Multiple sequence alignment - TraesCS1A01G246300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G246300 chr1A 100.000 3665 0 0 1 3665 436420212 436423876 0.000000e+00 6769.0
1 TraesCS1A01G246300 chr1A 87.624 202 18 4 115 311 52453452 52453651 1.020000e-55 228.0
2 TraesCS1A01G246300 chr1D 94.210 2815 91 27 895 3665 337217087 337219873 0.000000e+00 4229.0
3 TraesCS1A01G246300 chr1D 91.787 207 12 4 537 743 337216894 337217095 2.150000e-72 283.0
4 TraesCS1A01G246300 chr1B 94.381 1940 64 12 895 2801 452571643 452573570 0.000000e+00 2937.0
5 TraesCS1A01G246300 chr1B 95.057 789 27 5 2879 3665 452573604 452574382 0.000000e+00 1230.0
6 TraesCS1A01G246300 chr1B 91.304 230 9 7 509 732 452571358 452571582 1.650000e-78 303.0
7 TraesCS1A01G246300 chr1B 93.388 121 6 2 1 120 647530539 647530658 1.050000e-40 178.0
8 TraesCS1A01G246300 chr7B 82.078 1607 214 45 1014 2607 704664266 704662721 0.000000e+00 1304.0
9 TraesCS1A01G246300 chr7B 94.167 120 7 0 1 120 11441158 11441277 2.250000e-42 183.0
10 TraesCS1A01G246300 chr7A 81.700 1612 231 41 1014 2613 705418643 705417084 0.000000e+00 1284.0
11 TraesCS1A01G246300 chr7A 80.480 625 112 9 1997 2613 705546542 705545920 1.540000e-128 470.0
12 TraesCS1A01G246300 chr7A 87.745 204 16 6 115 311 116619517 116619316 2.850000e-56 230.0
13 TraesCS1A01G246300 chr7A 86.730 211 20 5 117 321 130378383 130378175 1.020000e-55 228.0
14 TraesCS1A01G246300 chr7A 86.321 212 22 7 123 331 572183354 572183147 1.320000e-54 224.0
15 TraesCS1A01G246300 chr7A 90.789 152 14 0 744 895 47692636 47692787 1.730000e-48 204.0
16 TraesCS1A01G246300 chr7A 94.167 120 7 0 1 120 379029880 379029999 2.250000e-42 183.0
17 TraesCS1A01G246300 chr7D 81.864 1588 216 43 1040 2613 613694272 613692743 0.000000e+00 1271.0
18 TraesCS1A01G246300 chr7D 82.005 439 70 8 2161 2592 613765865 613765429 7.480000e-97 364.0
19 TraesCS1A01G246300 chr7D 77.106 546 95 21 2018 2545 613660685 613660152 4.630000e-74 289.0
20 TraesCS1A01G246300 chr7D 94.167 120 7 0 1 120 161541268 161541387 2.250000e-42 183.0
21 TraesCS1A01G246300 chr6D 76.242 1469 296 41 1104 2545 143092302 143090860 0.000000e+00 730.0
22 TraesCS1A01G246300 chr6D 78.625 538 96 15 2018 2545 97520597 97520069 4.530000e-89 339.0
23 TraesCS1A01G246300 chr6D 95.484 155 6 1 740 894 420705806 420705959 2.830000e-61 246.0
24 TraesCS1A01G246300 chr6A 75.620 1452 309 34 1111 2538 188354896 188353466 0.000000e+00 678.0
25 TraesCS1A01G246300 chr6A 90.270 185 14 2 121 302 180309341 180309158 4.730000e-59 239.0
26 TraesCS1A01G246300 chr2A 76.533 750 143 23 1118 1855 707957738 707958466 2.670000e-101 379.0
27 TraesCS1A01G246300 chr2A 87.440 207 18 7 115 314 516026386 516026181 7.910000e-57 231.0
28 TraesCS1A01G246300 chr2A 87.379 206 19 4 115 315 38649761 38649964 2.850000e-56 230.0
29 TraesCS1A01G246300 chr2A 95.000 120 6 0 1 120 606381394 606381275 4.830000e-44 189.0
30 TraesCS1A01G246300 chr2D 76.463 752 140 24 1118 1855 568464416 568465144 1.240000e-99 374.0
31 TraesCS1A01G246300 chr2D 77.189 491 88 15 1373 1855 568357760 568358234 7.800000e-67 265.0
32 TraesCS1A01G246300 chr2D 94.167 120 7 0 1 120 134632187 134632306 2.250000e-42 183.0
33 TraesCS1A01G246300 chr2D 93.333 120 8 0 1 120 27834917 27835036 1.050000e-40 178.0
34 TraesCS1A01G246300 chrUn 78.082 511 97 12 2015 2514 293161515 293161009 3.550000e-80 309.0
35 TraesCS1A01G246300 chr6B 75.563 622 117 19 1105 1722 255211360 255210770 1.300000e-69 274.0
36 TraesCS1A01G246300 chr2B 99.338 151 1 0 744 894 546207481 546207631 1.300000e-69 274.0
37 TraesCS1A01G246300 chr2B 98.675 151 2 0 744 894 394319058 394318908 6.030000e-68 268.0
38 TraesCS1A01G246300 chr4D 98.675 151 2 0 744 894 347516143 347515993 6.030000e-68 268.0
39 TraesCS1A01G246300 chr4A 94.737 152 8 0 744 895 614028709 614028558 1.700000e-58 237.0
40 TraesCS1A01G246300 chr4A 89.474 190 15 3 123 309 11366204 11366017 6.120000e-58 235.0
41 TraesCS1A01G246300 chr4A 92.053 151 11 1 744 894 542783421 542783272 1.030000e-50 211.0
42 TraesCS1A01G246300 chr3A 88.060 201 19 4 115 311 78708878 78708679 2.200000e-57 233.0
43 TraesCS1A01G246300 chr3D 94.167 120 7 0 1 120 32623504 32623385 2.250000e-42 183.0
44 TraesCS1A01G246300 chr3D 93.333 120 8 0 1 120 163126516 163126397 1.050000e-40 178.0
45 TraesCS1A01G246300 chr3B 97.297 37 0 1 744 779 794598856 794598892 1.100000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G246300 chr1A 436420212 436423876 3664 False 6769 6769 100.000000 1 3665 1 chr1A.!!$F2 3664
1 TraesCS1A01G246300 chr1D 337216894 337219873 2979 False 2256 4229 92.998500 537 3665 2 chr1D.!!$F1 3128
2 TraesCS1A01G246300 chr1B 452571358 452574382 3024 False 1490 2937 93.580667 509 3665 3 chr1B.!!$F2 3156
3 TraesCS1A01G246300 chr7B 704662721 704664266 1545 True 1304 1304 82.078000 1014 2607 1 chr7B.!!$R1 1593
4 TraesCS1A01G246300 chr7A 705417084 705418643 1559 True 1284 1284 81.700000 1014 2613 1 chr7A.!!$R4 1599
5 TraesCS1A01G246300 chr7A 705545920 705546542 622 True 470 470 80.480000 1997 2613 1 chr7A.!!$R5 616
6 TraesCS1A01G246300 chr7D 613692743 613694272 1529 True 1271 1271 81.864000 1040 2613 1 chr7D.!!$R2 1573
7 TraesCS1A01G246300 chr7D 613660152 613660685 533 True 289 289 77.106000 2018 2545 1 chr7D.!!$R1 527
8 TraesCS1A01G246300 chr6D 143090860 143092302 1442 True 730 730 76.242000 1104 2545 1 chr6D.!!$R2 1441
9 TraesCS1A01G246300 chr6D 97520069 97520597 528 True 339 339 78.625000 2018 2545 1 chr6D.!!$R1 527
10 TraesCS1A01G246300 chr6A 188353466 188354896 1430 True 678 678 75.620000 1111 2538 1 chr6A.!!$R2 1427
11 TraesCS1A01G246300 chr2A 707957738 707958466 728 False 379 379 76.533000 1118 1855 1 chr2A.!!$F2 737
12 TraesCS1A01G246300 chr2D 568464416 568465144 728 False 374 374 76.463000 1118 1855 1 chr2D.!!$F4 737
13 TraesCS1A01G246300 chrUn 293161009 293161515 506 True 309 309 78.082000 2015 2514 1 chrUn.!!$R1 499
14 TraesCS1A01G246300 chr6B 255210770 255211360 590 True 274 274 75.563000 1105 1722 1 chr6B.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 842 0.031414 ACCCCAGCTAATCCTACGGT 60.031 55.0 0.0 0.0 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2669 2768 0.109319 ATGTTGTGAATTTCGCGCCC 60.109 50.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.912787 AGAGATTTCACTACAAACTACATACG 57.087 34.615 0.00 0.00 0.00 3.06
43 44 7.974501 AGAGATTTCACTACAAACTACATACGG 59.025 37.037 0.00 0.00 0.00 4.02
44 45 7.833786 AGATTTCACTACAAACTACATACGGA 58.166 34.615 0.00 0.00 0.00 4.69
45 46 8.475639 AGATTTCACTACAAACTACATACGGAT 58.524 33.333 0.00 0.00 0.00 4.18
46 47 7.821595 TTTCACTACAAACTACATACGGATG 57.178 36.000 5.94 5.94 39.16 3.51
48 49 7.628769 TCACTACAAACTACATACGGATGTA 57.371 36.000 19.32 19.32 44.77 2.29
49 50 8.229253 TCACTACAAACTACATACGGATGTAT 57.771 34.615 20.64 8.38 45.42 2.29
87 88 7.992754 AGAGTGTAGATTCATTCTTTTTGCT 57.007 32.000 0.00 0.00 35.79 3.91
88 89 8.038492 AGAGTGTAGATTCATTCTTTTTGCTC 57.962 34.615 0.00 0.00 35.79 4.26
89 90 7.120432 AGAGTGTAGATTCATTCTTTTTGCTCC 59.880 37.037 0.00 0.00 35.79 4.70
90 91 6.024049 GTGTAGATTCATTCTTTTTGCTCCG 58.976 40.000 0.00 0.00 35.79 4.63
91 92 5.705441 TGTAGATTCATTCTTTTTGCTCCGT 59.295 36.000 0.00 0.00 35.79 4.69
92 93 6.876789 TGTAGATTCATTCTTTTTGCTCCGTA 59.123 34.615 0.00 0.00 35.79 4.02
93 94 7.552687 TGTAGATTCATTCTTTTTGCTCCGTAT 59.447 33.333 0.00 0.00 35.79 3.06
94 95 6.789262 AGATTCATTCTTTTTGCTCCGTATG 58.211 36.000 0.00 0.00 0.00 2.39
95 96 5.957842 TTCATTCTTTTTGCTCCGTATGT 57.042 34.783 0.00 0.00 0.00 2.29
96 97 7.552687 AGATTCATTCTTTTTGCTCCGTATGTA 59.447 33.333 0.00 0.00 0.00 2.29
97 98 6.662414 TCATTCTTTTTGCTCCGTATGTAG 57.338 37.500 0.00 0.00 0.00 2.74
98 99 6.170506 TCATTCTTTTTGCTCCGTATGTAGT 58.829 36.000 0.00 0.00 0.00 2.73
99 100 6.312918 TCATTCTTTTTGCTCCGTATGTAGTC 59.687 38.462 0.00 0.00 0.00 2.59
100 101 4.501071 TCTTTTTGCTCCGTATGTAGTCC 58.499 43.478 0.00 0.00 0.00 3.85
101 102 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
102 103 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
103 104 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
104 105 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
105 106 2.557056 TGCTCCGTATGTAGTCCATAGC 59.443 50.000 0.00 0.00 36.71 2.97
106 107 2.094649 GCTCCGTATGTAGTCCATAGCC 60.095 54.545 0.00 0.00 36.71 3.93
107 108 2.156917 TCCGTATGTAGTCCATAGCCG 58.843 52.381 0.00 0.00 36.71 5.52
108 109 2.156917 CCGTATGTAGTCCATAGCCGA 58.843 52.381 0.00 0.00 36.71 5.54
109 110 2.555325 CCGTATGTAGTCCATAGCCGAA 59.445 50.000 0.00 0.00 36.71 4.30
110 111 3.192844 CCGTATGTAGTCCATAGCCGAAT 59.807 47.826 0.00 0.00 36.71 3.34
111 112 4.413087 CGTATGTAGTCCATAGCCGAATC 58.587 47.826 0.00 0.00 36.71 2.52
112 113 4.156190 CGTATGTAGTCCATAGCCGAATCT 59.844 45.833 0.00 0.00 36.71 2.40
113 114 4.792521 ATGTAGTCCATAGCCGAATCTC 57.207 45.455 0.00 0.00 29.82 2.75
114 115 3.833732 TGTAGTCCATAGCCGAATCTCT 58.166 45.455 0.00 0.00 0.00 3.10
115 116 4.981812 TGTAGTCCATAGCCGAATCTCTA 58.018 43.478 0.00 0.00 0.00 2.43
116 117 5.382616 TGTAGTCCATAGCCGAATCTCTAA 58.617 41.667 0.00 0.00 0.00 2.10
117 118 5.831525 TGTAGTCCATAGCCGAATCTCTAAA 59.168 40.000 0.00 0.00 0.00 1.85
118 119 5.871396 AGTCCATAGCCGAATCTCTAAAA 57.129 39.130 0.00 0.00 0.00 1.52
119 120 6.235231 AGTCCATAGCCGAATCTCTAAAAA 57.765 37.500 0.00 0.00 0.00 1.94
135 136 2.820845 AAAAAGGTGTGTCCAGGGC 58.179 52.632 0.00 0.00 39.02 5.19
136 137 0.032615 AAAAAGGTGTGTCCAGGGCA 60.033 50.000 0.00 0.00 39.02 5.36
137 138 0.755327 AAAAGGTGTGTCCAGGGCAC 60.755 55.000 18.14 18.14 39.02 5.01
160 161 8.136057 CACCTCTAAATGTGCTCTAGTTATTG 57.864 38.462 0.00 0.00 0.00 1.90
161 162 6.763610 ACCTCTAAATGTGCTCTAGTTATTGC 59.236 38.462 0.00 0.00 0.00 3.56
162 163 6.763135 CCTCTAAATGTGCTCTAGTTATTGCA 59.237 38.462 0.00 0.00 0.00 4.08
171 172 5.755375 TGCTCTAGTTATTGCACATCTAAGC 59.245 40.000 0.00 1.40 0.00 3.09
172 173 5.107683 GCTCTAGTTATTGCACATCTAAGCG 60.108 44.000 0.00 0.00 0.00 4.68
173 174 5.289595 TCTAGTTATTGCACATCTAAGCGG 58.710 41.667 0.00 0.00 0.00 5.52
174 175 3.206150 AGTTATTGCACATCTAAGCGGG 58.794 45.455 0.00 0.00 0.00 6.13
175 176 2.943033 GTTATTGCACATCTAAGCGGGT 59.057 45.455 0.00 0.00 0.00 5.28
176 177 1.382522 ATTGCACATCTAAGCGGGTG 58.617 50.000 0.00 0.00 0.00 4.61
177 178 0.323302 TTGCACATCTAAGCGGGTGA 59.677 50.000 0.00 0.00 33.16 4.02
178 179 0.323302 TGCACATCTAAGCGGGTGAA 59.677 50.000 0.00 0.00 33.16 3.18
179 180 1.065491 TGCACATCTAAGCGGGTGAAT 60.065 47.619 0.00 0.00 33.16 2.57
180 181 1.599542 GCACATCTAAGCGGGTGAATC 59.400 52.381 0.00 0.00 33.16 2.52
181 182 2.905075 CACATCTAAGCGGGTGAATCA 58.095 47.619 0.00 0.00 33.16 2.57
182 183 3.270027 CACATCTAAGCGGGTGAATCAA 58.730 45.455 0.00 0.00 33.16 2.57
183 184 3.310774 CACATCTAAGCGGGTGAATCAAG 59.689 47.826 0.00 0.00 33.16 3.02
184 185 2.024176 TCTAAGCGGGTGAATCAAGC 57.976 50.000 0.00 0.00 0.00 4.01
185 186 1.277842 TCTAAGCGGGTGAATCAAGCA 59.722 47.619 8.77 0.00 0.00 3.91
186 187 2.092968 TCTAAGCGGGTGAATCAAGCAT 60.093 45.455 8.77 0.86 0.00 3.79
187 188 2.418368 AAGCGGGTGAATCAAGCATA 57.582 45.000 8.77 0.00 0.00 3.14
188 189 2.418368 AGCGGGTGAATCAAGCATAA 57.582 45.000 8.77 0.00 0.00 1.90
189 190 2.722094 AGCGGGTGAATCAAGCATAAA 58.278 42.857 8.77 0.00 0.00 1.40
190 191 3.088532 AGCGGGTGAATCAAGCATAAAA 58.911 40.909 8.77 0.00 0.00 1.52
191 192 3.509575 AGCGGGTGAATCAAGCATAAAAA 59.490 39.130 8.77 0.00 0.00 1.94
240 241 8.499403 TCCACACGAATTTTAATGTATGATCA 57.501 30.769 0.00 0.00 0.00 2.92
241 242 8.951243 TCCACACGAATTTTAATGTATGATCAA 58.049 29.630 0.00 0.00 0.00 2.57
242 243 9.734620 CCACACGAATTTTAATGTATGATCAAT 57.265 29.630 0.00 0.00 0.00 2.57
275 276 9.836864 AGACTTAGATGTGCAATATTTATGTCA 57.163 29.630 19.33 1.86 34.25 3.58
276 277 9.869844 GACTTAGATGTGCAATATTTATGTCAC 57.130 33.333 15.83 0.00 33.05 3.67
277 278 9.394767 ACTTAGATGTGCAATATTTATGTCACA 57.605 29.630 0.00 0.00 38.34 3.58
283 284 9.783081 ATGTGCAATATTTATGTCACATCTAGA 57.217 29.630 0.00 0.00 39.26 2.43
284 285 9.783081 TGTGCAATATTTATGTCACATCTAGAT 57.217 29.630 0.00 0.00 33.26 1.98
331 332 7.634671 AAAACTTATATTTGGTAACGGAGGG 57.365 36.000 0.00 0.00 42.51 4.30
332 333 6.564557 AACTTATATTTGGTAACGGAGGGA 57.435 37.500 0.00 0.00 42.51 4.20
333 334 6.564557 ACTTATATTTGGTAACGGAGGGAA 57.435 37.500 0.00 0.00 42.51 3.97
334 335 7.145474 ACTTATATTTGGTAACGGAGGGAAT 57.855 36.000 0.00 0.00 42.51 3.01
335 336 8.266363 ACTTATATTTGGTAACGGAGGGAATA 57.734 34.615 0.00 0.00 42.51 1.75
336 337 8.887393 ACTTATATTTGGTAACGGAGGGAATAT 58.113 33.333 0.00 0.00 42.51 1.28
340 341 6.503560 TTTGGTAACGGAGGGAATATATGT 57.496 37.500 0.00 0.00 42.51 2.29
341 342 5.477607 TGGTAACGGAGGGAATATATGTG 57.522 43.478 0.00 0.00 42.51 3.21
342 343 4.903049 TGGTAACGGAGGGAATATATGTGT 59.097 41.667 0.00 0.00 42.51 3.72
343 344 5.011329 TGGTAACGGAGGGAATATATGTGTC 59.989 44.000 0.00 0.00 42.51 3.67
344 345 5.011329 GGTAACGGAGGGAATATATGTGTCA 59.989 44.000 0.00 0.00 0.00 3.58
345 346 4.873746 ACGGAGGGAATATATGTGTCAG 57.126 45.455 0.00 0.00 0.00 3.51
346 347 4.480115 ACGGAGGGAATATATGTGTCAGA 58.520 43.478 0.00 0.00 0.00 3.27
347 348 4.281182 ACGGAGGGAATATATGTGTCAGAC 59.719 45.833 0.00 0.00 0.00 3.51
348 349 4.280929 CGGAGGGAATATATGTGTCAGACA 59.719 45.833 0.00 0.00 39.53 3.41
349 350 5.221441 CGGAGGGAATATATGTGTCAGACAA 60.221 44.000 4.32 0.00 38.36 3.18
350 351 6.519043 CGGAGGGAATATATGTGTCAGACAAT 60.519 42.308 4.32 4.34 38.36 2.71
351 352 6.652481 GGAGGGAATATATGTGTCAGACAATG 59.348 42.308 4.32 0.00 38.36 2.82
352 353 7.141758 AGGGAATATATGTGTCAGACAATGT 57.858 36.000 4.32 3.00 38.36 2.71
353 354 8.262601 AGGGAATATATGTGTCAGACAATGTA 57.737 34.615 4.32 5.01 38.36 2.29
354 355 8.884323 AGGGAATATATGTGTCAGACAATGTAT 58.116 33.333 4.32 6.80 38.36 2.29
362 363 7.770801 TGTGTCAGACAATGTATAGTATTGC 57.229 36.000 4.32 0.00 38.72 3.56
363 364 6.761242 TGTGTCAGACAATGTATAGTATTGCC 59.239 38.462 4.32 0.55 38.72 4.52
364 365 6.761242 GTGTCAGACAATGTATAGTATTGCCA 59.239 38.462 4.32 0.00 38.72 4.92
365 366 7.442364 GTGTCAGACAATGTATAGTATTGCCAT 59.558 37.037 4.32 0.00 38.72 4.40
366 367 8.646900 TGTCAGACAATGTATAGTATTGCCATA 58.353 33.333 0.00 0.00 38.72 2.74
367 368 9.144747 GTCAGACAATGTATAGTATTGCCATAG 57.855 37.037 0.00 0.00 38.72 2.23
368 369 8.870116 TCAGACAATGTATAGTATTGCCATAGT 58.130 33.333 8.75 0.00 38.72 2.12
371 372 9.587772 GACAATGTATAGTATTGCCATAGTAGG 57.412 37.037 8.75 0.00 38.72 3.18
372 373 8.540388 ACAATGTATAGTATTGCCATAGTAGGG 58.460 37.037 0.00 0.00 38.72 3.53
390 391 1.356624 GCAATACCTGCGCACATCC 59.643 57.895 5.66 0.00 42.37 3.51
391 392 2.024918 CAATACCTGCGCACATCCC 58.975 57.895 5.66 0.00 0.00 3.85
392 393 1.152963 AATACCTGCGCACATCCCC 60.153 57.895 5.66 0.00 0.00 4.81
393 394 2.624674 AATACCTGCGCACATCCCCC 62.625 60.000 5.66 0.00 0.00 5.40
395 396 4.738998 CCTGCGCACATCCCCCAA 62.739 66.667 5.66 0.00 0.00 4.12
396 397 2.440796 CTGCGCACATCCCCCAAT 60.441 61.111 5.66 0.00 0.00 3.16
397 398 2.440065 TGCGCACATCCCCCAATC 60.440 61.111 5.66 0.00 0.00 2.67
398 399 3.585990 GCGCACATCCCCCAATCG 61.586 66.667 0.30 0.00 0.00 3.34
399 400 2.189257 CGCACATCCCCCAATCGA 59.811 61.111 0.00 0.00 0.00 3.59
400 401 1.451207 CGCACATCCCCCAATCGAA 60.451 57.895 0.00 0.00 0.00 3.71
401 402 1.029408 CGCACATCCCCCAATCGAAA 61.029 55.000 0.00 0.00 0.00 3.46
402 403 1.402787 GCACATCCCCCAATCGAAAT 58.597 50.000 0.00 0.00 0.00 2.17
403 404 1.067516 GCACATCCCCCAATCGAAATG 59.932 52.381 0.00 0.00 0.00 2.32
404 405 1.067516 CACATCCCCCAATCGAAATGC 59.932 52.381 0.00 0.00 0.00 3.56
405 406 0.311790 CATCCCCCAATCGAAATGCG 59.688 55.000 0.00 0.00 42.69 4.73
406 407 1.455383 ATCCCCCAATCGAAATGCGC 61.455 55.000 0.00 0.00 40.61 6.09
407 408 2.412937 CCCCAATCGAAATGCGCC 59.587 61.111 4.18 0.00 40.61 6.53
408 409 2.024588 CCCAATCGAAATGCGCCG 59.975 61.111 4.18 0.00 40.61 6.46
409 410 2.651863 CCAATCGAAATGCGCCGC 60.652 61.111 4.18 0.00 40.61 6.53
410 411 2.100023 CAATCGAAATGCGCCGCA 59.900 55.556 16.69 16.69 44.86 5.69
419 420 2.899838 TGCGCCGCATCCCATTAC 60.900 61.111 8.16 0.00 31.71 1.89
420 421 3.660111 GCGCCGCATCCCATTACC 61.660 66.667 3.15 0.00 0.00 2.85
421 422 2.978010 CGCCGCATCCCATTACCC 60.978 66.667 0.00 0.00 0.00 3.69
422 423 2.978010 GCCGCATCCCATTACCCG 60.978 66.667 0.00 0.00 0.00 5.28
423 424 2.978010 CCGCATCCCATTACCCGC 60.978 66.667 0.00 0.00 0.00 6.13
424 425 2.111043 CGCATCCCATTACCCGCT 59.889 61.111 0.00 0.00 0.00 5.52
425 426 1.369692 CGCATCCCATTACCCGCTA 59.630 57.895 0.00 0.00 0.00 4.26
426 427 0.670546 CGCATCCCATTACCCGCTAG 60.671 60.000 0.00 0.00 0.00 3.42
427 428 0.685097 GCATCCCATTACCCGCTAGA 59.315 55.000 0.00 0.00 0.00 2.43
428 429 1.071699 GCATCCCATTACCCGCTAGAA 59.928 52.381 0.00 0.00 0.00 2.10
429 430 2.486548 GCATCCCATTACCCGCTAGAAA 60.487 50.000 0.00 0.00 0.00 2.52
430 431 3.815809 CATCCCATTACCCGCTAGAAAA 58.184 45.455 0.00 0.00 0.00 2.29
431 432 4.204012 CATCCCATTACCCGCTAGAAAAA 58.796 43.478 0.00 0.00 0.00 1.94
432 433 3.613030 TCCCATTACCCGCTAGAAAAAC 58.387 45.455 0.00 0.00 0.00 2.43
433 434 2.686405 CCCATTACCCGCTAGAAAAACC 59.314 50.000 0.00 0.00 0.00 3.27
434 435 3.349022 CCATTACCCGCTAGAAAAACCA 58.651 45.455 0.00 0.00 0.00 3.67
435 436 3.128068 CCATTACCCGCTAGAAAAACCAC 59.872 47.826 0.00 0.00 0.00 4.16
436 437 3.775261 TTACCCGCTAGAAAAACCACT 57.225 42.857 0.00 0.00 0.00 4.00
437 438 2.180432 ACCCGCTAGAAAAACCACTC 57.820 50.000 0.00 0.00 0.00 3.51
438 439 1.697982 ACCCGCTAGAAAAACCACTCT 59.302 47.619 0.00 0.00 0.00 3.24
439 440 2.289506 ACCCGCTAGAAAAACCACTCTC 60.290 50.000 0.00 0.00 0.00 3.20
440 441 2.347731 CCGCTAGAAAAACCACTCTCC 58.652 52.381 0.00 0.00 0.00 3.71
441 442 2.028020 CCGCTAGAAAAACCACTCTCCT 60.028 50.000 0.00 0.00 0.00 3.69
442 443 3.254892 CGCTAGAAAAACCACTCTCCTC 58.745 50.000 0.00 0.00 0.00 3.71
443 444 3.056465 CGCTAGAAAAACCACTCTCCTCT 60.056 47.826 0.00 0.00 0.00 3.69
444 445 4.561734 CGCTAGAAAAACCACTCTCCTCTT 60.562 45.833 0.00 0.00 0.00 2.85
445 446 4.932799 GCTAGAAAAACCACTCTCCTCTTC 59.067 45.833 0.00 0.00 0.00 2.87
446 447 5.511545 GCTAGAAAAACCACTCTCCTCTTCA 60.512 44.000 0.00 0.00 0.00 3.02
447 448 4.967036 AGAAAAACCACTCTCCTCTTCAG 58.033 43.478 0.00 0.00 0.00 3.02
448 449 2.849294 AAACCACTCTCCTCTTCAGC 57.151 50.000 0.00 0.00 0.00 4.26
449 450 0.980423 AACCACTCTCCTCTTCAGCC 59.020 55.000 0.00 0.00 0.00 4.85
450 451 0.178921 ACCACTCTCCTCTTCAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
451 452 0.248843 CCACTCTCCTCTTCAGCCAC 59.751 60.000 0.00 0.00 0.00 5.01
452 453 0.248843 CACTCTCCTCTTCAGCCACC 59.751 60.000 0.00 0.00 0.00 4.61
453 454 1.254284 ACTCTCCTCTTCAGCCACCG 61.254 60.000 0.00 0.00 0.00 4.94
454 455 2.125350 CTCCTCTTCAGCCACCGC 60.125 66.667 0.00 0.00 0.00 5.68
455 456 3.672295 CTCCTCTTCAGCCACCGCC 62.672 68.421 0.00 0.00 34.57 6.13
456 457 3.710722 CCTCTTCAGCCACCGCCT 61.711 66.667 0.00 0.00 34.57 5.52
457 458 2.359169 CCTCTTCAGCCACCGCCTA 61.359 63.158 0.00 0.00 34.57 3.93
458 459 1.142748 CTCTTCAGCCACCGCCTAG 59.857 63.158 0.00 0.00 34.57 3.02
478 479 7.939784 CCTAGGTAGTTTCTAGGCAAAATTT 57.060 36.000 0.00 0.00 44.87 1.82
479 480 7.762382 CCTAGGTAGTTTCTAGGCAAAATTTG 58.238 38.462 0.00 0.57 44.87 2.32
480 481 7.393515 CCTAGGTAGTTTCTAGGCAAAATTTGT 59.606 37.037 7.60 0.00 44.87 2.83
481 482 7.215719 AGGTAGTTTCTAGGCAAAATTTGTC 57.784 36.000 1.48 1.48 34.90 3.18
482 483 6.775629 AGGTAGTTTCTAGGCAAAATTTGTCA 59.224 34.615 13.11 0.00 37.85 3.58
483 484 7.286775 AGGTAGTTTCTAGGCAAAATTTGTCAA 59.713 33.333 13.11 0.00 37.85 3.18
484 485 7.923878 GGTAGTTTCTAGGCAAAATTTGTCAAA 59.076 33.333 13.11 0.00 37.85 2.69
485 486 9.476202 GTAGTTTCTAGGCAAAATTTGTCAAAT 57.524 29.630 13.11 4.91 37.85 2.32
486 487 8.369218 AGTTTCTAGGCAAAATTTGTCAAATG 57.631 30.769 13.11 2.57 37.85 2.32
487 488 8.203485 AGTTTCTAGGCAAAATTTGTCAAATGA 58.797 29.630 13.11 2.38 37.85 2.57
488 489 8.992073 GTTTCTAGGCAAAATTTGTCAAATGAT 58.008 29.630 13.11 1.74 37.85 2.45
490 491 9.859427 TTCTAGGCAAAATTTGTCAAATGATAG 57.141 29.630 13.11 4.66 37.85 2.08
491 492 9.023962 TCTAGGCAAAATTTGTCAAATGATAGT 57.976 29.630 13.11 0.00 37.85 2.12
492 493 9.643693 CTAGGCAAAATTTGTCAAATGATAGTT 57.356 29.630 13.11 0.00 37.85 2.24
493 494 8.538409 AGGCAAAATTTGTCAAATGATAGTTC 57.462 30.769 13.11 0.32 37.85 3.01
494 495 8.149647 AGGCAAAATTTGTCAAATGATAGTTCA 58.850 29.630 13.11 0.00 37.85 3.18
495 496 8.437742 GGCAAAATTTGTCAAATGATAGTTCAG 58.562 33.333 11.54 1.17 33.19 3.02
496 497 8.981647 GCAAAATTTGTCAAATGATAGTTCAGT 58.018 29.630 11.54 0.00 34.73 3.41
498 499 9.480053 AAAATTTGTCAAATGATAGTTCAGTGG 57.520 29.630 11.54 0.00 34.73 4.00
499 500 7.765695 ATTTGTCAAATGATAGTTCAGTGGT 57.234 32.000 10.05 0.00 34.73 4.16
500 501 8.862325 ATTTGTCAAATGATAGTTCAGTGGTA 57.138 30.769 10.05 0.00 34.73 3.25
501 502 7.667043 TTGTCAAATGATAGTTCAGTGGTAC 57.333 36.000 0.00 0.00 34.73 3.34
502 503 6.764379 TGTCAAATGATAGTTCAGTGGTACA 58.236 36.000 0.00 0.00 34.73 2.90
526 527 0.659957 GCCTGAGATGCGGATTTGTC 59.340 55.000 0.00 0.00 0.00 3.18
527 528 2.013563 GCCTGAGATGCGGATTTGTCA 61.014 52.381 0.00 0.00 0.00 3.58
529 530 2.749076 CCTGAGATGCGGATTTGTCAAA 59.251 45.455 0.00 0.00 0.00 2.69
531 532 4.348656 CTGAGATGCGGATTTGTCAAATG 58.651 43.478 15.52 3.64 0.00 2.32
532 533 4.009002 TGAGATGCGGATTTGTCAAATGA 58.991 39.130 15.52 0.00 0.00 2.57
533 534 4.641541 TGAGATGCGGATTTGTCAAATGAT 59.358 37.500 15.52 2.64 0.00 2.45
534 535 5.821995 TGAGATGCGGATTTGTCAAATGATA 59.178 36.000 15.52 0.41 0.00 2.15
535 536 6.017687 TGAGATGCGGATTTGTCAAATGATAG 60.018 38.462 15.52 5.31 0.00 2.08
581 582 3.156293 CAAGTCAAACATGGATGGTGGA 58.844 45.455 0.00 0.00 0.00 4.02
592 593 1.065418 GGATGGTGGATTGAACTCCGT 60.065 52.381 0.00 0.00 38.21 4.69
673 674 2.240040 CGTCAGTGTAGCGTACAGAAC 58.760 52.381 0.00 0.00 39.77 3.01
684 685 2.516923 CGTACAGAACGCTTCTACTGG 58.483 52.381 0.00 0.00 46.10 4.00
685 686 2.095364 CGTACAGAACGCTTCTACTGGT 60.095 50.000 0.00 0.00 46.10 4.00
686 687 2.726832 ACAGAACGCTTCTACTGGTC 57.273 50.000 0.00 0.00 38.11 4.02
715 722 9.868277 CTACAGGATATTGACCAGATTAAGATC 57.132 37.037 0.00 0.00 0.00 2.75
724 731 2.797156 CCAGATTAAGATCAGGCGAACG 59.203 50.000 0.00 0.00 32.94 3.95
732 739 0.179134 ATCAGGCGAACGCTGACTAC 60.179 55.000 18.14 1.34 41.60 2.73
733 740 1.080772 CAGGCGAACGCTGACTACA 60.081 57.895 18.14 0.00 41.60 2.74
734 741 0.666274 CAGGCGAACGCTGACTACAA 60.666 55.000 18.14 0.00 41.60 2.41
735 742 0.032952 AGGCGAACGCTGACTACAAA 59.967 50.000 18.14 0.00 41.60 2.83
736 743 0.863144 GGCGAACGCTGACTACAAAA 59.137 50.000 18.14 0.00 41.60 2.44
756 763 3.831715 AAATTACCGAAAGTGCTCTGC 57.168 42.857 0.00 0.00 0.00 4.26
757 764 2.472695 ATTACCGAAAGTGCTCTGCA 57.527 45.000 0.00 0.00 35.60 4.41
768 775 0.033920 TGCTCTGCACACGATTGACT 59.966 50.000 0.00 0.00 31.71 3.41
769 776 0.441533 GCTCTGCACACGATTGACTG 59.558 55.000 0.00 0.00 0.00 3.51
770 777 0.441533 CTCTGCACACGATTGACTGC 59.558 55.000 0.00 0.00 0.00 4.40
773 780 1.229975 TGCACACGATTGACTGCTGG 61.230 55.000 0.00 0.00 0.00 4.85
774 781 0.950555 GCACACGATTGACTGCTGGA 60.951 55.000 0.00 0.00 0.00 3.86
775 782 0.792640 CACACGATTGACTGCTGGAC 59.207 55.000 0.00 0.00 0.00 4.02
776 783 0.667487 ACACGATTGACTGCTGGACG 60.667 55.000 0.00 0.00 0.00 4.79
777 784 0.388520 CACGATTGACTGCTGGACGA 60.389 55.000 0.00 0.00 0.00 4.20
778 785 0.532573 ACGATTGACTGCTGGACGAT 59.467 50.000 0.00 0.00 0.00 3.73
779 786 0.926155 CGATTGACTGCTGGACGATG 59.074 55.000 0.00 0.00 0.00 3.84
780 787 1.737029 CGATTGACTGCTGGACGATGT 60.737 52.381 0.00 0.00 0.00 3.06
781 788 1.662629 GATTGACTGCTGGACGATGTG 59.337 52.381 0.00 0.00 0.00 3.21
784 791 1.630244 GACTGCTGGACGATGTGTGC 61.630 60.000 0.00 0.00 39.78 4.57
785 792 2.358615 TGCTGGACGATGTGTGCC 60.359 61.111 0.00 0.00 38.31 5.01
786 793 3.127533 GCTGGACGATGTGTGCCC 61.128 66.667 0.00 0.00 38.31 5.36
787 794 2.815211 CTGGACGATGTGTGCCCG 60.815 66.667 0.00 0.00 38.31 6.13
788 795 3.295304 CTGGACGATGTGTGCCCGA 62.295 63.158 0.00 0.00 38.31 5.14
789 796 2.813908 GGACGATGTGTGCCCGAC 60.814 66.667 0.00 0.00 31.75 4.79
790 797 3.179265 GACGATGTGTGCCCGACG 61.179 66.667 0.00 0.00 0.00 5.12
804 811 4.459089 GACGGGAGCAGGAGCCAC 62.459 72.222 0.00 0.00 43.56 5.01
806 813 4.767255 CGGGAGCAGGAGCCACAC 62.767 72.222 0.00 0.00 43.56 3.82
807 814 3.640407 GGGAGCAGGAGCCACACA 61.640 66.667 0.00 0.00 43.56 3.72
808 815 2.046507 GGAGCAGGAGCCACACAG 60.047 66.667 0.00 0.00 43.56 3.66
809 816 2.587247 GGAGCAGGAGCCACACAGA 61.587 63.158 0.00 0.00 43.56 3.41
810 817 1.601171 GAGCAGGAGCCACACAGAT 59.399 57.895 0.00 0.00 43.56 2.90
811 818 0.035630 GAGCAGGAGCCACACAGATT 60.036 55.000 0.00 0.00 43.56 2.40
812 819 1.208052 GAGCAGGAGCCACACAGATTA 59.792 52.381 0.00 0.00 43.56 1.75
813 820 1.630369 AGCAGGAGCCACACAGATTAA 59.370 47.619 0.00 0.00 43.56 1.40
814 821 2.040278 AGCAGGAGCCACACAGATTAAA 59.960 45.455 0.00 0.00 43.56 1.52
815 822 2.819608 GCAGGAGCCACACAGATTAAAA 59.180 45.455 0.00 0.00 33.58 1.52
816 823 3.255642 GCAGGAGCCACACAGATTAAAAA 59.744 43.478 0.00 0.00 33.58 1.94
817 824 4.798574 CAGGAGCCACACAGATTAAAAAC 58.201 43.478 0.00 0.00 0.00 2.43
818 825 3.826729 AGGAGCCACACAGATTAAAAACC 59.173 43.478 0.00 0.00 0.00 3.27
819 826 3.056821 GGAGCCACACAGATTAAAAACCC 60.057 47.826 0.00 0.00 0.00 4.11
820 827 2.897326 AGCCACACAGATTAAAAACCCC 59.103 45.455 0.00 0.00 0.00 4.95
821 828 2.630580 GCCACACAGATTAAAAACCCCA 59.369 45.455 0.00 0.00 0.00 4.96
822 829 3.306019 GCCACACAGATTAAAAACCCCAG 60.306 47.826 0.00 0.00 0.00 4.45
823 830 3.306019 CCACACAGATTAAAAACCCCAGC 60.306 47.826 0.00 0.00 0.00 4.85
824 831 3.573967 CACACAGATTAAAAACCCCAGCT 59.426 43.478 0.00 0.00 0.00 4.24
825 832 4.764823 CACACAGATTAAAAACCCCAGCTA 59.235 41.667 0.00 0.00 0.00 3.32
826 833 5.242838 CACACAGATTAAAAACCCCAGCTAA 59.757 40.000 0.00 0.00 0.00 3.09
827 834 6.016555 ACACAGATTAAAAACCCCAGCTAAT 58.983 36.000 0.00 0.00 0.00 1.73
828 835 6.152831 ACACAGATTAAAAACCCCAGCTAATC 59.847 38.462 0.00 0.00 31.82 1.75
829 836 5.656859 ACAGATTAAAAACCCCAGCTAATCC 59.343 40.000 0.00 0.00 31.97 3.01
830 837 5.893824 CAGATTAAAAACCCCAGCTAATCCT 59.106 40.000 0.00 0.00 31.97 3.24
831 838 7.060421 CAGATTAAAAACCCCAGCTAATCCTA 58.940 38.462 0.00 0.00 31.97 2.94
832 839 7.013369 CAGATTAAAAACCCCAGCTAATCCTAC 59.987 40.741 0.00 0.00 31.97 3.18
833 840 3.277142 AAAACCCCAGCTAATCCTACG 57.723 47.619 0.00 0.00 0.00 3.51
834 841 1.129058 AACCCCAGCTAATCCTACGG 58.871 55.000 0.00 0.00 0.00 4.02
835 842 0.031414 ACCCCAGCTAATCCTACGGT 60.031 55.000 0.00 0.00 0.00 4.83
836 843 0.680061 CCCCAGCTAATCCTACGGTC 59.320 60.000 0.00 0.00 0.00 4.79
837 844 1.705873 CCCAGCTAATCCTACGGTCT 58.294 55.000 0.00 0.00 0.00 3.85
838 845 2.490351 CCCCAGCTAATCCTACGGTCTA 60.490 54.545 0.00 0.00 0.00 2.59
839 846 2.557490 CCCAGCTAATCCTACGGTCTAC 59.443 54.545 0.00 0.00 0.00 2.59
840 847 2.557490 CCAGCTAATCCTACGGTCTACC 59.443 54.545 0.00 0.00 0.00 3.18
841 848 3.488363 CAGCTAATCCTACGGTCTACCT 58.512 50.000 0.00 0.00 0.00 3.08
842 849 3.253677 CAGCTAATCCTACGGTCTACCTG 59.746 52.174 0.00 0.00 0.00 4.00
843 850 3.137913 AGCTAATCCTACGGTCTACCTGA 59.862 47.826 0.00 0.00 0.00 3.86
844 851 3.252944 GCTAATCCTACGGTCTACCTGAC 59.747 52.174 0.00 0.00 44.63 3.51
845 852 3.666345 AATCCTACGGTCTACCTGACT 57.334 47.619 0.00 0.00 44.74 3.41
846 853 3.666345 ATCCTACGGTCTACCTGACTT 57.334 47.619 0.00 0.00 44.74 3.01
847 854 2.719739 TCCTACGGTCTACCTGACTTG 58.280 52.381 0.00 0.00 44.74 3.16
848 855 2.040813 TCCTACGGTCTACCTGACTTGT 59.959 50.000 0.00 0.00 44.74 3.16
849 856 2.422832 CCTACGGTCTACCTGACTTGTC 59.577 54.545 0.00 0.00 44.74 3.18
850 857 0.879765 ACGGTCTACCTGACTTGTCG 59.120 55.000 0.00 0.00 44.74 4.35
851 858 0.456312 CGGTCTACCTGACTTGTCGC 60.456 60.000 0.00 0.00 44.74 5.19
852 859 0.108756 GGTCTACCTGACTTGTCGCC 60.109 60.000 0.00 0.00 44.74 5.54
853 860 0.889306 GTCTACCTGACTTGTCGCCT 59.111 55.000 0.00 0.00 42.21 5.52
854 861 0.888619 TCTACCTGACTTGTCGCCTG 59.111 55.000 0.00 0.00 0.00 4.85
855 862 0.603569 CTACCTGACTTGTCGCCTGT 59.396 55.000 0.00 0.00 0.00 4.00
856 863 0.317160 TACCTGACTTGTCGCCTGTG 59.683 55.000 0.00 0.00 0.00 3.66
857 864 1.669115 CCTGACTTGTCGCCTGTGG 60.669 63.158 0.00 0.00 0.00 4.17
858 865 1.669115 CTGACTTGTCGCCTGTGGG 60.669 63.158 0.00 0.00 0.00 4.61
859 866 2.383245 CTGACTTGTCGCCTGTGGGT 62.383 60.000 0.00 0.00 34.45 4.51
860 867 1.668151 GACTTGTCGCCTGTGGGTC 60.668 63.158 0.00 0.00 34.45 4.46
861 868 2.738521 CTTGTCGCCTGTGGGTCG 60.739 66.667 0.00 0.00 34.90 4.79
862 869 3.515316 CTTGTCGCCTGTGGGTCGT 62.515 63.158 0.00 0.00 35.06 4.34
863 870 3.800685 TTGTCGCCTGTGGGTCGTG 62.801 63.158 0.00 0.00 35.06 4.35
869 876 4.293648 CTGTGGGTCGTGCGTCCA 62.294 66.667 9.71 7.54 0.00 4.02
870 877 3.589654 CTGTGGGTCGTGCGTCCAT 62.590 63.158 9.71 0.00 32.71 3.41
871 878 2.813908 GTGGGTCGTGCGTCCATC 60.814 66.667 9.71 0.00 32.71 3.51
872 879 4.077184 TGGGTCGTGCGTCCATCC 62.077 66.667 9.71 0.00 0.00 3.51
874 881 4.430765 GGTCGTGCGTCCATCCGT 62.431 66.667 3.21 0.00 0.00 4.69
875 882 2.879462 GTCGTGCGTCCATCCGTC 60.879 66.667 0.00 0.00 0.00 4.79
876 883 4.470170 TCGTGCGTCCATCCGTCG 62.470 66.667 0.00 0.00 0.00 5.12
877 884 4.771356 CGTGCGTCCATCCGTCGT 62.771 66.667 0.00 0.00 0.00 4.34
878 885 3.179265 GTGCGTCCATCCGTCGTG 61.179 66.667 0.00 0.00 0.00 4.35
879 886 3.676605 TGCGTCCATCCGTCGTGT 61.677 61.111 0.00 0.00 0.00 4.49
880 887 3.179265 GCGTCCATCCGTCGTGTG 61.179 66.667 0.00 0.00 0.00 3.82
881 888 2.257371 CGTCCATCCGTCGTGTGT 59.743 61.111 0.00 0.00 0.00 3.72
882 889 1.503091 CGTCCATCCGTCGTGTGTA 59.497 57.895 0.00 0.00 0.00 2.90
883 890 0.099968 CGTCCATCCGTCGTGTGTAT 59.900 55.000 0.00 0.00 0.00 2.29
884 891 1.331447 CGTCCATCCGTCGTGTGTATA 59.669 52.381 0.00 0.00 0.00 1.47
885 892 2.601504 CGTCCATCCGTCGTGTGTATAG 60.602 54.545 0.00 0.00 0.00 1.31
886 893 1.335810 TCCATCCGTCGTGTGTATAGC 59.664 52.381 0.00 0.00 0.00 2.97
887 894 1.066454 CCATCCGTCGTGTGTATAGCA 59.934 52.381 0.00 0.00 0.00 3.49
888 895 2.385315 CATCCGTCGTGTGTATAGCAG 58.615 52.381 0.00 0.00 0.00 4.24
889 896 1.456296 TCCGTCGTGTGTATAGCAGT 58.544 50.000 0.00 0.00 0.00 4.40
890 897 1.131693 TCCGTCGTGTGTATAGCAGTG 59.868 52.381 0.00 0.00 0.00 3.66
891 898 0.914551 CGTCGTGTGTATAGCAGTGC 59.085 55.000 7.13 7.13 0.00 4.40
892 899 1.467543 CGTCGTGTGTATAGCAGTGCT 60.468 52.381 23.44 23.44 43.41 4.40
893 900 2.186076 GTCGTGTGTATAGCAGTGCTC 58.814 52.381 23.64 8.26 40.44 4.26
926 933 1.211212 TCCTGCTGGTCTACTACGCTA 59.789 52.381 9.73 0.00 34.23 4.26
947 954 1.876453 GCTACACGCACACACAGACG 61.876 60.000 0.00 0.00 38.92 4.18
988 997 1.791103 GCTCGGATCGGAGGTCAGAG 61.791 65.000 26.22 6.17 39.78 3.35
1005 1020 1.153086 AGTCAATCGAGCCATGGCC 60.153 57.895 33.14 22.29 43.17 5.36
1017 1032 2.444706 ATGGCCGAGCTAGCTCCA 60.445 61.111 33.57 27.70 39.77 3.86
1037 1052 1.558756 ACTCTCCATGCTCTTCCTTGG 59.441 52.381 0.00 0.00 0.00 3.61
1044 1059 1.303970 GCTCTTCCTTGGCCTGCTT 60.304 57.895 3.32 0.00 0.00 3.91
1080 1095 0.465097 TCTACCTCATCCGGTCGTCC 60.465 60.000 0.00 0.00 38.49 4.79
1796 1832 2.639347 TCCAGGAGCATCAAGAGAACAA 59.361 45.455 0.00 0.00 36.25 2.83
1919 1958 1.630148 GCAGTCATCGTCGTAAGCTT 58.370 50.000 3.48 3.48 37.18 3.74
1939 1996 4.442733 GCTTCTCATCTCGTACTACAATGC 59.557 45.833 0.00 0.00 0.00 3.56
1947 2004 4.645136 TCTCGTACTACAATGCAGGAGAAT 59.355 41.667 0.00 0.00 31.14 2.40
1975 2051 4.983090 CGTACGTCGGCGACTAAT 57.017 55.556 33.90 22.38 42.00 1.73
2350 2440 3.132139 CGGAGGAGTTCTCGCCGA 61.132 66.667 20.09 0.00 43.34 5.54
2670 2769 2.262423 GCATGAAGCCTTAGGGTAGG 57.738 55.000 2.41 0.00 37.23 3.18
2671 2770 1.202818 GCATGAAGCCTTAGGGTAGGG 60.203 57.143 2.41 0.00 37.23 3.53
2681 2780 0.105408 TAGGGTAGGGCGCGAAATTC 59.895 55.000 12.10 0.00 34.93 2.17
2825 2950 3.695830 TCTGGACAACACCTATTCCAC 57.304 47.619 0.00 0.00 34.36 4.02
2833 2958 3.933861 ACACCTATTCCACTCCATTCC 57.066 47.619 0.00 0.00 0.00 3.01
2835 2960 3.788142 ACACCTATTCCACTCCATTCCAT 59.212 43.478 0.00 0.00 0.00 3.41
2836 2961 4.230502 ACACCTATTCCACTCCATTCCATT 59.769 41.667 0.00 0.00 0.00 3.16
2837 2962 5.431731 ACACCTATTCCACTCCATTCCATTA 59.568 40.000 0.00 0.00 0.00 1.90
2838 2963 5.765182 CACCTATTCCACTCCATTCCATTAC 59.235 44.000 0.00 0.00 0.00 1.89
2839 2964 5.431731 ACCTATTCCACTCCATTCCATTACA 59.568 40.000 0.00 0.00 0.00 2.41
2840 2965 6.103205 ACCTATTCCACTCCATTCCATTACAT 59.897 38.462 0.00 0.00 0.00 2.29
2841 2966 7.006509 CCTATTCCACTCCATTCCATTACATT 58.993 38.462 0.00 0.00 0.00 2.71
2842 2967 6.966534 ATTCCACTCCATTCCATTACATTC 57.033 37.500 0.00 0.00 0.00 2.67
2843 2968 4.792068 TCCACTCCATTCCATTACATTCC 58.208 43.478 0.00 0.00 0.00 3.01
2844 2969 4.229353 TCCACTCCATTCCATTACATTCCA 59.771 41.667 0.00 0.00 0.00 3.53
2845 2970 4.955450 CCACTCCATTCCATTACATTCCAA 59.045 41.667 0.00 0.00 0.00 3.53
2846 2971 5.068198 CCACTCCATTCCATTACATTCCAAG 59.932 44.000 0.00 0.00 0.00 3.61
2847 2972 5.653769 CACTCCATTCCATTACATTCCAAGT 59.346 40.000 0.00 0.00 0.00 3.16
2848 2973 6.828273 CACTCCATTCCATTACATTCCAAGTA 59.172 38.462 0.00 0.00 0.00 2.24
2849 2974 6.828785 ACTCCATTCCATTACATTCCAAGTAC 59.171 38.462 0.00 0.00 0.00 2.73
2850 2975 5.820423 TCCATTCCATTACATTCCAAGTACG 59.180 40.000 0.00 0.00 0.00 3.67
2851 2976 5.820423 CCATTCCATTACATTCCAAGTACGA 59.180 40.000 0.00 0.00 0.00 3.43
2859 2984 7.770801 TTACATTCCAAGTACGAATCAGATG 57.229 36.000 0.00 0.00 0.00 2.90
2871 2996 3.004629 CGAATCAGATGCTCAGAGCTACT 59.995 47.826 23.15 17.72 42.97 2.57
2872 2997 4.215185 CGAATCAGATGCTCAGAGCTACTA 59.785 45.833 23.15 3.12 42.97 1.82
2873 2998 5.452078 AATCAGATGCTCAGAGCTACTAC 57.548 43.478 23.15 9.71 42.97 2.73
2875 3000 4.468713 TCAGATGCTCAGAGCTACTACAT 58.531 43.478 23.15 7.16 42.97 2.29
2876 3001 4.277921 TCAGATGCTCAGAGCTACTACATG 59.722 45.833 23.15 11.68 42.97 3.21
2877 3002 3.573538 AGATGCTCAGAGCTACTACATGG 59.426 47.826 23.15 0.00 42.97 3.66
2880 3005 3.769300 TGCTCAGAGCTACTACATGGAAA 59.231 43.478 23.15 0.00 42.97 3.13
2881 3006 4.222810 TGCTCAGAGCTACTACATGGAAAA 59.777 41.667 23.15 0.00 42.97 2.29
2883 3008 5.064071 GCTCAGAGCTACTACATGGAAAAAC 59.936 44.000 15.78 0.00 38.45 2.43
2884 3009 6.109156 TCAGAGCTACTACATGGAAAAACA 57.891 37.500 0.00 0.00 0.00 2.83
2885 3010 6.530120 TCAGAGCTACTACATGGAAAAACAA 58.470 36.000 0.00 0.00 0.00 2.83
2886 3011 6.995686 TCAGAGCTACTACATGGAAAAACAAA 59.004 34.615 0.00 0.00 0.00 2.83
2887 3012 7.041372 TCAGAGCTACTACATGGAAAAACAAAC 60.041 37.037 0.00 0.00 0.00 2.93
2963 3089 8.100791 TGCTTCTGTACTTCTGTTATTTGGTAT 58.899 33.333 0.00 0.00 0.00 2.73
2964 3090 9.595823 GCTTCTGTACTTCTGTTATTTGGTATA 57.404 33.333 0.00 0.00 0.00 1.47
3022 3148 4.333926 GGTTTTCTCAGGTCTGACATATGC 59.666 45.833 10.38 0.00 35.46 3.14
3032 3158 5.994054 AGGTCTGACATATGCATGATACAAC 59.006 40.000 10.16 0.00 35.96 3.32
3176 3302 7.976734 ACTGTCTTTAGTATCTGAGCATGTAAC 59.023 37.037 0.00 0.00 0.00 2.50
3340 3466 2.093288 TGCACCTGTTTGAAAAATGGCA 60.093 40.909 0.00 0.00 0.00 4.92
3372 3498 3.127895 TGCAGTGGCGGTTGAATTTATAC 59.872 43.478 0.00 0.00 45.35 1.47
3373 3499 3.377172 GCAGTGGCGGTTGAATTTATACT 59.623 43.478 0.00 0.00 0.00 2.12
3374 3500 4.142469 GCAGTGGCGGTTGAATTTATACTT 60.142 41.667 0.00 0.00 0.00 2.24
3375 3501 5.621329 GCAGTGGCGGTTGAATTTATACTTT 60.621 40.000 0.00 0.00 0.00 2.66
3376 3502 6.403855 GCAGTGGCGGTTGAATTTATACTTTA 60.404 38.462 0.00 0.00 0.00 1.85
3377 3503 7.681065 GCAGTGGCGGTTGAATTTATACTTTAT 60.681 37.037 0.00 0.00 0.00 1.40
3378 3504 8.832521 CAGTGGCGGTTGAATTTATACTTTATA 58.167 33.333 0.00 0.00 0.00 0.98
3392 3518 9.893634 TTTATACTTTATAGGCAGCACTAACAA 57.106 29.630 0.00 0.00 0.00 2.83
3396 3522 2.099141 TAGGCAGCACTAACAAGCAG 57.901 50.000 0.00 0.00 0.00 4.24
3407 3533 2.057137 AACAAGCAGAAGCAAGTGGA 57.943 45.000 0.00 0.00 45.49 4.02
3408 3534 1.602311 ACAAGCAGAAGCAAGTGGAG 58.398 50.000 0.00 0.00 45.49 3.86
3410 3536 2.224606 CAAGCAGAAGCAAGTGGAGAA 58.775 47.619 0.00 0.00 45.49 2.87
3437 3563 4.455533 CAGATAACAAGTGCTGGCAAAGTA 59.544 41.667 0.00 0.00 0.00 2.24
3509 3635 2.087646 GAGATGGCACCAAGGAGAAAC 58.912 52.381 0.00 0.00 0.00 2.78
3560 3686 1.091771 AATCACCCGCTGATTCTGCG 61.092 55.000 25.42 25.42 45.08 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.999009 CGTATGTAGTTTGTAGTGAAATCTCTA 57.001 33.333 0.00 0.00 0.00 2.43
17 18 7.974501 CCGTATGTAGTTTGTAGTGAAATCTCT 59.025 37.037 0.00 0.00 0.00 3.10
18 19 7.972277 TCCGTATGTAGTTTGTAGTGAAATCTC 59.028 37.037 0.00 0.00 0.00 2.75
19 20 7.833786 TCCGTATGTAGTTTGTAGTGAAATCT 58.166 34.615 0.00 0.00 0.00 2.40
20 21 8.540492 CATCCGTATGTAGTTTGTAGTGAAATC 58.460 37.037 0.00 0.00 0.00 2.17
21 22 8.038944 ACATCCGTATGTAGTTTGTAGTGAAAT 58.961 33.333 0.00 0.00 44.66 2.17
22 23 7.380536 ACATCCGTATGTAGTTTGTAGTGAAA 58.619 34.615 0.00 0.00 44.66 2.69
23 24 6.927416 ACATCCGTATGTAGTTTGTAGTGAA 58.073 36.000 0.00 0.00 44.66 3.18
24 25 6.519679 ACATCCGTATGTAGTTTGTAGTGA 57.480 37.500 0.00 0.00 44.66 3.41
61 62 9.507329 AGCAAAAAGAATGAATCTACACTCTAA 57.493 29.630 0.00 0.00 37.42 2.10
62 63 9.155975 GAGCAAAAAGAATGAATCTACACTCTA 57.844 33.333 0.00 0.00 37.42 2.43
63 64 7.120432 GGAGCAAAAAGAATGAATCTACACTCT 59.880 37.037 0.00 0.00 37.42 3.24
64 65 7.247019 GGAGCAAAAAGAATGAATCTACACTC 58.753 38.462 0.00 0.00 37.42 3.51
65 66 6.128172 CGGAGCAAAAAGAATGAATCTACACT 60.128 38.462 0.00 0.00 37.42 3.55
66 67 6.024049 CGGAGCAAAAAGAATGAATCTACAC 58.976 40.000 0.00 0.00 37.42 2.90
67 68 5.705441 ACGGAGCAAAAAGAATGAATCTACA 59.295 36.000 0.00 0.00 37.42 2.74
68 69 6.183309 ACGGAGCAAAAAGAATGAATCTAC 57.817 37.500 0.00 0.00 37.42 2.59
69 70 7.552687 ACATACGGAGCAAAAAGAATGAATCTA 59.447 33.333 0.00 0.00 37.42 1.98
70 71 6.375455 ACATACGGAGCAAAAAGAATGAATCT 59.625 34.615 0.00 0.00 41.32 2.40
71 72 6.555315 ACATACGGAGCAAAAAGAATGAATC 58.445 36.000 0.00 0.00 0.00 2.52
72 73 6.515272 ACATACGGAGCAAAAAGAATGAAT 57.485 33.333 0.00 0.00 0.00 2.57
73 74 5.957842 ACATACGGAGCAAAAAGAATGAA 57.042 34.783 0.00 0.00 0.00 2.57
74 75 6.170506 ACTACATACGGAGCAAAAAGAATGA 58.829 36.000 0.00 0.00 0.00 2.57
75 76 6.422776 ACTACATACGGAGCAAAAAGAATG 57.577 37.500 0.00 0.00 0.00 2.67
76 77 5.585047 GGACTACATACGGAGCAAAAAGAAT 59.415 40.000 0.00 0.00 0.00 2.40
77 78 4.933400 GGACTACATACGGAGCAAAAAGAA 59.067 41.667 0.00 0.00 0.00 2.52
78 79 4.020928 TGGACTACATACGGAGCAAAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
79 80 4.250464 TGGACTACATACGGAGCAAAAAG 58.750 43.478 0.00 0.00 0.00 2.27
80 81 4.274602 TGGACTACATACGGAGCAAAAA 57.725 40.909 0.00 0.00 0.00 1.94
81 82 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
82 83 4.500887 GCTATGGACTACATACGGAGCAAA 60.501 45.833 0.00 0.00 41.03 3.68
83 84 3.005472 GCTATGGACTACATACGGAGCAA 59.995 47.826 0.00 0.00 41.03 3.91
84 85 2.557056 GCTATGGACTACATACGGAGCA 59.443 50.000 0.00 0.00 41.03 4.26
85 86 2.094649 GGCTATGGACTACATACGGAGC 60.095 54.545 0.00 0.00 41.03 4.70
86 87 2.161808 CGGCTATGGACTACATACGGAG 59.838 54.545 0.00 0.00 41.03 4.63
87 88 2.156917 CGGCTATGGACTACATACGGA 58.843 52.381 0.00 0.00 41.03 4.69
88 89 2.156917 TCGGCTATGGACTACATACGG 58.843 52.381 0.00 0.00 41.03 4.02
89 90 3.909776 TTCGGCTATGGACTACATACG 57.090 47.619 0.00 0.00 41.03 3.06
90 91 5.416326 AGAGATTCGGCTATGGACTACATAC 59.584 44.000 0.00 0.00 41.03 2.39
91 92 5.571285 AGAGATTCGGCTATGGACTACATA 58.429 41.667 0.00 0.00 41.03 2.29
92 93 4.411927 AGAGATTCGGCTATGGACTACAT 58.588 43.478 0.00 0.00 43.68 2.29
93 94 3.833732 AGAGATTCGGCTATGGACTACA 58.166 45.455 0.00 0.00 0.00 2.74
94 95 5.961396 TTAGAGATTCGGCTATGGACTAC 57.039 43.478 0.00 0.00 0.00 2.73
95 96 6.971726 TTTTAGAGATTCGGCTATGGACTA 57.028 37.500 0.00 0.00 0.00 2.59
96 97 5.871396 TTTTAGAGATTCGGCTATGGACT 57.129 39.130 0.00 0.00 0.00 3.85
117 118 0.032615 TGCCCTGGACACACCTTTTT 60.033 50.000 0.00 0.00 39.86 1.94
118 119 0.755327 GTGCCCTGGACACACCTTTT 60.755 55.000 8.37 0.00 37.96 2.27
119 120 1.152756 GTGCCCTGGACACACCTTT 60.153 57.895 8.37 0.00 37.96 3.11
120 121 2.515901 GTGCCCTGGACACACCTT 59.484 61.111 8.37 0.00 37.96 3.50
123 124 1.192146 TAGAGGTGCCCTGGACACAC 61.192 60.000 15.20 10.16 39.87 3.82
124 125 0.472925 TTAGAGGTGCCCTGGACACA 60.473 55.000 15.20 0.00 39.87 3.72
125 126 0.690762 TTTAGAGGTGCCCTGGACAC 59.309 55.000 4.35 4.35 31.76 3.67
126 127 1.281867 CATTTAGAGGTGCCCTGGACA 59.718 52.381 0.00 0.00 31.76 4.02
127 128 1.282157 ACATTTAGAGGTGCCCTGGAC 59.718 52.381 0.00 0.00 31.76 4.02
128 129 1.281867 CACATTTAGAGGTGCCCTGGA 59.718 52.381 0.00 0.00 31.76 3.86
129 130 1.755179 CACATTTAGAGGTGCCCTGG 58.245 55.000 0.00 0.00 31.76 4.45
135 136 7.254590 GCAATAACTAGAGCACATTTAGAGGTG 60.255 40.741 0.00 0.00 40.40 4.00
136 137 6.763610 GCAATAACTAGAGCACATTTAGAGGT 59.236 38.462 0.00 0.00 0.00 3.85
137 138 6.763135 TGCAATAACTAGAGCACATTTAGAGG 59.237 38.462 0.00 0.00 31.05 3.69
138 139 7.776933 TGCAATAACTAGAGCACATTTAGAG 57.223 36.000 0.00 0.00 31.05 2.43
147 148 5.755375 GCTTAGATGTGCAATAACTAGAGCA 59.245 40.000 0.00 0.00 34.10 4.26
148 149 5.107683 CGCTTAGATGTGCAATAACTAGAGC 60.108 44.000 0.00 1.79 0.00 4.09
149 150 5.403766 CCGCTTAGATGTGCAATAACTAGAG 59.596 44.000 0.00 0.00 0.00 2.43
150 151 5.289595 CCGCTTAGATGTGCAATAACTAGA 58.710 41.667 0.00 0.00 0.00 2.43
151 152 4.449068 CCCGCTTAGATGTGCAATAACTAG 59.551 45.833 0.00 0.00 0.00 2.57
152 153 4.141801 ACCCGCTTAGATGTGCAATAACTA 60.142 41.667 0.00 0.00 0.00 2.24
153 154 3.206150 CCCGCTTAGATGTGCAATAACT 58.794 45.455 0.00 0.00 0.00 2.24
154 155 2.943033 ACCCGCTTAGATGTGCAATAAC 59.057 45.455 0.00 0.00 0.00 1.89
155 156 2.942376 CACCCGCTTAGATGTGCAATAA 59.058 45.455 0.00 0.00 0.00 1.40
156 157 2.169561 TCACCCGCTTAGATGTGCAATA 59.830 45.455 0.00 0.00 0.00 1.90
157 158 1.065491 TCACCCGCTTAGATGTGCAAT 60.065 47.619 0.00 0.00 0.00 3.56
158 159 0.323302 TCACCCGCTTAGATGTGCAA 59.677 50.000 0.00 0.00 0.00 4.08
159 160 0.323302 TTCACCCGCTTAGATGTGCA 59.677 50.000 0.00 0.00 0.00 4.57
160 161 1.599542 GATTCACCCGCTTAGATGTGC 59.400 52.381 0.00 0.00 0.00 4.57
161 162 2.905075 TGATTCACCCGCTTAGATGTG 58.095 47.619 0.00 0.00 0.00 3.21
162 163 3.535561 CTTGATTCACCCGCTTAGATGT 58.464 45.455 0.00 0.00 0.00 3.06
163 164 2.289002 GCTTGATTCACCCGCTTAGATG 59.711 50.000 0.00 0.00 0.00 2.90
164 165 2.092968 TGCTTGATTCACCCGCTTAGAT 60.093 45.455 0.00 0.00 0.00 1.98
165 166 1.277842 TGCTTGATTCACCCGCTTAGA 59.722 47.619 0.00 0.00 0.00 2.10
166 167 1.737838 TGCTTGATTCACCCGCTTAG 58.262 50.000 0.00 0.00 0.00 2.18
167 168 2.418368 ATGCTTGATTCACCCGCTTA 57.582 45.000 0.00 0.00 0.00 3.09
168 169 2.418368 TATGCTTGATTCACCCGCTT 57.582 45.000 0.00 0.00 0.00 4.68
169 170 2.418368 TTATGCTTGATTCACCCGCT 57.582 45.000 0.00 0.00 0.00 5.52
170 171 3.502191 TTTTATGCTTGATTCACCCGC 57.498 42.857 0.00 0.00 0.00 6.13
214 215 9.119418 TGATCATACATTAAAATTCGTGTGGAT 57.881 29.630 0.00 0.00 0.00 3.41
215 216 8.499403 TGATCATACATTAAAATTCGTGTGGA 57.501 30.769 0.00 0.00 0.00 4.02
216 217 9.734620 ATTGATCATACATTAAAATTCGTGTGG 57.265 29.630 0.00 0.00 0.00 4.17
249 250 9.836864 TGACATAAATATTGCACATCTAAGTCT 57.163 29.630 0.00 0.00 0.00 3.24
250 251 9.869844 GTGACATAAATATTGCACATCTAAGTC 57.130 33.333 0.00 0.00 0.00 3.01
251 252 9.394767 TGTGACATAAATATTGCACATCTAAGT 57.605 29.630 0.00 0.00 31.17 2.24
257 258 9.783081 TCTAGATGTGACATAAATATTGCACAT 57.217 29.630 15.14 15.14 40.82 3.21
258 259 9.783081 ATCTAGATGTGACATAAATATTGCACA 57.217 29.630 3.89 0.00 36.39 4.57
306 307 7.889600 TCCCTCCGTTACCAAATATAAGTTTTT 59.110 33.333 0.00 0.00 0.00 1.94
307 308 7.404481 TCCCTCCGTTACCAAATATAAGTTTT 58.596 34.615 0.00 0.00 0.00 2.43
308 309 6.961042 TCCCTCCGTTACCAAATATAAGTTT 58.039 36.000 0.00 0.00 0.00 2.66
309 310 6.564557 TCCCTCCGTTACCAAATATAAGTT 57.435 37.500 0.00 0.00 0.00 2.66
310 311 6.564557 TTCCCTCCGTTACCAAATATAAGT 57.435 37.500 0.00 0.00 0.00 2.24
314 315 8.832735 ACATATATTCCCTCCGTTACCAAATAT 58.167 33.333 0.00 0.00 0.00 1.28
315 316 8.098286 CACATATATTCCCTCCGTTACCAAATA 58.902 37.037 0.00 0.00 0.00 1.40
316 317 6.940298 CACATATATTCCCTCCGTTACCAAAT 59.060 38.462 0.00 0.00 0.00 2.32
317 318 6.126710 ACACATATATTCCCTCCGTTACCAAA 60.127 38.462 0.00 0.00 0.00 3.28
318 319 5.367352 ACACATATATTCCCTCCGTTACCAA 59.633 40.000 0.00 0.00 0.00 3.67
319 320 4.903049 ACACATATATTCCCTCCGTTACCA 59.097 41.667 0.00 0.00 0.00 3.25
320 321 5.011329 TGACACATATATTCCCTCCGTTACC 59.989 44.000 0.00 0.00 0.00 2.85
321 322 6.015688 TCTGACACATATATTCCCTCCGTTAC 60.016 42.308 0.00 0.00 0.00 2.50
322 323 6.015688 GTCTGACACATATATTCCCTCCGTTA 60.016 42.308 2.24 0.00 0.00 3.18
323 324 4.899457 TCTGACACATATATTCCCTCCGTT 59.101 41.667 0.00 0.00 0.00 4.44
324 325 4.281182 GTCTGACACATATATTCCCTCCGT 59.719 45.833 2.24 0.00 0.00 4.69
325 326 4.280929 TGTCTGACACATATATTCCCTCCG 59.719 45.833 6.36 0.00 0.00 4.63
326 327 5.808366 TGTCTGACACATATATTCCCTCC 57.192 43.478 6.36 0.00 0.00 4.30
327 328 7.220030 ACATTGTCTGACACATATATTCCCTC 58.780 38.462 10.56 0.00 33.90 4.30
328 329 7.141758 ACATTGTCTGACACATATATTCCCT 57.858 36.000 10.56 0.00 33.90 4.20
336 337 9.476202 GCAATACTATACATTGTCTGACACATA 57.524 33.333 10.56 3.82 36.08 2.29
337 338 7.442364 GGCAATACTATACATTGTCTGACACAT 59.558 37.037 10.56 4.97 35.57 3.21
338 339 6.761242 GGCAATACTATACATTGTCTGACACA 59.239 38.462 10.56 2.70 35.57 3.72
339 340 6.761242 TGGCAATACTATACATTGTCTGACAC 59.239 38.462 10.56 0.00 38.52 3.67
340 341 6.883744 TGGCAATACTATACATTGTCTGACA 58.116 36.000 6.36 6.36 38.52 3.58
341 342 7.969536 ATGGCAATACTATACATTGTCTGAC 57.030 36.000 0.00 0.00 38.52 3.51
342 343 8.870116 ACTATGGCAATACTATACATTGTCTGA 58.130 33.333 0.00 0.00 38.52 3.27
345 346 9.587772 CCTACTATGGCAATACTATACATTGTC 57.412 37.037 0.00 0.00 38.26 3.18
346 347 8.540388 CCCTACTATGGCAATACTATACATTGT 58.460 37.037 0.00 0.00 36.08 2.71
347 348 8.948631 CCCTACTATGGCAATACTATACATTG 57.051 38.462 0.00 0.00 36.63 2.82
373 374 1.447317 GGGGATGTGCGCAGGTATTG 61.447 60.000 12.22 0.00 0.00 1.90
374 375 1.152963 GGGGATGTGCGCAGGTATT 60.153 57.895 12.22 0.00 0.00 1.89
375 376 2.510906 GGGGATGTGCGCAGGTAT 59.489 61.111 12.22 5.77 0.00 2.73
376 377 3.792736 GGGGGATGTGCGCAGGTA 61.793 66.667 12.22 0.00 0.00 3.08
378 379 4.738998 TTGGGGGATGTGCGCAGG 62.739 66.667 12.22 0.00 0.00 4.85
379 380 2.440796 ATTGGGGGATGTGCGCAG 60.441 61.111 12.22 0.00 0.00 5.18
380 381 2.440065 GATTGGGGGATGTGCGCA 60.440 61.111 5.66 5.66 0.00 6.09
381 382 3.585990 CGATTGGGGGATGTGCGC 61.586 66.667 0.00 0.00 0.00 6.09
382 383 1.029408 TTTCGATTGGGGGATGTGCG 61.029 55.000 0.00 0.00 0.00 5.34
383 384 1.067516 CATTTCGATTGGGGGATGTGC 59.932 52.381 0.00 0.00 0.00 4.57
384 385 1.067516 GCATTTCGATTGGGGGATGTG 59.932 52.381 0.00 0.00 0.00 3.21
385 386 1.402787 GCATTTCGATTGGGGGATGT 58.597 50.000 0.00 0.00 0.00 3.06
386 387 0.311790 CGCATTTCGATTGGGGGATG 59.688 55.000 5.37 0.00 41.67 3.51
387 388 1.455383 GCGCATTTCGATTGGGGGAT 61.455 55.000 0.30 0.00 41.67 3.85
388 389 2.118404 GCGCATTTCGATTGGGGGA 61.118 57.895 0.30 0.00 41.67 4.81
389 390 2.412937 GCGCATTTCGATTGGGGG 59.587 61.111 0.30 2.04 41.67 5.40
390 391 2.412937 GGCGCATTTCGATTGGGG 59.587 61.111 10.83 3.54 41.67 4.96
391 392 2.024588 CGGCGCATTTCGATTGGG 59.975 61.111 10.83 8.13 41.67 4.12
392 393 2.651863 GCGGCGCATTTCGATTGG 60.652 61.111 29.21 0.00 41.67 3.16
393 394 2.100023 TGCGGCGCATTTCGATTG 59.900 55.556 33.07 0.00 41.67 2.67
402 403 2.899838 GTAATGGGATGCGGCGCA 60.900 61.111 38.09 38.09 44.86 6.09
403 404 3.660111 GGTAATGGGATGCGGCGC 61.660 66.667 27.44 27.44 0.00 6.53
404 405 2.978010 GGGTAATGGGATGCGGCG 60.978 66.667 0.51 0.51 0.00 6.46
405 406 2.978010 CGGGTAATGGGATGCGGC 60.978 66.667 0.00 0.00 0.00 6.53
406 407 2.107041 TAGCGGGTAATGGGATGCGG 62.107 60.000 0.00 0.00 0.00 5.69
407 408 0.670546 CTAGCGGGTAATGGGATGCG 60.671 60.000 0.00 0.00 0.00 4.73
408 409 0.685097 TCTAGCGGGTAATGGGATGC 59.315 55.000 0.00 0.00 0.00 3.91
409 410 3.485463 TTTCTAGCGGGTAATGGGATG 57.515 47.619 0.00 0.00 0.00 3.51
410 411 4.204799 GTTTTTCTAGCGGGTAATGGGAT 58.795 43.478 0.00 0.00 0.00 3.85
411 412 3.613030 GTTTTTCTAGCGGGTAATGGGA 58.387 45.455 0.00 0.00 0.00 4.37
412 413 2.686405 GGTTTTTCTAGCGGGTAATGGG 59.314 50.000 0.00 0.00 0.00 4.00
413 414 3.128068 GTGGTTTTTCTAGCGGGTAATGG 59.872 47.826 0.00 0.00 0.00 3.16
414 415 4.007659 AGTGGTTTTTCTAGCGGGTAATG 58.992 43.478 0.00 0.00 0.00 1.90
415 416 4.019591 AGAGTGGTTTTTCTAGCGGGTAAT 60.020 41.667 0.00 0.00 0.00 1.89
416 417 3.325716 AGAGTGGTTTTTCTAGCGGGTAA 59.674 43.478 0.00 0.00 0.00 2.85
417 418 2.901839 AGAGTGGTTTTTCTAGCGGGTA 59.098 45.455 0.00 0.00 0.00 3.69
418 419 1.697982 AGAGTGGTTTTTCTAGCGGGT 59.302 47.619 0.00 0.00 0.00 5.28
419 420 2.347731 GAGAGTGGTTTTTCTAGCGGG 58.652 52.381 0.00 0.00 0.00 6.13
420 421 2.028020 AGGAGAGTGGTTTTTCTAGCGG 60.028 50.000 0.00 0.00 0.00 5.52
421 422 3.056465 AGAGGAGAGTGGTTTTTCTAGCG 60.056 47.826 0.00 0.00 0.00 4.26
422 423 4.545208 AGAGGAGAGTGGTTTTTCTAGC 57.455 45.455 0.00 0.00 0.00 3.42
423 424 6.102897 TGAAGAGGAGAGTGGTTTTTCTAG 57.897 41.667 0.00 0.00 0.00 2.43
424 425 5.511545 GCTGAAGAGGAGAGTGGTTTTTCTA 60.512 44.000 0.00 0.00 0.00 2.10
425 426 4.745172 GCTGAAGAGGAGAGTGGTTTTTCT 60.745 45.833 0.00 0.00 0.00 2.52
426 427 3.500299 GCTGAAGAGGAGAGTGGTTTTTC 59.500 47.826 0.00 0.00 0.00 2.29
427 428 3.481453 GCTGAAGAGGAGAGTGGTTTTT 58.519 45.455 0.00 0.00 0.00 1.94
428 429 2.224646 GGCTGAAGAGGAGAGTGGTTTT 60.225 50.000 0.00 0.00 0.00 2.43
429 430 1.349357 GGCTGAAGAGGAGAGTGGTTT 59.651 52.381 0.00 0.00 0.00 3.27
430 431 0.980423 GGCTGAAGAGGAGAGTGGTT 59.020 55.000 0.00 0.00 0.00 3.67
431 432 0.178921 TGGCTGAAGAGGAGAGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
432 433 0.248843 GTGGCTGAAGAGGAGAGTGG 59.751 60.000 0.00 0.00 0.00 4.00
433 434 0.248843 GGTGGCTGAAGAGGAGAGTG 59.751 60.000 0.00 0.00 0.00 3.51
434 435 1.254284 CGGTGGCTGAAGAGGAGAGT 61.254 60.000 0.00 0.00 0.00 3.24
435 436 1.515020 CGGTGGCTGAAGAGGAGAG 59.485 63.158 0.00 0.00 0.00 3.20
436 437 2.650116 GCGGTGGCTGAAGAGGAGA 61.650 63.158 0.00 0.00 35.83 3.71
437 438 2.125350 GCGGTGGCTGAAGAGGAG 60.125 66.667 0.00 0.00 35.83 3.69
438 439 2.798445 TAGGCGGTGGCTGAAGAGGA 62.798 60.000 2.81 0.00 39.30 3.71
439 440 2.303549 CTAGGCGGTGGCTGAAGAGG 62.304 65.000 2.81 0.00 39.30 3.69
440 441 1.142748 CTAGGCGGTGGCTGAAGAG 59.857 63.158 2.81 0.00 39.30 2.85
441 442 2.359169 CCTAGGCGGTGGCTGAAGA 61.359 63.158 0.00 0.00 39.30 2.87
442 443 2.187946 CCTAGGCGGTGGCTGAAG 59.812 66.667 0.00 0.00 39.30 3.02
443 444 2.606519 ACCTAGGCGGTGGCTGAA 60.607 61.111 9.30 0.00 46.80 3.02
455 456 8.336801 ACAAATTTTGCCTAGAAACTACCTAG 57.663 34.615 9.04 0.00 34.77 3.02
456 457 7.940137 TGACAAATTTTGCCTAGAAACTACCTA 59.060 33.333 9.04 0.00 0.00 3.08
457 458 6.775629 TGACAAATTTTGCCTAGAAACTACCT 59.224 34.615 9.04 0.00 0.00 3.08
458 459 6.977213 TGACAAATTTTGCCTAGAAACTACC 58.023 36.000 9.04 0.00 0.00 3.18
459 460 8.865590 TTTGACAAATTTTGCCTAGAAACTAC 57.134 30.769 9.04 0.00 0.00 2.73
460 461 9.474920 CATTTGACAAATTTTGCCTAGAAACTA 57.525 29.630 10.77 0.00 0.00 2.24
461 462 8.203485 TCATTTGACAAATTTTGCCTAGAAACT 58.797 29.630 10.77 0.00 0.00 2.66
462 463 8.364129 TCATTTGACAAATTTTGCCTAGAAAC 57.636 30.769 10.77 0.00 0.00 2.78
464 465 9.859427 CTATCATTTGACAAATTTTGCCTAGAA 57.141 29.630 10.77 0.00 0.00 2.10
465 466 9.023962 ACTATCATTTGACAAATTTTGCCTAGA 57.976 29.630 10.77 3.61 0.00 2.43
466 467 9.643693 AACTATCATTTGACAAATTTTGCCTAG 57.356 29.630 10.77 8.53 0.00 3.02
467 468 9.638239 GAACTATCATTTGACAAATTTTGCCTA 57.362 29.630 10.77 0.00 0.00 3.93
468 469 8.149647 TGAACTATCATTTGACAAATTTTGCCT 58.850 29.630 10.77 0.00 0.00 4.75
469 470 8.309163 TGAACTATCATTTGACAAATTTTGCC 57.691 30.769 10.77 0.00 0.00 4.52
470 471 8.981647 ACTGAACTATCATTTGACAAATTTTGC 58.018 29.630 10.77 3.32 34.37 3.68
472 473 9.480053 CCACTGAACTATCATTTGACAAATTTT 57.520 29.630 10.77 4.44 34.37 1.82
473 474 8.641541 ACCACTGAACTATCATTTGACAAATTT 58.358 29.630 10.77 2.84 34.37 1.82
474 475 8.181904 ACCACTGAACTATCATTTGACAAATT 57.818 30.769 10.77 0.76 34.37 1.82
475 476 7.765695 ACCACTGAACTATCATTTGACAAAT 57.234 32.000 7.62 7.62 34.37 2.32
476 477 7.717436 TGTACCACTGAACTATCATTTGACAAA 59.283 33.333 2.48 2.48 34.37 2.83
477 478 7.172532 GTGTACCACTGAACTATCATTTGACAA 59.827 37.037 0.00 0.00 34.37 3.18
478 479 6.649141 GTGTACCACTGAACTATCATTTGACA 59.351 38.462 0.00 0.00 34.37 3.58
479 480 6.649141 TGTGTACCACTGAACTATCATTTGAC 59.351 38.462 0.00 0.00 34.37 3.18
480 481 6.764379 TGTGTACCACTGAACTATCATTTGA 58.236 36.000 0.00 0.00 34.37 2.69
481 482 7.433708 TTGTGTACCACTGAACTATCATTTG 57.566 36.000 0.00 0.00 34.37 2.32
482 483 7.362056 GCATTGTGTACCACTGAACTATCATTT 60.362 37.037 6.07 0.00 34.37 2.32
483 484 6.094048 GCATTGTGTACCACTGAACTATCATT 59.906 38.462 6.07 0.00 34.37 2.57
484 485 5.586243 GCATTGTGTACCACTGAACTATCAT 59.414 40.000 6.07 0.00 34.37 2.45
485 486 4.935205 GCATTGTGTACCACTGAACTATCA 59.065 41.667 6.07 0.00 35.11 2.15
486 487 4.332819 GGCATTGTGTACCACTGAACTATC 59.667 45.833 6.07 0.00 35.11 2.08
487 488 4.019321 AGGCATTGTGTACCACTGAACTAT 60.019 41.667 6.07 0.00 35.11 2.12
488 489 3.326588 AGGCATTGTGTACCACTGAACTA 59.673 43.478 6.07 0.00 35.11 2.24
489 490 2.106511 AGGCATTGTGTACCACTGAACT 59.893 45.455 6.07 1.96 35.11 3.01
490 491 2.226437 CAGGCATTGTGTACCACTGAAC 59.774 50.000 6.07 0.00 35.11 3.18
491 492 2.105649 TCAGGCATTGTGTACCACTGAA 59.894 45.455 0.00 0.00 35.11 3.02
492 493 1.696884 TCAGGCATTGTGTACCACTGA 59.303 47.619 6.07 0.00 35.11 3.41
493 494 2.079158 CTCAGGCATTGTGTACCACTG 58.921 52.381 0.00 0.00 35.11 3.66
494 495 1.977854 TCTCAGGCATTGTGTACCACT 59.022 47.619 0.00 0.00 35.11 4.00
495 496 2.472695 TCTCAGGCATTGTGTACCAC 57.527 50.000 0.00 0.00 34.56 4.16
496 497 2.940971 GCATCTCAGGCATTGTGTACCA 60.941 50.000 0.00 0.00 0.00 3.25
497 498 1.672881 GCATCTCAGGCATTGTGTACC 59.327 52.381 0.00 0.00 0.00 3.34
498 499 1.328680 CGCATCTCAGGCATTGTGTAC 59.671 52.381 0.00 0.00 0.00 2.90
499 500 1.655484 CGCATCTCAGGCATTGTGTA 58.345 50.000 0.00 0.00 0.00 2.90
500 501 1.028330 CCGCATCTCAGGCATTGTGT 61.028 55.000 0.00 0.00 0.00 3.72
501 502 0.745486 TCCGCATCTCAGGCATTGTG 60.745 55.000 0.00 0.00 0.00 3.33
502 503 0.182061 ATCCGCATCTCAGGCATTGT 59.818 50.000 0.00 0.00 0.00 2.71
503 504 1.315690 AATCCGCATCTCAGGCATTG 58.684 50.000 0.00 0.00 0.00 2.82
504 505 1.679680 CAAATCCGCATCTCAGGCATT 59.320 47.619 0.00 0.00 0.00 3.56
505 506 1.315690 CAAATCCGCATCTCAGGCAT 58.684 50.000 0.00 0.00 0.00 4.40
506 507 0.035152 ACAAATCCGCATCTCAGGCA 60.035 50.000 0.00 0.00 0.00 4.75
507 508 0.659957 GACAAATCCGCATCTCAGGC 59.340 55.000 0.00 0.00 0.00 4.85
673 674 3.312973 CCTGTAGTAGACCAGTAGAAGCG 59.687 52.174 0.00 0.00 0.00 4.68
684 685 7.768807 ATCTGGTCAATATCCTGTAGTAGAC 57.231 40.000 0.00 0.00 0.00 2.59
685 686 9.877222 TTAATCTGGTCAATATCCTGTAGTAGA 57.123 33.333 0.00 0.00 0.00 2.59
715 722 0.666274 TTGTAGTCAGCGTTCGCCTG 60.666 55.000 13.54 10.97 0.00 4.85
734 741 4.037446 TGCAGAGCACTTTCGGTAATTTTT 59.963 37.500 0.00 0.00 31.71 1.94
735 742 3.568007 TGCAGAGCACTTTCGGTAATTTT 59.432 39.130 0.00 0.00 31.71 1.82
736 743 3.146066 TGCAGAGCACTTTCGGTAATTT 58.854 40.909 0.00 0.00 31.71 1.82
738 745 2.472695 TGCAGAGCACTTTCGGTAAT 57.527 45.000 0.00 0.00 31.71 1.89
739 746 3.999821 TGCAGAGCACTTTCGGTAA 57.000 47.368 0.00 0.00 31.71 2.85
750 757 0.441533 CAGTCAATCGTGTGCAGAGC 59.558 55.000 0.00 0.00 0.00 4.09
751 758 0.441533 GCAGTCAATCGTGTGCAGAG 59.558 55.000 0.00 0.00 35.91 3.35
752 759 0.033920 AGCAGTCAATCGTGTGCAGA 59.966 50.000 0.00 0.00 38.44 4.26
754 761 1.229975 CCAGCAGTCAATCGTGTGCA 61.230 55.000 0.00 0.00 38.44 4.57
755 762 0.950555 TCCAGCAGTCAATCGTGTGC 60.951 55.000 0.00 0.00 36.10 4.57
756 763 0.792640 GTCCAGCAGTCAATCGTGTG 59.207 55.000 0.00 0.00 0.00 3.82
757 764 0.667487 CGTCCAGCAGTCAATCGTGT 60.667 55.000 0.00 0.00 0.00 4.49
758 765 0.388520 TCGTCCAGCAGTCAATCGTG 60.389 55.000 0.00 0.00 0.00 4.35
759 766 0.532573 ATCGTCCAGCAGTCAATCGT 59.467 50.000 0.00 0.00 0.00 3.73
760 767 0.926155 CATCGTCCAGCAGTCAATCG 59.074 55.000 0.00 0.00 0.00 3.34
761 768 1.662629 CACATCGTCCAGCAGTCAATC 59.337 52.381 0.00 0.00 0.00 2.67
764 771 0.319813 CACACATCGTCCAGCAGTCA 60.320 55.000 0.00 0.00 0.00 3.41
765 772 1.630244 GCACACATCGTCCAGCAGTC 61.630 60.000 0.00 0.00 0.00 3.51
766 773 1.669115 GCACACATCGTCCAGCAGT 60.669 57.895 0.00 0.00 0.00 4.40
768 775 2.358615 GGCACACATCGTCCAGCA 60.359 61.111 0.00 0.00 0.00 4.41
769 776 3.127533 GGGCACACATCGTCCAGC 61.128 66.667 0.00 0.00 0.00 4.85
770 777 2.815211 CGGGCACACATCGTCCAG 60.815 66.667 0.00 0.00 0.00 3.86
773 780 3.179265 CGTCGGGCACACATCGTC 61.179 66.667 0.00 0.00 0.00 4.20
774 781 4.735132 CCGTCGGGCACACATCGT 62.735 66.667 2.34 0.00 0.00 3.73
776 783 4.077184 TCCCGTCGGGCACACATC 62.077 66.667 26.42 0.00 43.94 3.06
777 784 4.082523 CTCCCGTCGGGCACACAT 62.083 66.667 26.42 0.00 43.94 3.21
787 794 4.459089 GTGGCTCCTGCTCCCGTC 62.459 72.222 0.00 0.00 39.59 4.79
789 796 4.767255 GTGTGGCTCCTGCTCCCG 62.767 72.222 0.00 0.00 39.59 5.14
790 797 3.618780 CTGTGTGGCTCCTGCTCCC 62.619 68.421 0.00 0.00 39.59 4.30
792 799 0.035630 AATCTGTGTGGCTCCTGCTC 60.036 55.000 0.00 0.00 39.59 4.26
793 800 1.279496 TAATCTGTGTGGCTCCTGCT 58.721 50.000 0.00 0.00 39.59 4.24
794 801 2.113860 TTAATCTGTGTGGCTCCTGC 57.886 50.000 0.00 0.00 38.76 4.85
795 802 4.321230 GGTTTTTAATCTGTGTGGCTCCTG 60.321 45.833 0.00 0.00 0.00 3.86
796 803 3.826729 GGTTTTTAATCTGTGTGGCTCCT 59.173 43.478 0.00 0.00 0.00 3.69
797 804 3.056821 GGGTTTTTAATCTGTGTGGCTCC 60.057 47.826 0.00 0.00 0.00 4.70
798 805 3.056821 GGGGTTTTTAATCTGTGTGGCTC 60.057 47.826 0.00 0.00 0.00 4.70
799 806 2.897326 GGGGTTTTTAATCTGTGTGGCT 59.103 45.455 0.00 0.00 0.00 4.75
800 807 2.630580 TGGGGTTTTTAATCTGTGTGGC 59.369 45.455 0.00 0.00 0.00 5.01
801 808 3.306019 GCTGGGGTTTTTAATCTGTGTGG 60.306 47.826 0.00 0.00 0.00 4.17
802 809 3.573967 AGCTGGGGTTTTTAATCTGTGTG 59.426 43.478 0.00 0.00 0.00 3.82
803 810 3.844640 AGCTGGGGTTTTTAATCTGTGT 58.155 40.909 0.00 0.00 0.00 3.72
804 811 5.975693 TTAGCTGGGGTTTTTAATCTGTG 57.024 39.130 0.00 0.00 0.00 3.66
805 812 5.656859 GGATTAGCTGGGGTTTTTAATCTGT 59.343 40.000 0.00 0.00 33.42 3.41
806 813 5.893824 AGGATTAGCTGGGGTTTTTAATCTG 59.106 40.000 0.00 0.00 33.42 2.90
807 814 6.092346 AGGATTAGCTGGGGTTTTTAATCT 57.908 37.500 0.00 0.00 33.42 2.40
808 815 6.017357 CGTAGGATTAGCTGGGGTTTTTAATC 60.017 42.308 0.00 0.00 32.57 1.75
809 816 5.826208 CGTAGGATTAGCTGGGGTTTTTAAT 59.174 40.000 0.00 0.00 0.00 1.40
810 817 5.187687 CGTAGGATTAGCTGGGGTTTTTAA 58.812 41.667 0.00 0.00 0.00 1.52
811 818 4.773013 CGTAGGATTAGCTGGGGTTTTTA 58.227 43.478 0.00 0.00 0.00 1.52
812 819 3.617284 CGTAGGATTAGCTGGGGTTTTT 58.383 45.455 0.00 0.00 0.00 1.94
813 820 3.277142 CGTAGGATTAGCTGGGGTTTT 57.723 47.619 0.00 0.00 0.00 2.43
835 842 0.888619 CAGGCGACAAGTCAGGTAGA 59.111 55.000 0.00 0.00 0.00 2.59
836 843 0.603569 ACAGGCGACAAGTCAGGTAG 59.396 55.000 0.00 0.00 0.00 3.18
837 844 0.317160 CACAGGCGACAAGTCAGGTA 59.683 55.000 0.00 0.00 0.00 3.08
838 845 1.069765 CACAGGCGACAAGTCAGGT 59.930 57.895 0.00 0.00 0.00 4.00
839 846 1.669115 CCACAGGCGACAAGTCAGG 60.669 63.158 0.00 0.00 0.00 3.86
840 847 1.669115 CCCACAGGCGACAAGTCAG 60.669 63.158 0.00 0.00 0.00 3.51
841 848 2.377628 GACCCACAGGCGACAAGTCA 62.378 60.000 0.00 0.00 36.11 3.41
842 849 1.668151 GACCCACAGGCGACAAGTC 60.668 63.158 0.00 0.00 36.11 3.01
843 850 2.426023 GACCCACAGGCGACAAGT 59.574 61.111 0.00 0.00 36.11 3.16
844 851 2.738521 CGACCCACAGGCGACAAG 60.739 66.667 0.00 0.00 35.49 3.16
845 852 3.542676 ACGACCCACAGGCGACAA 61.543 61.111 0.00 0.00 36.54 3.18
846 853 4.293648 CACGACCCACAGGCGACA 62.294 66.667 0.00 0.00 36.54 4.35
852 859 3.589654 ATGGACGCACGACCCACAG 62.590 63.158 8.97 0.00 32.07 3.66
853 860 3.583276 GATGGACGCACGACCCACA 62.583 63.158 8.97 0.00 32.07 4.17
854 861 2.813908 GATGGACGCACGACCCAC 60.814 66.667 8.97 0.13 32.07 4.61
855 862 4.077184 GGATGGACGCACGACCCA 62.077 66.667 8.97 9.68 0.00 4.51
857 864 4.430765 ACGGATGGACGCACGACC 62.431 66.667 4.58 4.58 37.37 4.79
858 865 2.879462 GACGGATGGACGCACGAC 60.879 66.667 0.00 0.00 37.37 4.34
859 866 4.470170 CGACGGATGGACGCACGA 62.470 66.667 0.00 0.00 38.49 4.35
860 867 4.771356 ACGACGGATGGACGCACG 62.771 66.667 0.00 0.00 40.62 5.34
861 868 3.179265 CACGACGGATGGACGCAC 61.179 66.667 0.00 0.00 37.37 5.34
862 869 3.676605 ACACGACGGATGGACGCA 61.677 61.111 0.00 0.00 37.37 5.24
863 870 2.531927 TACACACGACGGATGGACGC 62.532 60.000 0.00 0.00 37.37 5.19
864 871 0.099968 ATACACACGACGGATGGACG 59.900 55.000 0.00 0.00 40.31 4.79
865 872 2.857489 GCTATACACACGACGGATGGAC 60.857 54.545 0.00 0.00 0.00 4.02
866 873 1.335810 GCTATACACACGACGGATGGA 59.664 52.381 0.00 0.00 0.00 3.41
867 874 1.066454 TGCTATACACACGACGGATGG 59.934 52.381 0.00 0.00 0.00 3.51
868 875 2.223502 ACTGCTATACACACGACGGATG 60.224 50.000 0.00 0.00 0.00 3.51
869 876 2.022195 ACTGCTATACACACGACGGAT 58.978 47.619 0.00 0.00 0.00 4.18
870 877 1.131693 CACTGCTATACACACGACGGA 59.868 52.381 0.00 0.00 0.00 4.69
871 878 1.545759 CACTGCTATACACACGACGG 58.454 55.000 0.00 0.00 0.00 4.79
872 879 0.914551 GCACTGCTATACACACGACG 59.085 55.000 0.00 0.00 0.00 5.12
873 880 2.186076 GAGCACTGCTATACACACGAC 58.814 52.381 2.71 0.00 39.88 4.34
874 881 1.816224 TGAGCACTGCTATACACACGA 59.184 47.619 2.71 0.00 39.88 4.35
875 882 2.278026 TGAGCACTGCTATACACACG 57.722 50.000 2.71 0.00 39.88 4.49
876 883 5.356882 TTTTTGAGCACTGCTATACACAC 57.643 39.130 2.71 0.00 39.88 3.82
877 884 6.573664 AATTTTTGAGCACTGCTATACACA 57.426 33.333 2.71 0.00 39.88 3.72
878 885 7.693951 CAGTAATTTTTGAGCACTGCTATACAC 59.306 37.037 2.71 0.00 39.88 2.90
879 886 7.751732 CAGTAATTTTTGAGCACTGCTATACA 58.248 34.615 2.71 0.00 39.88 2.29
886 893 4.217118 AGGAGCAGTAATTTTTGAGCACTG 59.783 41.667 0.00 0.00 39.65 3.66
887 894 4.217118 CAGGAGCAGTAATTTTTGAGCACT 59.783 41.667 0.00 0.00 0.00 4.40
888 895 4.479619 CAGGAGCAGTAATTTTTGAGCAC 58.520 43.478 0.00 0.00 0.00 4.40
889 896 3.057315 GCAGGAGCAGTAATTTTTGAGCA 60.057 43.478 0.00 0.00 41.58 4.26
890 897 3.192212 AGCAGGAGCAGTAATTTTTGAGC 59.808 43.478 0.00 0.00 45.49 4.26
891 898 4.380233 CCAGCAGGAGCAGTAATTTTTGAG 60.380 45.833 0.00 0.00 45.49 3.02
892 899 3.507233 CCAGCAGGAGCAGTAATTTTTGA 59.493 43.478 0.00 0.00 45.49 2.69
893 900 3.256631 ACCAGCAGGAGCAGTAATTTTTG 59.743 43.478 0.35 0.00 45.49 2.44
947 954 0.389687 ACGCAGCAGAGCTTCTCTTC 60.390 55.000 0.00 0.00 38.99 2.87
988 997 2.537560 CGGCCATGGCTCGATTGAC 61.538 63.158 34.70 15.39 41.60 3.18
1005 1020 0.749818 TGGAGAGTGGAGCTAGCTCG 60.750 60.000 32.78 0.00 43.59 5.03
1017 1032 1.558756 CCAAGGAAGAGCATGGAGAGT 59.441 52.381 0.00 0.00 34.82 3.24
1037 1052 3.112709 GGACGACGACAAGCAGGC 61.113 66.667 0.00 0.00 0.00 4.85
1417 1435 1.671901 GAGGTGAAGAGCTCGAGGGG 61.672 65.000 15.58 0.00 36.99 4.79
1919 1958 4.036852 CCTGCATTGTAGTACGAGATGAGA 59.963 45.833 12.60 1.70 0.00 3.27
1939 1996 4.568152 ACGGTGTTGAAAAATTCTCCTG 57.432 40.909 0.00 0.00 0.00 3.86
1947 2004 2.994716 CGACGTACGGTGTTGAAAAA 57.005 45.000 21.06 0.00 38.46 1.94
1975 2051 1.691976 TCCGAGTTGAAGCAGAGGAAA 59.308 47.619 0.00 0.00 0.00 3.13
2350 2440 4.083862 GCCGCCCTCGAACCTCTT 62.084 66.667 0.00 0.00 38.10 2.85
2626 2725 6.394536 GAAAGAATTTTCGCTTGGCGCTTG 62.395 45.833 7.64 0.00 45.87 4.01
2628 2727 2.922335 GAAAGAATTTTCGCTTGGCGCT 60.922 45.455 7.64 0.00 45.87 5.92
2651 2750 1.202818 CCCTACCCTAAGGCTTCATGC 60.203 57.143 1.30 0.00 41.94 4.06
2655 2754 1.446366 CGCCCTACCCTAAGGCTTC 59.554 63.158 1.30 0.00 44.84 3.86
2669 2768 0.109319 ATGTTGTGAATTTCGCGCCC 60.109 50.000 0.00 0.00 0.00 6.13
2670 2769 0.984109 CATGTTGTGAATTTCGCGCC 59.016 50.000 0.00 0.00 0.00 6.53
2671 2770 0.984109 CCATGTTGTGAATTTCGCGC 59.016 50.000 0.00 0.00 0.00 6.86
2672 2771 1.198867 TCCCATGTTGTGAATTTCGCG 59.801 47.619 0.00 0.00 0.00 5.87
2681 2780 5.587388 AGCAATAAATCTCCCATGTTGTG 57.413 39.130 0.00 0.00 0.00 3.33
2809 2934 3.695830 TGGAGTGGAATAGGTGTTGTC 57.304 47.619 0.00 0.00 0.00 3.18
2825 2950 6.017934 CGTACTTGGAATGTAATGGAATGGAG 60.018 42.308 0.00 0.00 0.00 3.86
2833 2958 7.770801 TCTGATTCGTACTTGGAATGTAATG 57.229 36.000 0.00 0.00 34.41 1.90
2835 2960 6.257849 GCATCTGATTCGTACTTGGAATGTAA 59.742 38.462 0.00 0.00 34.41 2.41
2836 2961 5.753438 GCATCTGATTCGTACTTGGAATGTA 59.247 40.000 0.00 0.00 34.41 2.29
2837 2962 4.572389 GCATCTGATTCGTACTTGGAATGT 59.428 41.667 0.00 0.00 34.41 2.71
2838 2963 4.813161 AGCATCTGATTCGTACTTGGAATG 59.187 41.667 0.00 0.00 34.41 2.67
2839 2964 5.028549 AGCATCTGATTCGTACTTGGAAT 57.971 39.130 0.00 0.00 36.85 3.01
2840 2965 4.081697 TGAGCATCTGATTCGTACTTGGAA 60.082 41.667 0.00 0.00 34.92 3.53
2841 2966 3.447229 TGAGCATCTGATTCGTACTTGGA 59.553 43.478 0.00 0.00 34.92 3.53
2842 2967 3.785486 TGAGCATCTGATTCGTACTTGG 58.215 45.455 0.00 0.00 34.92 3.61
2843 2968 4.676546 TCTGAGCATCTGATTCGTACTTG 58.323 43.478 0.00 0.00 38.20 3.16
2844 2969 4.736168 GCTCTGAGCATCTGATTCGTACTT 60.736 45.833 24.02 0.00 42.34 2.24
2845 2970 3.243367 GCTCTGAGCATCTGATTCGTACT 60.243 47.826 24.02 0.00 42.34 2.73
2846 2971 3.049206 GCTCTGAGCATCTGATTCGTAC 58.951 50.000 24.02 0.00 42.34 3.67
2847 2972 2.954989 AGCTCTGAGCATCTGATTCGTA 59.045 45.455 29.49 0.00 45.56 3.43
2848 2973 1.755959 AGCTCTGAGCATCTGATTCGT 59.244 47.619 29.49 3.72 45.56 3.85
2849 2974 2.512485 AGCTCTGAGCATCTGATTCG 57.488 50.000 29.49 0.00 45.56 3.34
2850 2975 4.589216 AGTAGCTCTGAGCATCTGATTC 57.411 45.455 29.49 7.52 45.56 2.52
2851 2976 4.892345 TGTAGTAGCTCTGAGCATCTGATT 59.108 41.667 29.49 11.06 45.56 2.57
2859 2984 4.392921 TTTCCATGTAGTAGCTCTGAGC 57.607 45.455 21.72 21.72 42.84 4.26
2885 3010 9.439500 CCATGGAATGTTCTGAATAAATTTGTT 57.561 29.630 5.56 0.00 44.81 2.83
2886 3011 7.550196 GCCATGGAATGTTCTGAATAAATTTGT 59.450 33.333 18.40 0.00 44.81 2.83
2887 3012 7.254185 CGCCATGGAATGTTCTGAATAAATTTG 60.254 37.037 18.40 0.00 44.81 2.32
2963 3089 7.924412 GTCCACTGGTATTTCAAGATCGTATTA 59.076 37.037 0.00 0.00 0.00 0.98
2964 3090 6.761714 GTCCACTGGTATTTCAAGATCGTATT 59.238 38.462 0.00 0.00 0.00 1.89
2968 3094 3.551890 CGTCCACTGGTATTTCAAGATCG 59.448 47.826 0.00 0.00 0.00 3.69
3022 3148 7.725818 ATCAAGAGTGCATAGTTGTATCATG 57.274 36.000 0.00 0.00 0.00 3.07
3032 3158 4.744137 CGGAAGAGAATCAAGAGTGCATAG 59.256 45.833 0.00 0.00 37.82 2.23
3176 3302 0.777446 TCCCAGGGTTCTTCAAAGGG 59.223 55.000 5.01 0.00 36.15 3.95
3340 3466 3.754965 ACCGCCACTGCAATTATATGAT 58.245 40.909 0.00 0.00 37.32 2.45
3372 3498 4.635765 TGCTTGTTAGTGCTGCCTATAAAG 59.364 41.667 0.00 6.59 0.00 1.85
3373 3499 4.584874 TGCTTGTTAGTGCTGCCTATAAA 58.415 39.130 0.00 0.00 0.00 1.40
3374 3500 4.081142 TCTGCTTGTTAGTGCTGCCTATAA 60.081 41.667 0.00 0.00 0.00 0.98
3375 3501 3.450817 TCTGCTTGTTAGTGCTGCCTATA 59.549 43.478 0.00 0.00 0.00 1.31
3376 3502 2.237143 TCTGCTTGTTAGTGCTGCCTAT 59.763 45.455 0.00 0.00 0.00 2.57
3377 3503 1.623311 TCTGCTTGTTAGTGCTGCCTA 59.377 47.619 0.00 0.00 0.00 3.93
3378 3504 0.397941 TCTGCTTGTTAGTGCTGCCT 59.602 50.000 0.00 0.00 0.00 4.75
3392 3518 1.419387 ACTTCTCCACTTGCTTCTGCT 59.581 47.619 0.00 0.00 40.48 4.24
3396 3522 2.037772 TCTGGACTTCTCCACTTGCTTC 59.962 50.000 0.00 0.00 42.15 3.86
3407 3533 4.564406 CCAGCACTTGTTATCTGGACTTCT 60.564 45.833 1.09 0.00 46.80 2.85
3408 3534 3.686726 CCAGCACTTGTTATCTGGACTTC 59.313 47.826 1.09 0.00 46.80 3.01
3410 3536 2.616510 GCCAGCACTTGTTATCTGGACT 60.617 50.000 10.95 0.00 46.80 3.85
3437 3563 7.189087 ACCCATTAATCAGGTATGGAAACTTT 58.811 34.615 5.09 0.00 41.05 2.66
3509 3635 0.718343 CTCTTTCTGCTTTCTCGGCG 59.282 55.000 0.00 0.00 0.00 6.46
3560 3686 0.863144 TGAGGCAGACGCGTAAAAAC 59.137 50.000 13.97 0.00 39.92 2.43
3564 3690 0.530744 ATTCTGAGGCAGACGCGTAA 59.469 50.000 13.97 0.00 40.46 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.