 AGCGGGGGAGGAGAGAGT 61.352 66.667 0.00 0.00 0.00 3.24
425 426 2.364448 GCGGGGGAGGAGAGAGTT 60.364 66.667 0.00 0.00 0.00 3.01
426 427 2.428085 GCGGGGGAGGAGAGAGTTC 61.428 68.421 0.00 0.00 0.00 3.01
427 428 1.308326 CGGGGGAGGAGAGAGTTCT 59.692 63.158 0.00 0.00 36.01 3.01
428 429 0.551879 CGGGGGAGGAGAGAGTTCTA 59.448 60.000 0.00 0.00 32.53 2.10
429 430 1.146152 CGGGGGAGGAGAGAGTTCTAT 59.854 57.143 0.00 0.00 32.53 1.98
430 431 2.816337 CGGGGGAGGAGAGAGTTCTATC 60.816 59.091 0.00 0.00 32.53 2.08
441 442 6.926630 AGAGAGTTCTATCCACTTGTTTCT 57.073 37.500 0.00 0.00 0.00 2.52
442 443 6.930731 AGAGAGTTCTATCCACTTGTTTCTC 58.069 40.000 0.00 0.00 0.00 2.87
443 444 6.495181 AGAGAGTTCTATCCACTTGTTTCTCA 59.505 38.462 0.00 0.00 32.02 3.27
444 445 7.015682 AGAGAGTTCTATCCACTTGTTTCTCAA 59.984 37.037 0.00 0.00 32.02 3.02
452 453 0.600057 CTTGTTTCTCAAGCAGGGGC 59.400 55.000 0.00 0.00 45.37 5.80
453 454 3.074673 CTTGTTTCTCAAGCAGGGGCG 62.075 57.143 0.00 0.00 45.37 6.13
463 464 2.122813 CAGGGGCGGACCTAGGAT 60.123 66.667 17.98 0.00 39.34 3.24
464 465 2.201771 AGGGGCGGACCTAGGATC 59.798 66.667 17.98 9.26 39.65 3.36
465 466 2.201771 GGGGCGGACCTAGGATCT 59.798 66.667 17.98 0.00 40.03 2.75
466 467 1.072505 AGGGGCGGACCTAGGATCTA 61.073 60.000 17.98 0.00 39.65 1.98
467 468 0.178941 GGGGCGGACCTAGGATCTAA 60.179 60.000 17.98 0.00 40.03 2.10
468 469 1.552719 GGGGCGGACCTAGGATCTAAT 60.553 57.143 17.98 0.00 40.03 1.73
469 470 2.258109 GGGCGGACCTAGGATCTAATT 58.742 52.381 17.98 0.00 35.85 1.40
470 471 2.234168 GGGCGGACCTAGGATCTAATTC 59.766 54.545 17.98 0.00 35.85 2.17
471 472 2.897969 GGCGGACCTAGGATCTAATTCA 59.102 50.000 17.98 0.00 0.00 2.57
472 473 3.306156 GGCGGACCTAGGATCTAATTCAC 60.306 52.174 17.98 0.00 0.00 3.18
473 474 3.612004 GCGGACCTAGGATCTAATTCACG 60.612 52.174 17.98 7.63 0.00 4.35
474 475 3.568853 CGGACCTAGGATCTAATTCACGT 59.431 47.826 17.98 0.00 0.00 4.49
475 476 4.556898 CGGACCTAGGATCTAATTCACGTG 60.557 50.000 17.98 9.94 0.00 4.49
476 477 4.583489 GGACCTAGGATCTAATTCACGTGA 59.417 45.833 17.98 15.76 0.00 4.35
477 478 5.278561 GGACCTAGGATCTAATTCACGTGAG 60.279 48.000 19.11 7.29 0.00 3.51
478 479 4.585162 ACCTAGGATCTAATTCACGTGAGG 59.415 45.833 19.11 13.69 0.00 3.86
479 480 4.585162 CCTAGGATCTAATTCACGTGAGGT 59.415 45.833 19.11 12.86 0.00 3.85
480 481 5.768662 CCTAGGATCTAATTCACGTGAGGTA 59.231 44.000 19.11 13.31 0.00 3.08
481 482 5.776173 AGGATCTAATTCACGTGAGGTAG 57.224 43.478 19.11 21.17 0.00 3.18
482 483 5.446860 AGGATCTAATTCACGTGAGGTAGA 58.553 41.667 28.29 28.29 0.00 2.59
483 484 5.892119 AGGATCTAATTCACGTGAGGTAGAA 59.108 40.000 29.14 19.17 30.33 2.10
484 485 6.039941 AGGATCTAATTCACGTGAGGTAGAAG 59.960 42.308 29.14 18.52 30.33 2.85
485 486 6.183360 GGATCTAATTCACGTGAGGTAGAAGT 60.183 42.308 29.14 20.28 30.33 3.01
486 487 6.585695 TCTAATTCACGTGAGGTAGAAGTT 57.414 37.500 25.97 9.82 0.00 2.66
487 488 6.387465 TCTAATTCACGTGAGGTAGAAGTTG 58.613 40.000 25.97 11.24 0.00 3.16
488 489 2.433868 TCACGTGAGGTAGAAGTTGC 57.566 50.000 15.76 0.00 0.00 4.17
489 490 1.060713 CACGTGAGGTAGAAGTTGCG 58.939 55.000 10.90 0.00 0.00 4.85
490 491 0.038526 ACGTGAGGTAGAAGTTGCGG 60.039 55.000 0.00 0.00 0.00 5.69
491 492 0.242825 CGTGAGGTAGAAGTTGCGGA 59.757 55.000 0.00 0.00 0.00 5.54
492 493 1.732732 CGTGAGGTAGAAGTTGCGGAG 60.733 57.143 0.00 0.00 0.00 4.63
493 494 1.544691 GTGAGGTAGAAGTTGCGGAGA 59.455 52.381 0.00 0.00 0.00 3.71
494 495 2.029290 GTGAGGTAGAAGTTGCGGAGAA 60.029 50.000 0.00 0.00 0.00 2.87
495 496 2.631062 TGAGGTAGAAGTTGCGGAGAAA 59.369 45.455 0.00 0.00 0.00 2.52
496 497 3.260884 TGAGGTAGAAGTTGCGGAGAAAT 59.739 43.478 0.00 0.00 0.00 2.17
497 498 4.254492 GAGGTAGAAGTTGCGGAGAAATT 58.746 43.478 0.00 0.00 0.00 1.82
498 499 5.046878 TGAGGTAGAAGTTGCGGAGAAATTA 60.047 40.000 0.00 0.00 0.00 1.40
499 500 5.176592 AGGTAGAAGTTGCGGAGAAATTAC 58.823 41.667 0.00 0.00 0.00 1.89
500 501 4.933400 GGTAGAAGTTGCGGAGAAATTACA 59.067 41.667 0.00 0.00 0.00 2.41
501 502 5.163884 GGTAGAAGTTGCGGAGAAATTACAC 60.164 44.000 0.00 0.00 0.00 2.90
502 503 4.385825 AGAAGTTGCGGAGAAATTACACA 58.614 39.130 0.00 0.00 0.00 3.72
503 504 4.819630 AGAAGTTGCGGAGAAATTACACAA 59.180 37.500 0.00 0.00 0.00 3.33
504 505 5.298276 AGAAGTTGCGGAGAAATTACACAAA 59.702 36.000 0.00 0.00 0.00 2.83
505 506 5.508200 AGTTGCGGAGAAATTACACAAAA 57.492 34.783 0.00 0.00 0.00 2.44
506 507 5.519722 AGTTGCGGAGAAATTACACAAAAG 58.480 37.500 0.00 0.00 0.00 2.27
507 508 5.067283 AGTTGCGGAGAAATTACACAAAAGT 59.933 36.000 0.00 0.00 0.00 2.66
508 509 6.261381 AGTTGCGGAGAAATTACACAAAAGTA 59.739 34.615 0.00 0.00 0.00 2.24
509 510 6.621316 TGCGGAGAAATTACACAAAAGTAA 57.379 33.333 0.00 0.00 38.25 2.24
510 511 7.209471 TGCGGAGAAATTACACAAAAGTAAT 57.791 32.000 0.00 0.00 44.32 1.89
511 512 8.325421 TGCGGAGAAATTACACAAAAGTAATA 57.675 30.769 0.00 0.00 42.27 0.98
512 513 8.447833 TGCGGAGAAATTACACAAAAGTAATAG 58.552 33.333 0.00 0.00 42.27 1.73
513 514 7.428472 GCGGAGAAATTACACAAAAGTAATAGC 59.572 37.037 0.00 0.00 42.27 2.97
514 515 8.447833 CGGAGAAATTACACAAAAGTAATAGCA 58.552 33.333 0.00 0.00 42.27 3.49
523 524 8.856490 ACACAAAAGTAATAGCAAAACTGAAG 57.144 30.769 0.00 0.00 0.00 3.02
524 525 8.466798 ACACAAAAGTAATAGCAAAACTGAAGT 58.533 29.630 0.00 0.00 0.00 3.01
525 526 9.944663 CACAAAAGTAATAGCAAAACTGAAGTA 57.055 29.630 0.00 0.00 0.00 2.24
535 536 7.849804 AGCAAAACTGAAGTAATATGATCGT 57.150 32.000 0.00 0.00 0.00 3.73
536 537 7.688372 AGCAAAACTGAAGTAATATGATCGTG 58.312 34.615 0.00 0.00 0.00 4.35
537 538 7.334421 AGCAAAACTGAAGTAATATGATCGTGT 59.666 33.333 0.00 0.00 0.00 4.49
538 539 7.636359 GCAAAACTGAAGTAATATGATCGTGTC 59.364 37.037 0.00 0.00 0.00 3.67
539 540 8.655970 CAAAACTGAAGTAATATGATCGTGTCA 58.344 33.333 0.00 0.00 42.06 3.58
540 541 8.771920 AAACTGAAGTAATATGATCGTGTCAA 57.228 30.769 0.00 0.00 40.97 3.18
541 542 8.771920 AACTGAAGTAATATGATCGTGTCAAA 57.228 30.769 0.00 0.00 40.97 2.69
542 543 8.771920 ACTGAAGTAATATGATCGTGTCAAAA 57.228 30.769 0.00 0.00 40.97 2.44
543 544 8.656849 ACTGAAGTAATATGATCGTGTCAAAAC 58.343 33.333 0.00 0.00 40.97 2.43
544 545 7.970384 TGAAGTAATATGATCGTGTCAAAACC 58.030 34.615 0.00 0.00 40.97 3.27
545 546 7.822334 TGAAGTAATATGATCGTGTCAAAACCT 59.178 33.333 0.00 0.00 40.97 3.50
546 547 7.772332 AGTAATATGATCGTGTCAAAACCTC 57.228 36.000 0.00 0.00 40.97 3.85
547 548 6.761714 AGTAATATGATCGTGTCAAAACCTCC 59.238 38.462 0.00 0.00 40.97 4.30
548 549 3.703001 ATGATCGTGTCAAAACCTCCT 57.297 42.857 0.00 0.00 40.97 3.69
549 550 4.819105 ATGATCGTGTCAAAACCTCCTA 57.181 40.909 0.00 0.00 40.97 2.94
550 551 4.188247 TGATCGTGTCAAAACCTCCTAG 57.812 45.455 0.00 0.00 32.78 3.02
551 552 3.576982 TGATCGTGTCAAAACCTCCTAGT 59.423 43.478 0.00 0.00 32.78 2.57
631 632 2.126888 CGATGGCGTGCACAAACC 60.127 61.111 18.64 15.13 0.00 3.27
632 633 2.902419 CGATGGCGTGCACAAACCA 61.902 57.895 21.46 21.46 36.43 3.67
649 650 1.690283 CCAATCGTGCACTCGCTGAG 61.690 60.000 16.19 0.00 39.64 3.35
651 652 0.734253 AATCGTGCACTCGCTGAGTC 60.734 55.000 16.19 5.25 41.37 3.36
683 684 3.338674 TTGCTCGCACGCAATGAA 58.661 50.000 5.62 0.00 44.30 2.57
690 691 0.041400 CGCACGCAATGAACTGTTCA 60.041 50.000 23.94 23.94 45.01 3.18
691 692 1.398595 GCACGCAATGAACTGTTCAC 58.601 50.000 24.17 11.71 43.48 3.18
692 693 1.925946 GCACGCAATGAACTGTTCACC 60.926 52.381 24.17 14.49 43.48 4.02
693 694 1.333308 CACGCAATGAACTGTTCACCA 59.667 47.619 24.17 4.13 43.48 4.17
700 701 0.861837 GAACTGTTCACCAGACAGCG 59.138 55.000 15.34 0.00 44.49 5.18
750 758 3.662195 CGCACGTACGCAAGATAACAAAA 60.662 43.478 16.72 0.00 43.62 2.44
751 759 3.838550 GCACGTACGCAAGATAACAAAAG 59.161 43.478 16.72 0.00 43.62 2.27
752 760 3.838550 CACGTACGCAAGATAACAAAAGC 59.161 43.478 16.72 0.00 43.62 3.51
758 766 3.244976 GCAAGATAACAAAAGCACGCAT 58.755 40.909 0.00 0.00 0.00 4.73
764 772 1.081906 CAAAAGCACGCATGTCGCT 60.082 52.632 9.04 4.88 43.23 4.93
768 776 0.385974 AAGCACGCATGTCGCTTTTC 60.386 50.000 11.17 0.00 43.23 2.29
770 778 1.573932 CACGCATGTCGCTTTTCCA 59.426 52.632 9.04 0.00 43.23 3.53
776 784 2.352617 GCATGTCGCTTTTCCAATCCAA 60.353 45.455 0.00 0.00 37.77 3.53
782 790 1.344114 GCTTTTCCAATCCAACCAGCA 59.656 47.619 0.00 0.00 0.00 4.41
851 886 2.047844 CACCTCCACGTGCTCCTG 60.048 66.667 10.91 0.00 0.00 3.86
873 910 4.741239 TCCTCCAGCCCCCACTCC 62.741 72.222 0.00 0.00 0.00 3.85
875 912 3.721706 CTCCAGCCCCCACTCCAC 61.722 72.222 0.00 0.00 0.00 4.02
882 919 3.182263 CCCCACTCCACCCCACAA 61.182 66.667 0.00 0.00 0.00 3.33
892 929 3.953775 CCCCACAACCCTCGTGCT 61.954 66.667 0.00 0.00 32.85 4.40
913 950 4.803426 CCGCCCTCACTCGCTCAC 62.803 72.222 0.00 0.00 0.00 3.51
914 951 4.056125 CGCCCTCACTCGCTCACA 62.056 66.667 0.00 0.00 0.00 3.58
915 952 2.125753 GCCCTCACTCGCTCACAG 60.126 66.667 0.00 0.00 0.00 3.66
916 953 2.936912 GCCCTCACTCGCTCACAGT 61.937 63.158 0.00 0.00 0.00 3.55
1398 1439 4.077184 CCCTTCTGCGTGCCGGTA 62.077 66.667 1.90 0.00 0.00 4.02
1752 1793 1.139734 CACTGCGCCGTCTATGAGT 59.860 57.895 4.18 0.00 0.00 3.41
1758 1799 0.384309 CGCCGTCTATGAGTTGCCTA 59.616 55.000 0.00 0.00 0.00 3.93
1881 1922 1.006102 CAAGGACAAGTCGAGCGGT 60.006 57.895 0.00 0.00 0.00 5.68
1918 1959 1.252904 CGGTACTTTCTCCGGGGTGA 61.253 60.000 0.00 0.00 42.61 4.02
1930 1971 1.656652 CGGGGTGACTGCAAAGATAG 58.343 55.000 0.00 0.00 0.00 2.08
1959 2000 0.741221 GGAGTCTCGGTGTCAATGCC 60.741 60.000 0.00 0.00 0.00 4.40
2046 2087 2.184533 TCACCAATGGACTCGTATGGT 58.815 47.619 6.16 0.00 44.95 3.55
2057 2098 0.535335 TCGTATGGTGGTGAAGGCTC 59.465 55.000 0.00 0.00 0.00 4.70
2412 2453 2.509964 ACCGCCCCTTCTTGAATCTATT 59.490 45.455 0.00 0.00 0.00 1.73
2487 2528 2.054363 CTCGGCATATCTAACGTGCAG 58.946 52.381 0.00 0.00 40.53 4.41
2582 2623 5.958380 TGAAGGGAGAAGCTCTTATTAGTGA 59.042 40.000 0.00 0.00 37.47 3.41
2596 2637 2.933495 TAGTGATCTTGCTACGCGTT 57.067 45.000 20.78 0.00 0.00 4.84
2754 2795 0.666577 GTGGTGAAGAAGGACCGTCG 60.667 60.000 1.47 0.00 34.69 5.12
2835 2876 6.361433 TCTCTTTGTTTCACTTGGTATTCCA 58.639 36.000 0.00 0.00 42.66 3.53
2991 3034 3.522731 CTCAGGAGTCGGCGAGGG 61.523 72.222 11.20 0.00 0.00 4.30
3271 3317 2.095718 GCGCTTCCAGGTTTCTTTACAG 60.096 50.000 0.00 0.00 0.00 2.74
3443 3499 4.524328 AGAGCTTTGGTTGGAATAAGTTGG 59.476 41.667 0.00 0.00 0.00 3.77
3518 3578 9.532494 CCAATGGATGGTATATCTAATTTCCAA 57.468 33.333 0.00 0.00 44.85 3.53
3526 3586 7.719633 TGGTATATCTAATTTCCAAACTGCCTC 59.280 37.037 0.00 0.00 0.00 4.70
3532 3592 2.032528 CCAAACTGCCTCGAGCCA 59.967 61.111 6.99 0.00 42.71 4.75
3541 3601 1.092345 GCCTCGAGCCATTGTTCTCC 61.092 60.000 6.99 0.00 34.35 3.71
3551 3611 7.173218 TCGAGCCATTGTTCTCCATATAAATTC 59.827 37.037 0.00 0.00 0.00 2.17
3606 3666 3.370527 GCAGCCATTTACTACTCCAAGGA 60.371 47.826 0.00 0.00 0.00 3.36
3635 3695 2.297895 TGCGCCTAATCACCTGGGT 61.298 57.895 4.18 0.00 0.00 4.51
3644 3704 5.054477 CCTAATCACCTGGGTTATGTAACG 58.946 45.833 0.00 0.00 37.07 3.18
3670 3730 2.780065 TGATTCACTTGTGCAACTGC 57.220 45.000 0.00 0.00 38.04 4.40
3711 3771 2.429610 GTGCATCAGATGGAAGGCAATT 59.570 45.455 12.54 0.00 40.25 2.32
3720 3780 0.526211 GGAAGGCAATTTCGGTGACC 59.474 55.000 0.00 0.00 0.00 4.02
3814 3875 1.444933 TGGTCAACCCTTCTGTCCAT 58.555 50.000 0.00 0.00 34.29 3.41
3822 3883 0.179000 CCTTCTGTCCATTCCCTCCG 59.821 60.000 0.00 0.00 0.00 4.63
3826 3887 1.229368 TGTCCATTCCCTCCGTCCA 60.229 57.895 0.00 0.00 0.00 4.02
3828 3889 1.080354 TCCATTCCCTCCGTCCAGT 59.920 57.895 0.00 0.00 0.00 4.00
3866 3927 9.844257 TCATTTTATTTTGGGTCAAAGTTTGAT 57.156 25.926 20.72 6.25 42.47 2.57
4096 4242 0.712775 CGCTGCACTTCTCTCTTTCG 59.287 55.000 0.00 0.00 0.00 3.46
4099 4245 1.725706 CTGCACTTCTCTCTTTCGCTG 59.274 52.381 0.00 0.00 0.00 5.18
4192 4338 0.531090 CAATTGGCATTGGCATCCCG 60.531 55.000 14.21 0.00 43.71 5.14
4221 4367 1.005340 GCTTCTCATTGCGAGTCCAG 58.995 55.000 0.00 0.00 42.88 3.86
4289 4436 3.195661 CGCCTGACCCTTGTTTCTATAC 58.804 50.000 0.00 0.00 0.00 1.47
4318 4466 5.356882 TCTTTTATGCGTTCACTGAAAGG 57.643 39.130 6.81 0.00 39.30 3.11
4368 4516 7.615365 TGTCATTATTTCTTTCCCTACATTGCT 59.385 33.333 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.170187 CACAGGAGAGGGGAGAAATCTG 59.830 54.545 0.00 0.00 0.00 2.90
2 3 2.472029 TCACAGGAGAGGGGAGAAATC 58.528 52.381 0.00 0.00 0.00 2.17
3 4 2.649742 TCACAGGAGAGGGGAGAAAT 57.350 50.000 0.00 0.00 0.00 2.17
4 5 2.158158 TCTTCACAGGAGAGGGGAGAAA 60.158 50.000 0.00 0.00 0.00 2.52
6 7 1.084866 TCTTCACAGGAGAGGGGAGA 58.915 55.000 0.00 0.00 0.00 3.71
9 10 0.612174 TCGTCTTCACAGGAGAGGGG 60.612 60.000 0.00 0.00 0.00 4.79
10 11 1.203523 CTTCGTCTTCACAGGAGAGGG 59.796 57.143 0.00 0.00 0.00 4.30
11 12 1.203523 CCTTCGTCTTCACAGGAGAGG 59.796 57.143 0.00 0.00 0.00 3.69
12 13 1.403514 GCCTTCGTCTTCACAGGAGAG 60.404 57.143 0.00 0.00 0.00 3.20
14 15 0.734253 CGCCTTCGTCTTCACAGGAG 60.734 60.000 0.00 0.00 0.00 3.69
15 16 1.176619 TCGCCTTCGTCTTCACAGGA 61.177 55.000 0.00 0.00 36.96 3.86
16 17 0.734253 CTCGCCTTCGTCTTCACAGG 60.734 60.000 0.00 0.00 36.96 4.00
17 18 1.347817 GCTCGCCTTCGTCTTCACAG 61.348 60.000 0.00 0.00 36.96 3.66
18 19 1.372997 GCTCGCCTTCGTCTTCACA 60.373 57.895 0.00 0.00 36.96 3.58
19 20 0.944311 TTGCTCGCCTTCGTCTTCAC 60.944 55.000 0.00 0.00 36.96 3.18
20 21 0.249699 TTTGCTCGCCTTCGTCTTCA 60.250 50.000 0.00 0.00 36.96 3.02
21 22 0.865769 TTTTGCTCGCCTTCGTCTTC 59.134 50.000 0.00 0.00 36.96 2.87
22 23 0.586802 GTTTTGCTCGCCTTCGTCTT 59.413 50.000 0.00 0.00 36.96 3.01
23 24 1.228657 GGTTTTGCTCGCCTTCGTCT 61.229 55.000 0.00 0.00 36.96 4.18
24 25 1.206831 GGTTTTGCTCGCCTTCGTC 59.793 57.895 0.00 0.00 36.96 4.20
25 26 0.034337 TAGGTTTTGCTCGCCTTCGT 59.966 50.000 0.00 0.00 36.96 3.85
26 27 0.721718 CTAGGTTTTGCTCGCCTTCG 59.278 55.000 0.00 0.00 34.07 3.79
27 28 1.087501 CCTAGGTTTTGCTCGCCTTC 58.912 55.000 0.00 0.00 34.07 3.46
28 29 0.960861 GCCTAGGTTTTGCTCGCCTT 60.961 55.000 11.31 0.00 34.07 4.35
29 30 1.377333 GCCTAGGTTTTGCTCGCCT 60.377 57.895 11.31 0.00 36.47 5.52
30 31 2.407428 GGCCTAGGTTTTGCTCGCC 61.407 63.158 11.31 0.00 0.00 5.54
31 32 2.750888 CGGCCTAGGTTTTGCTCGC 61.751 63.158 11.31 0.00 0.00 5.03
32 33 2.750888 GCGGCCTAGGTTTTGCTCG 61.751 63.158 11.31 4.88 0.00 5.03
33 34 1.369839 GAGCGGCCTAGGTTTTGCTC 61.370 60.000 22.07 22.07 41.57 4.26
34 35 1.377333 GAGCGGCCTAGGTTTTGCT 60.377 57.895 11.31 14.05 34.96 3.91
35 36 2.407428 GGAGCGGCCTAGGTTTTGC 61.407 63.158 11.31 9.41 0.00 3.68
36 37 3.905249 GGAGCGGCCTAGGTTTTG 58.095 61.111 11.31 0.00 0.00 2.44
47 48 3.494336 CTTGCAGCGAAGGAGCGG 61.494 66.667 0.00 0.00 43.00 5.52
48 49 4.157958 GCTTGCAGCGAAGGAGCG 62.158 66.667 6.69 0.00 43.00 5.03
61 62 4.399395 TCCGGCAGAGGCAGCTTG 62.399 66.667 0.00 0.00 43.71 4.01
62 63 4.093291 CTCCGGCAGAGGCAGCTT 62.093 66.667 0.00 0.00 43.71 3.74
65 66 4.527583 GAGCTCCGGCAGAGGCAG 62.528 72.222 0.87 0.00 43.46 4.85
69 70 4.154347 GTGGGAGCTCCGGCAGAG 62.154 72.222 26.36 0.00 46.29 3.35
70 71 4.704103 AGTGGGAGCTCCGGCAGA 62.704 66.667 26.36 4.86 41.70 4.26
71 72 3.259633 AAAGTGGGAGCTCCGGCAG 62.260 63.158 26.36 0.00 41.70 4.85
72 73 3.249189 AAAGTGGGAGCTCCGGCA 61.249 61.111 26.36 16.76 41.70 5.69
73 74 2.436824 GAAAGTGGGAGCTCCGGC 60.437 66.667 26.36 20.14 38.76 6.13
74 75 2.125512 CGAAAGTGGGAGCTCCGG 60.126 66.667 26.36 0.00 38.76 5.14
75 76 2.125512 CCGAAAGTGGGAGCTCCG 60.126 66.667 26.36 12.61 38.76 4.63
76 77 2.436824 GCCGAAAGTGGGAGCTCC 60.437 66.667 25.59 25.59 0.00 4.70
77 78 2.815647 CGCCGAAAGTGGGAGCTC 60.816 66.667 4.71 4.71 0.00 4.09
78 79 3.311110 TCGCCGAAAGTGGGAGCT 61.311 61.111 0.00 0.00 0.00 4.09
79 80 3.119096 GTCGCCGAAAGTGGGAGC 61.119 66.667 0.00 0.00 0.00 4.70
80 81 2.809601 CGTCGCCGAAAGTGGGAG 60.810 66.667 0.00 0.00 35.63 4.30
119 120 2.044551 CCTTGGAGAAGGCCAGGC 60.045 66.667 5.01 1.26 42.60 4.85
126 127 0.108615 ACGACGATGCCTTGGAGAAG 60.109 55.000 0.00 0.00 0.00 2.85
127 128 0.389817 CACGACGATGCCTTGGAGAA 60.390 55.000 0.00 0.00 0.00 2.87
128 129 1.215382 CACGACGATGCCTTGGAGA 59.785 57.895 0.00 0.00 0.00 3.71
129 130 1.811266 CCACGACGATGCCTTGGAG 60.811 63.158 0.00 0.00 0.00 3.86
130 131 2.264480 CCACGACGATGCCTTGGA 59.736 61.111 0.00 0.00 0.00 3.53
131 132 3.499737 GCCACGACGATGCCTTGG 61.500 66.667 0.00 0.00 0.00 3.61
132 133 3.499737 GGCCACGACGATGCCTTG 61.500 66.667 20.09 0.24 42.01 3.61
171 172 4.704833 TTCTGCAGGCGTGGAGGC 62.705 66.667 24.85 3.85 42.30 4.70
172 173 2.435586 CTTCTGCAGGCGTGGAGG 60.436 66.667 24.85 8.67 42.30 4.30
173 174 2.249413 ATCCTTCTGCAGGCGTGGAG 62.249 60.000 20.45 20.45 43.55 3.86
174 175 2.293318 ATCCTTCTGCAGGCGTGGA 61.293 57.895 15.13 15.70 43.55 4.02
175 176 2.110967 CATCCTTCTGCAGGCGTGG 61.111 63.158 15.13 10.93 43.55 4.94
176 177 2.758089 GCATCCTTCTGCAGGCGTG 61.758 63.158 15.13 1.01 43.55 5.34
177 178 2.437359 GCATCCTTCTGCAGGCGT 60.437 61.111 15.13 0.00 43.55 5.68
178 179 3.570638 CGCATCCTTCTGCAGGCG 61.571 66.667 15.13 15.82 43.55 5.52
179 180 3.885521 GCGCATCCTTCTGCAGGC 61.886 66.667 15.13 7.11 43.55 4.85
180 181 3.570638 CGCGCATCCTTCTGCAGG 61.571 66.667 15.13 0.00 45.64 4.85
181 182 4.233635 GCGCGCATCCTTCTGCAG 62.234 66.667 29.10 7.63 42.40 4.41
198 199 4.697756 TGCTGGTTCCTTCGCGGG 62.698 66.667 6.13 0.00 0.00 6.13
199 200 3.121030 CTGCTGGTTCCTTCGCGG 61.121 66.667 6.13 0.00 0.00 6.46
200 201 2.048222 TCTGCTGGTTCCTTCGCG 60.048 61.111 0.00 0.00 0.00 5.87
201 202 2.394563 GCTCTGCTGGTTCCTTCGC 61.395 63.158 0.00 0.00 0.00 4.70
202 203 1.743252 GGCTCTGCTGGTTCCTTCG 60.743 63.158 0.00 0.00 0.00 3.79
203 204 1.377856 GGGCTCTGCTGGTTCCTTC 60.378 63.158 0.00 0.00 0.00 3.46
204 205 1.719063 TTGGGCTCTGCTGGTTCCTT 61.719 55.000 0.00 0.00 0.00 3.36
205 206 2.156098 TTGGGCTCTGCTGGTTCCT 61.156 57.895 0.00 0.00 0.00 3.36
206 207 1.973812 GTTGGGCTCTGCTGGTTCC 60.974 63.158 0.00 0.00 0.00 3.62
207 208 2.328099 CGTTGGGCTCTGCTGGTTC 61.328 63.158 0.00 0.00 0.00 3.62
208 209 2.129555 ATCGTTGGGCTCTGCTGGTT 62.130 55.000 0.00 0.00 0.00 3.67
209 210 2.129555 AATCGTTGGGCTCTGCTGGT 62.130 55.000 0.00 0.00 0.00 4.00
210 211 1.372087 GAATCGTTGGGCTCTGCTGG 61.372 60.000 0.00 0.00 0.00 4.85
211 212 1.699656 CGAATCGTTGGGCTCTGCTG 61.700 60.000 0.00 0.00 0.00 4.41
212 213 1.448540 CGAATCGTTGGGCTCTGCT 60.449 57.895 0.00 0.00 0.00 4.24
213 214 2.464459 CCGAATCGTTGGGCTCTGC 61.464 63.158 0.82 0.00 0.00 4.26
214 215 0.807667 CTCCGAATCGTTGGGCTCTG 60.808 60.000 0.82 0.00 0.00 3.35
215 216 0.970937 TCTCCGAATCGTTGGGCTCT 60.971 55.000 0.82 0.00 0.00 4.09
216 217 0.528684 CTCTCCGAATCGTTGGGCTC 60.529 60.000 0.82 0.00 0.00 4.70
217 218 0.970937 TCTCTCCGAATCGTTGGGCT 60.971 55.000 0.82 0.00 0.00 5.19
218 219 0.806492 GTCTCTCCGAATCGTTGGGC 60.806 60.000 0.82 0.00 0.00 5.36
219 220 0.179108 GGTCTCTCCGAATCGTTGGG 60.179 60.000 0.82 0.00 0.00 4.12
220 221 0.530744 TGGTCTCTCCGAATCGTTGG 59.469 55.000 0.82 0.00 39.52 3.77
221 222 2.094700 TCTTGGTCTCTCCGAATCGTTG 60.095 50.000 0.82 0.00 39.52 4.10
222 223 2.094649 GTCTTGGTCTCTCCGAATCGTT 60.095 50.000 0.82 0.00 39.52 3.85
223 224 1.473278 GTCTTGGTCTCTCCGAATCGT 59.527 52.381 0.82 0.00 39.52 3.73
224 225 1.202313 GGTCTTGGTCTCTCCGAATCG 60.202 57.143 0.00 0.00 39.52 3.34
225 226 1.202313 CGGTCTTGGTCTCTCCGAATC 60.202 57.143 0.00 0.00 43.22 2.52
226 227 0.818296 CGGTCTTGGTCTCTCCGAAT 59.182 55.000 0.00 0.00 43.22 3.34
227 228 1.248785 CCGGTCTTGGTCTCTCCGAA 61.249 60.000 0.00 0.00 43.22 4.30
228 229 1.677966 CCGGTCTTGGTCTCTCCGA 60.678 63.158 0.00 0.00 43.22 4.55
229 230 1.677966 TCCGGTCTTGGTCTCTCCG 60.678 63.158 0.00 0.00 39.52 4.63
230 231 0.898789 TGTCCGGTCTTGGTCTCTCC 60.899 60.000 0.00 0.00 0.00 3.71
231 232 0.244178 GTGTCCGGTCTTGGTCTCTC 59.756 60.000 0.00 0.00 0.00 3.20
232 233 1.186267 GGTGTCCGGTCTTGGTCTCT 61.186 60.000 0.00 0.00 0.00 3.10
233 234 1.292541 GGTGTCCGGTCTTGGTCTC 59.707 63.158 0.00 0.00 0.00 3.36
234 235 1.458777 TGGTGTCCGGTCTTGGTCT 60.459 57.895 0.00 0.00 0.00 3.85
235 236 1.301479 GTGGTGTCCGGTCTTGGTC 60.301 63.158 0.00 0.00 0.00 4.02
236 237 1.764854 AGTGGTGTCCGGTCTTGGT 60.765 57.895 0.00 0.00 0.00 3.67
237 238 1.301716 CAGTGGTGTCCGGTCTTGG 60.302 63.158 0.00 0.00 0.00 3.61
238 239 0.600255 GTCAGTGGTGTCCGGTCTTG 60.600 60.000 0.00 0.00 0.00 3.02
239 240 0.759436 AGTCAGTGGTGTCCGGTCTT 60.759 55.000 0.00 0.00 0.00 3.01
240 241 1.152525 AGTCAGTGGTGTCCGGTCT 60.153 57.895 0.00 0.00 0.00 3.85
241 242 1.006102 CAGTCAGTGGTGTCCGGTC 60.006 63.158 0.00 0.00 0.00 4.79
242 243 3.138625 CAGTCAGTGGTGTCCGGT 58.861 61.111 0.00 0.00 0.00 5.28
243 244 2.357517 GCAGTCAGTGGTGTCCGG 60.358 66.667 0.00 0.00 0.00 5.14
244 245 1.227527 TTGCAGTCAGTGGTGTCCG 60.228 57.895 0.00 0.00 0.00 4.79
245 246 1.166531 GGTTGCAGTCAGTGGTGTCC 61.167 60.000 0.00 0.00 0.00 4.02
246 247 0.179045 AGGTTGCAGTCAGTGGTGTC 60.179 55.000 0.00 0.00 0.00 3.67
247 248 0.464373 CAGGTTGCAGTCAGTGGTGT 60.464 55.000 0.00 0.00 0.00 4.16
248 249 1.168407 CCAGGTTGCAGTCAGTGGTG 61.168 60.000 0.00 0.00 0.00 4.17
249 250 1.149174 CCAGGTTGCAGTCAGTGGT 59.851 57.895 0.00 0.00 0.00 4.16
250 251 0.604780 CTCCAGGTTGCAGTCAGTGG 60.605 60.000 0.00 0.00 0.00 4.00
251 252 0.604780 CCTCCAGGTTGCAGTCAGTG 60.605 60.000 0.00 0.00 0.00 3.66
252 253 0.764369 TCCTCCAGGTTGCAGTCAGT 60.764 55.000 0.00 0.00 36.34 3.41
253 254 0.036577 CTCCTCCAGGTTGCAGTCAG 60.037 60.000 0.00 0.00 36.34 3.51
254 255 0.471780 TCTCCTCCAGGTTGCAGTCA 60.472 55.000 0.00 0.00 36.34 3.41
255 256 0.908198 ATCTCCTCCAGGTTGCAGTC 59.092 55.000 0.00 0.00 36.34 3.51
256 257 0.908198 GATCTCCTCCAGGTTGCAGT 59.092 55.000 0.00 0.00 36.34 4.40
257 258 0.179089 CGATCTCCTCCAGGTTGCAG 60.179 60.000 0.00 0.00 36.34 4.41
258 259 0.614697 TCGATCTCCTCCAGGTTGCA 60.615 55.000 0.00 0.00 36.34 4.08
259 260 0.537188 TTCGATCTCCTCCAGGTTGC 59.463 55.000 0.00 0.00 36.34 4.17
260 261 1.550524 TGTTCGATCTCCTCCAGGTTG 59.449 52.381 0.00 0.00 36.34 3.77
261 262 1.550976 GTGTTCGATCTCCTCCAGGTT 59.449 52.381 0.00 0.00 36.34 3.50
262 263 1.187087 GTGTTCGATCTCCTCCAGGT 58.813 55.000 0.00 0.00 36.34 4.00
263 264 1.135915 CTGTGTTCGATCTCCTCCAGG 59.864 57.143 0.00 0.00 0.00 4.45
264 265 1.135915 CCTGTGTTCGATCTCCTCCAG 59.864 57.143 0.00 0.00 0.00 3.86
265 266 1.186200 CCTGTGTTCGATCTCCTCCA 58.814 55.000 0.00 0.00 0.00 3.86
266 267 0.179097 GCCTGTGTTCGATCTCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
267 268 0.820871 AGCCTGTGTTCGATCTCCTC 59.179 55.000 0.00 0.00 0.00 3.71
268 269 0.534412 CAGCCTGTGTTCGATCTCCT 59.466 55.000 0.00 0.00 0.00 3.69
269 270 0.460987 CCAGCCTGTGTTCGATCTCC 60.461 60.000 0.00 0.00 0.00 3.71
270 271 0.532573 TCCAGCCTGTGTTCGATCTC 59.467 55.000 0.00 0.00 0.00 2.75
271 272 0.534412 CTCCAGCCTGTGTTCGATCT 59.466 55.000 0.00 0.00 0.00 2.75
272 273 0.460987 CCTCCAGCCTGTGTTCGATC 60.461 60.000 0.00 0.00 0.00 3.69
273 274 1.599047 CCTCCAGCCTGTGTTCGAT 59.401 57.895 0.00 0.00 0.00 3.59
274 275 2.583441 CCCTCCAGCCTGTGTTCGA 61.583 63.158 0.00 0.00 0.00 3.71
275 276 2.046892 CCCTCCAGCCTGTGTTCG 60.047 66.667 0.00 0.00 0.00 3.95
276 277 2.352805 CCCCTCCAGCCTGTGTTC 59.647 66.667 0.00 0.00 0.00 3.18
277 278 2.450502 ACCCCTCCAGCCTGTGTT 60.451 61.111 0.00 0.00 0.00 3.32
278 279 2.930562 GACCCCTCCAGCCTGTGT 60.931 66.667 0.00 0.00 0.00 3.72
279 280 2.067932 TTTGACCCCTCCAGCCTGTG 62.068 60.000 0.00 0.00 0.00 3.66
280 281 1.774217 TTTGACCCCTCCAGCCTGT 60.774 57.895 0.00 0.00 0.00 4.00
281 282 1.001641 CTTTGACCCCTCCAGCCTG 60.002 63.158 0.00 0.00 0.00 4.85
282 283 2.234296 CCTTTGACCCCTCCAGCCT 61.234 63.158 0.00 0.00 0.00 4.58
283 284 2.356667 CCTTTGACCCCTCCAGCC 59.643 66.667 0.00 0.00 0.00 4.85
284 285 2.361737 GCCTTTGACCCCTCCAGC 60.362 66.667 0.00 0.00 0.00 4.85
285 286 1.867595 ATGGCCTTTGACCCCTCCAG 61.868 60.000 3.32 0.00 0.00 3.86
286 287 1.856873 ATGGCCTTTGACCCCTCCA 60.857 57.895 3.32 0.00 0.00 3.86
287 288 1.380380 CATGGCCTTTGACCCCTCC 60.380 63.158 3.32 0.00 0.00 4.30
288 289 0.259938 ATCATGGCCTTTGACCCCTC 59.740 55.000 3.32 0.00 0.00 4.30
289 290 0.259938 GATCATGGCCTTTGACCCCT 59.740 55.000 3.32 0.00 0.00 4.79
290 291 1.103398 CGATCATGGCCTTTGACCCC 61.103 60.000 3.32 0.37 0.00 4.95
291 292 0.107214 TCGATCATGGCCTTTGACCC 60.107 55.000 3.32 2.75 0.00 4.46
292 293 1.303309 CTCGATCATGGCCTTTGACC 58.697 55.000 3.32 0.00 0.00 4.02
293 294 1.303309 CCTCGATCATGGCCTTTGAC 58.697 55.000 3.32 2.11 0.00 3.18
294 295 0.464373 GCCTCGATCATGGCCTTTGA 60.464 55.000 13.31 7.96 43.11 2.69
295 296 2.028130 GCCTCGATCATGGCCTTTG 58.972 57.895 13.31 1.47 43.11 2.77
296 297 4.567318 GCCTCGATCATGGCCTTT 57.433 55.556 13.31 0.00 43.11 3.11
301 302 1.027357 CCCTTTTGCCTCGATCATGG 58.973 55.000 0.00 0.00 0.00 3.66
302 303 1.672881 GACCCTTTTGCCTCGATCATG 59.327 52.381 0.00 0.00 0.00 3.07
303 304 1.743772 CGACCCTTTTGCCTCGATCAT 60.744 52.381 0.00 0.00 0.00 2.45
304 305 0.391130 CGACCCTTTTGCCTCGATCA 60.391 55.000 0.00 0.00 0.00 2.92
305 306 1.706287 GCGACCCTTTTGCCTCGATC 61.706 60.000 0.00 0.00 0.00 3.69
306 307 1.745489 GCGACCCTTTTGCCTCGAT 60.745 57.895 0.00 0.00 0.00 3.59
307 308 2.358247 GCGACCCTTTTGCCTCGA 60.358 61.111 0.00 0.00 0.00 4.04
308 309 3.788766 CGCGACCCTTTTGCCTCG 61.789 66.667 0.00 0.00 0.00 4.63
309 310 3.431725 CCGCGACCCTTTTGCCTC 61.432 66.667 8.23 0.00 0.00 4.70
326 327 4.695791 AACCACTCCCCCTCCCCC 62.696 72.222 0.00 0.00 0.00 5.40
327 328 3.339093 CAACCACTCCCCCTCCCC 61.339 72.222 0.00 0.00 0.00 4.81
328 329 4.048470 GCAACCACTCCCCCTCCC 62.048 72.222 0.00 0.00 0.00 4.30
329 330 4.048470 GGCAACCACTCCCCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
330 331 4.410400 CGGCAACCACTCCCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
405 406 4.144727 TCTCTCCTCCCCCGCTCC 62.145 72.222 0.00 0.00 0.00 4.70
406 407 2.520741 CTCTCTCCTCCCCCGCTC 60.521 72.222 0.00 0.00 0.00 5.03
407 408 2.864770 GAACTCTCTCCTCCCCCGCT 62.865 65.000 0.00 0.00 0.00 5.52
408 409 2.364448 AACTCTCTCCTCCCCCGC 60.364 66.667 0.00 0.00 0.00 6.13
409 410 0.551879 TAGAACTCTCTCCTCCCCCG 59.448 60.000 0.00 0.00 32.70 5.73
410 411 2.492010 GGATAGAACTCTCTCCTCCCCC 60.492 59.091 4.33 0.00 36.59 5.40
411 412 2.178106 TGGATAGAACTCTCTCCTCCCC 59.822 54.545 11.28 0.00 39.29 4.81
412 413 3.117284 AGTGGATAGAACTCTCTCCTCCC 60.117 52.174 11.28 2.08 39.29 4.30
413 414 4.178956 AGTGGATAGAACTCTCTCCTCC 57.821 50.000 11.28 3.99 39.29 4.30
414 415 4.953579 ACAAGTGGATAGAACTCTCTCCTC 59.046 45.833 11.28 8.33 39.29 3.71
415 416 4.941713 ACAAGTGGATAGAACTCTCTCCT 58.058 43.478 11.28 0.00 39.29 3.69
416 417 5.669164 AACAAGTGGATAGAACTCTCTCC 57.331 43.478 4.56 4.56 39.08 3.71
417 418 6.930731 AGAAACAAGTGGATAGAACTCTCTC 58.069 40.000 0.00 0.00 32.70 3.20
418 419 6.495181 TGAGAAACAAGTGGATAGAACTCTCT 59.505 38.462 0.00 0.00 35.52 3.10
419 420 6.692486 TGAGAAACAAGTGGATAGAACTCTC 58.308 40.000 0.00 0.00 0.00 3.20
420 421 6.672266 TGAGAAACAAGTGGATAGAACTCT 57.328 37.500 0.00 0.00 0.00 3.24
434 435 1.172180 CGCCCCTGCTTGAGAAACAA 61.172 55.000 0.00 0.00 36.97 2.83
435 436 1.600636 CGCCCCTGCTTGAGAAACA 60.601 57.895 0.00 0.00 34.43 2.83
436 437 2.335712 CCGCCCCTGCTTGAGAAAC 61.336 63.158 0.00 0.00 34.43 2.78
437 438 2.034066 CCGCCCCTGCTTGAGAAA 59.966 61.111 0.00 0.00 34.43 2.52
438 439 2.927856 TCCGCCCCTGCTTGAGAA 60.928 61.111 0.00 0.00 34.43 2.87
439 440 3.706373 GTCCGCCCCTGCTTGAGA 61.706 66.667 0.00 0.00 34.43 3.27
440 441 4.785453 GGTCCGCCCCTGCTTGAG 62.785 72.222 0.00 0.00 34.43 3.02
441 442 3.916438 TAGGTCCGCCCCTGCTTGA 62.916 63.158 1.64 0.00 35.97 3.02
442 443 3.391665 CTAGGTCCGCCCCTGCTTG 62.392 68.421 1.64 0.00 35.97 4.01
443 444 3.083997 CTAGGTCCGCCCCTGCTT 61.084 66.667 1.64 0.00 35.97 3.91
446 447 2.122813 ATCCTAGGTCCGCCCCTG 60.123 66.667 9.08 0.00 35.97 4.45
447 448 1.072505 TAGATCCTAGGTCCGCCCCT 61.073 60.000 9.08 0.00 38.70 4.79
448 449 0.178941 TTAGATCCTAGGTCCGCCCC 60.179 60.000 9.08 0.00 34.57 5.80
449 450 1.939980 ATTAGATCCTAGGTCCGCCC 58.060 55.000 9.08 0.00 34.57 6.13
450 451 2.897969 TGAATTAGATCCTAGGTCCGCC 59.102 50.000 9.08 0.00 0.00 6.13
451 452 3.612004 CGTGAATTAGATCCTAGGTCCGC 60.612 52.174 9.08 0.00 0.00 5.54
452 453 3.568853 ACGTGAATTAGATCCTAGGTCCG 59.431 47.826 9.08 5.80 0.00 4.79
453 454 4.583489 TCACGTGAATTAGATCCTAGGTCC 59.417 45.833 17.62 1.73 0.00 4.46
454 455 5.278561 CCTCACGTGAATTAGATCCTAGGTC 60.279 48.000 20.49 5.97 0.00 3.85
455 456 4.585162 CCTCACGTGAATTAGATCCTAGGT 59.415 45.833 20.49 0.00 0.00 3.08
456 457 4.585162 ACCTCACGTGAATTAGATCCTAGG 59.415 45.833 20.49 14.29 0.00 3.02
457 458 5.776173 ACCTCACGTGAATTAGATCCTAG 57.224 43.478 20.49 2.88 0.00 3.02
458 459 6.598503 TCTACCTCACGTGAATTAGATCCTA 58.401 40.000 22.90 8.60 0.00 2.94
459 460 5.446860 TCTACCTCACGTGAATTAGATCCT 58.553 41.667 22.90 3.46 0.00 3.24
460 461 5.769484 TCTACCTCACGTGAATTAGATCC 57.231 43.478 22.90 0.00 0.00 3.36
461 462 6.797454 ACTTCTACCTCACGTGAATTAGATC 58.203 40.000 25.43 0.00 0.00 2.75
462 463 6.777213 ACTTCTACCTCACGTGAATTAGAT 57.223 37.500 25.43 15.25 0.00 1.98
463 464 6.387465 CAACTTCTACCTCACGTGAATTAGA 58.613 40.000 22.90 22.90 0.00 2.10
464 465 5.062308 GCAACTTCTACCTCACGTGAATTAG 59.938 44.000 20.49 20.23 0.00 1.73
465 466 4.927425 GCAACTTCTACCTCACGTGAATTA 59.073 41.667 20.49 12.07 0.00 1.40
466 467 3.746492 GCAACTTCTACCTCACGTGAATT 59.254 43.478 20.49 11.54 0.00 2.17
467 468 3.326747 GCAACTTCTACCTCACGTGAAT 58.673 45.455 20.49 13.12 0.00 2.57
468 469 2.750948 GCAACTTCTACCTCACGTGAA 58.249 47.619 20.49 3.77 0.00 3.18
469 470 1.335597 CGCAACTTCTACCTCACGTGA 60.336 52.381 18.88 18.88 0.00 4.35
470 471 1.060713 CGCAACTTCTACCTCACGTG 58.939 55.000 9.94 9.94 0.00 4.49
471 472 0.038526 CCGCAACTTCTACCTCACGT 60.039 55.000 0.00 0.00 0.00 4.49
472 473 0.242825 TCCGCAACTTCTACCTCACG 59.757 55.000 0.00 0.00 0.00 4.35
473 474 1.544691 TCTCCGCAACTTCTACCTCAC 59.455 52.381 0.00 0.00 0.00 3.51
474 475 1.919240 TCTCCGCAACTTCTACCTCA 58.081 50.000 0.00 0.00 0.00 3.86
475 476 3.314541 TTTCTCCGCAACTTCTACCTC 57.685 47.619 0.00 0.00 0.00 3.85
476 477 3.983044 ATTTCTCCGCAACTTCTACCT 57.017 42.857 0.00 0.00 0.00 3.08
477 478 4.933400 TGTAATTTCTCCGCAACTTCTACC 59.067 41.667 0.00 0.00 0.00 3.18
478 479 5.407387 TGTGTAATTTCTCCGCAACTTCTAC 59.593 40.000 0.00 0.00 0.00 2.59
479 480 5.543714 TGTGTAATTTCTCCGCAACTTCTA 58.456 37.500 0.00 0.00 0.00 2.10
480 481 4.385825 TGTGTAATTTCTCCGCAACTTCT 58.614 39.130 0.00 0.00 0.00 2.85
481 482 4.742438 TGTGTAATTTCTCCGCAACTTC 57.258 40.909 0.00 0.00 0.00 3.01
482 483 5.508200 TTTGTGTAATTTCTCCGCAACTT 57.492 34.783 0.00 0.00 0.00 2.66
483 484 5.067283 ACTTTTGTGTAATTTCTCCGCAACT 59.933 36.000 0.00 0.00 0.00 3.16
484 485 5.278604 ACTTTTGTGTAATTTCTCCGCAAC 58.721 37.500 0.00 0.00 0.00 4.17
485 486 5.508200 ACTTTTGTGTAATTTCTCCGCAA 57.492 34.783 0.00 0.00 0.00 4.85
486 487 6.621316 TTACTTTTGTGTAATTTCTCCGCA 57.379 33.333 0.00 0.00 0.00 5.69
487 488 7.428472 GCTATTACTTTTGTGTAATTTCTCCGC 59.572 37.037 5.42 0.00 41.60 5.54
488 489 8.447833 TGCTATTACTTTTGTGTAATTTCTCCG 58.552 33.333 5.42 0.00 41.60 4.63
497 498 9.944663 CTTCAGTTTTGCTATTACTTTTGTGTA 57.055 29.630 0.00 0.00 0.00 2.90
498 499 8.466798 ACTTCAGTTTTGCTATTACTTTTGTGT 58.533 29.630 0.00 0.00 0.00 3.72
499 500 8.856490 ACTTCAGTTTTGCTATTACTTTTGTG 57.144 30.769 0.00 0.00 0.00 3.33
509 510 9.547753 ACGATCATATTACTTCAGTTTTGCTAT 57.452 29.630 0.00 0.00 0.00 2.97
510 511 8.817100 CACGATCATATTACTTCAGTTTTGCTA 58.183 33.333 0.00 0.00 0.00 3.49
511 512 7.334421 ACACGATCATATTACTTCAGTTTTGCT 59.666 33.333 0.00 0.00 0.00 3.91
512 513 7.464358 ACACGATCATATTACTTCAGTTTTGC 58.536 34.615 0.00 0.00 0.00 3.68
513 514 8.655970 TGACACGATCATATTACTTCAGTTTTG 58.344 33.333 0.00 0.00 29.99 2.44
514 515 8.771920 TGACACGATCATATTACTTCAGTTTT 57.228 30.769 0.00 0.00 29.99 2.43
515 516 8.771920 TTGACACGATCATATTACTTCAGTTT 57.228 30.769 0.00 0.00 37.11 2.66
516 517 8.771920 TTTGACACGATCATATTACTTCAGTT 57.228 30.769 0.00 0.00 37.11 3.16
517 518 8.656849 GTTTTGACACGATCATATTACTTCAGT 58.343 33.333 0.00 0.00 37.11 3.41
518 519 8.116753 GGTTTTGACACGATCATATTACTTCAG 58.883 37.037 0.00 0.00 37.11 3.02
519 520 7.822334 AGGTTTTGACACGATCATATTACTTCA 59.178 33.333 0.00 0.00 37.11 3.02
520 521 8.197988 AGGTTTTGACACGATCATATTACTTC 57.802 34.615 0.00 0.00 37.11 3.01
521 522 7.280205 GGAGGTTTTGACACGATCATATTACTT 59.720 37.037 0.00 0.00 37.11 2.24
522 523 6.761714 GGAGGTTTTGACACGATCATATTACT 59.238 38.462 0.00 0.00 37.11 2.24
523 524 6.761714 AGGAGGTTTTGACACGATCATATTAC 59.238 38.462 0.00 0.00 37.11 1.89
524 525 6.884832 AGGAGGTTTTGACACGATCATATTA 58.115 36.000 0.00 0.00 37.11 0.98
525 526 5.745227 AGGAGGTTTTGACACGATCATATT 58.255 37.500 0.00 0.00 37.11 1.28
526 527 5.359194 AGGAGGTTTTGACACGATCATAT 57.641 39.130 0.00 0.00 37.11 1.78
527 528 4.819105 AGGAGGTTTTGACACGATCATA 57.181 40.909 0.00 0.00 37.11 2.15
528 529 3.703001 AGGAGGTTTTGACACGATCAT 57.297 42.857 0.00 0.00 37.11 2.45
529 530 3.576982 ACTAGGAGGTTTTGACACGATCA 59.423 43.478 0.00 0.00 34.65 2.92
530 531 4.189639 ACTAGGAGGTTTTGACACGATC 57.810 45.455 0.00 0.00 0.00 3.69
531 532 5.733620 TTACTAGGAGGTTTTGACACGAT 57.266 39.130 0.00 0.00 0.00 3.73
532 533 5.733620 ATTACTAGGAGGTTTTGACACGA 57.266 39.130 0.00 0.00 0.00 4.35
533 534 7.894376 TTTATTACTAGGAGGTTTTGACACG 57.106 36.000 0.00 0.00 0.00 4.49
534 535 9.668497 AGATTTATTACTAGGAGGTTTTGACAC 57.332 33.333 0.00 0.00 0.00 3.67
590 591 8.538701 TCGTATGAAAAAGGTTGGTATAGGTTA 58.461 33.333 0.00 0.00 0.00 2.85
592 593 6.949715 TCGTATGAAAAAGGTTGGTATAGGT 58.050 36.000 0.00 0.00 0.00 3.08
594 595 7.519970 GCCATCGTATGAAAAAGGTTGGTATAG 60.520 40.741 0.00 0.00 0.00 1.31
595 596 6.261381 GCCATCGTATGAAAAAGGTTGGTATA 59.739 38.462 0.00 0.00 0.00 1.47
596 597 5.067283 GCCATCGTATGAAAAAGGTTGGTAT 59.933 40.000 0.00 0.00 0.00 2.73
631 632 1.010935 ACTCAGCGAGTGCACGATTG 61.011 55.000 12.01 9.07 41.76 2.67
632 633 0.734253 GACTCAGCGAGTGCACGATT 60.734 55.000 12.01 0.00 43.53 3.34
640 641 2.556792 CGTGTCGACTCAGCGAGT 59.443 61.111 17.92 10.33 46.42 4.18
672 673 1.398595 GTGAACAGTTCATTGCGTGC 58.601 50.000 19.04 0.84 42.47 5.34
690 691 4.320456 CCACTGCCGCTGTCTGGT 62.320 66.667 0.00 0.00 0.00 4.00
692 693 4.694233 AGCCACTGCCGCTGTCTG 62.694 66.667 0.00 0.00 38.69 3.51
693 694 4.694233 CAGCCACTGCCGCTGTCT 62.694 66.667 0.00 0.00 46.97 3.41
700 701 3.446570 GTGATGCCAGCCACTGCC 61.447 66.667 0.00 0.00 38.69 4.85
732 740 3.838550 GTGCTTTTGTTATCTTGCGTACG 59.161 43.478 11.84 11.84 0.00 3.67
758 766 1.611491 GGTTGGATTGGAAAAGCGACA 59.389 47.619 0.00 0.00 0.00 4.35
764 772 4.494091 TTTTGCTGGTTGGATTGGAAAA 57.506 36.364 0.00 0.00 0.00 2.29
829 837 3.311110 GCACGTGGAGGTGGAGGA 61.311 66.667 18.88 0.00 38.36 3.71
873 910 2.281484 CACGAGGGTTGTGGGGTG 60.281 66.667 0.00 0.00 33.69 4.61
874 911 4.265056 GCACGAGGGTTGTGGGGT 62.265 66.667 0.00 0.00 37.80 4.95
875 912 3.953775 AGCACGAGGGTTGTGGGG 61.954 66.667 0.00 0.00 37.80 4.96
876 913 2.669569 CAGCACGAGGGTTGTGGG 60.670 66.667 0.00 0.00 37.80 4.61
877 914 3.357079 GCAGCACGAGGGTTGTGG 61.357 66.667 0.00 0.00 37.80 4.17
898 935 2.125753 CTGTGAGCGAGTGAGGGC 60.126 66.667 0.00 0.00 0.00 5.19
902 939 0.744281 TTGTGACTGTGAGCGAGTGA 59.256 50.000 0.00 0.00 0.00 3.41
913 950 1.263217 GTGCGGGTTTACTTGTGACTG 59.737 52.381 0.00 0.00 0.00 3.51
914 951 1.134340 TGTGCGGGTTTACTTGTGACT 60.134 47.619 0.00 0.00 0.00 3.41
915 952 1.263217 CTGTGCGGGTTTACTTGTGAC 59.737 52.381 0.00 0.00 0.00 3.67
916 953 1.134340 ACTGTGCGGGTTTACTTGTGA 60.134 47.619 0.00 0.00 0.00 3.58
1666 1707 2.364632 CTTGGCATACGGATCCAACAA 58.635 47.619 13.41 6.14 35.17 2.83
1732 1773 0.867753 CTCATAGACGGCGCAGTGAC 60.868 60.000 20.30 4.34 0.00 3.67
1752 1793 4.954933 GCCAACGATCCTAGGCAA 57.045 55.556 2.96 0.00 46.26 4.52
1772 1813 1.339631 CCCAATTGTAGCTCGGTGGAA 60.340 52.381 4.43 0.00 0.00 3.53
1806 1847 0.685131 TCTCCAATGGCAAGCATGGG 60.685 55.000 10.73 0.00 33.66 4.00
1810 1851 0.251474 AGCTTCTCCAATGGCAAGCA 60.251 50.000 26.85 0.39 39.34 3.91
1881 1922 1.971167 GGCAACATTGTCCGGCAGA 60.971 57.895 0.00 0.00 0.00 4.26
1918 1959 5.046304 TCCTAAAGTGCTCTATCTTTGCAGT 60.046 40.000 0.00 0.00 41.47 4.40
1930 1971 1.819903 ACCGAGACTCCTAAAGTGCTC 59.180 52.381 0.00 0.00 38.74 4.26
1959 2000 0.738389 ACACTGGTTCCAGCAAAACG 59.262 50.000 17.55 3.81 37.57 3.60
2046 2087 1.708993 AAGCACTGGAGCCTTCACCA 61.709 55.000 0.00 0.00 34.23 4.17
2057 2098 1.284657 CGTGATAGCTGAAGCACTGG 58.715 55.000 4.90 0.00 45.16 4.00
2412 2453 0.179040 AAAGAACCGGGTCGAAAGCA 60.179 50.000 15.29 0.00 0.00 3.91
2487 2528 2.879103 TCCAGTGAGGGAATGGAAAC 57.121 50.000 0.00 0.00 40.13 2.78
2596 2637 2.745037 GTCCCCGCTACCACACAA 59.255 61.111 0.00 0.00 0.00 3.33
2754 2795 3.827302 TCTGAAGAACTACACTGTCCTCC 59.173 47.826 0.00 0.00 0.00 4.30
2835 2876 4.868172 TTCATCTCCCATGTTCAGGATT 57.132 40.909 0.00 0.00 0.00 3.01
2836 2877 4.726583 CATTCATCTCCCATGTTCAGGAT 58.273 43.478 0.00 0.00 0.00 3.24
2991 3034 7.392953 AGGAATTCTCTTCTCTGAAAAATGTCC 59.607 37.037 5.23 0.00 0.00 4.02
3271 3317 4.799428 GTGTACTTTCAGATTAGACTCGGC 59.201 45.833 0.00 0.00 0.00 5.54
3407 3463 3.438434 CCAAAGCTCTGAAAGTAGGAAGC 59.562 47.826 0.00 0.00 33.76 3.86
3443 3499 5.317733 ACATTCTCAGCTACAGTACAGAC 57.682 43.478 0.00 0.00 0.00 3.51
3511 3570 1.168714 GCTCGAGGCAGTTTGGAAAT 58.831 50.000 15.58 0.00 41.35 2.17
3526 3586 6.808008 ATTTATATGGAGAACAATGGCTCG 57.192 37.500 0.00 0.00 31.95 5.03
3532 3592 9.927081 ACTTGGAGAATTTATATGGAGAACAAT 57.073 29.630 0.00 0.00 0.00 2.71
3551 3611 4.580580 ACTGGTTAGCTTCAAAACTTGGAG 59.419 41.667 0.00 0.00 39.38 3.86
3595 3655 1.134965 CGGAGTGCTTCCTTGGAGTAG 60.135 57.143 6.32 0.00 44.41 2.57
3635 3695 7.915293 AGTGAATCAAATGGTCGTTACATAA 57.085 32.000 0.00 0.00 0.00 1.90
3644 3704 4.241590 TGCACAAGTGAATCAAATGGTC 57.758 40.909 4.04 0.00 0.00 4.02
3670 3730 0.725686 CATCTTCTCAGGTGCTTGCG 59.274 55.000 0.00 0.00 0.00 4.85
3711 3771 2.037251 CAGAAGGAGAAAGGTCACCGAA 59.963 50.000 0.00 0.00 39.36 4.30
3720 3780 3.911661 CAAAGGTGCAGAAGGAGAAAG 57.088 47.619 0.00 0.00 0.00 2.62
3814 3875 4.533311 ACTAATAAAACTGGACGGAGGGAA 59.467 41.667 0.00 0.00 0.00 3.97
4001 4147 5.188751 AGTCCCCTTGTGTTTTGAATCAAAA 59.811 36.000 16.28 16.28 40.41 2.44
4014 4160 4.018779 TCCAGGTTTATTAGTCCCCTTGTG 60.019 45.833 0.00 0.00 0.00 3.33
4083 4229 1.615883 TCAGCAGCGAAAGAGAGAAGT 59.384 47.619 0.00 0.00 0.00 3.01
4096 4242 1.001860 AGAGAGACAAAGGTCAGCAGC 59.998 52.381 0.00 0.00 46.80 5.25
4099 4245 3.181470 GGGATAGAGAGACAAAGGTCAGC 60.181 52.174 0.00 0.00 46.80 4.26
4136 4282 1.276705 TGTGTGTATGCCACCGTACAT 59.723 47.619 0.00 0.00 43.31 2.29
4221 4367 1.066430 TCATCACCACCGTTAAGAGGC 60.066 52.381 0.00 0.00 0.00 4.70
4289 4436 5.796935 CAGTGAACGCATAAAAGAAATGGAG 59.203 40.000 0.00 0.00 0.00 3.86
4304 4452 3.127030 CCTAATTCCCTTTCAGTGAACGC 59.873 47.826 4.68 0.00 0.00 4.84
4318 4466 5.589050 ACCGTCAAAGATAAAGCCTAATTCC 59.411 40.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.