Multiple sequence alignment - TraesCS1A01G246600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G246600 chr1A 100.000 6036 0 0 1 6036 436441399 436435364 0.000000e+00 11147.0
1 TraesCS1A01G246600 chr1A 90.062 161 9 3 2521 2674 133726840 133726680 1.030000e-47 202.0
2 TraesCS1A01G246600 chr1A 81.818 121 20 2 267 386 50960964 50960845 3.850000e-17 100.0
3 TraesCS1A01G246600 chr1B 93.145 2874 133 34 686 3524 452760657 452757813 0.000000e+00 4157.0
4 TraesCS1A01G246600 chr1B 93.686 1663 79 13 3526 5180 452757776 452756132 0.000000e+00 2466.0
5 TraesCS1A01G246600 chr1B 89.139 267 16 8 686 942 452771239 452770976 2.710000e-83 320.0
6 TraesCS1A01G246600 chr1B 88.202 178 19 1 264 439 452760820 452760643 1.700000e-50 211.0
7 TraesCS1A01G246600 chr1B 88.024 167 20 0 267 433 452771399 452771233 1.330000e-46 198.0
8 TraesCS1A01G246600 chr1B 95.536 112 4 1 5926 6036 452755099 452754988 1.730000e-40 178.0
9 TraesCS1A01G246600 chr1B 87.342 158 10 4 119 266 452771665 452771508 8.040000e-39 172.0
10 TraesCS1A01G246600 chr1B 78.022 182 18 8 5548 5707 452755891 452755710 1.790000e-15 95.3
11 TraesCS1A01G246600 chr1D 92.639 2812 117 35 745 3524 337904806 337902053 0.000000e+00 3964.0
12 TraesCS1A01G246600 chr1D 93.475 1793 72 21 3526 5291 337902016 337900242 0.000000e+00 2621.0
13 TraesCS1A01G246600 chr1D 92.593 378 20 5 5338 5713 337899953 337899582 2.480000e-148 536.0
14 TraesCS1A01G246600 chr1D 88.961 154 12 2 2521 2674 415670479 415670627 1.030000e-42 185.0
15 TraesCS1A01G246600 chr1D 97.196 107 3 0 5930 6036 337899315 337899209 1.340000e-41 182.0
16 TraesCS1A01G246600 chr1D 84.746 177 19 7 264 438 337904996 337904826 2.890000e-38 171.0
17 TraesCS1A01G246600 chr1D 88.636 132 4 4 5735 5857 337899599 337899470 3.770000e-32 150.0
18 TraesCS1A01G246600 chr4A 91.154 260 22 1 432 690 150813979 150814238 9.630000e-93 351.0
19 TraesCS1A01G246600 chr4A 90.805 261 23 1 433 692 475956267 475956527 1.250000e-91 348.0
20 TraesCS1A01G246600 chr4A 88.848 269 28 2 432 700 571297506 571297240 4.510000e-86 329.0
21 TraesCS1A01G246600 chr4A 78.146 151 27 5 270 416 67331837 67331689 2.320000e-14 91.6
22 TraesCS1A01G246600 chr7D 89.219 269 27 2 432 700 274688316 274688050 9.690000e-88 335.0
23 TraesCS1A01G246600 chr7D 85.171 263 38 1 432 693 373580545 373580807 9.970000e-68 268.0
24 TraesCS1A01G246600 chr7D 81.290 155 24 4 265 416 80707144 80706992 2.950000e-23 121.0
25 TraesCS1A01G246600 chr7A 88.848 269 27 3 432 700 307952834 307952569 1.620000e-85 327.0
26 TraesCS1A01G246600 chr7A 90.000 260 17 4 432 690 613641182 613640931 1.620000e-85 327.0
27 TraesCS1A01G246600 chr2D 87.037 270 30 4 432 700 153790339 153790604 3.540000e-77 300.0
28 TraesCS1A01G246600 chr2D 88.889 72 6 2 149 220 501268210 501268141 3.000000e-13 87.9
29 TraesCS1A01G246600 chr2D 86.076 79 9 2 152 228 3805423 3805345 3.880000e-12 84.2
30 TraesCS1A01G246600 chr5D 90.222 225 20 2 476 700 384795401 384795179 5.920000e-75 292.0
31 TraesCS1A01G246600 chr6B 94.737 152 8 0 2523 2674 660467614 660467765 2.810000e-58 237.0
32 TraesCS1A01G246600 chr6B 82.105 95 13 2 144 235 6581744 6581837 1.800000e-10 78.7
33 TraesCS1A01G246600 chr6B 80.189 106 15 5 126 227 591573602 591573705 2.330000e-09 75.0
34 TraesCS1A01G246600 chr2A 94.079 152 9 0 2523 2674 19354477 19354628 1.310000e-56 231.0
35 TraesCS1A01G246600 chr7B 80.349 229 25 8 3931 4157 727912456 727912246 8.100000e-34 156.0
36 TraesCS1A01G246600 chr7B 85.542 83 7 4 122 201 715248370 715248450 1.390000e-11 82.4
37 TraesCS1A01G246600 chr3B 81.046 153 25 4 265 415 690753002 690752852 1.060000e-22 119.0
38 TraesCS1A01G246600 chr4B 80.392 153 27 3 265 416 95459209 95459359 4.940000e-21 113.0
39 TraesCS1A01G246600 chr5A 86.667 105 9 5 127 227 490858516 490858619 1.780000e-20 111.0
40 TraesCS1A01G246600 chr5A 89.333 75 7 1 143 217 383835438 383835365 6.440000e-15 93.5
41 TraesCS1A01G246600 chr3D 79.605 152 27 4 265 414 380484455 380484604 8.270000e-19 106.0
42 TraesCS1A01G246600 chr2B 85.870 92 12 1 127 217 9139398 9139489 4.980000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G246600 chr1A 436435364 436441399 6035 True 11147.000000 11147 100.000000 1 6036 1 chr1A.!!$R3 6035
1 TraesCS1A01G246600 chr1B 452754988 452760820 5832 True 1421.460000 4157 89.718200 264 6036 5 chr1B.!!$R1 5772
2 TraesCS1A01G246600 chr1B 452770976 452771665 689 True 230.000000 320 88.168333 119 942 3 chr1B.!!$R2 823
3 TraesCS1A01G246600 chr1D 337899209 337904996 5787 True 1270.666667 3964 91.547500 264 6036 6 chr1D.!!$R1 5772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 803 0.107017 CCCGCAGAATGTCCTCCATT 60.107 55.000 0.00 0.00 46.51 3.16 F
1598 1751 0.754472 CCATGGGCTGGCCATTTTAG 59.246 55.000 30.83 19.74 38.47 1.85 F
2801 2969 1.520666 CATCCACCCTGGTACCGTC 59.479 63.158 7.57 0.00 39.03 4.79 F
3173 3350 3.069586 TCAGGTACATACTGGCATACTGC 59.930 47.826 0.00 0.00 44.08 4.40 F
4118 4333 0.383590 CACGTTGTTGTGGCCATCAA 59.616 50.000 9.72 12.78 36.20 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1880 0.523072 CCTTTCCACTTGCCATCACG 59.477 55.0 0.00 0.0 0.00 4.35 R
3193 3370 0.107312 AGCATCAGATGACTGCCCAC 60.107 55.0 15.12 0.0 43.17 4.61 R
3944 4159 0.999406 CCACGATTCAACACGCCTAG 59.001 55.0 0.00 0.0 0.00 3.02 R
4969 5187 1.067295 ACAGCCTGATGAAACCCTCA 58.933 50.0 0.00 0.0 38.81 3.86 R
5358 5855 0.108138 CCAGATCCACGGAACCACTC 60.108 60.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.257933 GCACAACTTGCCTCTCGG 58.742 61.111 0.00 0.00 46.63 4.63
31 32 1.301716 GCACAACTTGCCTCTCGGA 60.302 57.895 0.00 0.00 46.63 4.55
32 33 0.884704 GCACAACTTGCCTCTCGGAA 60.885 55.000 0.00 0.00 46.63 4.30
33 34 1.593196 CACAACTTGCCTCTCGGAAA 58.407 50.000 0.00 0.00 0.00 3.13
70 71 2.820059 TTTTGCTTCTGCGAGAGAGA 57.180 45.000 0.00 0.00 43.34 3.10
71 72 2.071688 TTTGCTTCTGCGAGAGAGAC 57.928 50.000 0.00 0.00 43.34 3.36
72 73 0.961753 TTGCTTCTGCGAGAGAGACA 59.038 50.000 0.00 0.00 43.34 3.41
73 74 0.961753 TGCTTCTGCGAGAGAGACAA 59.038 50.000 0.00 0.00 43.34 3.18
74 75 1.341209 TGCTTCTGCGAGAGAGACAAA 59.659 47.619 0.00 0.00 43.34 2.83
75 76 2.028658 TGCTTCTGCGAGAGAGACAAAT 60.029 45.455 0.00 0.00 43.34 2.32
76 77 2.999355 GCTTCTGCGAGAGAGACAAATT 59.001 45.455 0.00 0.00 30.18 1.82
77 78 3.434984 GCTTCTGCGAGAGAGACAAATTT 59.565 43.478 0.00 0.00 30.18 1.82
78 79 4.668686 GCTTCTGCGAGAGAGACAAATTTG 60.669 45.833 16.67 16.67 30.18 2.32
79 80 2.738846 TCTGCGAGAGAGACAAATTTGC 59.261 45.455 18.12 10.76 0.00 3.68
80 81 2.740981 CTGCGAGAGAGACAAATTTGCT 59.259 45.455 18.12 15.14 0.00 3.91
81 82 3.141398 TGCGAGAGAGACAAATTTGCTT 58.859 40.909 18.12 6.42 0.00 3.91
82 83 4.314961 TGCGAGAGAGACAAATTTGCTTA 58.685 39.130 18.12 0.00 0.00 3.09
83 84 4.937620 TGCGAGAGAGACAAATTTGCTTAT 59.062 37.500 18.12 3.81 0.00 1.73
84 85 5.063944 TGCGAGAGAGACAAATTTGCTTATC 59.936 40.000 18.12 12.44 0.00 1.75
85 86 5.063944 GCGAGAGAGACAAATTTGCTTATCA 59.936 40.000 18.12 0.00 0.00 2.15
86 87 6.238320 GCGAGAGAGACAAATTTGCTTATCAT 60.238 38.462 18.12 0.00 0.00 2.45
87 88 7.124471 CGAGAGAGACAAATTTGCTTATCATG 58.876 38.462 18.12 6.27 0.00 3.07
88 89 7.201591 CGAGAGAGACAAATTTGCTTATCATGT 60.202 37.037 18.12 0.00 0.00 3.21
89 90 9.102757 GAGAGAGACAAATTTGCTTATCATGTA 57.897 33.333 18.12 0.00 0.00 2.29
90 91 9.107177 AGAGAGACAAATTTGCTTATCATGTAG 57.893 33.333 18.12 0.00 0.00 2.74
91 92 8.218338 AGAGACAAATTTGCTTATCATGTAGG 57.782 34.615 18.12 0.00 0.00 3.18
92 93 6.799512 AGACAAATTTGCTTATCATGTAGGC 58.200 36.000 18.12 0.00 0.00 3.93
93 94 6.377996 AGACAAATTTGCTTATCATGTAGGCA 59.622 34.615 18.12 7.63 0.00 4.75
94 95 6.332630 ACAAATTTGCTTATCATGTAGGCAC 58.667 36.000 18.12 0.00 32.47 5.01
95 96 6.071447 ACAAATTTGCTTATCATGTAGGCACA 60.071 34.615 18.12 6.29 39.52 4.57
96 97 6.720112 AATTTGCTTATCATGTAGGCACAT 57.280 33.333 10.21 7.84 46.58 3.21
97 98 7.822161 AATTTGCTTATCATGTAGGCACATA 57.178 32.000 10.21 2.96 43.73 2.29
98 99 8.413309 AATTTGCTTATCATGTAGGCACATAT 57.587 30.769 10.21 4.52 43.73 1.78
99 100 7.822161 TTTGCTTATCATGTAGGCACATATT 57.178 32.000 10.21 0.00 43.73 1.28
100 101 7.822161 TTGCTTATCATGTAGGCACATATTT 57.178 32.000 10.21 0.00 43.73 1.40
101 102 7.205737 TGCTTATCATGTAGGCACATATTTG 57.794 36.000 7.63 0.00 43.73 2.32
102 103 6.088824 GCTTATCATGTAGGCACATATTTGC 58.911 40.000 5.23 5.23 43.73 3.68
103 104 6.072286 GCTTATCATGTAGGCACATATTTGCT 60.072 38.462 13.29 3.03 43.73 3.91
104 105 7.522725 GCTTATCATGTAGGCACATATTTGCTT 60.523 37.037 13.29 8.64 43.73 3.91
105 106 6.720112 ATCATGTAGGCACATATTTGCTTT 57.280 33.333 13.29 5.44 43.73 3.51
106 107 7.822161 ATCATGTAGGCACATATTTGCTTTA 57.178 32.000 13.29 4.57 43.73 1.85
107 108 7.263100 TCATGTAGGCACATATTTGCTTTAG 57.737 36.000 13.29 0.77 43.73 1.85
108 109 5.499139 TGTAGGCACATATTTGCTTTAGC 57.501 39.130 13.29 0.00 42.56 3.09
109 110 3.698029 AGGCACATATTTGCTTTAGCG 57.302 42.857 13.29 0.00 45.83 4.26
110 111 3.278574 AGGCACATATTTGCTTTAGCGA 58.721 40.909 13.29 0.00 45.83 4.93
111 112 3.313526 AGGCACATATTTGCTTTAGCGAG 59.686 43.478 13.29 0.00 45.83 5.03
112 113 3.312421 GGCACATATTTGCTTTAGCGAGA 59.688 43.478 13.29 0.00 45.83 4.04
113 114 4.521943 GCACATATTTGCTTTAGCGAGAG 58.478 43.478 6.60 0.00 45.83 3.20
114 115 4.034510 GCACATATTTGCTTTAGCGAGAGT 59.965 41.667 6.60 0.00 45.83 3.24
115 116 5.732288 CACATATTTGCTTTAGCGAGAGTC 58.268 41.667 0.00 0.00 45.83 3.36
116 117 4.504461 ACATATTTGCTTTAGCGAGAGTCG 59.496 41.667 0.00 0.00 45.83 4.18
152 153 0.737367 TCGAGAGGCGCACAGATTTG 60.737 55.000 10.83 0.00 40.61 2.32
159 160 0.519999 GCGCACAGATTTGCTTCTCG 60.520 55.000 0.30 0.00 40.62 4.04
161 162 1.463034 CGCACAGATTTGCTTCTCGTG 60.463 52.381 0.00 0.00 40.62 4.35
206 207 2.109799 CACAGCTATGCCCCTCGG 59.890 66.667 0.00 0.00 0.00 4.63
211 212 0.691078 AGCTATGCCCCTCGGAAAGA 60.691 55.000 0.00 0.00 0.00 2.52
212 213 0.250081 GCTATGCCCCTCGGAAAGAG 60.250 60.000 0.00 0.00 46.44 2.85
260 270 0.798776 CTCGTGGAGGCACATGTTTC 59.201 55.000 0.00 0.00 0.00 2.78
318 436 0.508641 CGCGAGAAACCAACAGTGAG 59.491 55.000 0.00 0.00 0.00 3.51
324 442 2.169769 AGAAACCAACAGTGAGAACGGA 59.830 45.455 0.00 0.00 0.00 4.69
349 467 4.612712 CGTGGTTTTGACGCACAGATTTAT 60.613 41.667 0.00 0.00 0.00 1.40
353 471 6.597672 TGGTTTTGACGCACAGATTTATAGAT 59.402 34.615 0.00 0.00 0.00 1.98
433 552 5.580022 AGTGGCAATGGTACTCCTTAATTT 58.420 37.500 0.00 0.00 34.23 1.82
434 553 6.016555 AGTGGCAATGGTACTCCTTAATTTT 58.983 36.000 0.00 0.00 34.23 1.82
435 554 6.496911 AGTGGCAATGGTACTCCTTAATTTTT 59.503 34.615 0.00 0.00 34.23 1.94
460 579 8.873215 TTTAAACAAAACATCGCCTTTATTCA 57.127 26.923 0.00 0.00 0.00 2.57
461 580 9.482627 TTTAAACAAAACATCGCCTTTATTCAT 57.517 25.926 0.00 0.00 0.00 2.57
462 581 7.961325 AAACAAAACATCGCCTTTATTCATT 57.039 28.000 0.00 0.00 0.00 2.57
463 582 6.949578 ACAAAACATCGCCTTTATTCATTG 57.050 33.333 0.00 0.00 0.00 2.82
464 583 5.868801 ACAAAACATCGCCTTTATTCATTGG 59.131 36.000 0.00 0.00 0.00 3.16
465 584 5.913137 AAACATCGCCTTTATTCATTGGA 57.087 34.783 0.00 0.00 0.00 3.53
466 585 5.913137 AACATCGCCTTTATTCATTGGAA 57.087 34.783 0.00 0.00 37.45 3.53
467 586 5.913137 ACATCGCCTTTATTCATTGGAAA 57.087 34.783 0.00 0.00 36.43 3.13
468 587 6.469782 ACATCGCCTTTATTCATTGGAAAT 57.530 33.333 0.00 0.00 36.43 2.17
469 588 7.581213 ACATCGCCTTTATTCATTGGAAATA 57.419 32.000 0.00 0.00 36.43 1.40
470 589 8.006298 ACATCGCCTTTATTCATTGGAAATAA 57.994 30.769 0.00 0.00 36.43 1.40
471 590 7.920682 ACATCGCCTTTATTCATTGGAAATAAC 59.079 33.333 0.00 0.00 36.43 1.89
472 591 7.397892 TCGCCTTTATTCATTGGAAATAACA 57.602 32.000 0.00 0.00 36.43 2.41
473 592 7.479980 TCGCCTTTATTCATTGGAAATAACAG 58.520 34.615 0.00 0.00 36.43 3.16
474 593 7.122055 TCGCCTTTATTCATTGGAAATAACAGT 59.878 33.333 0.00 0.00 36.43 3.55
475 594 7.759433 CGCCTTTATTCATTGGAAATAACAGTT 59.241 33.333 0.00 0.00 36.43 3.16
482 601 7.915293 TCATTGGAAATAACAGTTACATCGT 57.085 32.000 0.00 0.00 0.00 3.73
483 602 8.330466 TCATTGGAAATAACAGTTACATCGTT 57.670 30.769 0.00 0.00 0.00 3.85
484 603 9.438228 TCATTGGAAATAACAGTTACATCGTTA 57.562 29.630 0.00 0.00 0.00 3.18
529 648 9.300681 TCATTCATAGGTTTCTCAAAACAATCT 57.699 29.630 3.71 0.00 45.44 2.40
530 649 9.565213 CATTCATAGGTTTCTCAAAACAATCTC 57.435 33.333 3.71 0.00 45.44 2.75
531 650 8.924511 TTCATAGGTTTCTCAAAACAATCTCT 57.075 30.769 3.71 0.00 45.44 3.10
533 652 9.658799 TCATAGGTTTCTCAAAACAATCTCTAG 57.341 33.333 3.71 0.00 45.44 2.43
534 653 9.442047 CATAGGTTTCTCAAAACAATCTCTAGT 57.558 33.333 3.71 0.00 45.44 2.57
535 654 7.971183 AGGTTTCTCAAAACAATCTCTAGTC 57.029 36.000 3.71 0.00 45.44 2.59
536 655 7.509546 AGGTTTCTCAAAACAATCTCTAGTCA 58.490 34.615 3.71 0.00 45.44 3.41
537 656 7.442666 AGGTTTCTCAAAACAATCTCTAGTCAC 59.557 37.037 3.71 0.00 45.44 3.67
538 657 7.284351 GTTTCTCAAAACAATCTCTAGTCACG 58.716 38.462 0.00 0.00 43.52 4.35
539 658 5.470368 TCTCAAAACAATCTCTAGTCACGG 58.530 41.667 0.00 0.00 0.00 4.94
540 659 5.243060 TCTCAAAACAATCTCTAGTCACGGA 59.757 40.000 0.00 0.00 0.00 4.69
541 660 5.849510 TCAAAACAATCTCTAGTCACGGAA 58.150 37.500 0.00 0.00 0.00 4.30
542 661 6.285224 TCAAAACAATCTCTAGTCACGGAAA 58.715 36.000 0.00 0.00 0.00 3.13
543 662 6.764085 TCAAAACAATCTCTAGTCACGGAAAA 59.236 34.615 0.00 0.00 0.00 2.29
544 663 7.444183 TCAAAACAATCTCTAGTCACGGAAAAT 59.556 33.333 0.00 0.00 0.00 1.82
545 664 7.745620 AAACAATCTCTAGTCACGGAAAATT 57.254 32.000 0.00 0.00 0.00 1.82
546 665 7.745620 AACAATCTCTAGTCACGGAAAATTT 57.254 32.000 0.00 0.00 0.00 1.82
547 666 8.842358 AACAATCTCTAGTCACGGAAAATTTA 57.158 30.769 0.00 0.00 0.00 1.40
548 667 8.480643 ACAATCTCTAGTCACGGAAAATTTAG 57.519 34.615 0.00 0.00 0.00 1.85
549 668 7.064728 ACAATCTCTAGTCACGGAAAATTTAGC 59.935 37.037 0.00 0.00 0.00 3.09
550 669 6.282199 TCTCTAGTCACGGAAAATTTAGCT 57.718 37.500 0.00 0.00 0.00 3.32
551 670 7.400599 TCTCTAGTCACGGAAAATTTAGCTA 57.599 36.000 0.00 0.00 0.00 3.32
552 671 7.833786 TCTCTAGTCACGGAAAATTTAGCTAA 58.166 34.615 0.86 0.86 0.00 3.09
553 672 8.475639 TCTCTAGTCACGGAAAATTTAGCTAAT 58.524 33.333 7.08 0.00 0.00 1.73
554 673 8.644318 TCTAGTCACGGAAAATTTAGCTAATC 57.356 34.615 7.08 1.51 0.00 1.75
555 674 8.475639 TCTAGTCACGGAAAATTTAGCTAATCT 58.524 33.333 7.08 0.00 0.00 2.40
556 675 9.745880 CTAGTCACGGAAAATTTAGCTAATCTA 57.254 33.333 7.08 0.00 0.00 1.98
557 676 8.649973 AGTCACGGAAAATTTAGCTAATCTAG 57.350 34.615 7.08 3.72 0.00 2.43
572 691 6.486253 CTAATCTAGCAAGTTTGTGAGCAA 57.514 37.500 0.00 0.00 0.00 3.91
573 692 4.756084 ATCTAGCAAGTTTGTGAGCAAC 57.244 40.909 0.00 0.00 33.82 4.17
574 693 3.808728 TCTAGCAAGTTTGTGAGCAACT 58.191 40.909 0.00 0.00 33.82 3.16
575 694 4.199310 TCTAGCAAGTTTGTGAGCAACTT 58.801 39.130 0.00 0.00 33.82 2.66
576 695 3.874392 AGCAAGTTTGTGAGCAACTTT 57.126 38.095 0.00 0.00 33.82 2.66
577 696 4.981806 AGCAAGTTTGTGAGCAACTTTA 57.018 36.364 0.00 0.00 33.82 1.85
578 697 5.520376 AGCAAGTTTGTGAGCAACTTTAT 57.480 34.783 0.00 0.00 33.82 1.40
579 698 5.906073 AGCAAGTTTGTGAGCAACTTTATT 58.094 33.333 0.00 0.00 33.82 1.40
580 699 6.340522 AGCAAGTTTGTGAGCAACTTTATTT 58.659 32.000 0.00 0.00 33.82 1.40
581 700 6.256321 AGCAAGTTTGTGAGCAACTTTATTTG 59.744 34.615 0.00 0.00 33.82 2.32
603 722 9.709495 ATTTGCTTTTCTATTACAATGCTCAAA 57.291 25.926 0.00 0.00 0.00 2.69
604 723 9.539825 TTTGCTTTTCTATTACAATGCTCAAAA 57.460 25.926 0.00 0.00 0.00 2.44
605 724 9.709495 TTGCTTTTCTATTACAATGCTCAAAAT 57.291 25.926 0.00 0.00 0.00 1.82
606 725 9.709495 TGCTTTTCTATTACAATGCTCAAAATT 57.291 25.926 0.00 0.00 0.00 1.82
607 726 9.962759 GCTTTTCTATTACAATGCTCAAAATTG 57.037 29.630 0.00 0.00 40.23 2.32
613 732 7.684062 ATTACAATGCTCAAAATTGATACGC 57.316 32.000 3.32 0.00 38.21 4.42
614 733 4.097714 ACAATGCTCAAAATTGATACGCG 58.902 39.130 3.53 3.53 38.21 6.01
615 734 2.823196 TGCTCAAAATTGATACGCGG 57.177 45.000 12.47 0.00 36.46 6.46
616 735 2.351455 TGCTCAAAATTGATACGCGGA 58.649 42.857 12.47 0.00 36.46 5.54
617 736 2.744741 TGCTCAAAATTGATACGCGGAA 59.255 40.909 12.47 0.00 36.46 4.30
618 737 3.189495 TGCTCAAAATTGATACGCGGAAA 59.811 39.130 12.47 0.00 36.46 3.13
619 738 4.162812 GCTCAAAATTGATACGCGGAAAA 58.837 39.130 12.47 0.69 36.46 2.29
620 739 4.798387 GCTCAAAATTGATACGCGGAAAAT 59.202 37.500 12.47 3.60 36.46 1.82
621 740 5.052370 GCTCAAAATTGATACGCGGAAAATC 60.052 40.000 12.47 8.51 36.46 2.17
622 741 5.025190 TCAAAATTGATACGCGGAAAATCG 58.975 37.500 12.47 0.00 31.01 3.34
623 742 6.451285 TCAAAATTGATACGCGGAAAATCGC 61.451 40.000 12.47 0.00 41.31 4.58
624 743 8.742854 TCAAAATTGATACGCGGAAAATCGCA 62.743 38.462 12.47 0.00 43.13 5.10
630 749 2.791256 CGGAAAATCGCACGCCAT 59.209 55.556 0.00 0.00 0.00 4.40
631 750 2.010670 CGGAAAATCGCACGCCATA 58.989 52.632 0.00 0.00 0.00 2.74
632 751 0.375454 CGGAAAATCGCACGCCATAA 59.625 50.000 0.00 0.00 0.00 1.90
633 752 1.202087 CGGAAAATCGCACGCCATAAA 60.202 47.619 0.00 0.00 0.00 1.40
634 753 2.729467 CGGAAAATCGCACGCCATAAAA 60.729 45.455 0.00 0.00 0.00 1.52
635 754 3.443976 GGAAAATCGCACGCCATAAAAT 58.556 40.909 0.00 0.00 0.00 1.82
636 755 4.602995 GGAAAATCGCACGCCATAAAATA 58.397 39.130 0.00 0.00 0.00 1.40
637 756 5.038033 GGAAAATCGCACGCCATAAAATAA 58.962 37.500 0.00 0.00 0.00 1.40
638 757 5.051973 GGAAAATCGCACGCCATAAAATAAC 60.052 40.000 0.00 0.00 0.00 1.89
639 758 4.624336 AATCGCACGCCATAAAATAACA 57.376 36.364 0.00 0.00 0.00 2.41
640 759 4.624336 ATCGCACGCCATAAAATAACAA 57.376 36.364 0.00 0.00 0.00 2.83
641 760 4.624336 TCGCACGCCATAAAATAACAAT 57.376 36.364 0.00 0.00 0.00 2.71
642 761 4.593157 TCGCACGCCATAAAATAACAATC 58.407 39.130 0.00 0.00 0.00 2.67
643 762 4.095036 TCGCACGCCATAAAATAACAATCA 59.905 37.500 0.00 0.00 0.00 2.57
644 763 4.975502 CGCACGCCATAAAATAACAATCAT 59.024 37.500 0.00 0.00 0.00 2.45
645 764 5.115472 CGCACGCCATAAAATAACAATCATC 59.885 40.000 0.00 0.00 0.00 2.92
646 765 5.976534 GCACGCCATAAAATAACAATCATCA 59.023 36.000 0.00 0.00 0.00 3.07
647 766 6.142798 GCACGCCATAAAATAACAATCATCAG 59.857 38.462 0.00 0.00 0.00 2.90
648 767 7.416817 CACGCCATAAAATAACAATCATCAGA 58.583 34.615 0.00 0.00 0.00 3.27
649 768 7.914871 CACGCCATAAAATAACAATCATCAGAA 59.085 33.333 0.00 0.00 0.00 3.02
650 769 8.465999 ACGCCATAAAATAACAATCATCAGAAA 58.534 29.630 0.00 0.00 0.00 2.52
651 770 8.745837 CGCCATAAAATAACAATCATCAGAAAC 58.254 33.333 0.00 0.00 0.00 2.78
652 771 9.807649 GCCATAAAATAACAATCATCAGAAACT 57.192 29.630 0.00 0.00 0.00 2.66
655 774 9.807649 ATAAAATAACAATCATCAGAAACTGCC 57.192 29.630 0.00 0.00 0.00 4.85
656 775 6.839124 AATAACAATCATCAGAAACTGCCA 57.161 33.333 0.00 0.00 0.00 4.92
657 776 4.510038 AACAATCATCAGAAACTGCCAC 57.490 40.909 0.00 0.00 0.00 5.01
658 777 2.821969 ACAATCATCAGAAACTGCCACC 59.178 45.455 0.00 0.00 0.00 4.61
659 778 2.821378 CAATCATCAGAAACTGCCACCA 59.179 45.455 0.00 0.00 0.00 4.17
660 779 1.896220 TCATCAGAAACTGCCACCAC 58.104 50.000 0.00 0.00 0.00 4.16
661 780 0.883833 CATCAGAAACTGCCACCACC 59.116 55.000 0.00 0.00 0.00 4.61
662 781 0.478072 ATCAGAAACTGCCACCACCA 59.522 50.000 0.00 0.00 0.00 4.17
663 782 0.465460 TCAGAAACTGCCACCACCAC 60.465 55.000 0.00 0.00 0.00 4.16
664 783 0.466189 CAGAAACTGCCACCACCACT 60.466 55.000 0.00 0.00 0.00 4.00
665 784 0.179018 AGAAACTGCCACCACCACTC 60.179 55.000 0.00 0.00 0.00 3.51
666 785 1.152756 AAACTGCCACCACCACTCC 60.153 57.895 0.00 0.00 0.00 3.85
667 786 2.640581 AAACTGCCACCACCACTCCC 62.641 60.000 0.00 0.00 0.00 4.30
668 787 4.704833 CTGCCACCACCACTCCCG 62.705 72.222 0.00 0.00 0.00 5.14
671 790 4.704833 CCACCACCACTCCCGCAG 62.705 72.222 0.00 0.00 0.00 5.18
672 791 3.625897 CACCACCACTCCCGCAGA 61.626 66.667 0.00 0.00 0.00 4.26
673 792 2.847234 ACCACCACTCCCGCAGAA 60.847 61.111 0.00 0.00 0.00 3.02
674 793 2.224159 ACCACCACTCCCGCAGAAT 61.224 57.895 0.00 0.00 0.00 2.40
675 794 1.746615 CCACCACTCCCGCAGAATG 60.747 63.158 0.00 0.00 40.87 2.67
676 795 1.003355 CACCACTCCCGCAGAATGT 60.003 57.895 0.00 0.00 39.31 2.71
677 796 1.021390 CACCACTCCCGCAGAATGTC 61.021 60.000 0.00 0.00 39.31 3.06
678 797 1.450312 CCACTCCCGCAGAATGTCC 60.450 63.158 0.00 0.00 39.31 4.02
679 798 1.599047 CACTCCCGCAGAATGTCCT 59.401 57.895 0.00 0.00 39.31 3.85
680 799 0.460987 CACTCCCGCAGAATGTCCTC 60.461 60.000 0.00 0.00 39.31 3.71
681 800 1.144936 CTCCCGCAGAATGTCCTCC 59.855 63.158 0.00 0.00 39.31 4.30
682 801 1.612146 TCCCGCAGAATGTCCTCCA 60.612 57.895 0.00 0.00 39.31 3.86
683 802 0.982852 TCCCGCAGAATGTCCTCCAT 60.983 55.000 0.00 0.00 39.31 3.41
684 803 0.107017 CCCGCAGAATGTCCTCCATT 60.107 55.000 0.00 0.00 46.51 3.16
696 815 7.636150 AATGTCCTCCATTCTTCATTAGTTG 57.364 36.000 0.00 0.00 39.66 3.16
719 838 3.084786 CAGGGGAAAGTCCTTGTGATTC 58.915 50.000 0.00 0.00 36.57 2.52
732 851 3.342377 TGTGATTCGGCCAATCTGTTA 57.658 42.857 21.12 5.85 41.58 2.41
734 853 3.876914 TGTGATTCGGCCAATCTGTTATC 59.123 43.478 21.12 6.50 41.58 1.75
805 927 5.047660 AGCGTAATCTGATCTTCCTGGATAC 60.048 44.000 0.00 0.00 0.00 2.24
925 1063 1.379309 ACCTCAGCTCGTCTCCCTC 60.379 63.158 0.00 0.00 0.00 4.30
1235 1376 2.350102 CCGTCAAAAAGTTTACGCCTCC 60.350 50.000 4.26 0.00 33.87 4.30
1273 1414 3.784701 TCGAAGTATCCTTCTGTGCTC 57.215 47.619 0.00 0.00 44.12 4.26
1282 1423 1.560923 CTTCTGTGCTCGATTACGGG 58.439 55.000 7.83 0.00 43.59 5.28
1403 1549 5.196695 GTTCCTCCTTTCTTGCTGGAATAT 58.803 41.667 0.00 0.00 36.23 1.28
1409 1555 8.139989 CCTCCTTTCTTGCTGGAATATATTTTG 58.860 37.037 0.00 0.00 0.00 2.44
1430 1576 3.635373 TGATAAACTAGCCTCCTACGGTG 59.365 47.826 0.00 0.00 0.00 4.94
1449 1601 4.485163 GGTGAAATGGTCGAAAGAAATGG 58.515 43.478 0.00 0.00 45.01 3.16
1474 1626 1.844687 ATTTTTCAGGCCTCTGGAGC 58.155 50.000 0.00 0.00 41.23 4.70
1558 1711 3.553508 CCTTTGATGAAAACTGGTGCTGG 60.554 47.826 0.00 0.00 0.00 4.85
1559 1712 2.363306 TGATGAAAACTGGTGCTGGT 57.637 45.000 0.00 0.00 0.00 4.00
1561 1714 3.146066 TGATGAAAACTGGTGCTGGTAC 58.854 45.455 0.00 0.00 0.00 3.34
1563 1716 4.041075 TGATGAAAACTGGTGCTGGTACTA 59.959 41.667 0.00 0.00 0.00 1.82
1564 1717 4.002906 TGAAAACTGGTGCTGGTACTAG 57.997 45.455 1.08 1.08 35.53 2.57
1565 1718 3.389983 TGAAAACTGGTGCTGGTACTAGT 59.610 43.478 8.16 0.00 43.14 2.57
1566 1719 4.589798 TGAAAACTGGTGCTGGTACTAGTA 59.410 41.667 8.16 0.00 40.86 1.82
1567 1720 4.803098 AAACTGGTGCTGGTACTAGTAG 57.197 45.455 8.16 0.00 40.86 2.57
1568 1721 3.453059 ACTGGTGCTGGTACTAGTAGT 57.547 47.619 8.14 8.14 40.09 2.73
1569 1722 3.090037 ACTGGTGCTGGTACTAGTAGTG 58.910 50.000 13.29 0.00 40.09 2.74
1570 1723 1.822990 TGGTGCTGGTACTAGTAGTGC 59.177 52.381 13.29 11.44 0.00 4.40
1598 1751 0.754472 CCATGGGCTGGCCATTTTAG 59.246 55.000 30.83 19.74 38.47 1.85
1631 1784 6.272822 AGATTTGCAATAGGAAACTTGACC 57.727 37.500 0.00 0.00 43.67 4.02
1635 1788 2.418976 GCAATAGGAAACTTGACCGACC 59.581 50.000 0.00 0.00 43.67 4.79
1650 1803 6.210287 TGACCGACCTATTTTTGTGTTTTT 57.790 33.333 0.00 0.00 0.00 1.94
1727 1880 3.923017 AAATCTGCAGGTGTTAGTTGC 57.077 42.857 15.13 0.00 38.30 4.17
1742 1895 2.429494 TGCGTGATGGCAAGTGGA 59.571 55.556 0.00 0.00 40.59 4.02
1885 2038 7.308348 GCTTAGGTACAACTGCAAATGTTTCTA 60.308 37.037 9.10 8.60 0.00 2.10
1886 2039 6.952773 AGGTACAACTGCAAATGTTTCTAA 57.047 33.333 9.10 0.00 0.00 2.10
1887 2040 7.341445 AGGTACAACTGCAAATGTTTCTAAA 57.659 32.000 9.10 0.00 0.00 1.85
2072 2234 9.920133 TTTAATCTGCAATGTTGTGCTAAATTA 57.080 25.926 0.00 0.00 45.17 1.40
2075 2237 7.680442 TCTGCAATGTTGTGCTAAATTACTA 57.320 32.000 0.00 0.00 45.17 1.82
2367 2534 4.318332 CAGTGAACCATCAGTTAAGCTCA 58.682 43.478 0.00 0.00 39.40 4.26
2381 2549 9.528489 TCAGTTAAGCTCATATTTTACCCTTTT 57.472 29.630 0.00 0.00 0.00 2.27
2608 2776 6.985645 AGTTGTATTTTGTGATTTGTGTGCAT 59.014 30.769 0.00 0.00 0.00 3.96
2677 2845 7.664082 ATCTGTTGTTGATCTTCAGTTACAG 57.336 36.000 0.00 4.86 34.18 2.74
2696 2864 9.185680 AGTTACAGTATCTTTTGGAGTGTTTTT 57.814 29.630 0.00 0.00 0.00 1.94
2801 2969 1.520666 CATCCACCCTGGTACCGTC 59.479 63.158 7.57 0.00 39.03 4.79
2900 3077 7.855784 ATTTTATTTGTTCCCTGGAAGTCTT 57.144 32.000 0.00 0.00 34.49 3.01
3054 3231 8.019656 TGTCCTTATATTCCTTTGAGGACTAC 57.980 38.462 18.03 0.00 45.78 2.73
3055 3232 7.844779 TGTCCTTATATTCCTTTGAGGACTACT 59.155 37.037 18.03 0.00 45.78 2.57
3056 3233 9.364653 GTCCTTATATTCCTTTGAGGACTACTA 57.635 37.037 11.92 0.00 45.78 1.82
3063 3240 7.490657 TTCCTTTGAGGACTACTAAGCAATA 57.509 36.000 0.00 0.00 45.78 1.90
3165 3342 4.067896 GGCAATGATCAGGTACATACTGG 58.932 47.826 0.09 0.00 36.62 4.00
3166 3343 3.499918 GCAATGATCAGGTACATACTGGC 59.500 47.826 0.09 0.00 36.62 4.85
3167 3344 4.707105 CAATGATCAGGTACATACTGGCA 58.293 43.478 0.09 0.00 36.62 4.92
3168 3345 5.311265 CAATGATCAGGTACATACTGGCAT 58.689 41.667 0.09 0.00 36.62 4.40
3169 3346 6.466812 CAATGATCAGGTACATACTGGCATA 58.533 40.000 0.09 0.00 36.62 3.14
3170 3347 5.468540 TGATCAGGTACATACTGGCATAC 57.531 43.478 0.00 0.00 36.62 2.39
3171 3348 5.147767 TGATCAGGTACATACTGGCATACT 58.852 41.667 0.00 0.00 36.62 2.12
3172 3349 4.937201 TCAGGTACATACTGGCATACTG 57.063 45.455 0.00 0.00 36.62 2.74
3173 3350 3.069586 TCAGGTACATACTGGCATACTGC 59.930 47.826 0.00 0.00 44.08 4.40
3174 3351 3.070159 CAGGTACATACTGGCATACTGCT 59.930 47.826 0.00 0.00 44.28 4.24
3175 3352 3.711704 AGGTACATACTGGCATACTGCTT 59.288 43.478 0.00 0.00 44.28 3.91
3193 3370 7.894376 ACTGCTTTTCATGGAAATGTTAATG 57.106 32.000 0.00 0.00 31.34 1.90
3421 3598 7.361457 GCACCTTAGCCATGAGGTATATATA 57.639 40.000 3.63 0.00 43.33 0.86
3471 3648 6.016555 AGGGTTTATGGAGCTGTATTGTTTT 58.983 36.000 0.00 0.00 0.00 2.43
3524 3702 6.020121 ACAGTAATTCGTACATGATGCGTAAC 60.020 38.462 0.00 0.00 37.71 2.50
3804 4018 9.715121 CAGTGTACCCTTTTTACTAAATCTGTA 57.285 33.333 0.00 0.00 0.00 2.74
3864 4079 7.701539 ACTAAATCTGTGCAATGGTTCATAA 57.298 32.000 0.00 0.00 0.00 1.90
3865 4080 7.538575 ACTAAATCTGTGCAATGGTTCATAAC 58.461 34.615 0.00 0.00 0.00 1.89
3866 4081 6.594788 AAATCTGTGCAATGGTTCATAACT 57.405 33.333 0.00 0.00 0.00 2.24
3867 4082 6.594788 AATCTGTGCAATGGTTCATAACTT 57.405 33.333 0.00 0.00 0.00 2.66
3868 4083 5.627499 TCTGTGCAATGGTTCATAACTTC 57.373 39.130 0.00 0.00 0.00 3.01
3869 4084 5.069318 TCTGTGCAATGGTTCATAACTTCA 58.931 37.500 0.00 0.00 0.00 3.02
3944 4159 7.494625 TGGATTCTGGACACGATTATTCTAAAC 59.505 37.037 0.00 0.00 0.00 2.01
3950 4165 5.401674 GGACACGATTATTCTAAACTAGGCG 59.598 44.000 0.00 0.00 0.00 5.52
4110 4325 3.691049 AGAAATGGTCACGTTGTTGTG 57.309 42.857 0.00 0.00 41.28 3.33
4115 4330 2.029743 GTCACGTTGTTGTGGCCAT 58.970 52.632 9.72 0.00 38.52 4.40
4118 4333 0.383590 CACGTTGTTGTGGCCATCAA 59.616 50.000 9.72 12.78 36.20 2.57
4209 4425 6.106673 ACTATCGGTCCATTTCTGTTGTAAG 58.893 40.000 0.00 0.00 0.00 2.34
4221 4437 3.936453 TCTGTTGTAAGCACTTTGTTCGT 59.064 39.130 0.00 0.00 0.00 3.85
4227 4443 5.743467 TGTAAGCACTTTGTTCGTGTATTG 58.257 37.500 0.00 0.00 34.91 1.90
4232 4448 6.096695 AGCACTTTGTTCGTGTATTGTTTTT 58.903 32.000 0.00 0.00 34.91 1.94
4233 4449 7.251994 AGCACTTTGTTCGTGTATTGTTTTTA 58.748 30.769 0.00 0.00 34.91 1.52
4234 4450 7.755822 AGCACTTTGTTCGTGTATTGTTTTTAA 59.244 29.630 0.00 0.00 34.91 1.52
4235 4451 7.837446 GCACTTTGTTCGTGTATTGTTTTTAAC 59.163 33.333 0.00 0.00 34.91 2.01
4343 4561 7.174080 ACTTTGTTTGTGCCTTTTTGTTACATT 59.826 29.630 0.00 0.00 0.00 2.71
4431 4649 4.009370 TCCATTGTTCCACGATAACACA 57.991 40.909 0.00 0.00 36.61 3.72
4498 4716 2.481441 TGCAGGTATCTGGAGATTGGT 58.519 47.619 4.87 0.00 41.19 3.67
4504 4722 6.014156 GCAGGTATCTGGAGATTGGTATAGTT 60.014 42.308 4.87 0.00 41.19 2.24
4510 4728 3.780294 TGGAGATTGGTATAGTTGCTGGT 59.220 43.478 0.00 0.00 0.00 4.00
4513 4731 5.179452 AGATTGGTATAGTTGCTGGTGTT 57.821 39.130 0.00 0.00 0.00 3.32
4954 5172 2.885894 GTTCGAGAACGGGGAGATCTAT 59.114 50.000 0.00 0.00 40.21 1.98
4969 5187 0.684479 TCTATGACCAGGCTGACGCT 60.684 55.000 17.94 0.30 36.09 5.07
4972 5190 2.125753 GACCAGGCTGACGCTGAG 60.126 66.667 17.94 0.00 36.09 3.35
5036 5254 2.130193 TGCTGGAGAAGGGCATCTAAT 58.870 47.619 0.00 0.00 0.00 1.73
5037 5255 2.105477 TGCTGGAGAAGGGCATCTAATC 59.895 50.000 0.00 0.00 0.00 1.75
5038 5256 2.371510 GCTGGAGAAGGGCATCTAATCT 59.628 50.000 0.00 0.00 0.00 2.40
5043 5261 4.595350 GGAGAAGGGCATCTAATCTAAGGT 59.405 45.833 0.00 0.00 0.00 3.50
5057 5275 2.295349 TCTAAGGTCGTCTTTGCGTCTT 59.705 45.455 0.00 0.00 36.93 3.01
5096 5314 1.013596 TGAAAACTGCCGAGTGTGTG 58.986 50.000 0.00 0.00 30.61 3.82
5097 5315 1.014352 GAAAACTGCCGAGTGTGTGT 58.986 50.000 0.00 0.00 30.61 3.72
5110 5328 4.441415 CGAGTGTGTGTCTTTGAGTAACTC 59.559 45.833 0.00 0.00 0.00 3.01
5180 5403 5.712917 TGGAGTTTCTGTTTTGTTTGGTAGT 59.287 36.000 0.00 0.00 0.00 2.73
5181 5404 6.885376 TGGAGTTTCTGTTTTGTTTGGTAGTA 59.115 34.615 0.00 0.00 0.00 1.82
5183 5406 7.860872 GGAGTTTCTGTTTTGTTTGGTAGTATG 59.139 37.037 0.00 0.00 0.00 2.39
5185 5408 9.398538 AGTTTCTGTTTTGTTTGGTAGTATGTA 57.601 29.630 0.00 0.00 0.00 2.29
5231 5479 4.570772 AGTAATATACTGTTTGGTGCTGCG 59.429 41.667 0.00 0.00 37.69 5.18
5252 5506 0.668401 CCGGGTGTGTTCGGTTACTC 60.668 60.000 0.00 0.00 41.23 2.59
5266 5520 3.730662 CGGTTACTCGCATCATTTTTGGG 60.731 47.826 0.00 0.00 0.00 4.12
5267 5521 3.179048 GTTACTCGCATCATTTTTGGGC 58.821 45.455 0.00 0.00 0.00 5.36
5269 5523 1.895131 ACTCGCATCATTTTTGGGCTT 59.105 42.857 0.00 0.00 0.00 4.35
5271 5525 1.204467 TCGCATCATTTTTGGGCTTCC 59.796 47.619 0.00 0.00 0.00 3.46
5272 5526 1.205417 CGCATCATTTTTGGGCTTCCT 59.795 47.619 0.00 0.00 0.00 3.36
5274 5528 2.678769 GCATCATTTTTGGGCTTCCTGG 60.679 50.000 0.00 0.00 0.00 4.45
5275 5529 1.643310 TCATTTTTGGGCTTCCTGGG 58.357 50.000 0.00 0.00 0.00 4.45
5276 5530 1.148867 TCATTTTTGGGCTTCCTGGGA 59.851 47.619 0.00 0.00 0.00 4.37
5278 5532 0.471022 TTTTTGGGCTTCCTGGGACC 60.471 55.000 0.00 0.00 0.00 4.46
5290 5544 3.936535 GGGACCTGACCCGTAGAG 58.063 66.667 0.00 0.00 40.49 2.43
5291 5545 1.305623 GGGACCTGACCCGTAGAGA 59.694 63.158 0.00 0.00 40.49 3.10
5293 5547 0.323178 GGACCTGACCCGTAGAGACA 60.323 60.000 0.00 0.00 0.00 3.41
5295 5549 1.677052 GACCTGACCCGTAGAGACATC 59.323 57.143 0.00 0.00 0.00 3.06
5296 5550 1.005569 ACCTGACCCGTAGAGACATCA 59.994 52.381 0.00 0.00 0.00 3.07
5297 5551 2.311463 CCTGACCCGTAGAGACATCAT 58.689 52.381 0.00 0.00 0.00 2.45
5298 5552 3.117625 ACCTGACCCGTAGAGACATCATA 60.118 47.826 0.00 0.00 0.00 2.15
5299 5553 3.889538 CCTGACCCGTAGAGACATCATAA 59.110 47.826 0.00 0.00 0.00 1.90
5300 5554 4.261656 CCTGACCCGTAGAGACATCATAAC 60.262 50.000 0.00 0.00 0.00 1.89
5302 5556 3.548770 ACCCGTAGAGACATCATAACGA 58.451 45.455 0.00 0.00 33.01 3.85
5314 5568 5.869753 CATCATAACGATGGAATTCCTCC 57.130 43.478 24.73 14.83 46.73 4.30
5315 5569 4.351874 TCATAACGATGGAATTCCTCCC 57.648 45.455 24.73 12.52 44.69 4.30
5316 5570 3.973973 TCATAACGATGGAATTCCTCCCT 59.026 43.478 24.73 7.51 44.69 4.20
5318 5572 0.181350 ACGATGGAATTCCTCCCTGC 59.819 55.000 24.73 7.26 44.69 4.85
5321 5575 1.659035 ATGGAATTCCTCCCTGCCCC 61.659 60.000 24.73 0.00 44.69 5.80
5322 5576 2.603580 GAATTCCTCCCTGCCCCC 59.396 66.667 0.00 0.00 0.00 5.40
5323 5577 2.204448 AATTCCTCCCTGCCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
5325 5579 1.953100 AATTCCTCCCTGCCCCCATG 61.953 60.000 0.00 0.00 0.00 3.66
5330 5584 3.996621 CCCTGCCCCCATGGTGTT 61.997 66.667 11.73 0.00 36.04 3.32
5332 5586 2.681064 CTGCCCCCATGGTGTTGG 60.681 66.667 11.73 4.24 36.04 3.77
5335 5589 2.362889 CCCCCATGGTGTTGGCTC 60.363 66.667 11.73 0.00 35.29 4.70
5336 5590 2.362889 CCCCATGGTGTTGGCTCC 60.363 66.667 11.73 0.00 35.29 4.70
5355 5852 4.315803 CTCCAACATCGTTGGTAGACTTT 58.684 43.478 21.89 0.00 40.40 2.66
5356 5853 4.062293 TCCAACATCGTTGGTAGACTTTG 58.938 43.478 21.89 0.00 40.40 2.77
5357 5854 4.062293 CCAACATCGTTGGTAGACTTTGA 58.938 43.478 16.17 0.00 34.92 2.69
5358 5855 4.152402 CCAACATCGTTGGTAGACTTTGAG 59.848 45.833 16.17 0.00 34.92 3.02
5359 5856 4.866508 ACATCGTTGGTAGACTTTGAGA 57.133 40.909 0.00 0.00 0.00 3.27
5367 5866 3.323979 TGGTAGACTTTGAGAGTGGTTCC 59.676 47.826 0.00 0.00 39.19 3.62
5378 5877 0.544357 AGTGGTTCCGTGGATCTGGA 60.544 55.000 0.00 0.00 0.00 3.86
5392 5891 2.299993 TCTGGACGAGCATCATTGTC 57.700 50.000 0.00 0.00 33.47 3.18
5405 5904 1.616374 TCATTGTCGTACAGGAGTGCA 59.384 47.619 0.00 0.00 0.00 4.57
5443 5942 6.146601 AGCCTCGTATTCTTCTAACTTACC 57.853 41.667 0.00 0.00 0.00 2.85
5454 5953 4.563140 TCTAACTTACCCATGGTGGTTC 57.437 45.455 11.73 0.00 39.91 3.62
5457 5956 1.354368 ACTTACCCATGGTGGTTCTGG 59.646 52.381 11.73 0.00 39.91 3.86
5461 5960 1.767036 CCATGGTGGTTCTGGGACA 59.233 57.895 2.57 0.00 31.35 4.02
5512 6011 0.183492 TGTGCTTTGTCCTGCCTCTT 59.817 50.000 0.00 0.00 0.00 2.85
5530 6029 4.690748 CCTCTTGCGATAAGTTTCTGTTGA 59.309 41.667 0.00 0.00 0.00 3.18
5531 6030 5.389935 CCTCTTGCGATAAGTTTCTGTTGAC 60.390 44.000 0.00 0.00 0.00 3.18
5590 6089 4.410099 AGATTCTGGTTCCATCTTTGCAA 58.590 39.130 0.00 0.00 0.00 4.08
5591 6090 4.219288 AGATTCTGGTTCCATCTTTGCAAC 59.781 41.667 0.00 0.00 0.00 4.17
5629 6149 0.038526 TCTTCGGGAGCGTTCTTCAC 60.039 55.000 0.00 0.00 0.00 3.18
5671 6192 6.116126 GGAGTTGAATGACTTTGTAGGCTAT 58.884 40.000 0.00 0.00 0.00 2.97
5707 6228 2.504367 TCTTGCTTGGGTCTTTAGTGC 58.496 47.619 0.00 0.00 0.00 4.40
5715 6236 4.112634 TGGGTCTTTAGTGCATTCCTTT 57.887 40.909 0.00 0.00 0.00 3.11
5716 6237 4.479158 TGGGTCTTTAGTGCATTCCTTTT 58.521 39.130 0.00 0.00 0.00 2.27
5717 6238 4.898861 TGGGTCTTTAGTGCATTCCTTTTT 59.101 37.500 0.00 0.00 0.00 1.94
5743 6264 4.577834 TTTTTGCGGAAAGGGTCTTTAG 57.422 40.909 1.41 0.00 0.00 1.85
5744 6265 2.943036 TTGCGGAAAGGGTCTTTAGT 57.057 45.000 0.00 0.00 0.00 2.24
5745 6266 2.178912 TGCGGAAAGGGTCTTTAGTG 57.821 50.000 0.00 0.00 0.00 2.74
5746 6267 1.418637 TGCGGAAAGGGTCTTTAGTGT 59.581 47.619 0.00 0.00 0.00 3.55
5747 6268 2.633967 TGCGGAAAGGGTCTTTAGTGTA 59.366 45.455 0.00 0.00 0.00 2.90
5748 6269 3.262405 TGCGGAAAGGGTCTTTAGTGTAT 59.738 43.478 0.00 0.00 0.00 2.29
5749 6270 4.259356 GCGGAAAGGGTCTTTAGTGTATT 58.741 43.478 0.00 0.00 0.00 1.89
5750 6271 4.331992 GCGGAAAGGGTCTTTAGTGTATTC 59.668 45.833 0.00 0.00 0.00 1.75
5751 6272 4.874396 CGGAAAGGGTCTTTAGTGTATTCC 59.126 45.833 0.00 0.00 0.00 3.01
5752 6273 5.338137 CGGAAAGGGTCTTTAGTGTATTCCT 60.338 44.000 0.00 0.00 33.35 3.36
5753 6274 6.482524 GGAAAGGGTCTTTAGTGTATTCCTT 58.517 40.000 0.00 0.00 35.17 3.36
5754 6275 6.374613 GGAAAGGGTCTTTAGTGTATTCCTTG 59.625 42.308 0.00 0.00 34.10 3.61
5755 6276 6.697641 AAGGGTCTTTAGTGTATTCCTTGA 57.302 37.500 0.00 0.00 32.79 3.02
5756 6277 6.051179 AGGGTCTTTAGTGTATTCCTTGAC 57.949 41.667 0.00 0.00 0.00 3.18
5757 6278 5.785940 AGGGTCTTTAGTGTATTCCTTGACT 59.214 40.000 0.00 0.00 0.00 3.41
5788 6309 2.294074 CGGTGGGTGTTTCTTCTCAAA 58.706 47.619 0.00 0.00 0.00 2.69
5866 6782 2.203451 AGCTGGCTGTGCTTTGCT 60.203 55.556 0.00 0.00 37.52 3.91
5909 6859 2.238898 AGGGTAGGTGTATGCAAGGAAC 59.761 50.000 0.00 0.00 0.00 3.62
5923 6873 3.190118 GCAAGGAACCTGATTCAGTTCAG 59.810 47.826 20.56 14.42 42.31 3.02
5963 6973 9.750125 AATTTAACAGTGTTTCATTTTCTCCTC 57.250 29.630 14.90 0.00 0.00 3.71
5966 6976 2.480419 AGTGTTTCATTTTCTCCTCGCG 59.520 45.455 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.802816 GTCTCTCTCGCAGAAGCAAAAA 59.197 45.455 0.00 0.00 42.27 1.94
51 52 2.224042 TGTCTCTCTCGCAGAAGCAAAA 60.224 45.455 0.00 0.00 42.27 2.44
52 53 1.341209 TGTCTCTCTCGCAGAAGCAAA 59.659 47.619 0.00 0.00 42.27 3.68
53 54 0.961753 TGTCTCTCTCGCAGAAGCAA 59.038 50.000 0.00 0.00 42.27 3.91
54 55 0.961753 TTGTCTCTCTCGCAGAAGCA 59.038 50.000 0.00 0.00 42.27 3.91
55 56 2.071688 TTTGTCTCTCTCGCAGAAGC 57.928 50.000 0.00 0.00 34.09 3.86
56 57 4.668686 GCAAATTTGTCTCTCTCGCAGAAG 60.669 45.833 19.03 0.00 34.09 2.85
57 58 3.187227 GCAAATTTGTCTCTCTCGCAGAA 59.813 43.478 19.03 0.00 34.09 3.02
58 59 2.738846 GCAAATTTGTCTCTCTCGCAGA 59.261 45.455 19.03 0.00 0.00 4.26
59 60 2.740981 AGCAAATTTGTCTCTCTCGCAG 59.259 45.455 19.03 0.00 0.00 5.18
60 61 2.771089 AGCAAATTTGTCTCTCTCGCA 58.229 42.857 19.03 0.00 0.00 5.10
61 62 3.820777 AAGCAAATTTGTCTCTCTCGC 57.179 42.857 19.03 1.86 0.00 5.03
62 63 6.653273 TGATAAGCAAATTTGTCTCTCTCG 57.347 37.500 19.03 0.00 0.00 4.04
63 64 7.983307 ACATGATAAGCAAATTTGTCTCTCTC 58.017 34.615 19.03 12.94 0.00 3.20
64 65 7.934855 ACATGATAAGCAAATTTGTCTCTCT 57.065 32.000 19.03 4.88 0.00 3.10
65 66 8.341173 CCTACATGATAAGCAAATTTGTCTCTC 58.659 37.037 19.03 15.05 0.00 3.20
66 67 7.201767 GCCTACATGATAAGCAAATTTGTCTCT 60.202 37.037 19.03 5.59 0.00 3.10
67 68 6.914757 GCCTACATGATAAGCAAATTTGTCTC 59.085 38.462 19.03 11.00 0.00 3.36
68 69 6.377996 TGCCTACATGATAAGCAAATTTGTCT 59.622 34.615 19.03 13.38 0.00 3.41
69 70 6.473455 GTGCCTACATGATAAGCAAATTTGTC 59.527 38.462 19.03 11.45 34.79 3.18
70 71 6.071447 TGTGCCTACATGATAAGCAAATTTGT 60.071 34.615 19.03 3.40 34.79 2.83
71 72 6.331845 TGTGCCTACATGATAAGCAAATTTG 58.668 36.000 14.03 14.03 34.79 2.32
72 73 6.528537 TGTGCCTACATGATAAGCAAATTT 57.471 33.333 0.00 0.00 34.79 1.82
73 74 6.720112 ATGTGCCTACATGATAAGCAAATT 57.280 33.333 0.00 0.00 45.54 1.82
74 75 8.413309 AATATGTGCCTACATGATAAGCAAAT 57.587 30.769 0.00 6.22 46.63 2.32
75 76 7.822161 AATATGTGCCTACATGATAAGCAAA 57.178 32.000 0.00 0.00 46.63 3.68
76 77 7.650890 CAAATATGTGCCTACATGATAAGCAA 58.349 34.615 0.00 0.00 46.63 3.91
77 78 6.294120 GCAAATATGTGCCTACATGATAAGCA 60.294 38.462 6.61 0.00 46.63 3.91
78 79 6.072286 AGCAAATATGTGCCTACATGATAAGC 60.072 38.462 14.50 0.00 46.63 3.09
79 80 7.444629 AGCAAATATGTGCCTACATGATAAG 57.555 36.000 14.50 0.00 46.63 1.73
80 81 7.822161 AAGCAAATATGTGCCTACATGATAA 57.178 32.000 14.50 0.00 46.63 1.75
81 82 7.822161 AAAGCAAATATGTGCCTACATGATA 57.178 32.000 14.50 0.00 46.63 2.15
82 83 6.720112 AAAGCAAATATGTGCCTACATGAT 57.280 33.333 14.50 0.00 46.63 2.45
83 84 6.238731 GCTAAAGCAAATATGTGCCTACATGA 60.239 38.462 14.50 0.00 46.14 3.07
84 85 5.916883 GCTAAAGCAAATATGTGCCTACATG 59.083 40.000 14.50 2.12 46.14 3.21
85 86 5.277974 CGCTAAAGCAAATATGTGCCTACAT 60.278 40.000 14.50 0.00 46.14 2.29
86 87 4.035091 CGCTAAAGCAAATATGTGCCTACA 59.965 41.667 14.50 0.00 46.14 2.74
87 88 4.272504 TCGCTAAAGCAAATATGTGCCTAC 59.727 41.667 14.50 0.00 46.14 3.18
88 89 4.447290 TCGCTAAAGCAAATATGTGCCTA 58.553 39.130 14.50 5.77 46.14 3.93
89 90 3.278574 TCGCTAAAGCAAATATGTGCCT 58.721 40.909 14.50 4.86 46.14 4.75
90 91 3.312421 TCTCGCTAAAGCAAATATGTGCC 59.688 43.478 14.50 0.00 46.14 5.01
91 92 4.034510 ACTCTCGCTAAAGCAAATATGTGC 59.965 41.667 10.09 10.09 45.28 4.57
92 93 5.555256 CGACTCTCGCTAAAGCAAATATGTG 60.555 44.000 2.44 0.00 42.21 3.21
93 94 4.504461 CGACTCTCGCTAAAGCAAATATGT 59.496 41.667 2.44 0.00 42.21 2.29
94 95 4.999484 CGACTCTCGCTAAAGCAAATATG 58.001 43.478 2.44 0.00 42.21 1.78
108 109 1.209128 AAACACAACAGCGACTCTCG 58.791 50.000 0.00 0.00 43.89 4.04
109 110 3.675467 AAAAACACAACAGCGACTCTC 57.325 42.857 0.00 0.00 0.00 3.20
130 131 0.037326 ATCTGTGCGCCTCTCGAAAA 60.037 50.000 4.18 0.00 41.67 2.29
145 146 2.005451 CCTCCACGAGAAGCAAATCTG 58.995 52.381 0.00 0.00 0.00 2.90
152 153 1.739562 CTGTGCCTCCACGAGAAGC 60.740 63.158 0.00 0.00 45.04 3.86
159 160 1.109323 AAGCAAACCTGTGCCTCCAC 61.109 55.000 0.00 0.00 46.14 4.02
161 162 1.527433 GGAAGCAAACCTGTGCCTCC 61.527 60.000 0.00 0.00 45.43 4.30
246 256 1.177401 GGAAGGAAACATGTGCCTCC 58.823 55.000 17.99 14.96 0.00 4.30
276 394 5.163854 CGTCGGCATTTTCAAAACTAGATCT 60.164 40.000 0.00 0.00 0.00 2.75
318 436 0.305617 GTCAAAACCACGGTCCGTTC 59.694 55.000 15.97 0.00 38.32 3.95
324 442 1.711060 CTGTGCGTCAAAACCACGGT 61.711 55.000 0.00 0.00 37.74 4.83
386 504 6.937436 TTTCACAACCTAGAAGTTTTCCTC 57.063 37.500 0.00 0.00 0.00 3.71
396 515 3.569194 TGCCACTTTTCACAACCTAGA 57.431 42.857 0.00 0.00 0.00 2.43
398 517 3.320541 CCATTGCCACTTTTCACAACCTA 59.679 43.478 0.00 0.00 0.00 3.08
399 518 2.102925 CCATTGCCACTTTTCACAACCT 59.897 45.455 0.00 0.00 0.00 3.50
434 553 9.314321 TGAATAAAGGCGATGTTTTGTTTAAAA 57.686 25.926 0.00 0.00 33.57 1.52
435 554 8.873215 TGAATAAAGGCGATGTTTTGTTTAAA 57.127 26.923 0.00 0.00 0.00 1.52
436 555 9.482627 AATGAATAAAGGCGATGTTTTGTTTAA 57.517 25.926 0.00 0.00 0.00 1.52
437 556 8.920665 CAATGAATAAAGGCGATGTTTTGTTTA 58.079 29.630 0.00 0.00 0.00 2.01
438 557 7.095271 CCAATGAATAAAGGCGATGTTTTGTTT 60.095 33.333 0.00 0.00 0.00 2.83
439 558 6.368516 CCAATGAATAAAGGCGATGTTTTGTT 59.631 34.615 0.00 0.00 0.00 2.83
440 559 5.868801 CCAATGAATAAAGGCGATGTTTTGT 59.131 36.000 0.00 0.00 0.00 2.83
441 560 6.098679 TCCAATGAATAAAGGCGATGTTTTG 58.901 36.000 0.00 0.00 0.00 2.44
442 561 6.279513 TCCAATGAATAAAGGCGATGTTTT 57.720 33.333 0.00 0.00 0.00 2.43
443 562 5.913137 TCCAATGAATAAAGGCGATGTTT 57.087 34.783 0.00 0.00 0.00 2.83
444 563 5.913137 TTCCAATGAATAAAGGCGATGTT 57.087 34.783 0.00 0.00 0.00 2.71
445 564 5.913137 TTTCCAATGAATAAAGGCGATGT 57.087 34.783 0.00 0.00 0.00 3.06
446 565 7.920151 TGTTATTTCCAATGAATAAAGGCGATG 59.080 33.333 0.00 0.00 32.50 3.84
447 566 8.006298 TGTTATTTCCAATGAATAAAGGCGAT 57.994 30.769 0.00 0.00 32.50 4.58
448 567 7.122055 ACTGTTATTTCCAATGAATAAAGGCGA 59.878 33.333 0.00 0.00 32.50 5.54
449 568 7.257722 ACTGTTATTTCCAATGAATAAAGGCG 58.742 34.615 0.00 0.00 32.50 5.52
456 575 8.956426 ACGATGTAACTGTTATTTCCAATGAAT 58.044 29.630 3.23 0.00 0.00 2.57
457 576 8.330466 ACGATGTAACTGTTATTTCCAATGAA 57.670 30.769 3.23 0.00 0.00 2.57
458 577 7.915293 ACGATGTAACTGTTATTTCCAATGA 57.085 32.000 3.23 0.00 0.00 2.57
503 622 9.300681 AGATTGTTTTGAGAAACCTATGAATGA 57.699 29.630 0.15 0.00 43.57 2.57
504 623 9.565213 GAGATTGTTTTGAGAAACCTATGAATG 57.435 33.333 0.15 0.00 43.57 2.67
505 624 9.525826 AGAGATTGTTTTGAGAAACCTATGAAT 57.474 29.630 0.15 0.00 43.57 2.57
506 625 8.924511 AGAGATTGTTTTGAGAAACCTATGAA 57.075 30.769 0.15 0.00 43.57 2.57
507 626 9.658799 CTAGAGATTGTTTTGAGAAACCTATGA 57.341 33.333 0.15 0.00 43.57 2.15
508 627 9.442047 ACTAGAGATTGTTTTGAGAAACCTATG 57.558 33.333 0.00 0.00 43.57 2.23
509 628 9.660180 GACTAGAGATTGTTTTGAGAAACCTAT 57.340 33.333 0.00 0.00 43.57 2.57
510 629 8.647796 TGACTAGAGATTGTTTTGAGAAACCTA 58.352 33.333 0.00 0.00 43.57 3.08
511 630 7.442666 GTGACTAGAGATTGTTTTGAGAAACCT 59.557 37.037 0.00 0.00 43.57 3.50
512 631 7.569591 CGTGACTAGAGATTGTTTTGAGAAACC 60.570 40.741 0.00 0.00 43.57 3.27
513 632 7.284351 CGTGACTAGAGATTGTTTTGAGAAAC 58.716 38.462 0.00 0.00 44.29 2.78
514 633 6.423905 CCGTGACTAGAGATTGTTTTGAGAAA 59.576 38.462 0.00 0.00 0.00 2.52
515 634 5.926542 CCGTGACTAGAGATTGTTTTGAGAA 59.073 40.000 0.00 0.00 0.00 2.87
516 635 5.243060 TCCGTGACTAGAGATTGTTTTGAGA 59.757 40.000 0.00 0.00 0.00 3.27
517 636 5.470368 TCCGTGACTAGAGATTGTTTTGAG 58.530 41.667 0.00 0.00 0.00 3.02
518 637 5.462530 TCCGTGACTAGAGATTGTTTTGA 57.537 39.130 0.00 0.00 0.00 2.69
519 638 6.539649 TTTCCGTGACTAGAGATTGTTTTG 57.460 37.500 0.00 0.00 0.00 2.44
520 639 7.745620 ATTTTCCGTGACTAGAGATTGTTTT 57.254 32.000 0.00 0.00 0.00 2.43
521 640 7.745620 AATTTTCCGTGACTAGAGATTGTTT 57.254 32.000 0.00 0.00 0.00 2.83
522 641 7.745620 AAATTTTCCGTGACTAGAGATTGTT 57.254 32.000 0.00 0.00 0.00 2.83
523 642 7.064728 GCTAAATTTTCCGTGACTAGAGATTGT 59.935 37.037 0.00 0.00 0.00 2.71
524 643 7.278868 AGCTAAATTTTCCGTGACTAGAGATTG 59.721 37.037 0.00 0.00 0.00 2.67
525 644 7.331791 AGCTAAATTTTCCGTGACTAGAGATT 58.668 34.615 0.00 0.00 0.00 2.40
526 645 6.879400 AGCTAAATTTTCCGTGACTAGAGAT 58.121 36.000 0.00 0.00 0.00 2.75
527 646 6.282199 AGCTAAATTTTCCGTGACTAGAGA 57.718 37.500 0.00 0.00 0.00 3.10
528 647 8.649973 ATTAGCTAAATTTTCCGTGACTAGAG 57.350 34.615 10.85 0.00 0.00 2.43
529 648 8.475639 AGATTAGCTAAATTTTCCGTGACTAGA 58.524 33.333 10.85 0.00 0.00 2.43
530 649 8.649973 AGATTAGCTAAATTTTCCGTGACTAG 57.350 34.615 10.85 0.00 0.00 2.57
531 650 9.745880 CTAGATTAGCTAAATTTTCCGTGACTA 57.254 33.333 10.85 0.77 0.00 2.59
532 651 8.649973 CTAGATTAGCTAAATTTTCCGTGACT 57.350 34.615 10.85 0.00 0.00 3.41
546 665 8.008586 TTGCTCACAAACTTGCTAGATTAGCTA 61.009 37.037 1.04 0.00 41.82 3.32
547 666 7.242800 TTGCTCACAAACTTGCTAGATTAGCT 61.243 38.462 1.04 0.00 41.82 3.32
548 667 5.106555 TTGCTCACAAACTTGCTAGATTAGC 60.107 40.000 1.04 3.58 41.73 3.09
549 668 6.148480 AGTTGCTCACAAACTTGCTAGATTAG 59.852 38.462 1.04 0.00 37.58 1.73
550 669 5.997746 AGTTGCTCACAAACTTGCTAGATTA 59.002 36.000 1.04 0.00 37.58 1.75
551 670 4.823989 AGTTGCTCACAAACTTGCTAGATT 59.176 37.500 1.04 0.00 37.58 2.40
552 671 4.392940 AGTTGCTCACAAACTTGCTAGAT 58.607 39.130 1.04 0.00 37.58 1.98
553 672 3.808728 AGTTGCTCACAAACTTGCTAGA 58.191 40.909 1.04 0.00 37.58 2.43
554 673 4.558538 AAGTTGCTCACAAACTTGCTAG 57.441 40.909 0.99 0.00 37.58 3.42
555 674 4.981806 AAAGTTGCTCACAAACTTGCTA 57.018 36.364 2.56 0.00 37.58 3.49
556 675 3.874392 AAAGTTGCTCACAAACTTGCT 57.126 38.095 2.56 0.00 37.58 3.91
557 676 6.413269 CAAATAAAGTTGCTCACAAACTTGC 58.587 36.000 2.56 0.00 37.58 4.01
577 696 9.709495 TTTGAGCATTGTAATAGAAAAGCAAAT 57.291 25.926 0.00 0.00 0.00 2.32
578 697 9.539825 TTTTGAGCATTGTAATAGAAAAGCAAA 57.460 25.926 0.00 0.00 0.00 3.68
579 698 9.709495 ATTTTGAGCATTGTAATAGAAAAGCAA 57.291 25.926 0.00 0.00 0.00 3.91
580 699 9.709495 AATTTTGAGCATTGTAATAGAAAAGCA 57.291 25.926 0.00 0.00 0.00 3.91
581 700 9.962759 CAATTTTGAGCATTGTAATAGAAAAGC 57.037 29.630 0.00 0.00 0.00 3.51
587 706 8.895845 GCGTATCAATTTTGAGCATTGTAATAG 58.104 33.333 0.00 0.00 41.08 1.73
588 707 7.585936 CGCGTATCAATTTTGAGCATTGTAATA 59.414 33.333 0.00 0.00 41.08 0.98
589 708 6.414694 CGCGTATCAATTTTGAGCATTGTAAT 59.585 34.615 0.00 0.00 41.08 1.89
590 709 5.736824 CGCGTATCAATTTTGAGCATTGTAA 59.263 36.000 0.00 0.00 41.08 2.41
591 710 5.262422 CGCGTATCAATTTTGAGCATTGTA 58.738 37.500 0.00 0.00 41.08 2.41
592 711 4.097714 CGCGTATCAATTTTGAGCATTGT 58.902 39.130 0.00 0.00 41.08 2.71
593 712 3.483196 CCGCGTATCAATTTTGAGCATTG 59.517 43.478 4.92 0.00 41.08 2.82
594 713 3.376859 TCCGCGTATCAATTTTGAGCATT 59.623 39.130 4.92 0.00 41.08 3.56
595 714 2.942376 TCCGCGTATCAATTTTGAGCAT 59.058 40.909 4.92 0.00 41.08 3.79
596 715 2.351455 TCCGCGTATCAATTTTGAGCA 58.649 42.857 4.92 0.00 41.08 4.26
597 716 3.398954 TTCCGCGTATCAATTTTGAGC 57.601 42.857 4.92 0.00 41.08 4.26
598 717 5.169561 CGATTTTCCGCGTATCAATTTTGAG 59.830 40.000 4.92 0.00 41.08 3.02
599 718 5.025190 CGATTTTCCGCGTATCAATTTTGA 58.975 37.500 4.92 0.00 42.14 2.69
600 719 4.316377 GCGATTTTCCGCGTATCAATTTTG 60.316 41.667 4.92 0.00 45.86 2.44
601 720 3.789224 GCGATTTTCCGCGTATCAATTTT 59.211 39.130 4.92 0.00 45.86 1.82
602 721 3.359654 GCGATTTTCCGCGTATCAATTT 58.640 40.909 4.92 0.00 45.86 1.82
603 722 2.981875 GCGATTTTCCGCGTATCAATT 58.018 42.857 4.92 0.00 45.86 2.32
604 723 2.663279 GCGATTTTCCGCGTATCAAT 57.337 45.000 4.92 0.00 45.86 2.57
613 732 0.375454 TTATGGCGTGCGATTTTCCG 59.625 50.000 0.00 0.00 0.00 4.30
614 733 2.553079 TTTATGGCGTGCGATTTTCC 57.447 45.000 0.00 0.00 0.00 3.13
615 734 5.513495 TGTTATTTTATGGCGTGCGATTTTC 59.487 36.000 0.00 0.00 0.00 2.29
616 735 5.403246 TGTTATTTTATGGCGTGCGATTTT 58.597 33.333 0.00 0.00 0.00 1.82
617 736 4.987832 TGTTATTTTATGGCGTGCGATTT 58.012 34.783 0.00 0.00 0.00 2.17
618 737 4.624336 TGTTATTTTATGGCGTGCGATT 57.376 36.364 0.00 0.00 0.00 3.34
619 738 4.624336 TTGTTATTTTATGGCGTGCGAT 57.376 36.364 0.00 0.00 0.00 4.58
620 739 4.095036 TGATTGTTATTTTATGGCGTGCGA 59.905 37.500 0.00 0.00 0.00 5.10
621 740 4.346970 TGATTGTTATTTTATGGCGTGCG 58.653 39.130 0.00 0.00 0.00 5.34
622 741 5.976534 TGATGATTGTTATTTTATGGCGTGC 59.023 36.000 0.00 0.00 0.00 5.34
623 742 7.416817 TCTGATGATTGTTATTTTATGGCGTG 58.583 34.615 0.00 0.00 0.00 5.34
624 743 7.566760 TCTGATGATTGTTATTTTATGGCGT 57.433 32.000 0.00 0.00 0.00 5.68
625 744 8.745837 GTTTCTGATGATTGTTATTTTATGGCG 58.254 33.333 0.00 0.00 0.00 5.69
626 745 9.807649 AGTTTCTGATGATTGTTATTTTATGGC 57.192 29.630 0.00 0.00 0.00 4.40
629 748 9.807649 GGCAGTTTCTGATGATTGTTATTTTAT 57.192 29.630 0.66 0.00 32.44 1.40
630 749 8.801299 TGGCAGTTTCTGATGATTGTTATTTTA 58.199 29.630 0.66 0.00 32.44 1.52
631 750 7.599998 GTGGCAGTTTCTGATGATTGTTATTTT 59.400 33.333 0.66 0.00 32.44 1.82
632 751 7.092716 GTGGCAGTTTCTGATGATTGTTATTT 58.907 34.615 0.66 0.00 32.44 1.40
633 752 6.350445 GGTGGCAGTTTCTGATGATTGTTATT 60.350 38.462 0.66 0.00 32.44 1.40
634 753 5.126061 GGTGGCAGTTTCTGATGATTGTTAT 59.874 40.000 0.66 0.00 32.44 1.89
635 754 4.458989 GGTGGCAGTTTCTGATGATTGTTA 59.541 41.667 0.66 0.00 32.44 2.41
636 755 3.256631 GGTGGCAGTTTCTGATGATTGTT 59.743 43.478 0.66 0.00 32.44 2.83
637 756 2.821969 GGTGGCAGTTTCTGATGATTGT 59.178 45.455 0.66 0.00 32.44 2.71
638 757 2.821378 TGGTGGCAGTTTCTGATGATTG 59.179 45.455 0.66 0.00 32.44 2.67
639 758 2.821969 GTGGTGGCAGTTTCTGATGATT 59.178 45.455 0.66 0.00 32.44 2.57
640 759 2.440409 GTGGTGGCAGTTTCTGATGAT 58.560 47.619 0.66 0.00 32.44 2.45
641 760 1.545428 GGTGGTGGCAGTTTCTGATGA 60.545 52.381 0.66 0.00 32.44 2.92
642 761 0.883833 GGTGGTGGCAGTTTCTGATG 59.116 55.000 0.66 0.00 32.44 3.07
643 762 0.478072 TGGTGGTGGCAGTTTCTGAT 59.522 50.000 0.66 0.00 32.44 2.90
644 763 0.465460 GTGGTGGTGGCAGTTTCTGA 60.465 55.000 0.66 0.00 32.44 3.27
645 764 0.466189 AGTGGTGGTGGCAGTTTCTG 60.466 55.000 0.00 0.00 34.12 3.02
646 765 0.179018 GAGTGGTGGTGGCAGTTTCT 60.179 55.000 0.00 0.00 0.00 2.52
647 766 1.172812 GGAGTGGTGGTGGCAGTTTC 61.173 60.000 0.00 0.00 0.00 2.78
648 767 1.152756 GGAGTGGTGGTGGCAGTTT 60.153 57.895 0.00 0.00 0.00 2.66
649 768 2.515901 GGAGTGGTGGTGGCAGTT 59.484 61.111 0.00 0.00 0.00 3.16
650 769 3.570212 GGGAGTGGTGGTGGCAGT 61.570 66.667 0.00 0.00 0.00 4.40
651 770 4.704833 CGGGAGTGGTGGTGGCAG 62.705 72.222 0.00 0.00 0.00 4.85
654 773 4.704833 CTGCGGGAGTGGTGGTGG 62.705 72.222 0.00 0.00 0.00 4.61
655 774 2.469465 ATTCTGCGGGAGTGGTGGTG 62.469 60.000 0.00 0.00 0.00 4.17
656 775 2.224159 ATTCTGCGGGAGTGGTGGT 61.224 57.895 0.00 0.00 0.00 4.16
657 776 1.746615 CATTCTGCGGGAGTGGTGG 60.747 63.158 0.00 0.00 0.00 4.61
658 777 1.003355 ACATTCTGCGGGAGTGGTG 60.003 57.895 0.00 0.00 36.20 4.17
659 778 1.296715 GACATTCTGCGGGAGTGGT 59.703 57.895 0.00 0.00 36.20 4.16
660 779 1.450312 GGACATTCTGCGGGAGTGG 60.450 63.158 0.00 0.00 36.20 4.00
661 780 0.460987 GAGGACATTCTGCGGGAGTG 60.461 60.000 0.00 0.00 37.63 3.51
662 781 1.617947 GGAGGACATTCTGCGGGAGT 61.618 60.000 0.00 0.00 0.00 3.85
663 782 1.144936 GGAGGACATTCTGCGGGAG 59.855 63.158 0.00 0.00 0.00 4.30
664 783 0.982852 ATGGAGGACATTCTGCGGGA 60.983 55.000 0.00 0.00 35.97 5.14
665 784 0.107017 AATGGAGGACATTCTGCGGG 60.107 55.000 0.00 0.00 46.67 6.13
666 785 3.483954 AATGGAGGACATTCTGCGG 57.516 52.632 0.00 0.00 46.67 5.69
673 792 6.725364 ACAACTAATGAAGAATGGAGGACAT 58.275 36.000 0.00 0.00 43.07 3.06
674 793 6.126863 ACAACTAATGAAGAATGGAGGACA 57.873 37.500 0.00 0.00 0.00 4.02
675 794 6.173339 TGACAACTAATGAAGAATGGAGGAC 58.827 40.000 0.00 0.00 0.00 3.85
676 795 6.373005 TGACAACTAATGAAGAATGGAGGA 57.627 37.500 0.00 0.00 0.00 3.71
677 796 5.587844 CCTGACAACTAATGAAGAATGGAGG 59.412 44.000 0.00 0.00 0.00 4.30
678 797 5.587844 CCCTGACAACTAATGAAGAATGGAG 59.412 44.000 0.00 0.00 0.00 3.86
679 798 5.500234 CCCTGACAACTAATGAAGAATGGA 58.500 41.667 0.00 0.00 0.00 3.41
680 799 4.641989 CCCCTGACAACTAATGAAGAATGG 59.358 45.833 0.00 0.00 0.00 3.16
681 800 5.500234 TCCCCTGACAACTAATGAAGAATG 58.500 41.667 0.00 0.00 0.00 2.67
682 801 5.779241 TCCCCTGACAACTAATGAAGAAT 57.221 39.130 0.00 0.00 0.00 2.40
683 802 5.576563 TTCCCCTGACAACTAATGAAGAA 57.423 39.130 0.00 0.00 0.00 2.52
684 803 5.073144 ACTTTCCCCTGACAACTAATGAAGA 59.927 40.000 0.00 0.00 0.00 2.87
685 804 5.316987 ACTTTCCCCTGACAACTAATGAAG 58.683 41.667 0.00 0.00 0.00 3.02
686 805 5.313712 GACTTTCCCCTGACAACTAATGAA 58.686 41.667 0.00 0.00 0.00 2.57
687 806 4.263331 GGACTTTCCCCTGACAACTAATGA 60.263 45.833 0.00 0.00 0.00 2.57
688 807 4.010349 GGACTTTCCCCTGACAACTAATG 58.990 47.826 0.00 0.00 0.00 1.90
689 808 3.916989 AGGACTTTCCCCTGACAACTAAT 59.083 43.478 0.00 0.00 37.19 1.73
690 809 3.323775 AGGACTTTCCCCTGACAACTAA 58.676 45.455 0.00 0.00 37.19 2.24
691 810 2.986050 AGGACTTTCCCCTGACAACTA 58.014 47.619 0.00 0.00 37.19 2.24
696 815 1.420138 TCACAAGGACTTTCCCCTGAC 59.580 52.381 0.00 0.00 37.19 3.51
719 838 4.448537 TTTTTGGATAACAGATTGGCCG 57.551 40.909 0.00 0.00 0.00 6.13
925 1063 3.534056 CGGGGTAGGTAGGGCACG 61.534 72.222 0.00 0.00 0.00 5.34
1172 1310 9.296400 CTTAGCTAACAGAACAAGAGATAAGAC 57.704 37.037 0.86 0.00 38.01 3.01
1218 1359 2.646250 CACGGAGGCGTAAACTTTTTG 58.354 47.619 0.00 0.00 0.00 2.44
1219 1360 1.002142 GCACGGAGGCGTAAACTTTTT 60.002 47.619 0.00 0.00 0.00 1.94
1273 1414 7.404203 CCAAATAGACTAAAAACCCGTAATCG 58.596 38.462 0.00 0.00 0.00 3.34
1282 1423 4.698780 AGCCGACCCAAATAGACTAAAAAC 59.301 41.667 0.00 0.00 0.00 2.43
1430 1576 5.768317 TGTTCCATTTCTTTCGACCATTTC 58.232 37.500 0.00 0.00 0.00 2.17
1449 1601 4.949856 TCCAGAGGCCTGAAAAATATGTTC 59.050 41.667 12.00 0.00 43.02 3.18
1512 1665 4.222336 TGTGGAAACCCAGATTCAACAAT 58.778 39.130 0.00 0.00 37.69 2.71
1554 1707 1.777941 AGGGCACTACTAGTACCAGC 58.222 55.000 7.64 8.53 33.15 4.85
1558 1711 5.383476 TGGAGAATAGGGCACTACTAGTAC 58.617 45.833 0.00 0.00 30.59 2.73
1559 1712 5.658198 TGGAGAATAGGGCACTACTAGTA 57.342 43.478 0.00 1.89 30.59 1.82
1561 1714 4.221703 CCATGGAGAATAGGGCACTACTAG 59.778 50.000 5.56 0.00 30.59 2.57
1563 1716 2.975489 CCATGGAGAATAGGGCACTACT 59.025 50.000 5.56 0.00 30.59 2.57
1564 1717 2.039084 CCCATGGAGAATAGGGCACTAC 59.961 54.545 15.22 0.00 33.91 2.73
1565 1718 2.338809 CCCATGGAGAATAGGGCACTA 58.661 52.381 15.22 0.00 33.91 2.74
1566 1719 1.143813 CCCATGGAGAATAGGGCACT 58.856 55.000 15.22 0.00 33.91 4.40
1567 1720 3.733709 CCCATGGAGAATAGGGCAC 57.266 57.895 15.22 0.00 33.91 5.01
1598 1751 2.496899 TTGCAAATCTCCCTCTGGTC 57.503 50.000 0.00 0.00 0.00 4.02
1650 1803 4.169856 AGCAAAATGATACCCCCTCCATAA 59.830 41.667 0.00 0.00 0.00 1.90
1657 1810 3.365472 ACAGAAGCAAAATGATACCCCC 58.635 45.455 0.00 0.00 0.00 5.40
1689 1842 7.093858 TGCAGATTTTCAACAACCATATGATGA 60.094 33.333 3.65 0.00 31.24 2.92
1693 1846 5.808540 CCTGCAGATTTTCAACAACCATATG 59.191 40.000 17.39 0.00 0.00 1.78
1698 1851 3.181476 ACACCTGCAGATTTTCAACAACC 60.181 43.478 17.39 0.00 0.00 3.77
1703 1856 5.735922 GCAACTAACACCTGCAGATTTTCAA 60.736 40.000 17.39 0.00 36.09 2.69
1727 1880 0.523072 CCTTTCCACTTGCCATCACG 59.477 55.000 0.00 0.00 0.00 4.35
1742 1895 1.815003 GTAGTTGCTGCATGCTCCTTT 59.185 47.619 20.33 2.97 43.37 3.11
1826 1979 1.134401 ACTGATGTATCCAAGCCACCG 60.134 52.381 0.00 0.00 0.00 4.94
2039 2201 6.583806 CACAACATTGCAGATTAAAGGAAGAC 59.416 38.462 0.00 0.00 0.00 3.01
2072 2234 7.268586 CACTTATCAAGCAGGACATAGTTAGT 58.731 38.462 0.00 0.00 0.00 2.24
2075 2237 4.878397 GCACTTATCAAGCAGGACATAGTT 59.122 41.667 0.00 0.00 0.00 2.24
2200 2367 2.851195 AGCCAGAGACAACAAACGAAT 58.149 42.857 0.00 0.00 0.00 3.34
2206 2373 1.881973 GCATGAAGCCAGAGACAACAA 59.118 47.619 0.00 0.00 37.23 2.83
2253 2420 9.550811 CTCCGTAAAAAGGTATGATACAAAAAC 57.449 33.333 4.83 0.00 0.00 2.43
2254 2421 9.287373 ACTCCGTAAAAAGGTATGATACAAAAA 57.713 29.630 4.83 0.00 0.00 1.94
2272 2439 9.715121 ACTGATAGAAAACAAAATACTCCGTAA 57.285 29.630 0.00 0.00 0.00 3.18
2345 2512 4.318332 TGAGCTTAACTGATGGTTCACTG 58.682 43.478 0.00 0.00 39.17 3.66
2381 2549 4.290985 TCCTTCCAATTCAATGTCACCCTA 59.709 41.667 0.00 0.00 0.00 3.53
2744 2912 9.632638 AAGTGACAGCAACCTTATATAAATGAT 57.367 29.630 0.00 0.00 0.00 2.45
2872 3049 9.639601 GACTTCCAGGGAACAAATAAAATAAAG 57.360 33.333 0.00 0.00 0.00 1.85
2968 3145 5.775268 TGAATATTTCATCCATCCCACCAA 58.225 37.500 0.00 0.00 34.08 3.67
3063 3240 8.308931 CAACCATTGCCTGCAATAAAGATATAT 58.691 33.333 16.35 0.00 43.92 0.86
3166 3343 8.984891 TTAACATTTCCATGAAAAGCAGTATG 57.015 30.769 0.00 0.00 35.11 2.39
3167 3344 9.590451 CATTAACATTTCCATGAAAAGCAGTAT 57.410 29.630 0.00 0.00 35.11 2.12
3168 3345 8.584157 ACATTAACATTTCCATGAAAAGCAGTA 58.416 29.630 0.00 0.00 35.11 2.74
3169 3346 7.385752 CACATTAACATTTCCATGAAAAGCAGT 59.614 33.333 0.00 0.00 35.11 4.40
3170 3347 7.148540 CCACATTAACATTTCCATGAAAAGCAG 60.149 37.037 0.00 0.00 35.11 4.24
3171 3348 6.649973 CCACATTAACATTTCCATGAAAAGCA 59.350 34.615 0.00 0.00 35.11 3.91
3172 3349 6.092533 CCCACATTAACATTTCCATGAAAAGC 59.907 38.462 0.00 0.00 35.11 3.51
3173 3350 6.092533 GCCCACATTAACATTTCCATGAAAAG 59.907 38.462 0.00 0.00 35.11 2.27
3174 3351 5.936956 GCCCACATTAACATTTCCATGAAAA 59.063 36.000 0.00 0.00 35.11 2.29
3175 3352 5.012458 TGCCCACATTAACATTTCCATGAAA 59.988 36.000 0.00 0.00 35.94 2.69
3193 3370 0.107312 AGCATCAGATGACTGCCCAC 60.107 55.000 15.12 0.00 43.17 4.61
3421 3598 4.666512 AGGCATCAACAAGACAATAGGTT 58.333 39.130 0.00 0.00 0.00 3.50
3477 3654 7.114866 TGTACGATATGTATCCTTCAAACCA 57.885 36.000 0.00 0.00 35.02 3.67
3483 3660 9.275231 CGAATTACTGTACGATATGTATCCTTC 57.725 37.037 0.00 0.00 35.02 3.46
3493 3670 7.536281 GCATCATGTACGAATTACTGTACGATA 59.464 37.037 3.73 0.96 42.99 2.92
3497 3674 5.457799 ACGCATCATGTACGAATTACTGTAC 59.542 40.000 10.77 7.73 41.00 2.90
3524 3702 5.389202 CGAAGATTACTCGATGGCATCAATG 60.389 44.000 25.88 16.69 0.00 2.82
3770 3983 7.002276 AGTAAAAAGGGTACACTGCAGTAAAT 58.998 34.615 21.20 10.81 0.00 1.40
3804 4018 2.629137 TGCAGCAAAGATGAACCATTGT 59.371 40.909 0.00 0.00 0.00 2.71
3922 4137 8.195436 CCTAGTTTAGAATAATCGTGTCCAGAA 58.805 37.037 0.00 0.00 0.00 3.02
3944 4159 0.999406 CCACGATTCAACACGCCTAG 59.001 55.000 0.00 0.00 0.00 3.02
3950 4165 2.419673 TCATCATGCCACGATTCAACAC 59.580 45.455 0.00 0.00 0.00 3.32
4110 4325 3.007398 CCACCTAGAGATAGTTGATGGCC 59.993 52.174 0.00 0.00 0.00 5.36
4115 4330 7.355101 ACATAAGTCCACCTAGAGATAGTTGA 58.645 38.462 0.00 0.00 0.00 3.18
4118 4333 9.303116 CATAACATAAGTCCACCTAGAGATAGT 57.697 37.037 0.00 0.00 0.00 2.12
4209 4425 5.942325 AAAACAATACACGAACAAAGTGC 57.058 34.783 0.00 0.00 42.94 4.40
4233 4449 9.090692 GCATGATATTCAGCAAAAATTGTAGTT 57.909 29.630 0.00 0.00 0.00 2.24
4234 4450 7.433131 CGCATGATATTCAGCAAAAATTGTAGT 59.567 33.333 0.00 0.00 0.00 2.73
4235 4451 7.433131 ACGCATGATATTCAGCAAAAATTGTAG 59.567 33.333 0.00 0.00 0.00 2.74
4237 4453 6.035220 CACGCATGATATTCAGCAAAAATTGT 59.965 34.615 0.00 0.00 0.00 2.71
4238 4454 6.253942 TCACGCATGATATTCAGCAAAAATTG 59.746 34.615 0.00 0.00 0.00 2.32
4251 4468 6.263842 AGTTCCAATGATTTCACGCATGATAT 59.736 34.615 0.00 0.00 33.85 1.63
4252 4469 5.589855 AGTTCCAATGATTTCACGCATGATA 59.410 36.000 0.00 0.00 33.85 2.15
4253 4470 4.400251 AGTTCCAATGATTTCACGCATGAT 59.600 37.500 0.00 0.00 33.85 2.45
4254 4471 3.758023 AGTTCCAATGATTTCACGCATGA 59.242 39.130 0.00 0.00 0.00 3.07
4498 4716 5.720041 AGAAGTAGGAACACCAGCAACTATA 59.280 40.000 0.00 0.00 0.00 1.31
4504 4722 4.093743 TGATAGAAGTAGGAACACCAGCA 58.906 43.478 0.00 0.00 0.00 4.41
4510 4728 6.839124 TTACCGTTGATAGAAGTAGGAACA 57.161 37.500 0.00 0.00 0.00 3.18
4513 4731 7.778853 AGATCTTTACCGTTGATAGAAGTAGGA 59.221 37.037 0.00 0.00 0.00 2.94
4715 4933 2.202797 CCACTGCATCGTCTCCCG 60.203 66.667 0.00 0.00 38.13 5.14
4846 5064 1.374758 CAGCTTCAGGGTCACCGAC 60.375 63.158 0.00 0.00 43.47 4.79
4954 5172 2.917227 TCAGCGTCAGCCTGGTCA 60.917 61.111 0.00 0.00 46.67 4.02
4969 5187 1.067295 ACAGCCTGATGAAACCCTCA 58.933 50.000 0.00 0.00 38.81 3.86
4972 5190 1.369625 CGTACAGCCTGATGAAACCC 58.630 55.000 0.00 0.00 0.00 4.11
5036 5254 1.884579 AGACGCAAAGACGACCTTAGA 59.115 47.619 0.00 0.00 34.00 2.10
5037 5255 2.349297 AGACGCAAAGACGACCTTAG 57.651 50.000 0.00 0.00 34.00 2.18
5038 5256 2.034939 TCAAGACGCAAAGACGACCTTA 59.965 45.455 0.00 0.00 34.00 2.69
5043 5261 5.856126 ATTTATTCAAGACGCAAAGACGA 57.144 34.783 0.00 0.00 36.70 4.20
5096 5314 6.073003 CCATTTGTCCAGAGTTACTCAAAGAC 60.073 42.308 15.23 16.28 32.06 3.01
5097 5315 5.997746 CCATTTGTCCAGAGTTACTCAAAGA 59.002 40.000 15.23 5.14 32.06 2.52
5180 5403 6.985188 GTTGGAGCAACTCTTCAATACATA 57.015 37.500 0.00 0.00 42.05 2.29
5181 5404 5.886960 GTTGGAGCAACTCTTCAATACAT 57.113 39.130 0.00 0.00 42.05 2.29
5208 5456 4.570772 CGCAGCACCAAACAGTATATTACT 59.429 41.667 0.00 0.00 40.28 2.24
5244 5498 3.425404 CCAAAAATGATGCGAGTAACCG 58.575 45.455 0.00 0.00 0.00 4.44
5252 5506 1.205417 AGGAAGCCCAAAAATGATGCG 59.795 47.619 0.00 0.00 33.88 4.73
5266 5520 2.671682 GGTCAGGTCCCAGGAAGC 59.328 66.667 0.00 0.00 0.00 3.86
5267 5521 3.404773 GGGTCAGGTCCCAGGAAG 58.595 66.667 0.00 0.00 46.30 3.46
5274 5528 0.323178 TGTCTCTACGGGTCAGGTCC 60.323 60.000 0.00 0.00 0.00 4.46
5275 5529 1.677052 GATGTCTCTACGGGTCAGGTC 59.323 57.143 0.00 0.00 0.00 3.85
5276 5530 1.005569 TGATGTCTCTACGGGTCAGGT 59.994 52.381 0.00 0.00 0.00 4.00
5278 5532 4.554919 CGTTATGATGTCTCTACGGGTCAG 60.555 50.000 0.00 0.00 0.00 3.51
5304 5558 2.603580 GGGGCAGGGAGGAATTCC 59.396 66.667 17.31 17.31 46.00 3.01
5305 5559 1.659035 ATGGGGGCAGGGAGGAATTC 61.659 60.000 0.00 0.00 0.00 2.17
5308 5562 3.023116 CATGGGGGCAGGGAGGAA 61.023 66.667 0.00 0.00 0.00 3.36
5311 5565 4.133373 CACCATGGGGGCAGGGAG 62.133 72.222 18.09 0.00 42.05 4.30
5314 5568 2.681064 CAACACCATGGGGGCAGG 60.681 66.667 20.68 0.00 42.05 4.85
5315 5569 2.681064 CCAACACCATGGGGGCAG 60.681 66.667 20.68 7.30 42.05 4.85
5318 5572 2.362889 GAGCCAACACCATGGGGG 60.363 66.667 20.68 13.84 41.01 5.40
5321 5575 4.517663 TTGGAGCCAACACCATGG 57.482 55.556 11.19 11.19 43.70 3.66
5330 5584 0.687920 TACCAACGATGTTGGAGCCA 59.312 50.000 29.79 12.44 42.06 4.75
5332 5586 2.000447 GTCTACCAACGATGTTGGAGC 59.000 52.381 29.79 14.93 42.06 4.70
5335 5589 4.062293 TCAAAGTCTACCAACGATGTTGG 58.938 43.478 23.42 23.42 44.91 3.77
5336 5590 4.988540 TCTCAAAGTCTACCAACGATGTTG 59.011 41.667 2.74 2.74 0.00 3.33
5355 5852 0.895530 GATCCACGGAACCACTCTCA 59.104 55.000 0.00 0.00 0.00 3.27
5356 5853 1.134965 CAGATCCACGGAACCACTCTC 60.135 57.143 0.00 0.00 0.00 3.20
5357 5854 0.898320 CAGATCCACGGAACCACTCT 59.102 55.000 0.00 0.00 0.00 3.24
5358 5855 0.108138 CCAGATCCACGGAACCACTC 60.108 60.000 0.00 0.00 0.00 3.51
5359 5856 0.544357 TCCAGATCCACGGAACCACT 60.544 55.000 0.00 0.00 0.00 4.00
5367 5866 0.596083 GATGCTCGTCCAGATCCACG 60.596 60.000 3.62 3.62 37.36 4.94
5378 5877 2.530177 CTGTACGACAATGATGCTCGT 58.470 47.619 2.42 2.42 42.10 4.18
5405 5904 2.093764 CGAGGCTTGACAAAGAGAGGAT 60.094 50.000 0.00 0.00 35.19 3.24
5415 5914 5.185249 AGTTAGAAGAATACGAGGCTTGACA 59.815 40.000 9.20 0.00 0.00 3.58
5443 5942 0.322816 CTGTCCCAGAACCACCATGG 60.323 60.000 11.19 11.19 37.30 3.66
5454 5953 2.545532 GCTGAAGATCGATCTGTCCCAG 60.546 54.545 27.93 26.87 37.19 4.45
5457 5956 1.335182 TCGCTGAAGATCGATCTGTCC 59.665 52.381 27.93 19.19 37.19 4.02
5461 5960 2.425312 ACAAGTCGCTGAAGATCGATCT 59.575 45.455 22.32 22.32 39.22 2.75
5465 5964 1.391485 CCAACAAGTCGCTGAAGATCG 59.609 52.381 0.00 0.00 0.00 3.69
5466 5965 2.413453 GACCAACAAGTCGCTGAAGATC 59.587 50.000 0.00 0.00 0.00 2.75
5467 5966 2.224281 TGACCAACAAGTCGCTGAAGAT 60.224 45.455 0.00 0.00 39.77 2.40
5468 5967 1.138069 TGACCAACAAGTCGCTGAAGA 59.862 47.619 0.00 0.00 39.77 2.87
5469 5968 1.581934 TGACCAACAAGTCGCTGAAG 58.418 50.000 0.00 0.00 39.77 3.02
5498 5997 1.449782 TCGCAAGAGGCAGGACAAA 59.550 52.632 0.00 0.00 45.01 2.83
5512 6011 3.386486 ACGTCAACAGAAACTTATCGCA 58.614 40.909 0.00 0.00 0.00 5.10
5530 6029 2.158813 CCACCATGGGCTATAGAAACGT 60.159 50.000 18.09 0.00 32.67 3.99
5531 6030 2.494059 CCACCATGGGCTATAGAAACG 58.506 52.381 18.09 0.00 32.67 3.60
5590 6089 6.751888 CGAAGAAAATTTTGTCAGAAAGGTGT 59.248 34.615 8.47 0.00 0.00 4.16
5591 6090 6.198966 CCGAAGAAAATTTTGTCAGAAAGGTG 59.801 38.462 8.47 0.00 0.00 4.00
5629 6149 1.644786 CCGTCTTTTTAGCCAGCCCG 61.645 60.000 0.00 0.00 0.00 6.13
5671 6192 8.040132 CCCAAGCAAGAAATGAAAAATATACCA 58.960 33.333 0.00 0.00 0.00 3.25
5722 6243 3.955551 ACTAAAGACCCTTTCCGCAAAAA 59.044 39.130 0.00 0.00 0.00 1.94
5724 6245 2.882137 CACTAAAGACCCTTTCCGCAAA 59.118 45.455 0.00 0.00 0.00 3.68
5725 6246 2.158726 ACACTAAAGACCCTTTCCGCAA 60.159 45.455 0.00 0.00 0.00 4.85
5726 6247 1.418637 ACACTAAAGACCCTTTCCGCA 59.581 47.619 0.00 0.00 0.00 5.69
5727 6248 2.180432 ACACTAAAGACCCTTTCCGC 57.820 50.000 0.00 0.00 0.00 5.54
5728 6249 4.874396 GGAATACACTAAAGACCCTTTCCG 59.126 45.833 0.00 0.00 0.00 4.30
5729 6250 6.063496 AGGAATACACTAAAGACCCTTTCC 57.937 41.667 0.00 0.00 0.00 3.13
5730 6251 7.119407 GTCAAGGAATACACTAAAGACCCTTTC 59.881 40.741 0.00 0.00 31.07 2.62
5731 6252 6.940867 GTCAAGGAATACACTAAAGACCCTTT 59.059 38.462 0.00 0.00 31.07 3.11
5732 6253 6.272558 AGTCAAGGAATACACTAAAGACCCTT 59.727 38.462 0.00 0.00 33.46 3.95
5733 6254 5.785940 AGTCAAGGAATACACTAAAGACCCT 59.214 40.000 0.00 0.00 0.00 4.34
5734 6255 6.051179 AGTCAAGGAATACACTAAAGACCC 57.949 41.667 0.00 0.00 0.00 4.46
5735 6256 7.981102 AAAGTCAAGGAATACACTAAAGACC 57.019 36.000 0.00 0.00 0.00 3.85
5736 6257 9.052759 TCAAAAGTCAAGGAATACACTAAAGAC 57.947 33.333 0.00 0.00 0.00 3.01
5737 6258 9.621629 TTCAAAAGTCAAGGAATACACTAAAGA 57.378 29.630 0.00 0.00 0.00 2.52
5741 6262 8.296713 GCATTTCAAAAGTCAAGGAATACACTA 58.703 33.333 0.00 0.00 0.00 2.74
5742 6263 7.147976 GCATTTCAAAAGTCAAGGAATACACT 58.852 34.615 0.00 0.00 0.00 3.55
5743 6264 6.366061 GGCATTTCAAAAGTCAAGGAATACAC 59.634 38.462 0.00 0.00 0.00 2.90
5744 6265 6.454795 GGCATTTCAAAAGTCAAGGAATACA 58.545 36.000 0.00 0.00 0.00 2.29
5745 6266 5.572896 CGGCATTTCAAAAGTCAAGGAATAC 59.427 40.000 0.00 0.00 0.00 1.89
5746 6267 5.336372 CCGGCATTTCAAAAGTCAAGGAATA 60.336 40.000 0.00 0.00 0.00 1.75
5747 6268 4.559153 CGGCATTTCAAAAGTCAAGGAAT 58.441 39.130 0.00 0.00 0.00 3.01
5748 6269 3.243704 CCGGCATTTCAAAAGTCAAGGAA 60.244 43.478 0.00 0.00 0.00 3.36
5749 6270 2.295909 CCGGCATTTCAAAAGTCAAGGA 59.704 45.455 0.00 0.00 0.00 3.36
5750 6271 2.035832 ACCGGCATTTCAAAAGTCAAGG 59.964 45.455 0.00 0.00 0.00 3.61
5751 6272 3.052036 CACCGGCATTTCAAAAGTCAAG 58.948 45.455 0.00 0.00 0.00 3.02
5752 6273 2.223923 CCACCGGCATTTCAAAAGTCAA 60.224 45.455 0.00 0.00 0.00 3.18
5753 6274 1.339610 CCACCGGCATTTCAAAAGTCA 59.660 47.619 0.00 0.00 0.00 3.41
5754 6275 1.336795 CCCACCGGCATTTCAAAAGTC 60.337 52.381 0.00 0.00 0.00 3.01
5755 6276 0.678950 CCCACCGGCATTTCAAAAGT 59.321 50.000 0.00 0.00 0.00 2.66
5756 6277 0.678950 ACCCACCGGCATTTCAAAAG 59.321 50.000 0.00 0.00 0.00 2.27
5757 6278 0.390860 CACCCACCGGCATTTCAAAA 59.609 50.000 0.00 0.00 0.00 2.44
5788 6309 7.448748 AGCCAATCGTGTAACTTTATTTTCT 57.551 32.000 0.00 0.00 31.75 2.52
5857 6773 2.684843 CGCCCAGAGAGCAAAGCAC 61.685 63.158 0.00 0.00 0.00 4.40
5858 6774 2.359107 CGCCCAGAGAGCAAAGCA 60.359 61.111 0.00 0.00 0.00 3.91
5923 6873 4.000988 TGTTAAATTCTCTCAACGAGCCC 58.999 43.478 0.00 0.00 39.70 5.19
5924 6874 4.691216 ACTGTTAAATTCTCTCAACGAGCC 59.309 41.667 0.00 0.00 39.70 4.70
5925 6875 5.177696 ACACTGTTAAATTCTCTCAACGAGC 59.822 40.000 0.00 0.00 39.70 5.03
5926 6876 6.771188 ACACTGTTAAATTCTCTCAACGAG 57.229 37.500 0.00 0.00 41.30 4.18
5927 6877 7.279090 TGAAACACTGTTAAATTCTCTCAACGA 59.721 33.333 0.00 0.00 0.00 3.85
5928 6878 7.406553 TGAAACACTGTTAAATTCTCTCAACG 58.593 34.615 0.00 0.00 0.00 4.10
5966 6976 8.133754 TGTAGTTTACATTGTCAGTGTGTAAC 57.866 34.615 11.01 13.35 37.86 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.