Multiple sequence alignment - TraesCS1A01G244700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G244700 chr1A 100.000 7917 0 0 1 7917 432764471 432772387 0.000000e+00 14621.0
1 TraesCS1A01G244700 chr1A 97.541 366 9 0 7225 7590 432776866 432777231 1.880000e-175 627.0
2 TraesCS1A01G244700 chr1A 94.536 366 20 0 7225 7590 467132842 467133207 4.150000e-157 566.0
3 TraesCS1A01G244700 chr1A 94.277 332 18 1 7586 7917 432777389 432777719 2.550000e-139 507.0
4 TraesCS1A01G244700 chr1A 94.294 333 15 3 7586 7917 467133365 467133694 2.550000e-139 507.0
5 TraesCS1A01G244700 chr1A 76.364 220 40 9 1 212 536351896 536351681 3.020000e-19 108.0
6 TraesCS1A01G244700 chr1A 84.348 115 13 4 2448 2562 582699842 582699951 3.020000e-19 108.0
7 TraesCS1A01G244700 chr1A 77.477 111 24 1 2444 2554 397450862 397450971 1.840000e-06 65.8
8 TraesCS1A01G244700 chr1B 96.054 4334 130 15 2786 7104 451073209 451077516 0.000000e+00 7018.0
9 TraesCS1A01G244700 chr1B 94.132 2079 72 12 704 2772 451071187 451073225 0.000000e+00 3118.0
10 TraesCS1A01G244700 chr1B 79.730 148 20 8 124 264 451068980 451069124 1.820000e-16 99.0
11 TraesCS1A01G244700 chr1B 97.917 48 1 0 7177 7224 451086066 451086113 5.090000e-12 84.2
12 TraesCS1A01G244700 chr1D 92.969 4395 195 40 696 5047 335266563 335270886 0.000000e+00 6300.0
13 TraesCS1A01G244700 chr1D 97.348 2225 49 4 5005 7224 335270887 335273106 0.000000e+00 3773.0
14 TraesCS1A01G244700 chr1D 86.735 98 13 0 2447 2544 467387529 467387432 8.400000e-20 110.0
15 TraesCS1A01G244700 chr1D 80.153 131 21 4 2444 2574 316402931 316403056 8.460000e-15 93.5
16 TraesCS1A01G244700 chr5A 96.448 366 12 1 7225 7590 602156654 602156290 3.160000e-168 603.0
17 TraesCS1A01G244700 chr5A 95.355 366 17 0 7225 7590 403910040 403910405 4.120000e-162 582.0
18 TraesCS1A01G244700 chr5A 95.355 366 17 0 7225 7590 403915967 403916332 4.120000e-162 582.0
19 TraesCS1A01G244700 chr5A 93.373 332 18 3 7586 7917 602161443 602161116 9.230000e-134 488.0
20 TraesCS1A01G244700 chr5A 93.333 330 19 2 7586 7915 602156132 602155806 1.190000e-132 484.0
21 TraesCS1A01G244700 chr4A 96.175 366 13 1 7225 7590 479384762 479385126 1.470000e-166 597.0
22 TraesCS1A01G244700 chr4A 94.837 368 19 0 7225 7592 479390083 479390450 6.890000e-160 575.0
23 TraesCS1A01G244700 chr4A 92.515 334 19 5 7586 7917 479390609 479390938 2.590000e-129 473.0
24 TraesCS1A01G244700 chr4A 87.611 113 12 2 2451 2563 731087698 731087588 6.450000e-26 130.0
25 TraesCS1A01G244700 chr4A 86.957 115 14 1 2448 2562 610327839 610327726 2.320000e-25 128.0
26 TraesCS1A01G244700 chr4A 86.726 113 14 1 2448 2560 655654413 655654302 3.000000e-24 124.0
27 TraesCS1A01G244700 chr6D 91.916 334 22 4 7586 7917 406114034 406113704 5.600000e-126 462.0
28 TraesCS1A01G244700 chr3A 91.916 334 21 5 7586 7917 356274060 356274389 5.600000e-126 462.0
29 TraesCS1A01G244700 chr3A 87.654 81 7 3 1 81 730111793 730111716 3.040000e-14 91.6
30 TraesCS1A01G244700 chr3A 85.185 81 11 1 1 81 730111423 730111344 1.830000e-11 82.4
31 TraesCS1A01G244700 chr7B 91.592 333 24 3 7586 7917 602435112 602435441 2.600000e-124 457.0
32 TraesCS1A01G244700 chr7B 86.555 119 13 2 2451 2569 750214216 750214101 2.320000e-25 128.0
33 TraesCS1A01G244700 chr7A 91.617 334 22 6 7586 7917 105276910 105276581 2.600000e-124 457.0
34 TraesCS1A01G244700 chr7D 88.798 366 41 0 7225 7590 631698885 631699250 4.360000e-122 449.0
35 TraesCS1A01G244700 chr7D 75.362 276 47 13 1 261 141559207 141558938 6.490000e-21 113.0
36 TraesCS1A01G244700 chrUn 87.738 367 45 0 7225 7591 102430567 102430933 5.680000e-116 429.0
37 TraesCS1A01G244700 chr2D 87.931 116 11 3 2448 2563 309068190 309068302 4.980000e-27 134.0
38 TraesCS1A01G244700 chr2D 74.713 261 47 16 14 264 358659692 358659943 1.820000e-16 99.0
39 TraesCS1A01G244700 chr6B 86.957 115 12 3 2448 2562 11555801 11555912 8.340000e-25 126.0
40 TraesCS1A01G244700 chr6B 86.607 112 13 2 2451 2562 5726641 5726532 1.080000e-23 122.0
41 TraesCS1A01G244700 chr6B 85.455 110 15 1 2443 2552 38016452 38016560 6.490000e-21 113.0
42 TraesCS1A01G244700 chr6B 94.444 54 3 0 1 54 707795951 707795898 5.090000e-12 84.2
43 TraesCS1A01G244700 chr3D 86.842 114 12 3 2448 2561 565988540 565988430 3.000000e-24 124.0
44 TraesCS1A01G244700 chr3D 84.314 102 16 0 2443 2544 110222719 110222618 5.060000e-17 100.0
45 TraesCS1A01G244700 chr2B 85.714 119 14 3 2448 2566 103925649 103925534 1.080000e-23 122.0
46 TraesCS1A01G244700 chr2B 82.308 130 19 4 1 128 106770385 106770512 8.400000e-20 110.0
47 TraesCS1A01G244700 chr4B 85.185 108 15 1 2448 2555 554955516 554955622 8.400000e-20 110.0
48 TraesCS1A01G244700 chr5D 92.308 52 4 0 5 56 6978862 6978913 3.060000e-09 75.0
49 TraesCS1A01G244700 chr5D 100.000 28 0 0 2447 2474 441118113 441118086 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G244700 chr1A 432764471 432772387 7916 False 14621.000000 14621 100.0000 1 7917 1 chr1A.!!$F2 7916
1 TraesCS1A01G244700 chr1A 432776866 432777719 853 False 567.000000 627 95.9090 7225 7917 2 chr1A.!!$F4 692
2 TraesCS1A01G244700 chr1A 467132842 467133694 852 False 536.500000 566 94.4150 7225 7917 2 chr1A.!!$F5 692
3 TraesCS1A01G244700 chr1B 451068980 451077516 8536 False 3411.666667 7018 89.9720 124 7104 3 chr1B.!!$F2 6980
4 TraesCS1A01G244700 chr1D 335266563 335273106 6543 False 5036.500000 6300 95.1585 696 7224 2 chr1D.!!$F2 6528
5 TraesCS1A01G244700 chr5A 602155806 602156654 848 True 543.500000 603 94.8905 7225 7915 2 chr5A.!!$R2 690
6 TraesCS1A01G244700 chr4A 479390083 479390938 855 False 524.000000 575 93.6760 7225 7917 2 chr4A.!!$F2 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 174 0.031585 GCACAGACCTGTACGTCACA 59.968 55.000 1.95 0.0 42.83 3.58 F
617 2282 0.033504 TCAGTGCCTTCGAGGACAAC 59.966 55.000 0.00 0.0 37.67 3.32 F
623 2288 0.666577 CCTTCGAGGACAACGGTGAC 60.667 60.000 7.88 0.0 37.67 3.67 F
955 2654 0.769873 ATCATCAGCATCCCACCTCC 59.230 55.000 0.00 0.0 0.00 4.30 F
2095 3795 1.003349 CATCCTCCTGATCATCCTGGC 59.997 57.143 0.00 0.0 0.00 4.85 F
3127 4869 0.038526 CGACGTGCTTGGTACTTCCT 60.039 55.000 0.00 0.0 37.07 3.36 F
3823 5581 0.036306 CACCTTACTCTGGCGGGTTT 59.964 55.000 0.00 0.0 0.00 3.27 F
4634 6392 0.107643 GTGGATTAGCAGAGAGGCCC 59.892 60.000 0.00 0.0 0.00 5.80 F
6190 7994 1.412710 TCAGTATGGGATCTTGACGGC 59.587 52.381 0.00 0.0 36.16 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 2926 0.105039 GGATCAGAACTACGGCTGGG 59.895 60.000 0.00 0.00 33.05 4.45 R
1567 3267 0.183492 GGGGTCATGCTGCATTCCTA 59.817 55.000 23.59 6.60 0.00 2.94 R
1575 3275 0.615331 ACTACACTGGGGTCATGCTG 59.385 55.000 0.00 0.00 0.00 4.41 R
2764 4506 0.825840 TTTTTGCGGGGGAAGGACAG 60.826 55.000 0.00 0.00 0.00 3.51 R
3824 5582 0.036388 CGCCAGAGTCAGCCCTAAAA 60.036 55.000 0.00 0.00 0.00 1.52 R
4523 6281 0.901827 TTAGTCGAAGCAGGCCATCA 59.098 50.000 5.01 0.00 0.00 3.07 R
5034 6792 7.448748 ACCTGTACCAAATGATTTGTTACTC 57.551 36.000 21.00 7.59 38.75 2.59 R
6511 8315 1.000506 GTTGAGACCGAGGTTGTGCTA 59.999 52.381 0.00 0.00 0.00 3.49 R
7712 9689 0.912486 ATAAGAGGCGGCTGGACTTT 59.088 50.000 19.63 5.40 29.96 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.920376 CAACTATAATCAAAGTTGGCCGG 58.080 43.478 0.00 0.00 45.68 6.13
39 40 2.949644 ACTATAATCAAAGTTGGCCGGC 59.050 45.455 21.18 21.18 0.00 6.13
40 41 1.111277 ATAATCAAAGTTGGCCGGCC 58.889 50.000 39.40 39.40 0.00 6.13
41 42 0.968393 TAATCAAAGTTGGCCGGCCC 60.968 55.000 41.75 27.67 34.56 5.80
42 43 3.521765 ATCAAAGTTGGCCGGCCCA 62.522 57.895 41.75 30.62 43.51 5.36
43 44 2.803593 ATCAAAGTTGGCCGGCCCAT 62.804 55.000 41.75 25.00 44.89 4.00
44 45 2.203773 AAAGTTGGCCGGCCCATT 60.204 55.556 41.75 29.04 44.89 3.16
45 46 1.841103 AAAGTTGGCCGGCCCATTT 60.841 52.632 41.75 32.45 44.89 2.32
46 47 2.110757 AAAGTTGGCCGGCCCATTTG 62.111 55.000 41.75 0.00 44.89 2.32
47 48 2.994417 GTTGGCCGGCCCATTTGA 60.994 61.111 41.75 20.80 44.89 2.69
48 49 2.994417 TTGGCCGGCCCATTTGAC 60.994 61.111 41.75 15.81 44.89 3.18
52 53 3.140141 CCGGCCCATTTGACGCAT 61.140 61.111 0.00 0.00 0.00 4.73
53 54 2.102749 CGGCCCATTTGACGCATG 59.897 61.111 0.00 0.00 0.00 4.06
54 55 2.202783 GGCCCATTTGACGCATGC 60.203 61.111 7.91 7.91 0.00 4.06
55 56 2.572812 GCCCATTTGACGCATGCA 59.427 55.556 19.57 0.00 0.00 3.96
56 57 1.806758 GCCCATTTGACGCATGCAC 60.807 57.895 19.57 11.58 0.00 4.57
57 58 1.585517 CCCATTTGACGCATGCACA 59.414 52.632 19.57 14.20 0.00 4.57
58 59 0.733566 CCCATTTGACGCATGCACAC 60.734 55.000 19.57 8.58 0.00 3.82
59 60 0.039346 CCATTTGACGCATGCACACA 60.039 50.000 19.57 11.20 0.00 3.72
60 61 1.403116 CCATTTGACGCATGCACACAT 60.403 47.619 19.57 12.37 36.79 3.21
61 62 2.330286 CATTTGACGCATGCACACATT 58.670 42.857 19.57 2.79 32.87 2.71
62 63 2.505628 TTTGACGCATGCACACATTT 57.494 40.000 19.57 0.00 32.87 2.32
63 64 2.505628 TTGACGCATGCACACATTTT 57.494 40.000 19.57 0.00 32.87 1.82
64 65 2.505628 TGACGCATGCACACATTTTT 57.494 40.000 19.57 0.00 32.87 1.94
117 118 8.815565 TGTATGCTTTATTTTTCCTATGACCA 57.184 30.769 0.00 0.00 0.00 4.02
118 119 9.249053 TGTATGCTTTATTTTTCCTATGACCAA 57.751 29.630 0.00 0.00 0.00 3.67
119 120 9.516314 GTATGCTTTATTTTTCCTATGACCAAC 57.484 33.333 0.00 0.00 0.00 3.77
120 121 6.930731 TGCTTTATTTTTCCTATGACCAACC 58.069 36.000 0.00 0.00 0.00 3.77
121 122 6.495181 TGCTTTATTTTTCCTATGACCAACCA 59.505 34.615 0.00 0.00 0.00 3.67
122 123 7.015682 TGCTTTATTTTTCCTATGACCAACCAA 59.984 33.333 0.00 0.00 0.00 3.67
129 130 8.893563 TTTTCCTATGACCAACCAATTATTCT 57.106 30.769 0.00 0.00 0.00 2.40
132 133 6.159575 TCCTATGACCAACCAATTATTCTGGA 59.840 38.462 4.76 0.00 37.40 3.86
133 134 7.006509 CCTATGACCAACCAATTATTCTGGAT 58.993 38.462 4.76 0.00 37.40 3.41
136 137 8.837099 ATGACCAACCAATTATTCTGGATTTA 57.163 30.769 4.76 0.00 37.40 1.40
137 138 8.292444 TGACCAACCAATTATTCTGGATTTAG 57.708 34.615 4.76 0.00 37.40 1.85
145 146 9.683069 CCAATTATTCTGGATTTAGCATGTTAC 57.317 33.333 0.00 0.00 35.85 2.50
151 152 5.880332 TCTGGATTTAGCATGTTACCAGAAC 59.120 40.000 18.96 0.00 45.76 3.01
152 153 5.565509 TGGATTTAGCATGTTACCAGAACA 58.434 37.500 0.00 0.00 34.31 3.18
153 154 5.647658 TGGATTTAGCATGTTACCAGAACAG 59.352 40.000 0.00 0.00 33.18 3.16
156 158 2.154462 AGCATGTTACCAGAACAGCAC 58.846 47.619 0.00 0.00 33.18 4.40
161 163 2.143925 GTTACCAGAACAGCACAGACC 58.856 52.381 0.00 0.00 0.00 3.85
171 173 0.314302 AGCACAGACCTGTACGTCAC 59.686 55.000 1.95 0.00 42.83 3.67
172 174 0.031585 GCACAGACCTGTACGTCACA 59.968 55.000 1.95 0.00 42.83 3.58
189 191 0.039437 ACAGTGAGTTGGTAGCGTCG 60.039 55.000 0.00 0.00 0.00 5.12
193 195 1.080025 GAGTTGGTAGCGTCGCCTT 60.080 57.895 14.86 0.00 0.00 4.35
196 198 0.739813 GTTGGTAGCGTCGCCTTCAT 60.740 55.000 14.86 0.00 0.00 2.57
198 200 0.459585 TGGTAGCGTCGCCTTCATTC 60.460 55.000 14.86 0.00 0.00 2.67
200 202 0.459585 GTAGCGTCGCCTTCATTCCA 60.460 55.000 14.86 0.00 0.00 3.53
201 203 0.248012 TAGCGTCGCCTTCATTCCAA 59.752 50.000 14.86 0.00 0.00 3.53
203 205 0.451783 GCGTCGCCTTCATTCCAATT 59.548 50.000 5.75 0.00 0.00 2.32
207 209 4.095610 CGTCGCCTTCATTCCAATTAAAC 58.904 43.478 0.00 0.00 0.00 2.01
208 210 4.421058 GTCGCCTTCATTCCAATTAAACC 58.579 43.478 0.00 0.00 0.00 3.27
209 211 3.445805 TCGCCTTCATTCCAATTAAACCC 59.554 43.478 0.00 0.00 0.00 4.11
211 213 3.118408 GCCTTCATTCCAATTAAACCCCC 60.118 47.826 0.00 0.00 0.00 5.40
212 214 4.361783 CCTTCATTCCAATTAAACCCCCT 58.638 43.478 0.00 0.00 0.00 4.79
213 215 4.782691 CCTTCATTCCAATTAAACCCCCTT 59.217 41.667 0.00 0.00 0.00 3.95
215 217 5.017093 TCATTCCAATTAAACCCCCTTCA 57.983 39.130 0.00 0.00 0.00 3.02
218 220 1.822371 CCAATTAAACCCCCTTCACCG 59.178 52.381 0.00 0.00 0.00 4.94
219 221 2.555670 CCAATTAAACCCCCTTCACCGA 60.556 50.000 0.00 0.00 0.00 4.69
220 222 3.361786 CAATTAAACCCCCTTCACCGAT 58.638 45.455 0.00 0.00 0.00 4.18
221 223 3.750501 ATTAAACCCCCTTCACCGATT 57.249 42.857 0.00 0.00 0.00 3.34
225 227 1.919240 ACCCCCTTCACCGATTTTTC 58.081 50.000 0.00 0.00 0.00 2.29
226 228 0.808755 CCCCCTTCACCGATTTTTCG 59.191 55.000 0.00 0.00 0.00 3.46
228 230 1.199097 CCCCTTCACCGATTTTTCGTG 59.801 52.381 0.00 0.00 0.00 4.35
229 231 1.877443 CCCTTCACCGATTTTTCGTGT 59.123 47.619 0.00 0.00 0.00 4.49
230 232 2.095919 CCCTTCACCGATTTTTCGTGTC 60.096 50.000 0.00 0.00 0.00 3.67
231 233 2.806244 CCTTCACCGATTTTTCGTGTCT 59.194 45.455 0.00 0.00 0.00 3.41
232 234 3.120649 CCTTCACCGATTTTTCGTGTCTC 60.121 47.826 0.00 0.00 0.00 3.36
274 279 4.563140 TTTTAGCCCACCGATCTTTACT 57.437 40.909 0.00 0.00 0.00 2.24
275 280 5.680594 TTTTAGCCCACCGATCTTTACTA 57.319 39.130 0.00 0.00 0.00 1.82
276 281 5.881923 TTTAGCCCACCGATCTTTACTAT 57.118 39.130 0.00 0.00 0.00 2.12
277 282 6.982160 TTTAGCCCACCGATCTTTACTATA 57.018 37.500 0.00 0.00 0.00 1.31
278 283 6.585695 TTAGCCCACCGATCTTTACTATAG 57.414 41.667 0.00 0.00 0.00 1.31
279 284 4.481072 AGCCCACCGATCTTTACTATAGT 58.519 43.478 10.87 10.87 0.00 2.12
281 286 6.254522 AGCCCACCGATCTTTACTATAGTAT 58.745 40.000 13.34 0.00 0.00 2.12
282 287 6.724905 AGCCCACCGATCTTTACTATAGTATT 59.275 38.462 13.34 0.00 0.00 1.89
283 288 7.892241 AGCCCACCGATCTTTACTATAGTATTA 59.108 37.037 13.34 4.57 0.00 0.98
303 308 9.654663 AGTATTAAAGACAAATGTGTAGGAGTC 57.345 33.333 0.00 0.00 38.41 3.36
304 309 7.596749 ATTAAAGACAAATGTGTAGGAGTCG 57.403 36.000 0.00 0.00 38.41 4.18
305 310 4.602340 AAGACAAATGTGTAGGAGTCGT 57.398 40.909 0.00 0.00 38.41 4.34
306 311 4.602340 AGACAAATGTGTAGGAGTCGTT 57.398 40.909 0.00 0.00 38.41 3.85
307 312 4.557205 AGACAAATGTGTAGGAGTCGTTC 58.443 43.478 0.00 0.00 38.41 3.95
309 314 1.992170 AATGTGTAGGAGTCGTTCGC 58.008 50.000 0.00 0.00 0.00 4.70
310 315 0.172803 ATGTGTAGGAGTCGTTCGCC 59.827 55.000 0.00 0.00 36.23 5.54
312 317 0.456312 GTGTAGGAGTCGTTCGCCTG 60.456 60.000 13.35 0.00 45.64 4.85
313 318 0.607217 TGTAGGAGTCGTTCGCCTGA 60.607 55.000 13.35 1.31 45.64 3.86
314 319 0.179169 GTAGGAGTCGTTCGCCTGAC 60.179 60.000 13.35 6.51 45.64 3.51
319 538 2.602878 GAGTCGTTCGCCTGACATTAA 58.397 47.619 4.09 0.00 37.58 1.40
323 542 1.592110 CGTTCGCCTGACATTAATGCG 60.592 52.381 15.48 12.46 46.09 4.73
324 543 0.376852 TTCGCCTGACATTAATGCGC 59.623 50.000 15.48 0.00 44.50 6.09
327 546 1.467204 CGCCTGACATTAATGCGCAAA 60.467 47.619 17.11 5.32 38.69 3.68
329 548 2.670789 GCCTGACATTAATGCGCAAACA 60.671 45.455 17.11 0.00 0.00 2.83
333 552 5.220265 CCTGACATTAATGCGCAAACAATTC 60.220 40.000 17.11 8.34 0.00 2.17
344 563 4.085107 GCGCAAACAATTCGAAAATCAAGT 60.085 37.500 0.30 0.00 0.00 3.16
368 590 9.046296 AGTCATTAAAATCAATTAGCTAGACGG 57.954 33.333 0.00 0.00 0.00 4.79
370 592 9.391006 TCATTAAAATCAATTAGCTAGACGGTT 57.609 29.630 0.00 0.00 0.00 4.44
378 600 8.638685 TCAATTAGCTAGACGGTTAATTACAC 57.361 34.615 0.00 0.00 33.22 2.90
379 601 8.252417 TCAATTAGCTAGACGGTTAATTACACA 58.748 33.333 0.00 0.00 33.22 3.72
391 613 9.081997 ACGGTTAATTACACATGCAATTAATTG 57.918 29.630 21.54 21.54 38.30 2.32
392 614 9.295214 CGGTTAATTACACATGCAATTAATTGA 57.705 29.630 28.33 15.28 38.30 2.57
437 857 4.349663 TTTCACGCCGAATCAATTTAGG 57.650 40.909 0.00 0.00 32.32 2.69
441 861 3.374058 CACGCCGAATCAATTTAGGAACT 59.626 43.478 0.00 0.00 46.37 3.01
442 862 4.569162 CACGCCGAATCAATTTAGGAACTA 59.431 41.667 0.00 0.00 41.75 2.24
522 1119 8.024145 AGAAGTAGGGATTTTTAGATGACGAT 57.976 34.615 0.00 0.00 0.00 3.73
527 1124 6.595682 AGGGATTTTTAGATGACGATCATGT 58.404 36.000 5.41 4.55 37.20 3.21
530 1127 7.355778 GGATTTTTAGATGACGATCATGTTCC 58.644 38.462 5.41 2.60 37.20 3.62
533 1130 0.504384 GATGACGATCATGTTCCGCG 59.496 55.000 0.00 0.00 37.20 6.46
539 1136 1.845809 GATCATGTTCCGCGGGATGC 61.846 60.000 27.83 13.40 41.47 3.91
551 1940 0.729116 CGGGATGCTCACATGTTGAC 59.271 55.000 0.00 0.00 36.35 3.18
557 1946 0.944386 GCTCACATGTTGACGGTTGT 59.056 50.000 0.00 0.00 0.00 3.32
570 1959 1.009335 GGTTGTCAAACCGTTCGCC 60.009 57.895 0.00 0.00 46.32 5.54
580 1969 4.084888 CGTTCGCCGGCAAGGTTC 62.085 66.667 28.98 8.99 43.70 3.62
617 2282 0.033504 TCAGTGCCTTCGAGGACAAC 59.966 55.000 0.00 0.00 37.67 3.32
620 2285 2.342648 GCCTTCGAGGACAACGGT 59.657 61.111 0.00 0.00 37.67 4.83
621 2286 2.027625 GCCTTCGAGGACAACGGTG 61.028 63.158 0.00 0.00 37.67 4.94
622 2287 1.663739 CCTTCGAGGACAACGGTGA 59.336 57.895 7.88 0.00 37.67 4.02
623 2288 0.666577 CCTTCGAGGACAACGGTGAC 60.667 60.000 7.88 0.00 37.67 3.67
638 2303 3.411808 TGACGACACGGCACTATTC 57.588 52.632 0.00 0.00 41.22 1.75
641 2306 1.654105 GACGACACGGCACTATTCTTG 59.346 52.381 0.00 0.00 33.63 3.02
645 2310 3.423123 CGACACGGCACTATTCTTGAAAC 60.423 47.826 0.00 0.00 0.00 2.78
646 2311 2.812011 ACACGGCACTATTCTTGAAACC 59.188 45.455 0.00 0.00 0.00 3.27
649 2314 2.161609 CGGCACTATTCTTGAAACCCAC 59.838 50.000 0.00 0.00 0.00 4.61
650 2315 2.492088 GGCACTATTCTTGAAACCCACC 59.508 50.000 0.00 0.00 0.00 4.61
668 2333 3.496160 CCACCCCGTAGCAATATTTAGCT 60.496 47.826 5.68 5.68 44.55 3.32
669 2334 4.262721 CCACCCCGTAGCAATATTTAGCTA 60.263 45.833 3.92 3.92 42.05 3.32
670 2335 4.929808 CACCCCGTAGCAATATTTAGCTAG 59.070 45.833 7.55 3.75 43.39 3.42
671 2336 4.591924 ACCCCGTAGCAATATTTAGCTAGT 59.408 41.667 7.55 1.34 43.39 2.57
672 2337 5.071384 ACCCCGTAGCAATATTTAGCTAGTT 59.929 40.000 7.55 0.00 43.39 2.24
673 2338 5.995897 CCCCGTAGCAATATTTAGCTAGTTT 59.004 40.000 7.55 0.00 43.39 2.66
674 2339 6.485648 CCCCGTAGCAATATTTAGCTAGTTTT 59.514 38.462 7.55 0.00 43.39 2.43
675 2340 7.012989 CCCCGTAGCAATATTTAGCTAGTTTTT 59.987 37.037 7.55 0.00 43.39 1.94
763 2446 2.894387 GGATGCACTGAGCTCCGC 60.894 66.667 12.15 11.91 45.94 5.54
797 2488 1.210478 CGATCCCACACTTTCCCATCT 59.790 52.381 0.00 0.00 0.00 2.90
955 2654 0.769873 ATCATCAGCATCCCACCTCC 59.230 55.000 0.00 0.00 0.00 4.30
1211 2910 2.511600 CGCCGATTTTCCTCCGCT 60.512 61.111 0.00 0.00 0.00 5.52
1227 2926 6.120905 TCCTCCGCTATAATATCTACACCTC 58.879 44.000 0.00 0.00 0.00 3.85
1300 2999 5.379732 TCTGCGGTTTGGGTTTAAAATAG 57.620 39.130 0.00 0.00 0.00 1.73
1314 3013 7.541091 GGGTTTAAAATAGTACTGCAAGCTTTC 59.459 37.037 5.39 0.00 37.60 2.62
1322 3021 9.846248 AATAGTACTGCAAGCTTTCTTTATTTG 57.154 29.630 5.39 0.00 37.60 2.32
1325 3024 4.248058 CTGCAAGCTTTCTTTATTTGGGG 58.752 43.478 0.00 0.00 0.00 4.96
1368 3067 7.823745 AACAAACTGTTGGATACTTCTGAAT 57.176 32.000 1.05 0.00 39.45 2.57
1427 3126 1.677637 CTGACCCCTTCTACGGGCTC 61.678 65.000 0.00 0.00 45.37 4.70
1478 3177 1.982395 CGGGAGGGAGCACTACACA 60.982 63.158 0.00 0.00 0.00 3.72
1508 3207 1.898574 CACCACCTTCCAGTGTGCC 60.899 63.158 0.00 0.00 35.93 5.01
1518 3217 3.326578 AGTGTGCCCCGGTATGCA 61.327 61.111 0.00 3.17 34.54 3.96
1567 3267 6.391227 AGTTAATTGTGCAGTTGCTTAACT 57.609 33.333 16.84 16.84 40.39 2.24
1575 3275 3.440173 TGCAGTTGCTTAACTAGGAATGC 59.560 43.478 5.62 0.00 42.66 3.56
1613 3313 7.603024 AGTGTAGTAAAGTGATTTTAGGCAGTC 59.397 37.037 0.00 0.00 32.07 3.51
1633 3333 6.250819 CAGTCGTTTAGTGGCAATAATTGAG 58.749 40.000 8.34 1.33 0.00 3.02
1700 3400 6.852345 CACATTTTGCATTTTAAGAAAGTGGC 59.148 34.615 0.00 0.00 0.00 5.01
1733 3433 4.040952 GTGTAAGAGGTCATGGGATATGCT 59.959 45.833 0.00 0.00 0.00 3.79
1734 3434 4.660303 TGTAAGAGGTCATGGGATATGCTT 59.340 41.667 0.00 0.00 0.00 3.91
1735 3435 3.784511 AGAGGTCATGGGATATGCTTG 57.215 47.619 0.00 0.00 0.00 4.01
1736 3436 2.157738 GAGGTCATGGGATATGCTTGC 58.842 52.381 0.00 0.00 0.00 4.01
1737 3437 1.496001 AGGTCATGGGATATGCTTGCA 59.504 47.619 0.00 0.00 0.00 4.08
1738 3438 2.109480 AGGTCATGGGATATGCTTGCAT 59.891 45.455 12.88 12.88 0.00 3.96
1739 3439 2.895404 GGTCATGGGATATGCTTGCATT 59.105 45.455 13.52 2.15 0.00 3.56
1740 3440 3.322828 GGTCATGGGATATGCTTGCATTT 59.677 43.478 13.52 5.84 0.00 2.32
1741 3441 4.202284 GGTCATGGGATATGCTTGCATTTT 60.202 41.667 13.52 2.22 0.00 1.82
1742 3442 4.748102 GTCATGGGATATGCTTGCATTTTG 59.252 41.667 13.52 2.00 0.00 2.44
1743 3443 3.182341 TGGGATATGCTTGCATTTTGC 57.818 42.857 13.52 7.19 45.29 3.68
1764 3464 3.128764 GCCTTATCCAAACTACTTGCACC 59.871 47.826 0.00 0.00 33.27 5.01
2095 3795 1.003349 CATCCTCCTGATCATCCTGGC 59.997 57.143 0.00 0.00 0.00 4.85
2146 3846 4.694509 GGTGATCATGAGGTATCAATGAGC 59.305 45.833 0.00 1.18 39.39 4.26
2210 3910 7.148474 TGCGTTAATTCCAAACTACTTCATCTC 60.148 37.037 0.00 0.00 0.00 2.75
2604 4304 7.425577 TGTTAAGACTGATTGACACTCATTG 57.574 36.000 0.00 0.00 0.00 2.82
2648 4348 8.589629 CAATATGCTGAACTAGAAACATTTTGC 58.410 33.333 0.00 0.00 0.00 3.68
2675 4375 7.148239 ACAGTCTTTTTCTCGACTTTCAACATT 60.148 33.333 0.00 0.00 38.37 2.71
2681 4381 4.058124 TCTCGACTTTCAACATTGACCAG 58.942 43.478 0.00 0.00 36.83 4.00
2690 4390 8.950210 ACTTTCAACATTGACCAGATATTAGTG 58.050 33.333 6.90 0.00 36.83 2.74
2767 4509 9.346005 TCATGATACATGATAAAGCATTTCTGT 57.654 29.630 9.88 0.00 40.09 3.41
2768 4510 9.608617 CATGATACATGATAAAGCATTTCTGTC 57.391 33.333 0.00 0.00 40.09 3.51
2769 4511 8.158169 TGATACATGATAAAGCATTTCTGTCC 57.842 34.615 0.00 0.00 40.09 4.02
2770 4512 7.994911 TGATACATGATAAAGCATTTCTGTCCT 59.005 33.333 0.00 0.00 40.09 3.85
2771 4513 8.757982 ATACATGATAAAGCATTTCTGTCCTT 57.242 30.769 0.00 0.00 40.09 3.36
2772 4514 7.093322 ACATGATAAAGCATTTCTGTCCTTC 57.907 36.000 0.00 0.00 40.09 3.46
2773 4515 6.096001 ACATGATAAAGCATTTCTGTCCTTCC 59.904 38.462 0.00 0.00 40.09 3.46
2774 4516 4.949856 TGATAAAGCATTTCTGTCCTTCCC 59.050 41.667 0.00 0.00 40.09 3.97
2775 4517 2.222227 AAGCATTTCTGTCCTTCCCC 57.778 50.000 0.00 0.00 0.00 4.81
2776 4518 0.332972 AGCATTTCTGTCCTTCCCCC 59.667 55.000 0.00 0.00 0.00 5.40
2777 4519 1.032114 GCATTTCTGTCCTTCCCCCG 61.032 60.000 0.00 0.00 0.00 5.73
2778 4520 1.032114 CATTTCTGTCCTTCCCCCGC 61.032 60.000 0.00 0.00 0.00 6.13
2779 4521 1.497309 ATTTCTGTCCTTCCCCCGCA 61.497 55.000 0.00 0.00 0.00 5.69
2780 4522 1.710996 TTTCTGTCCTTCCCCCGCAA 61.711 55.000 0.00 0.00 0.00 4.85
2781 4523 1.710996 TTCTGTCCTTCCCCCGCAAA 61.711 55.000 0.00 0.00 0.00 3.68
2782 4524 1.228429 CTGTCCTTCCCCCGCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
2783 4525 0.825840 CTGTCCTTCCCCCGCAAAAA 60.826 55.000 0.00 0.00 0.00 1.94
2816 4558 6.377327 TCTGTCCTTTTGAGTCATTTGAAC 57.623 37.500 0.00 0.00 0.00 3.18
2833 4575 7.811713 TCATTTGAACATCTCATAGCTAGATCG 59.188 37.037 0.00 0.00 32.78 3.69
2839 4581 5.299028 ACATCTCATAGCTAGATCGGCATAG 59.701 44.000 14.28 0.28 31.22 2.23
2988 4730 9.685276 AAAATTTTCTTTCAAATCCAGGAAAGT 57.315 25.926 12.28 0.00 46.29 2.66
3103 4845 8.789762 GTTGGCCTAACTTTTCTTAACTCAATA 58.210 33.333 3.32 0.00 36.34 1.90
3127 4869 0.038526 CGACGTGCTTGGTACTTCCT 60.039 55.000 0.00 0.00 37.07 3.36
3148 4892 9.608617 CTTCCTTGATTGATTCAATAATGATCG 57.391 33.333 11.79 0.00 43.30 3.69
3178 4922 6.441093 AAGTCATGATCACGCAAATGTATT 57.559 33.333 0.00 0.00 0.00 1.89
3179 4923 6.441093 AGTCATGATCACGCAAATGTATTT 57.559 33.333 0.00 0.00 0.00 1.40
3198 4942 8.319057 TGTATTTTCCATGTAGTGAGGACTAT 57.681 34.615 0.00 0.00 37.03 2.12
3228 4972 5.130975 AGTGCCAACAATATCTGATGTCCTA 59.869 40.000 0.00 0.00 0.00 2.94
3456 5200 4.202524 TGCATAACTGGGGTGAGTTTAGTT 60.203 41.667 0.00 0.00 37.38 2.24
3497 5241 8.594881 ATTACTATTTGCTCCTTTATCGTCTG 57.405 34.615 0.00 0.00 0.00 3.51
3767 5525 3.927142 CCGTTCAGTTCTGGAATACACTC 59.073 47.826 0.00 0.00 0.00 3.51
3810 5568 6.909550 AGTTAATTTCCATGTTGCACCTTA 57.090 33.333 0.00 0.00 0.00 2.69
3811 5569 6.687604 AGTTAATTTCCATGTTGCACCTTAC 58.312 36.000 0.00 0.00 0.00 2.34
3812 5570 6.493458 AGTTAATTTCCATGTTGCACCTTACT 59.507 34.615 0.00 0.00 0.00 2.24
3813 5571 5.391312 AATTTCCATGTTGCACCTTACTC 57.609 39.130 0.00 0.00 0.00 2.59
3814 5572 3.788227 TTCCATGTTGCACCTTACTCT 57.212 42.857 0.00 0.00 0.00 3.24
3815 5573 3.057969 TCCATGTTGCACCTTACTCTG 57.942 47.619 0.00 0.00 0.00 3.35
3816 5574 2.086869 CCATGTTGCACCTTACTCTGG 58.913 52.381 0.00 0.00 0.00 3.86
3817 5575 1.470098 CATGTTGCACCTTACTCTGGC 59.530 52.381 0.00 0.00 0.00 4.85
3818 5576 0.602638 TGTTGCACCTTACTCTGGCG 60.603 55.000 0.00 0.00 0.00 5.69
3819 5577 1.003839 TTGCACCTTACTCTGGCGG 60.004 57.895 0.00 0.00 0.00 6.13
3820 5578 2.125106 GCACCTTACTCTGGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
3821 5579 2.955881 GCACCTTACTCTGGCGGGT 61.956 63.158 0.00 0.00 0.00 5.28
3822 5580 1.677552 CACCTTACTCTGGCGGGTT 59.322 57.895 0.00 0.00 0.00 4.11
3823 5581 0.036306 CACCTTACTCTGGCGGGTTT 59.964 55.000 0.00 0.00 0.00 3.27
3824 5582 0.769247 ACCTTACTCTGGCGGGTTTT 59.231 50.000 0.00 0.00 0.00 2.43
3825 5583 1.144298 ACCTTACTCTGGCGGGTTTTT 59.856 47.619 0.00 0.00 0.00 1.94
3850 5608 1.016653 GCTGACTCTGGCGTTCCTTC 61.017 60.000 0.00 0.00 0.00 3.46
3916 5674 7.553760 ACTCATGCATTCTTTCTTTTGGTTTTT 59.446 29.630 0.00 0.00 0.00 1.94
3998 5756 4.820894 ACTGTCCCCTAGTGTTATGTTC 57.179 45.455 0.00 0.00 0.00 3.18
4000 5758 4.595781 ACTGTCCCCTAGTGTTATGTTCAA 59.404 41.667 0.00 0.00 0.00 2.69
4056 5814 7.826252 TCTTAAGCAGAAAATATTCAGTGCTCT 59.174 33.333 15.11 10.08 42.79 4.09
4270 6028 0.748450 ATGGCATGGGAAAGCAATCG 59.252 50.000 0.00 0.00 0.00 3.34
4411 6169 8.187354 GGTAACTAGTTCTTTTATGTCTCAGC 57.813 38.462 12.39 0.00 0.00 4.26
4435 6193 6.291849 GCGTATAGTACTTGTGCTCATGAAAG 60.292 42.308 0.00 0.00 0.00 2.62
4523 6281 3.970640 GAGGAGGGAACTGGATATTGTCT 59.029 47.826 0.00 0.00 44.43 3.41
4634 6392 0.107643 GTGGATTAGCAGAGAGGCCC 59.892 60.000 0.00 0.00 0.00 5.80
4714 6472 6.321717 TGTGAATCGATATTTCCTGTTTTGC 58.678 36.000 0.00 0.00 0.00 3.68
5034 6792 4.272261 GGTGCCATTTTTGTGTTTACTTGG 59.728 41.667 0.00 0.00 0.00 3.61
5750 7551 9.515226 AAGTAATTTAGTACTGCCATTTCTTCA 57.485 29.630 5.39 0.00 34.50 3.02
6064 7867 7.097834 ACATAGAGGTACTTTCTGCAACTTAC 58.902 38.462 9.71 0.00 41.55 2.34
6081 7884 5.479716 ACTTACAAAAGTTGTCTCAACCG 57.520 39.130 8.68 0.01 43.60 4.44
6095 7898 3.875134 TCTCAACCGAACTTTCTGGAAAC 59.125 43.478 6.79 0.00 0.00 2.78
6190 7994 1.412710 TCAGTATGGGATCTTGACGGC 59.587 52.381 0.00 0.00 36.16 5.68
6437 8241 3.209812 CGCTCGAGATCGGGTCCA 61.210 66.667 18.75 0.00 42.89 4.02
6482 8286 7.254795 GCACATACAAGGTAAGAATGTCCATAC 60.255 40.741 0.00 0.00 0.00 2.39
6511 8315 2.421424 GTCAAAGAAATCCGCAGCTGAT 59.579 45.455 20.43 0.00 0.00 2.90
6621 8425 1.879380 TGGTCTGTGGAGCAAAATTCG 59.121 47.619 0.00 0.00 45.39 3.34
6740 8544 3.118629 GCACACCTCTGAATCATCCACTA 60.119 47.826 0.00 0.00 0.00 2.74
6760 8564 3.207044 AGGGAGAATTACAGGGACACT 57.793 47.619 0.00 0.00 0.00 3.55
6876 8680 1.075601 AAGCCCAGGGTCATTCTGAA 58.924 50.000 7.55 0.00 34.36 3.02
6895 8699 5.899547 TCTGAAAGGCTGGAACTATCATCTA 59.100 40.000 0.00 0.00 0.00 1.98
6921 8725 0.742281 GCAGTGATGATGTGAGGCGT 60.742 55.000 0.00 0.00 0.00 5.68
6942 8746 1.804151 GCTTTGTCCGTGAACATGCTA 59.196 47.619 0.00 0.00 0.00 3.49
6943 8747 2.420022 GCTTTGTCCGTGAACATGCTAT 59.580 45.455 0.00 0.00 0.00 2.97
6944 8748 3.119849 GCTTTGTCCGTGAACATGCTATT 60.120 43.478 0.00 0.00 0.00 1.73
6945 8749 4.406069 CTTTGTCCGTGAACATGCTATTG 58.594 43.478 0.00 0.00 0.00 1.90
6946 8750 3.326836 TGTCCGTGAACATGCTATTGA 57.673 42.857 0.00 0.00 0.00 2.57
6991 8803 5.968167 TCCATGTAAACTAAGTACATCCCCT 59.032 40.000 0.00 0.00 39.60 4.79
6994 8806 6.045072 TGTAAACTAAGTACATCCCCTGTG 57.955 41.667 0.00 0.00 38.92 3.66
7095 8907 2.273370 CATCAGCAATGCTTGTGGAC 57.727 50.000 4.36 0.00 36.40 4.02
7100 8912 2.161012 CAGCAATGCTTGTGGACTAGTG 59.839 50.000 4.36 0.00 36.40 2.74
7114 8926 5.807520 GTGGACTAGTGTCATGACTGTTATG 59.192 44.000 25.55 13.22 44.61 1.90
7125 8937 2.490509 TGACTGTTATGATGTCGACGGT 59.509 45.455 11.62 1.47 34.50 4.83
7364 9176 4.155709 AGCCATCCGATCTCATCTCTAAA 58.844 43.478 0.00 0.00 0.00 1.85
7380 9192 5.603596 TCTCTAAAGCCGAACTTGTGTTTA 58.396 37.500 0.00 0.00 39.09 2.01
7480 9292 2.724690 CACGATTTGTCTTCGTCTCGTT 59.275 45.455 0.00 0.00 46.13 3.85
7661 9638 1.995376 AGTTCGGGCAAAACCAATCT 58.005 45.000 0.00 0.00 42.05 2.40
7706 9683 3.573967 GTGAATCCAAGCCTTTTCCTTGA 59.426 43.478 2.93 0.00 41.64 3.02
7712 9689 0.472471 AGCCTTTTCCTTGACACGGA 59.528 50.000 0.00 0.00 0.00 4.69
7833 9811 9.601810 ACTTTTTATCTTCCCCTTGTATCTTTT 57.398 29.630 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.462174 CAACTTTGATTATAGTTGCTGTTTTGA 57.538 29.630 7.66 0.00 43.13 2.69
8 9 8.702438 CCAACTTTGATTATAGTTGCTGTTTTG 58.298 33.333 13.19 0.00 46.18 2.44
9 10 7.384932 GCCAACTTTGATTATAGTTGCTGTTTT 59.615 33.333 13.19 0.00 46.18 2.43
10 11 6.868339 GCCAACTTTGATTATAGTTGCTGTTT 59.132 34.615 13.19 0.00 46.18 2.83
11 12 6.389906 GCCAACTTTGATTATAGTTGCTGTT 58.610 36.000 13.19 0.00 46.18 3.16
12 13 5.105756 GGCCAACTTTGATTATAGTTGCTGT 60.106 40.000 13.19 0.00 46.18 4.40
13 14 5.343249 GGCCAACTTTGATTATAGTTGCTG 58.657 41.667 13.19 4.70 46.18 4.41
14 15 4.096382 CGGCCAACTTTGATTATAGTTGCT 59.904 41.667 13.19 0.00 46.18 3.91
15 16 4.351192 CGGCCAACTTTGATTATAGTTGC 58.649 43.478 13.19 9.59 46.18 4.17
16 17 4.733523 GCCGGCCAACTTTGATTATAGTTG 60.734 45.833 18.11 12.09 46.77 3.16
17 18 3.380320 GCCGGCCAACTTTGATTATAGTT 59.620 43.478 18.11 0.00 35.06 2.24
18 19 2.949644 GCCGGCCAACTTTGATTATAGT 59.050 45.455 18.11 0.00 0.00 2.12
19 20 2.293399 GGCCGGCCAACTTTGATTATAG 59.707 50.000 40.73 0.00 35.81 1.31
20 21 2.303175 GGCCGGCCAACTTTGATTATA 58.697 47.619 40.73 0.00 35.81 0.98
21 22 1.111277 GGCCGGCCAACTTTGATTAT 58.889 50.000 40.73 0.00 35.81 1.28
22 23 0.968393 GGGCCGGCCAACTTTGATTA 60.968 55.000 44.46 0.00 37.98 1.75
23 24 2.282783 GGGCCGGCCAACTTTGATT 61.283 57.895 44.46 0.00 37.98 2.57
24 25 2.679996 GGGCCGGCCAACTTTGAT 60.680 61.111 44.46 0.00 37.98 2.57
25 26 3.521765 ATGGGCCGGCCAACTTTGA 62.522 57.895 44.46 19.90 37.98 2.69
26 27 2.110757 AAATGGGCCGGCCAACTTTG 62.111 55.000 44.46 0.00 37.98 2.77
27 28 1.841103 AAATGGGCCGGCCAACTTT 60.841 52.632 44.46 33.43 37.98 2.66
28 29 2.203773 AAATGGGCCGGCCAACTT 60.204 55.556 44.46 30.64 37.98 2.66
29 30 2.996734 CAAATGGGCCGGCCAACT 60.997 61.111 44.46 25.87 37.98 3.16
30 31 2.994417 TCAAATGGGCCGGCCAAC 60.994 61.111 44.46 29.61 37.98 3.77
31 32 2.994417 GTCAAATGGGCCGGCCAA 60.994 61.111 44.46 37.76 37.98 4.52
35 36 3.140141 ATGCGTCAAATGGGCCGG 61.140 61.111 0.00 0.00 0.00 6.13
36 37 2.102749 CATGCGTCAAATGGGCCG 59.897 61.111 0.00 0.00 0.00 6.13
37 38 2.202783 GCATGCGTCAAATGGGCC 60.203 61.111 0.00 0.00 0.00 5.80
38 39 1.806758 GTGCATGCGTCAAATGGGC 60.807 57.895 14.09 0.00 0.00 5.36
39 40 0.733566 GTGTGCATGCGTCAAATGGG 60.734 55.000 14.09 0.00 0.00 4.00
40 41 0.039346 TGTGTGCATGCGTCAAATGG 60.039 50.000 14.09 0.00 0.00 3.16
41 42 1.985334 ATGTGTGCATGCGTCAAATG 58.015 45.000 14.09 0.00 33.37 2.32
42 43 2.728690 AATGTGTGCATGCGTCAAAT 57.271 40.000 14.09 12.31 35.15 2.32
43 44 2.505628 AAATGTGTGCATGCGTCAAA 57.494 40.000 14.09 10.45 35.15 2.69
44 45 2.505628 AAAATGTGTGCATGCGTCAA 57.494 40.000 14.09 6.61 35.15 3.18
45 46 2.505628 AAAAATGTGTGCATGCGTCA 57.494 40.000 14.09 12.09 35.15 4.35
91 92 9.249053 TGGTCATAGGAAAAATAAAGCATACAA 57.751 29.630 0.00 0.00 0.00 2.41
92 93 8.815565 TGGTCATAGGAAAAATAAAGCATACA 57.184 30.769 0.00 0.00 0.00 2.29
93 94 9.516314 GTTGGTCATAGGAAAAATAAAGCATAC 57.484 33.333 0.00 0.00 0.00 2.39
94 95 8.691797 GGTTGGTCATAGGAAAAATAAAGCATA 58.308 33.333 0.00 0.00 0.00 3.14
95 96 7.180051 TGGTTGGTCATAGGAAAAATAAAGCAT 59.820 33.333 0.00 0.00 0.00 3.79
96 97 6.495181 TGGTTGGTCATAGGAAAAATAAAGCA 59.505 34.615 0.00 0.00 0.00 3.91
97 98 6.930731 TGGTTGGTCATAGGAAAAATAAAGC 58.069 36.000 0.00 0.00 0.00 3.51
98 99 9.942850 AATTGGTTGGTCATAGGAAAAATAAAG 57.057 29.630 0.00 0.00 0.00 1.85
103 104 9.320295 AGAATAATTGGTTGGTCATAGGAAAAA 57.680 29.630 0.00 0.00 0.00 1.94
104 105 8.748412 CAGAATAATTGGTTGGTCATAGGAAAA 58.252 33.333 0.00 0.00 0.00 2.29
105 106 7.341769 CCAGAATAATTGGTTGGTCATAGGAAA 59.658 37.037 0.00 0.00 0.00 3.13
106 107 6.833416 CCAGAATAATTGGTTGGTCATAGGAA 59.167 38.462 0.00 0.00 0.00 3.36
107 108 6.159575 TCCAGAATAATTGGTTGGTCATAGGA 59.840 38.462 0.00 0.00 37.02 2.94
108 109 6.364701 TCCAGAATAATTGGTTGGTCATAGG 58.635 40.000 0.00 0.00 37.02 2.57
109 110 8.469309 AATCCAGAATAATTGGTTGGTCATAG 57.531 34.615 0.00 0.00 37.02 2.23
110 111 8.837099 AAATCCAGAATAATTGGTTGGTCATA 57.163 30.769 0.00 0.00 37.02 2.15
111 112 7.738437 AAATCCAGAATAATTGGTTGGTCAT 57.262 32.000 0.00 0.00 37.02 3.06
112 113 7.147915 GCTAAATCCAGAATAATTGGTTGGTCA 60.148 37.037 0.00 0.00 37.02 4.02
113 114 7.147915 TGCTAAATCCAGAATAATTGGTTGGTC 60.148 37.037 0.00 0.00 37.02 4.02
114 115 6.667414 TGCTAAATCCAGAATAATTGGTTGGT 59.333 34.615 0.00 0.00 37.02 3.67
115 116 7.111247 TGCTAAATCCAGAATAATTGGTTGG 57.889 36.000 0.00 0.00 37.02 3.77
116 117 8.199449 ACATGCTAAATCCAGAATAATTGGTTG 58.801 33.333 0.00 0.00 37.02 3.77
117 118 8.310122 ACATGCTAAATCCAGAATAATTGGTT 57.690 30.769 0.00 0.00 37.02 3.67
118 119 7.902920 ACATGCTAAATCCAGAATAATTGGT 57.097 32.000 0.00 0.00 37.02 3.67
119 120 9.683069 GTAACATGCTAAATCCAGAATAATTGG 57.317 33.333 0.00 0.00 37.04 3.16
120 121 9.683069 GGTAACATGCTAAATCCAGAATAATTG 57.317 33.333 0.00 0.00 0.00 2.32
121 122 9.420118 TGGTAACATGCTAAATCCAGAATAATT 57.580 29.630 0.00 0.00 46.17 1.40
122 123 8.995027 TGGTAACATGCTAAATCCAGAATAAT 57.005 30.769 0.00 0.00 46.17 1.28
145 146 0.107456 ACAGGTCTGTGCTGTTCTGG 59.893 55.000 2.46 0.00 43.11 3.86
151 152 0.313987 TGACGTACAGGTCTGTGCTG 59.686 55.000 13.32 10.46 44.63 4.41
152 153 0.314302 GTGACGTACAGGTCTGTGCT 59.686 55.000 13.32 3.07 44.63 4.40
153 154 0.031585 TGTGACGTACAGGTCTGTGC 59.968 55.000 13.32 10.96 44.63 4.57
171 173 1.344942 GCGACGCTACCAACTCACTG 61.345 60.000 13.73 0.00 0.00 3.66
172 174 1.080705 GCGACGCTACCAACTCACT 60.081 57.895 13.73 0.00 0.00 3.41
189 191 3.118408 GGGGGTTTAATTGGAATGAAGGC 60.118 47.826 0.00 0.00 0.00 4.35
193 195 4.775253 GTGAAGGGGGTTTAATTGGAATGA 59.225 41.667 0.00 0.00 0.00 2.57
196 198 3.512496 GGTGAAGGGGGTTTAATTGGAA 58.488 45.455 0.00 0.00 0.00 3.53
198 200 1.822371 CGGTGAAGGGGGTTTAATTGG 59.178 52.381 0.00 0.00 0.00 3.16
200 202 3.750501 ATCGGTGAAGGGGGTTTAATT 57.249 42.857 0.00 0.00 0.00 1.40
201 203 3.750501 AATCGGTGAAGGGGGTTTAAT 57.249 42.857 0.00 0.00 0.00 1.40
203 205 3.529216 AAAATCGGTGAAGGGGGTTTA 57.471 42.857 0.00 0.00 0.00 2.01
207 209 0.808755 CGAAAAATCGGTGAAGGGGG 59.191 55.000 0.00 0.00 0.00 5.40
208 210 1.199097 CACGAAAAATCGGTGAAGGGG 59.801 52.381 3.12 0.00 37.45 4.79
209 211 1.877443 ACACGAAAAATCGGTGAAGGG 59.123 47.619 3.12 0.00 37.45 3.95
211 213 3.493129 TGAGACACGAAAAATCGGTGAAG 59.507 43.478 3.12 0.00 37.45 3.02
212 214 3.246699 GTGAGACACGAAAAATCGGTGAA 59.753 43.478 3.12 0.00 37.45 3.18
213 215 2.798283 GTGAGACACGAAAAATCGGTGA 59.202 45.455 3.12 0.00 37.45 4.02
215 217 2.140717 GGTGAGACACGAAAAATCGGT 58.859 47.619 3.12 0.00 34.83 4.69
218 220 8.742554 AATAAATTGGTGAGACACGAAAAATC 57.257 30.769 0.00 0.00 35.88 2.17
219 221 8.977505 CAAATAAATTGGTGAGACACGAAAAAT 58.022 29.630 0.00 0.00 35.88 1.82
220 222 8.191446 TCAAATAAATTGGTGAGACACGAAAAA 58.809 29.630 0.00 0.00 35.88 1.94
221 223 7.708051 TCAAATAAATTGGTGAGACACGAAAA 58.292 30.769 0.00 0.00 35.88 2.29
225 227 7.594758 ACAATTCAAATAAATTGGTGAGACACG 59.405 33.333 12.46 0.00 46.32 4.49
226 228 8.816640 ACAATTCAAATAAATTGGTGAGACAC 57.183 30.769 12.46 0.00 46.32 3.67
277 282 9.654663 GACTCCTACACATTTGTCTTTAATACT 57.345 33.333 0.00 0.00 37.15 2.12
278 283 8.592998 CGACTCCTACACATTTGTCTTTAATAC 58.407 37.037 0.00 0.00 37.15 1.89
279 284 8.308931 ACGACTCCTACACATTTGTCTTTAATA 58.691 33.333 0.00 0.00 37.15 0.98
281 286 6.518493 ACGACTCCTACACATTTGTCTTTAA 58.482 36.000 0.00 0.00 37.15 1.52
282 287 6.092955 ACGACTCCTACACATTTGTCTTTA 57.907 37.500 0.00 0.00 37.15 1.85
283 288 4.957296 ACGACTCCTACACATTTGTCTTT 58.043 39.130 0.00 0.00 37.15 2.52
285 290 4.557205 GAACGACTCCTACACATTTGTCT 58.443 43.478 0.00 0.00 37.15 3.41
286 291 3.364023 CGAACGACTCCTACACATTTGTC 59.636 47.826 0.00 0.00 37.15 3.18
289 294 2.334838 GCGAACGACTCCTACACATTT 58.665 47.619 0.00 0.00 0.00 2.32
293 298 0.456312 CAGGCGAACGACTCCTACAC 60.456 60.000 0.00 0.00 31.85 2.90
294 299 0.607217 TCAGGCGAACGACTCCTACA 60.607 55.000 0.00 0.00 31.85 2.74
295 300 0.179169 GTCAGGCGAACGACTCCTAC 60.179 60.000 0.00 0.00 31.85 3.18
297 302 1.251527 ATGTCAGGCGAACGACTCCT 61.252 55.000 0.00 0.00 33.51 3.69
298 303 0.389948 AATGTCAGGCGAACGACTCC 60.390 55.000 0.00 0.00 33.18 3.85
299 304 2.273370 TAATGTCAGGCGAACGACTC 57.727 50.000 0.00 0.00 33.18 3.36
301 306 2.536928 GCATTAATGTCAGGCGAACGAC 60.537 50.000 16.61 0.00 0.00 4.34
302 307 1.663643 GCATTAATGTCAGGCGAACGA 59.336 47.619 16.61 0.00 0.00 3.85
303 308 2.091152 GCATTAATGTCAGGCGAACG 57.909 50.000 16.61 0.00 0.00 3.95
309 314 3.214697 TGTTTGCGCATTAATGTCAGG 57.785 42.857 12.75 5.63 0.00 3.86
310 315 5.497439 CGAATTGTTTGCGCATTAATGTCAG 60.497 40.000 12.75 9.69 0.00 3.51
311 316 4.323070 CGAATTGTTTGCGCATTAATGTCA 59.677 37.500 12.75 11.83 0.00 3.58
312 317 4.556912 TCGAATTGTTTGCGCATTAATGTC 59.443 37.500 12.75 4.67 0.00 3.06
313 318 4.480541 TCGAATTGTTTGCGCATTAATGT 58.519 34.783 12.75 0.00 0.00 2.71
314 319 5.433081 TTCGAATTGTTTGCGCATTAATG 57.567 34.783 12.75 11.27 0.00 1.90
319 538 3.986572 TGATTTTCGAATTGTTTGCGCAT 59.013 34.783 12.75 0.00 0.00 4.73
323 542 6.509317 TGACTTGATTTTCGAATTGTTTGC 57.491 33.333 0.00 0.00 0.00 3.68
344 563 8.958119 ACCGTCTAGCTAATTGATTTTAATGA 57.042 30.769 0.00 0.00 0.00 2.57
361 583 6.656314 TTGCATGTGTAATTAACCGTCTAG 57.344 37.500 0.00 0.00 0.00 2.43
362 584 7.618502 AATTGCATGTGTAATTAACCGTCTA 57.381 32.000 7.19 0.00 38.31 2.59
419 839 3.374058 AGTTCCTAAATTGATTCGGCGTG 59.626 43.478 6.85 0.00 0.00 5.34
420 840 3.606687 AGTTCCTAAATTGATTCGGCGT 58.393 40.909 6.85 0.00 0.00 5.68
421 841 5.293569 ACTTAGTTCCTAAATTGATTCGGCG 59.706 40.000 0.00 0.00 0.00 6.46
466 886 8.818622 TCAGTAGGCTTAACTAATTCTGTCTA 57.181 34.615 0.00 0.00 0.00 2.59
467 887 7.719871 TCAGTAGGCTTAACTAATTCTGTCT 57.280 36.000 0.00 0.00 0.00 3.41
495 915 9.144298 TCGTCATCTAAAAATCCCTACTTCTAT 57.856 33.333 0.00 0.00 0.00 1.98
500 920 7.361457 TGATCGTCATCTAAAAATCCCTACT 57.639 36.000 0.00 0.00 0.00 2.57
505 925 7.355778 GGAACATGATCGTCATCTAAAAATCC 58.644 38.462 0.00 0.00 34.28 3.01
506 926 7.065894 CGGAACATGATCGTCATCTAAAAATC 58.934 38.462 0.00 0.00 34.28 2.17
509 929 4.270084 GCGGAACATGATCGTCATCTAAAA 59.730 41.667 0.00 0.00 34.28 1.52
512 932 2.604614 CGCGGAACATGATCGTCATCTA 60.605 50.000 0.00 0.00 34.28 1.98
513 933 1.858091 GCGGAACATGATCGTCATCT 58.142 50.000 0.00 0.00 34.28 2.90
514 934 0.504384 CGCGGAACATGATCGTCATC 59.496 55.000 0.00 0.00 34.28 2.92
519 1116 1.300931 ATCCCGCGGAACATGATCG 60.301 57.895 30.73 6.27 34.34 3.69
522 1119 2.513666 GCATCCCGCGGAACATGA 60.514 61.111 30.73 15.93 34.34 3.07
533 1130 0.729116 CGTCAACATGTGAGCATCCC 59.271 55.000 0.00 0.00 36.74 3.85
539 1136 2.949714 GACAACCGTCAACATGTGAG 57.050 50.000 0.00 0.00 42.13 3.51
570 1959 1.856265 GCTTGGTCTGAACCTTGCCG 61.856 60.000 0.00 0.00 46.60 5.69
572 1961 1.576421 CGCTTGGTCTGAACCTTGC 59.424 57.895 0.00 0.19 46.60 4.01
580 1969 3.114616 CCGTCAGCGCTTGGTCTG 61.115 66.667 7.50 0.00 36.67 3.51
598 2219 0.033504 GTTGTCCTCGAAGGCACTGA 59.966 55.000 0.00 0.00 40.86 3.41
599 2220 1.284982 CGTTGTCCTCGAAGGCACTG 61.285 60.000 0.00 0.00 40.86 3.66
617 2282 2.537792 ATAGTGCCGTGTCGTCACCG 62.538 60.000 7.21 2.18 41.09 4.94
620 2285 0.885879 AGAATAGTGCCGTGTCGTCA 59.114 50.000 0.00 0.00 0.00 4.35
621 2286 1.654105 CAAGAATAGTGCCGTGTCGTC 59.346 52.381 0.00 0.00 0.00 4.20
622 2287 1.271379 TCAAGAATAGTGCCGTGTCGT 59.729 47.619 0.00 0.00 0.00 4.34
623 2288 1.990799 TCAAGAATAGTGCCGTGTCG 58.009 50.000 0.00 0.00 0.00 4.35
624 2289 3.120304 GGTTTCAAGAATAGTGCCGTGTC 60.120 47.826 0.00 0.00 0.00 3.67
638 2303 0.958876 GCTACGGGGTGGGTTTCAAG 60.959 60.000 0.00 0.00 0.00 3.02
641 2306 0.323087 ATTGCTACGGGGTGGGTTTC 60.323 55.000 0.00 0.00 0.00 2.78
645 2310 2.358322 AAATATTGCTACGGGGTGGG 57.642 50.000 0.00 0.00 0.00 4.61
646 2311 2.812011 GCTAAATATTGCTACGGGGTGG 59.188 50.000 0.00 0.00 0.00 4.61
649 2314 5.148651 ACTAGCTAAATATTGCTACGGGG 57.851 43.478 3.92 0.00 40.35 5.73
650 2315 7.492352 AAAACTAGCTAAATATTGCTACGGG 57.508 36.000 3.92 0.00 40.35 5.28
687 2352 9.189156 AGCTAAATATTGCTACTGATCCAAAAA 57.811 29.630 0.00 0.00 37.81 1.94
688 2353 8.752005 AGCTAAATATTGCTACTGATCCAAAA 57.248 30.769 0.00 0.00 37.81 2.44
689 2354 9.494271 CTAGCTAAATATTGCTACTGATCCAAA 57.506 33.333 3.92 0.00 40.35 3.28
690 2355 8.651389 ACTAGCTAAATATTGCTACTGATCCAA 58.349 33.333 3.92 0.00 40.35 3.53
691 2356 8.195165 ACTAGCTAAATATTGCTACTGATCCA 57.805 34.615 3.92 0.00 40.35 3.41
692 2357 9.495572 AAACTAGCTAAATATTGCTACTGATCC 57.504 33.333 3.92 0.00 40.35 3.36
694 2359 9.838339 ACAAACTAGCTAAATATTGCTACTGAT 57.162 29.630 3.92 0.00 40.35 2.90
695 2360 9.667107 AACAAACTAGCTAAATATTGCTACTGA 57.333 29.630 3.92 0.00 40.35 3.41
745 2428 2.898738 CGGAGCTCAGTGCATCCT 59.101 61.111 17.19 0.00 45.94 3.24
763 2446 3.391665 GATCGGCTGGGGGTGTCAG 62.392 68.421 0.00 0.00 35.49 3.51
823 2515 0.187361 CAGAGGGGAGAGGGGAGTAG 59.813 65.000 0.00 0.00 0.00 2.57
824 2516 1.950748 GCAGAGGGGAGAGGGGAGTA 61.951 65.000 0.00 0.00 0.00 2.59
825 2517 3.114390 CAGAGGGGAGAGGGGAGT 58.886 66.667 0.00 0.00 0.00 3.85
826 2518 2.445654 GCAGAGGGGAGAGGGGAG 60.446 72.222 0.00 0.00 0.00 4.30
827 2519 4.465446 CGCAGAGGGGAGAGGGGA 62.465 72.222 0.00 0.00 0.00 4.81
898 2597 1.299544 CGGCGGTGGGTTTTTGTTC 60.300 57.895 0.00 0.00 0.00 3.18
931 2630 0.109913 TGGGATGCTGATGATGGAGC 59.890 55.000 0.00 0.00 35.65 4.70
1211 2910 4.954202 CGGCTGGGAGGTGTAGATATTATA 59.046 45.833 0.00 0.00 0.00 0.98
1227 2926 0.105039 GGATCAGAACTACGGCTGGG 59.895 60.000 0.00 0.00 33.05 4.45
1260 2959 4.554134 CGCAGATAGATTACTCCGTCGAAA 60.554 45.833 0.00 0.00 0.00 3.46
1300 2999 5.863935 CCCAAATAAAGAAAGCTTGCAGTAC 59.136 40.000 7.33 0.00 33.79 2.73
1331 3030 1.756538 AGTTTGTTGGTCAAGCAAGGG 59.243 47.619 0.00 0.00 39.24 3.95
1359 3058 1.871772 GCACGCTGCATTCAGAAGT 59.128 52.632 0.00 0.00 44.26 3.01
1427 3126 1.731709 TCGATGATTGCCTCGTTGTTG 59.268 47.619 0.00 0.00 36.33 3.33
1470 3169 5.597813 GTGAAGAACCAGAATGTGTAGTG 57.402 43.478 0.00 0.00 0.00 2.74
1508 3207 2.762745 GGTGTATAACTGCATACCGGG 58.237 52.381 6.32 0.00 31.52 5.73
1567 3267 0.183492 GGGGTCATGCTGCATTCCTA 59.817 55.000 23.59 6.60 0.00 2.94
1575 3275 0.615331 ACTACACTGGGGTCATGCTG 59.385 55.000 0.00 0.00 0.00 4.41
1613 3313 5.235305 AGCTCAATTATTGCCACTAAACG 57.765 39.130 0.00 0.00 0.00 3.60
1633 3333 4.278669 TGGAACTTAGATCGTGGAGATAGC 59.721 45.833 0.00 0.00 40.26 2.97
1673 3373 6.852345 CACTTTCTTAAAATGCAAAATGTGGC 59.148 34.615 0.00 0.00 0.00 5.01
1700 3400 2.417933 GACCTCTTACACTGCTGCAATG 59.582 50.000 9.83 9.83 0.00 2.82
1734 3434 8.004216 CAAGTAGTTTGGATAAGGCAAAATGCA 61.004 37.037 4.57 0.00 37.90 3.96
1735 3435 5.965922 AGTAGTTTGGATAAGGCAAAATGC 58.034 37.500 0.00 0.00 44.08 3.56
1736 3436 6.311200 GCAAGTAGTTTGGATAAGGCAAAATG 59.689 38.462 0.00 0.00 37.26 2.32
1737 3437 6.014669 TGCAAGTAGTTTGGATAAGGCAAAAT 60.015 34.615 0.00 0.00 37.26 1.82
1738 3438 5.303078 TGCAAGTAGTTTGGATAAGGCAAAA 59.697 36.000 0.00 0.00 37.26 2.44
1739 3439 4.830046 TGCAAGTAGTTTGGATAAGGCAAA 59.170 37.500 0.00 0.00 37.26 3.68
1740 3440 4.217550 GTGCAAGTAGTTTGGATAAGGCAA 59.782 41.667 0.00 0.00 39.44 4.52
1741 3441 3.756434 GTGCAAGTAGTTTGGATAAGGCA 59.244 43.478 0.00 0.00 39.44 4.75
1742 3442 3.128764 GGTGCAAGTAGTTTGGATAAGGC 59.871 47.826 0.00 0.00 39.44 4.35
1743 3443 3.374058 CGGTGCAAGTAGTTTGGATAAGG 59.626 47.826 0.00 0.00 39.44 2.69
1764 3464 5.512788 GTCAAATTCACACCAATTATGAGCG 59.487 40.000 0.00 0.00 0.00 5.03
2095 3795 2.901975 TCCCTGAGGAGGAATCGTG 58.098 57.895 0.00 0.00 42.93 4.35
2146 3846 8.592105 TGAATCATTGAAACCTTTTGCTAAAG 57.408 30.769 12.94 12.94 40.38 1.85
2604 4304 7.561556 GCATATTGCATCTAAGTTTTTCATGC 58.438 34.615 0.00 0.00 44.26 4.06
2648 4348 5.718649 TGAAAGTCGAGAAAAAGACTGTG 57.281 39.130 0.00 0.00 45.91 3.66
2675 4375 3.774766 AGCACCACACTAATATCTGGTCA 59.225 43.478 0.00 0.00 34.64 4.02
2681 4381 6.051717 AGTGAATCAGCACCACACTAATATC 58.948 40.000 0.00 0.00 39.52 1.63
2690 4390 3.366679 CCATTTGAGTGAATCAGCACCAC 60.367 47.826 0.00 0.00 39.68 4.16
2762 4504 1.710996 TTTGCGGGGGAAGGACAGAA 61.711 55.000 0.00 0.00 0.00 3.02
2763 4505 1.710996 TTTTGCGGGGGAAGGACAGA 61.711 55.000 0.00 0.00 0.00 3.41
2764 4506 0.825840 TTTTTGCGGGGGAAGGACAG 60.826 55.000 0.00 0.00 0.00 3.51
2765 4507 1.230497 TTTTTGCGGGGGAAGGACA 59.770 52.632 0.00 0.00 0.00 4.02
2766 4508 4.184439 TTTTTGCGGGGGAAGGAC 57.816 55.556 0.00 0.00 0.00 3.85
2783 4525 6.643388 ACTCAAAAGGACAGAAATGCTTTTT 58.357 32.000 2.69 0.00 44.84 1.94
2785 4527 5.360714 TGACTCAAAAGGACAGAAATGCTTT 59.639 36.000 0.00 0.00 41.48 3.51
2786 4528 4.889409 TGACTCAAAAGGACAGAAATGCTT 59.111 37.500 0.00 0.00 0.00 3.91
2787 4529 4.464008 TGACTCAAAAGGACAGAAATGCT 58.536 39.130 0.00 0.00 0.00 3.79
2788 4530 4.836125 TGACTCAAAAGGACAGAAATGC 57.164 40.909 0.00 0.00 0.00 3.56
2789 4531 7.428020 TCAAATGACTCAAAAGGACAGAAATG 58.572 34.615 0.00 0.00 0.00 2.32
2790 4532 7.587037 TCAAATGACTCAAAAGGACAGAAAT 57.413 32.000 0.00 0.00 0.00 2.17
2791 4533 7.093988 TGTTCAAATGACTCAAAAGGACAGAAA 60.094 33.333 0.00 0.00 0.00 2.52
2816 4558 4.652421 ATGCCGATCTAGCTATGAGATG 57.348 45.455 2.13 0.00 33.71 2.90
2988 4730 7.056635 GGGAGAATGGAAATTTGATACAGAGA 58.943 38.462 0.00 0.00 0.00 3.10
3069 4811 6.398095 AGAAAAGTTAGGCCAACATTAATGC 58.602 36.000 15.48 1.07 39.81 3.56
3103 4845 0.390735 GTACCAAGCACGTCGGGATT 60.391 55.000 0.00 0.00 0.00 3.01
3127 4869 9.187455 CAATGCGATCATTATTGAATCAATCAA 57.813 29.630 12.23 6.12 44.87 2.57
3148 4892 3.103738 GCGTGATCATGACTTTCAATGC 58.896 45.455 19.30 2.70 0.00 3.56
3178 4922 5.428253 GCAATAGTCCTCACTACATGGAAA 58.572 41.667 0.00 0.00 37.97 3.13
3179 4923 4.141711 GGCAATAGTCCTCACTACATGGAA 60.142 45.833 0.00 0.00 37.97 3.53
3228 4972 7.513371 TTGGAACGAATTTACCAACATAACT 57.487 32.000 0.00 0.00 37.46 2.24
3366 5110 4.202346 TGCCCAAAAAGAAAGAATTGAGGG 60.202 41.667 0.00 0.00 35.68 4.30
3482 5226 4.215613 ACAAAAACCAGACGATAAAGGAGC 59.784 41.667 0.00 0.00 0.00 4.70
3493 5237 4.545823 TCAATCGACACAAAAACCAGAC 57.454 40.909 0.00 0.00 0.00 3.51
3494 5238 5.106712 GCTATCAATCGACACAAAAACCAGA 60.107 40.000 0.00 0.00 0.00 3.86
3497 5241 4.851558 GTGCTATCAATCGACACAAAAACC 59.148 41.667 0.00 0.00 0.00 3.27
3679 5437 0.970937 TGTCCCCCTCTAGTTCAGCG 60.971 60.000 0.00 0.00 0.00 5.18
3823 5581 1.610624 CGCCAGAGTCAGCCCTAAAAA 60.611 52.381 0.00 0.00 0.00 1.94
3824 5582 0.036388 CGCCAGAGTCAGCCCTAAAA 60.036 55.000 0.00 0.00 0.00 1.52
3825 5583 1.192146 ACGCCAGAGTCAGCCCTAAA 61.192 55.000 0.00 0.00 0.00 1.85
3826 5584 1.192146 AACGCCAGAGTCAGCCCTAA 61.192 55.000 0.00 0.00 0.00 2.69
3827 5585 1.605058 GAACGCCAGAGTCAGCCCTA 61.605 60.000 0.00 0.00 0.00 3.53
3828 5586 2.925170 AACGCCAGAGTCAGCCCT 60.925 61.111 0.00 0.00 0.00 5.19
3829 5587 2.435059 GAACGCCAGAGTCAGCCC 60.435 66.667 0.00 0.00 0.00 5.19
3830 5588 2.435059 GGAACGCCAGAGTCAGCC 60.435 66.667 0.00 0.00 0.00 4.85
3831 5589 1.004440 AAGGAACGCCAGAGTCAGC 60.004 57.895 0.00 0.00 36.29 4.26
3832 5590 0.734253 CGAAGGAACGCCAGAGTCAG 60.734 60.000 0.00 0.00 36.29 3.51
3833 5591 1.289066 CGAAGGAACGCCAGAGTCA 59.711 57.895 0.00 0.00 36.29 3.41
3834 5592 0.319641 AACGAAGGAACGCCAGAGTC 60.320 55.000 0.00 0.00 36.29 3.36
3941 5699 7.016563 TGTGATCCTCTAATATGCCACACTAAT 59.983 37.037 0.00 0.00 0.00 1.73
4056 5814 9.462174 CTTTAACAATGAGAAGTATGCAACAAA 57.538 29.630 0.00 0.00 0.00 2.83
4270 6028 7.023575 CCACACTAATTTCAACATTGTAGAGC 58.976 38.462 0.00 0.00 0.00 4.09
4273 6031 8.514594 ACATCCACACTAATTTCAACATTGTAG 58.485 33.333 0.00 0.00 0.00 2.74
4322 6080 5.656416 GGAACCCAAAATAATGACTCCATGA 59.344 40.000 0.00 0.00 32.36 3.07
4411 6169 6.291849 GCTTTCATGAGCACAAGTACTATACG 60.292 42.308 0.00 0.00 42.25 3.06
4435 6193 6.135290 TGAGATAAATTTACACTGCCATGC 57.865 37.500 0.00 0.00 0.00 4.06
4523 6281 0.901827 TTAGTCGAAGCAGGCCATCA 59.098 50.000 5.01 0.00 0.00 3.07
5034 6792 7.448748 ACCTGTACCAAATGATTTGTTACTC 57.551 36.000 21.00 7.59 38.75 2.59
6064 7867 4.616181 AGTTCGGTTGAGACAACTTTTG 57.384 40.909 13.05 3.57 0.00 2.44
6081 7884 6.071952 TCCATGCATTAGTTTCCAGAAAGTTC 60.072 38.462 0.00 0.00 35.70 3.01
6190 7994 5.529430 TGTAACTTTGTAATATGGGGATGCG 59.471 40.000 0.00 0.00 0.00 4.73
6437 8241 1.541588 GCCGCCTGAGACAGAAATTTT 59.458 47.619 0.00 0.00 32.44 1.82
6482 8286 4.222114 GCGGATTTCTTTGACTTGTTCTG 58.778 43.478 0.00 0.00 0.00 3.02
6511 8315 1.000506 GTTGAGACCGAGGTTGTGCTA 59.999 52.381 0.00 0.00 0.00 3.49
6621 8425 1.372582 TGCGAGATCAATGTTCCTGC 58.627 50.000 0.00 0.25 0.00 4.85
6740 8544 3.207044 AGTGTCCCTGTAATTCTCCCT 57.793 47.619 0.00 0.00 0.00 4.20
6876 8680 5.191722 TGGTTTAGATGATAGTTCCAGCCTT 59.808 40.000 0.00 0.00 0.00 4.35
6895 8699 3.423749 TCACATCATCACTGCATGGTTT 58.576 40.909 0.00 0.00 0.00 3.27
6921 8725 0.310543 GCATGTTCACGGACAAAGCA 59.689 50.000 0.00 0.00 35.79 3.91
6942 8746 9.606631 GATCTTACTTCCAGTACTCAATTCAAT 57.393 33.333 0.00 0.00 28.93 2.57
6943 8747 8.041323 GGATCTTACTTCCAGTACTCAATTCAA 58.959 37.037 0.00 0.00 33.21 2.69
6944 8748 7.180229 TGGATCTTACTTCCAGTACTCAATTCA 59.820 37.037 0.00 0.00 38.35 2.57
6945 8749 7.556844 TGGATCTTACTTCCAGTACTCAATTC 58.443 38.462 0.00 0.00 38.35 2.17
6946 8750 7.496346 TGGATCTTACTTCCAGTACTCAATT 57.504 36.000 0.00 0.00 38.35 2.32
6991 8803 2.874086 CTGTTCATGTCTGCACTTCACA 59.126 45.455 0.00 0.00 0.00 3.58
6994 8806 4.377841 GCTAACTGTTCATGTCTGCACTTC 60.378 45.833 0.00 0.00 0.00 3.01
7095 8907 6.416161 CGACATCATAACAGTCATGACACTAG 59.584 42.308 27.02 15.56 35.33 2.57
7100 8912 4.205181 CGTCGACATCATAACAGTCATGAC 59.795 45.833 18.47 18.47 35.33 3.06
7114 8926 2.658224 CGTTTCAAACACCGTCGACATC 60.658 50.000 17.16 0.00 0.00 3.06
7125 8937 2.993937 AGACCTGAACCGTTTCAAACA 58.006 42.857 0.22 0.00 41.34 2.83
7364 9176 5.007332 CAGTACTTTAAACACAAGTTCGGCT 59.993 40.000 0.00 0.00 36.84 5.52
7507 9319 4.020307 TGCATACAGACTCAGATTTGGACA 60.020 41.667 0.00 0.00 0.00 4.02
7617 9594 5.435291 TCCAAAACTGTCCGGTTTAAACTA 58.565 37.500 17.50 1.87 38.30 2.24
7661 9638 7.658167 TCACGTCCAAAATACTAGTCAAATTCA 59.342 33.333 0.00 0.00 0.00 2.57
7706 9683 2.030562 CGGCTGGACTTTCCGTGT 59.969 61.111 0.00 0.00 40.17 4.49
7712 9689 0.912486 ATAAGAGGCGGCTGGACTTT 59.088 50.000 19.63 5.40 29.96 2.66
7750 9727 3.119990 CGATTGGTGTTGTTTAATCGGCT 60.120 43.478 9.58 0.00 44.70 5.52
7833 9811 6.455647 TGAAGAACTAGCGAAGAATGAGAAA 58.544 36.000 0.00 0.00 0.00 2.52
7839 9817 4.569966 CAGCATGAAGAACTAGCGAAGAAT 59.430 41.667 0.00 0.00 39.69 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.