Multiple sequence alignment - TraesCS1A01G243400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G243400 chr1A 100.000 5183 0 0 1 5183 431785172 431779990 0.000000e+00 9572.0
1 TraesCS1A01G243400 chr1A 87.838 74 6 2 4373 4445 58289637 58289708 3.330000e-12 84.2
2 TraesCS1A01G243400 chr1B 95.382 3551 135 18 712 4245 449395457 449391919 0.000000e+00 5622.0
3 TraesCS1A01G243400 chr1B 97.341 677 12 2 4507 5183 449391604 449390934 0.000000e+00 1146.0
4 TraesCS1A01G243400 chr1D 95.214 3531 141 14 731 4244 333504103 333500584 0.000000e+00 5559.0
5 TraesCS1A01G243400 chr1D 92.451 914 21 15 4299 5183 333500588 333499694 0.000000e+00 1262.0
6 TraesCS1A01G243400 chr1D 91.935 62 5 0 460 521 333504231 333504170 2.570000e-13 87.9
7 TraesCS1A01G243400 chr2A 95.548 292 13 0 174 465 22287903 22288194 7.860000e-128 468.0
8 TraesCS1A01G243400 chr2A 95.370 216 9 1 172 386 685633116 685633331 4.970000e-90 342.0
9 TraesCS1A01G243400 chr2A 97.701 87 2 0 379 465 685633598 685633684 3.230000e-32 150.0
10 TraesCS1A01G243400 chr4A 95.255 274 13 0 175 448 601150615 601150888 7.970000e-118 435.0
11 TraesCS1A01G243400 chr4A 92.500 40 3 0 4381 4420 651368035 651368074 2.020000e-04 58.4
12 TraesCS1A01G243400 chr5D 93.007 286 19 1 177 461 301002935 301003220 2.890000e-112 416.0
13 TraesCS1A01G243400 chr5D 91.241 274 23 1 180 452 55926841 55926568 6.340000e-99 372.0
14 TraesCS1A01G243400 chr3A 92.203 295 16 3 165 459 60207435 60207722 1.340000e-110 411.0
15 TraesCS1A01G243400 chr7D 92.308 286 21 1 177 461 583082892 583083177 6.250000e-109 405.0
16 TraesCS1A01G243400 chr7D 92.500 40 3 0 4381 4420 43214868 43214907 2.020000e-04 58.4
17 TraesCS1A01G243400 chr3D 91.781 292 22 2 175 464 595000166 595000457 6.250000e-109 405.0
18 TraesCS1A01G243400 chr3D 91.453 117 9 1 5028 5143 191315594 191315710 5.370000e-35 159.0
19 TraesCS1A01G243400 chr3D 92.500 40 3 0 4381 4420 107075578 107075617 2.020000e-04 58.4
20 TraesCS1A01G243400 chr2D 91.034 290 25 1 175 463 636043154 636042865 1.750000e-104 390.0
21 TraesCS1A01G243400 chr2D 100.000 35 0 0 4381 4415 372324276 372324242 1.200000e-06 65.8
22 TraesCS1A01G243400 chr7B 84.722 72 8 3 4381 4452 297400584 297400652 9.310000e-08 69.4
23 TraesCS1A01G243400 chr7A 84.932 73 6 5 4381 4452 391906645 391906577 9.310000e-08 69.4
24 TraesCS1A01G243400 chr6B 93.182 44 3 0 4381 4424 18737791 18737748 1.200000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G243400 chr1A 431779990 431785172 5182 True 9572.000000 9572 100.0000 1 5183 1 chr1A.!!$R1 5182
1 TraesCS1A01G243400 chr1B 449390934 449395457 4523 True 3384.000000 5622 96.3615 712 5183 2 chr1B.!!$R1 4471
2 TraesCS1A01G243400 chr1D 333499694 333504231 4537 True 2302.966667 5559 93.2000 460 5183 3 chr1D.!!$R1 4723
3 TraesCS1A01G243400 chr2A 685633116 685633684 568 False 246.000000 342 96.5355 172 465 2 chr2A.!!$F2 293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 445 0.030908 AGCGTCTATACAAGCGGCTC 59.969 55.0 1.45 0.0 34.34 4.70 F
1373 1392 0.037326 TCCTCTAACAACAGCGGCAG 60.037 55.0 1.45 0.0 0.00 4.85 F
1823 1842 0.813210 GAGGAGGAATTCAGGCGCAG 60.813 60.0 10.83 0.0 0.00 5.18 F
2250 2269 0.323178 AGGACGAGCGGAAGAACCTA 60.323 55.0 0.00 0.0 36.31 3.08 F
3402 3421 1.084370 GCTTCGACTTCATGGACCCG 61.084 60.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 1826 0.392998 TTCCTGCGCCTGAATTCCTC 60.393 55.000 4.18 0.0 0.00 3.71 R
2239 2258 1.135286 GTACACGGGTAGGTTCTTCCG 60.135 57.143 0.00 0.0 46.95 4.30 R
3603 3622 1.804326 CCGGTAGAAGACGGCGTTG 60.804 63.158 16.19 0.0 43.96 4.10 R
4137 4156 0.034896 TGTCCTTGCCCGTCTTCTTC 59.965 55.000 0.00 0.0 0.00 2.87 R
4273 4329 0.033504 AGTGCGTCGTCACTGGATTT 59.966 50.000 17.59 0.0 44.88 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.917476 TGAAGGGATGCCAGGAGA 57.083 55.556 5.86 0.00 0.00 3.71
18 19 3.347158 TGAAGGGATGCCAGGAGAT 57.653 52.632 5.86 0.00 0.00 2.75
19 20 1.600058 TGAAGGGATGCCAGGAGATT 58.400 50.000 5.86 0.00 0.00 2.40
20 21 1.925255 TGAAGGGATGCCAGGAGATTT 59.075 47.619 5.86 0.00 0.00 2.17
21 22 2.312741 TGAAGGGATGCCAGGAGATTTT 59.687 45.455 5.86 0.00 0.00 1.82
22 23 2.744352 AGGGATGCCAGGAGATTTTC 57.256 50.000 5.86 0.00 0.00 2.29
23 24 2.212420 AGGGATGCCAGGAGATTTTCT 58.788 47.619 5.86 0.00 0.00 2.52
24 25 2.584498 AGGGATGCCAGGAGATTTTCTT 59.416 45.455 5.86 0.00 0.00 2.52
25 26 3.012161 AGGGATGCCAGGAGATTTTCTTT 59.988 43.478 5.86 0.00 0.00 2.52
26 27 3.131755 GGGATGCCAGGAGATTTTCTTTG 59.868 47.826 0.00 0.00 0.00 2.77
27 28 3.766051 GGATGCCAGGAGATTTTCTTTGT 59.234 43.478 0.00 0.00 0.00 2.83
28 29 4.221482 GGATGCCAGGAGATTTTCTTTGTT 59.779 41.667 0.00 0.00 0.00 2.83
29 30 4.589216 TGCCAGGAGATTTTCTTTGTTG 57.411 40.909 0.00 0.00 0.00 3.33
30 31 4.214310 TGCCAGGAGATTTTCTTTGTTGA 58.786 39.130 0.00 0.00 0.00 3.18
31 32 4.834496 TGCCAGGAGATTTTCTTTGTTGAT 59.166 37.500 0.00 0.00 0.00 2.57
32 33 5.166398 GCCAGGAGATTTTCTTTGTTGATG 58.834 41.667 0.00 0.00 0.00 3.07
33 34 5.279156 GCCAGGAGATTTTCTTTGTTGATGT 60.279 40.000 0.00 0.00 0.00 3.06
34 35 6.154445 CCAGGAGATTTTCTTTGTTGATGTG 58.846 40.000 0.00 0.00 0.00 3.21
35 36 6.239120 CCAGGAGATTTTCTTTGTTGATGTGT 60.239 38.462 0.00 0.00 0.00 3.72
36 37 7.205297 CAGGAGATTTTCTTTGTTGATGTGTT 58.795 34.615 0.00 0.00 0.00 3.32
37 38 7.707893 CAGGAGATTTTCTTTGTTGATGTGTTT 59.292 33.333 0.00 0.00 0.00 2.83
38 39 7.922811 AGGAGATTTTCTTTGTTGATGTGTTTC 59.077 33.333 0.00 0.00 0.00 2.78
39 40 7.706179 GGAGATTTTCTTTGTTGATGTGTTTCA 59.294 33.333 0.00 0.00 0.00 2.69
40 41 9.086336 GAGATTTTCTTTGTTGATGTGTTTCAA 57.914 29.630 0.00 0.00 33.32 2.69
41 42 9.434420 AGATTTTCTTTGTTGATGTGTTTCAAA 57.566 25.926 0.00 0.00 37.36 2.69
65 66 6.730960 AAAATGTTAAATAAGCCGAGTCGA 57.269 33.333 15.64 0.00 0.00 4.20
66 67 5.968387 AATGTTAAATAAGCCGAGTCGAG 57.032 39.130 15.64 5.33 0.00 4.04
67 68 3.777478 TGTTAAATAAGCCGAGTCGAGG 58.223 45.455 15.64 0.00 0.00 4.63
94 95 2.126228 CGTTGCGCGGAAGGACTA 60.126 61.111 25.84 0.00 36.85 2.59
95 96 2.442188 CGTTGCGCGGAAGGACTAC 61.442 63.158 25.84 7.51 36.85 2.73
96 97 2.098831 GTTGCGCGGAAGGACTACC 61.099 63.158 15.16 0.00 0.00 3.18
97 98 3.305177 TTGCGCGGAAGGACTACCC 62.305 63.158 9.68 0.00 36.73 3.69
98 99 3.766691 GCGCGGAAGGACTACCCA 61.767 66.667 8.83 0.00 37.41 4.51
99 100 2.183555 CGCGGAAGGACTACCCAC 59.816 66.667 0.00 0.00 37.41 4.61
100 101 2.582978 GCGGAAGGACTACCCACC 59.417 66.667 0.00 0.00 37.41 4.61
101 102 3.027675 GCGGAAGGACTACCCACCC 62.028 68.421 0.00 0.00 37.41 4.61
102 103 2.364780 CGGAAGGACTACCCACCCC 61.365 68.421 0.00 0.00 37.41 4.95
103 104 1.082392 GGAAGGACTACCCACCCCT 59.918 63.158 0.00 0.00 37.41 4.79
104 105 0.340908 GGAAGGACTACCCACCCCTA 59.659 60.000 0.00 0.00 37.41 3.53
105 106 1.691801 GGAAGGACTACCCACCCCTAG 60.692 61.905 0.00 0.00 37.41 3.02
106 107 0.342313 AAGGACTACCCACCCCTAGG 59.658 60.000 0.06 0.06 37.41 3.02
107 108 1.765255 GGACTACCCACCCCTAGGC 60.765 68.421 2.05 0.00 36.11 3.93
108 109 1.765255 GACTACCCACCCCTAGGCC 60.765 68.421 2.05 0.00 36.11 5.19
109 110 2.371043 CTACCCACCCCTAGGCCA 59.629 66.667 5.01 0.00 36.11 5.36
110 111 1.307517 CTACCCACCCCTAGGCCAA 60.308 63.158 5.01 0.00 36.11 4.52
111 112 0.917333 CTACCCACCCCTAGGCCAAA 60.917 60.000 5.01 0.00 36.11 3.28
112 113 1.209523 TACCCACCCCTAGGCCAAAC 61.210 60.000 5.01 0.00 36.11 2.93
113 114 2.045340 CCACCCCTAGGCCAAACG 60.045 66.667 5.01 0.00 36.11 3.60
114 115 2.598787 CCACCCCTAGGCCAAACGA 61.599 63.158 5.01 0.00 36.11 3.85
115 116 1.376812 CACCCCTAGGCCAAACGAC 60.377 63.158 5.01 0.00 36.11 4.34
116 117 1.844289 ACCCCTAGGCCAAACGACA 60.844 57.895 5.01 0.00 36.11 4.35
117 118 1.376812 CCCCTAGGCCAAACGACAC 60.377 63.158 5.01 0.00 0.00 3.67
118 119 1.740296 CCCTAGGCCAAACGACACG 60.740 63.158 5.01 0.00 0.00 4.49
119 120 1.005394 CCTAGGCCAAACGACACGT 60.005 57.895 5.01 0.00 43.97 4.49
120 121 1.289109 CCTAGGCCAAACGACACGTG 61.289 60.000 15.48 15.48 39.99 4.49
121 122 0.599204 CTAGGCCAAACGACACGTGT 60.599 55.000 23.64 23.64 39.99 4.49
122 123 0.876777 TAGGCCAAACGACACGTGTG 60.877 55.000 28.82 19.89 43.79 3.82
123 124 2.174969 GGCCAAACGACACGTGTGA 61.175 57.895 28.82 0.00 46.69 3.58
124 125 1.707239 GGCCAAACGACACGTGTGAA 61.707 55.000 28.82 0.00 46.69 3.18
125 126 0.315869 GCCAAACGACACGTGTGAAG 60.316 55.000 28.82 18.83 46.69 3.02
126 127 1.282817 CCAAACGACACGTGTGAAGA 58.717 50.000 28.82 0.00 46.69 2.87
127 128 1.257936 CCAAACGACACGTGTGAAGAG 59.742 52.381 28.82 13.78 46.69 2.85
128 129 2.190161 CAAACGACACGTGTGAAGAGA 58.810 47.619 28.82 0.00 46.69 3.10
129 130 2.572191 AACGACACGTGTGAAGAGAA 57.428 45.000 28.82 0.00 39.99 2.87
130 131 2.572191 ACGACACGTGTGAAGAGAAA 57.428 45.000 28.82 0.00 39.18 2.52
131 132 2.460918 ACGACACGTGTGAAGAGAAAG 58.539 47.619 28.82 7.88 39.18 2.62
132 133 2.098607 ACGACACGTGTGAAGAGAAAGA 59.901 45.455 28.82 0.00 39.18 2.52
133 134 3.113322 CGACACGTGTGAAGAGAAAGAA 58.887 45.455 28.82 0.00 0.00 2.52
134 135 3.180584 CGACACGTGTGAAGAGAAAGAAG 59.819 47.826 28.82 0.00 0.00 2.85
135 136 4.113354 GACACGTGTGAAGAGAAAGAAGT 58.887 43.478 28.82 0.00 0.00 3.01
136 137 4.504858 ACACGTGTGAAGAGAAAGAAGTT 58.495 39.130 22.71 0.00 0.00 2.66
137 138 4.567159 ACACGTGTGAAGAGAAAGAAGTTC 59.433 41.667 22.71 0.00 36.38 3.01
138 139 4.025647 CACGTGTGAAGAGAAAGAAGTTCC 60.026 45.833 7.58 0.00 36.86 3.62
139 140 4.119862 CGTGTGAAGAGAAAGAAGTTCCA 58.880 43.478 0.00 0.00 36.86 3.53
140 141 4.570772 CGTGTGAAGAGAAAGAAGTTCCAA 59.429 41.667 0.00 0.00 36.86 3.53
141 142 5.502544 CGTGTGAAGAGAAAGAAGTTCCAAC 60.503 44.000 0.00 0.00 36.86 3.77
142 143 4.881850 TGTGAAGAGAAAGAAGTTCCAACC 59.118 41.667 0.00 0.00 36.86 3.77
143 144 4.881850 GTGAAGAGAAAGAAGTTCCAACCA 59.118 41.667 0.00 0.00 36.86 3.67
144 145 5.532779 GTGAAGAGAAAGAAGTTCCAACCAT 59.467 40.000 0.00 0.00 36.86 3.55
145 146 5.532406 TGAAGAGAAAGAAGTTCCAACCATG 59.468 40.000 0.00 0.00 36.86 3.66
146 147 3.823304 AGAGAAAGAAGTTCCAACCATGC 59.177 43.478 0.00 0.00 36.86 4.06
147 148 3.565307 AGAAAGAAGTTCCAACCATGCA 58.435 40.909 0.00 0.00 36.86 3.96
148 149 3.960102 AGAAAGAAGTTCCAACCATGCAA 59.040 39.130 0.00 0.00 36.86 4.08
149 150 4.038402 AGAAAGAAGTTCCAACCATGCAAG 59.962 41.667 0.00 0.00 36.86 4.01
150 151 1.615392 AGAAGTTCCAACCATGCAAGC 59.385 47.619 0.00 0.00 0.00 4.01
151 152 0.681175 AAGTTCCAACCATGCAAGCC 59.319 50.000 0.00 0.00 0.00 4.35
152 153 0.178953 AGTTCCAACCATGCAAGCCT 60.179 50.000 0.00 0.00 0.00 4.58
153 154 0.037975 GTTCCAACCATGCAAGCCTG 60.038 55.000 0.00 0.00 0.00 4.85
154 155 0.469705 TTCCAACCATGCAAGCCTGT 60.470 50.000 0.00 0.00 0.00 4.00
155 156 0.895100 TCCAACCATGCAAGCCTGTC 60.895 55.000 0.00 0.00 0.00 3.51
156 157 1.588082 CAACCATGCAAGCCTGTCC 59.412 57.895 0.00 0.00 0.00 4.02
157 158 0.896940 CAACCATGCAAGCCTGTCCT 60.897 55.000 0.00 0.00 0.00 3.85
158 159 0.698238 AACCATGCAAGCCTGTCCTA 59.302 50.000 0.00 0.00 0.00 2.94
159 160 0.921896 ACCATGCAAGCCTGTCCTAT 59.078 50.000 0.00 0.00 0.00 2.57
160 161 1.285962 ACCATGCAAGCCTGTCCTATT 59.714 47.619 0.00 0.00 0.00 1.73
161 162 1.679680 CCATGCAAGCCTGTCCTATTG 59.320 52.381 0.00 0.00 0.00 1.90
162 163 2.646930 CATGCAAGCCTGTCCTATTGA 58.353 47.619 0.00 0.00 0.00 2.57
163 164 2.113860 TGCAAGCCTGTCCTATTGAC 57.886 50.000 0.00 0.00 44.72 3.18
164 165 1.340017 TGCAAGCCTGTCCTATTGACC 60.340 52.381 0.00 0.00 43.78 4.02
165 166 1.340017 GCAAGCCTGTCCTATTGACCA 60.340 52.381 0.00 0.00 43.78 4.02
166 167 2.636830 CAAGCCTGTCCTATTGACCAG 58.363 52.381 0.00 0.00 43.78 4.00
167 168 2.237143 CAAGCCTGTCCTATTGACCAGA 59.763 50.000 0.00 0.00 43.78 3.86
168 169 2.114616 AGCCTGTCCTATTGACCAGAG 58.885 52.381 0.00 0.00 43.78 3.35
169 170 1.834263 GCCTGTCCTATTGACCAGAGT 59.166 52.381 0.00 0.00 43.78 3.24
170 171 2.159028 GCCTGTCCTATTGACCAGAGTC 60.159 54.545 0.00 0.00 43.78 3.36
237 238 4.448210 GTCTAAATCCCGGTCAATTAGCA 58.552 43.478 0.00 0.00 0.00 3.49
238 239 4.879545 GTCTAAATCCCGGTCAATTAGCAA 59.120 41.667 0.00 0.00 0.00 3.91
272 273 3.832237 CTGGTGCCAGGTGAAGCGT 62.832 63.158 10.28 0.00 40.17 5.07
273 274 3.050275 GGTGCCAGGTGAAGCGTC 61.050 66.667 0.00 0.00 0.00 5.19
274 275 3.414700 GTGCCAGGTGAAGCGTCG 61.415 66.667 0.00 0.00 0.00 5.12
275 276 4.680237 TGCCAGGTGAAGCGTCGG 62.680 66.667 0.00 0.00 0.00 4.79
287 288 2.425124 CGTCGGCGCAAAAGTGTG 60.425 61.111 10.83 0.00 38.35 3.82
294 295 2.991728 CGCAAAAGTGTGCATCGAG 58.008 52.632 0.00 0.00 45.19 4.04
295 296 1.061799 CGCAAAAGTGTGCATCGAGC 61.062 55.000 0.00 0.00 45.19 5.03
311 312 2.985847 GCGCCAGGCACTTTTCCT 60.986 61.111 13.30 0.00 42.87 3.36
312 313 2.564721 GCGCCAGGCACTTTTCCTT 61.565 57.895 13.30 0.00 42.87 3.36
313 314 1.581447 CGCCAGGCACTTTTCCTTC 59.419 57.895 13.30 0.00 34.60 3.46
314 315 1.866853 CGCCAGGCACTTTTCCTTCC 61.867 60.000 13.30 0.00 34.60 3.46
315 316 1.536073 GCCAGGCACTTTTCCTTCCC 61.536 60.000 6.55 0.00 34.60 3.97
316 317 1.244019 CCAGGCACTTTTCCTTCCCG 61.244 60.000 0.00 0.00 34.60 5.14
317 318 1.603739 AGGCACTTTTCCTTCCCGC 60.604 57.895 0.00 0.00 27.25 6.13
318 319 1.603739 GGCACTTTTCCTTCCCGCT 60.604 57.895 0.00 0.00 0.00 5.52
319 320 1.581447 GCACTTTTCCTTCCCGCTG 59.419 57.895 0.00 0.00 0.00 5.18
320 321 1.172812 GCACTTTTCCTTCCCGCTGT 61.173 55.000 0.00 0.00 0.00 4.40
321 322 1.880646 GCACTTTTCCTTCCCGCTGTA 60.881 52.381 0.00 0.00 0.00 2.74
322 323 2.500229 CACTTTTCCTTCCCGCTGTAA 58.500 47.619 0.00 0.00 0.00 2.41
323 324 2.484264 CACTTTTCCTTCCCGCTGTAAG 59.516 50.000 0.00 0.00 0.00 2.34
334 335 2.821366 CTGTAAGCGCCCAGGCTG 60.821 66.667 7.75 7.75 43.93 4.85
335 336 3.612247 CTGTAAGCGCCCAGGCTGT 62.612 63.158 14.43 0.00 43.93 4.40
336 337 2.359975 GTAAGCGCCCAGGCTGTT 60.360 61.111 14.43 3.06 43.93 3.16
337 338 1.971695 GTAAGCGCCCAGGCTGTTT 60.972 57.895 14.43 7.36 43.93 2.83
338 339 1.971167 TAAGCGCCCAGGCTGTTTG 60.971 57.895 14.43 3.24 43.93 2.93
339 340 2.404566 TAAGCGCCCAGGCTGTTTGA 62.405 55.000 14.43 0.00 43.93 2.69
340 341 3.064324 GCGCCCAGGCTGTTTGAT 61.064 61.111 14.43 0.00 39.32 2.57
341 342 2.639327 GCGCCCAGGCTGTTTGATT 61.639 57.895 14.43 0.00 39.32 2.57
342 343 1.312371 GCGCCCAGGCTGTTTGATTA 61.312 55.000 14.43 0.00 39.32 1.75
343 344 0.734889 CGCCCAGGCTGTTTGATTAG 59.265 55.000 14.43 0.00 39.32 1.73
344 345 0.457443 GCCCAGGCTGTTTGATTAGC 59.543 55.000 14.43 0.00 39.17 3.09
351 352 3.427161 GCTGTTTGATTAGCCCATGTC 57.573 47.619 0.00 0.00 33.89 3.06
352 353 2.754552 GCTGTTTGATTAGCCCATGTCA 59.245 45.455 0.00 0.00 33.89 3.58
353 354 3.382546 GCTGTTTGATTAGCCCATGTCAT 59.617 43.478 0.00 0.00 33.89 3.06
354 355 4.142093 GCTGTTTGATTAGCCCATGTCATT 60.142 41.667 0.00 0.00 33.89 2.57
355 356 5.067674 GCTGTTTGATTAGCCCATGTCATTA 59.932 40.000 0.00 0.00 33.89 1.90
356 357 6.698008 TGTTTGATTAGCCCATGTCATTAG 57.302 37.500 0.00 0.00 0.00 1.73
357 358 5.067674 TGTTTGATTAGCCCATGTCATTAGC 59.932 40.000 0.00 0.00 0.00 3.09
358 359 4.436113 TGATTAGCCCATGTCATTAGCA 57.564 40.909 6.61 0.00 0.00 3.49
359 360 4.989277 TGATTAGCCCATGTCATTAGCAT 58.011 39.130 6.61 0.00 0.00 3.79
360 361 5.005740 TGATTAGCCCATGTCATTAGCATC 58.994 41.667 6.61 3.19 0.00 3.91
361 362 4.712051 TTAGCCCATGTCATTAGCATCT 57.288 40.909 6.61 0.00 0.00 2.90
362 363 2.860009 AGCCCATGTCATTAGCATCTG 58.140 47.619 6.61 0.00 0.00 2.90
363 364 1.268899 GCCCATGTCATTAGCATCTGC 59.731 52.381 0.00 0.00 42.49 4.26
364 365 1.884579 CCCATGTCATTAGCATCTGCC 59.115 52.381 0.00 0.00 43.38 4.85
365 366 1.534163 CCATGTCATTAGCATCTGCCG 59.466 52.381 0.00 0.00 43.38 5.69
366 367 2.216046 CATGTCATTAGCATCTGCCGT 58.784 47.619 0.00 0.00 43.38 5.68
367 368 2.401583 TGTCATTAGCATCTGCCGTT 57.598 45.000 0.00 0.00 43.38 4.44
368 369 2.009051 TGTCATTAGCATCTGCCGTTG 58.991 47.619 0.00 0.00 43.38 4.10
369 370 2.009774 GTCATTAGCATCTGCCGTTGT 58.990 47.619 0.00 0.00 43.38 3.32
370 371 3.194861 GTCATTAGCATCTGCCGTTGTA 58.805 45.455 0.00 0.00 43.38 2.41
371 372 3.621268 GTCATTAGCATCTGCCGTTGTAA 59.379 43.478 0.00 0.00 43.38 2.41
372 373 3.871006 TCATTAGCATCTGCCGTTGTAAG 59.129 43.478 0.00 0.00 43.38 2.34
373 374 3.328382 TTAGCATCTGCCGTTGTAAGT 57.672 42.857 0.00 0.00 43.38 2.24
374 375 1.726853 AGCATCTGCCGTTGTAAGTC 58.273 50.000 0.00 0.00 43.38 3.01
375 376 0.727398 GCATCTGCCGTTGTAAGTCC 59.273 55.000 0.00 0.00 34.31 3.85
376 377 0.999406 CATCTGCCGTTGTAAGTCCG 59.001 55.000 0.00 0.00 0.00 4.79
377 378 0.108329 ATCTGCCGTTGTAAGTCCGG 60.108 55.000 0.00 0.00 44.46 5.14
378 379 1.740296 CTGCCGTTGTAAGTCCGGG 60.740 63.158 0.00 0.00 41.96 5.73
379 380 3.122971 GCCGTTGTAAGTCCGGGC 61.123 66.667 0.00 0.00 41.96 6.13
380 381 2.812178 CCGTTGTAAGTCCGGGCG 60.812 66.667 0.00 0.00 38.09 6.13
381 382 3.484547 CGTTGTAAGTCCGGGCGC 61.485 66.667 0.00 0.00 0.00 6.53
382 383 2.047560 GTTGTAAGTCCGGGCGCT 60.048 61.111 7.64 0.00 0.00 5.92
383 384 1.670083 GTTGTAAGTCCGGGCGCTT 60.670 57.895 7.64 6.25 0.00 4.68
384 385 0.390209 GTTGTAAGTCCGGGCGCTTA 60.390 55.000 7.64 5.21 0.00 3.09
385 386 0.108520 TTGTAAGTCCGGGCGCTTAG 60.109 55.000 7.64 0.00 0.00 2.18
386 387 0.966875 TGTAAGTCCGGGCGCTTAGA 60.967 55.000 7.64 3.87 0.00 2.10
387 388 0.388294 GTAAGTCCGGGCGCTTAGAT 59.612 55.000 7.64 0.00 0.00 1.98
388 389 0.387929 TAAGTCCGGGCGCTTAGATG 59.612 55.000 7.64 0.00 0.00 2.90
389 390 1.327690 AAGTCCGGGCGCTTAGATGA 61.328 55.000 7.64 0.00 0.00 2.92
390 391 1.591863 GTCCGGGCGCTTAGATGAC 60.592 63.158 7.64 2.35 0.00 3.06
391 392 1.756950 TCCGGGCGCTTAGATGACT 60.757 57.895 7.64 0.00 0.00 3.41
392 393 1.144057 CCGGGCGCTTAGATGACTT 59.856 57.895 7.64 0.00 0.00 3.01
393 394 0.462047 CCGGGCGCTTAGATGACTTT 60.462 55.000 7.64 0.00 0.00 2.66
394 395 1.369625 CGGGCGCTTAGATGACTTTT 58.630 50.000 7.64 0.00 0.00 2.27
395 396 1.737793 CGGGCGCTTAGATGACTTTTT 59.262 47.619 7.64 0.00 0.00 1.94
396 397 2.933906 CGGGCGCTTAGATGACTTTTTA 59.066 45.455 7.64 0.00 0.00 1.52
397 398 3.372822 CGGGCGCTTAGATGACTTTTTAA 59.627 43.478 7.64 0.00 0.00 1.52
398 399 4.035208 CGGGCGCTTAGATGACTTTTTAAT 59.965 41.667 7.64 0.00 0.00 1.40
399 400 5.448632 CGGGCGCTTAGATGACTTTTTAATT 60.449 40.000 7.64 0.00 0.00 1.40
400 401 6.330278 GGGCGCTTAGATGACTTTTTAATTT 58.670 36.000 7.64 0.00 0.00 1.82
401 402 6.811665 GGGCGCTTAGATGACTTTTTAATTTT 59.188 34.615 7.64 0.00 0.00 1.82
402 403 7.330946 GGGCGCTTAGATGACTTTTTAATTTTT 59.669 33.333 7.64 0.00 0.00 1.94
403 404 9.349145 GGCGCTTAGATGACTTTTTAATTTTTA 57.651 29.630 7.64 0.00 0.00 1.52
430 431 9.788960 ATCTTTAATTTTTCCTTCATTAGCGTC 57.211 29.630 0.00 0.00 0.00 5.19
431 432 9.010029 TCTTTAATTTTTCCTTCATTAGCGTCT 57.990 29.630 0.00 0.00 0.00 4.18
436 437 8.958119 ATTTTTCCTTCATTAGCGTCTATACA 57.042 30.769 0.00 0.00 0.00 2.29
437 438 8.780846 TTTTTCCTTCATTAGCGTCTATACAA 57.219 30.769 0.00 0.00 0.00 2.41
438 439 8.420374 TTTTCCTTCATTAGCGTCTATACAAG 57.580 34.615 0.00 0.00 0.00 3.16
439 440 5.529791 TCCTTCATTAGCGTCTATACAAGC 58.470 41.667 0.00 0.00 0.00 4.01
440 441 4.383052 CCTTCATTAGCGTCTATACAAGCG 59.617 45.833 0.00 0.00 34.34 4.68
441 442 3.897325 TCATTAGCGTCTATACAAGCGG 58.103 45.455 0.00 0.00 34.34 5.52
442 443 2.129823 TTAGCGTCTATACAAGCGGC 57.870 50.000 0.00 0.00 34.34 6.53
443 444 1.315690 TAGCGTCTATACAAGCGGCT 58.684 50.000 0.00 0.00 34.34 5.52
444 445 0.030908 AGCGTCTATACAAGCGGCTC 59.969 55.000 1.45 0.00 34.34 4.70
445 446 0.940047 GCGTCTATACAAGCGGCTCC 60.940 60.000 1.45 0.00 0.00 4.70
446 447 0.318784 CGTCTATACAAGCGGCTCCC 60.319 60.000 1.45 0.00 0.00 4.30
447 448 0.750850 GTCTATACAAGCGGCTCCCA 59.249 55.000 1.45 0.00 0.00 4.37
448 449 1.344763 GTCTATACAAGCGGCTCCCAT 59.655 52.381 1.45 0.00 0.00 4.00
449 450 2.047061 TCTATACAAGCGGCTCCCATT 58.953 47.619 1.45 0.00 0.00 3.16
450 451 2.146342 CTATACAAGCGGCTCCCATTG 58.854 52.381 1.45 0.00 0.00 2.82
451 452 0.466189 ATACAAGCGGCTCCCATTGG 60.466 55.000 1.45 0.00 0.00 3.16
452 453 1.558167 TACAAGCGGCTCCCATTGGA 61.558 55.000 1.45 0.00 38.75 3.53
490 491 4.200838 TCAATTCATGTCGGTCAAGCTA 57.799 40.909 0.00 0.00 0.00 3.32
505 506 5.591643 TCAAGCTATTGTTTCTTGACGAC 57.408 39.130 0.00 0.00 40.63 4.34
521 522 5.142061 TGACGACCAAGAAAGCTAATGTA 57.858 39.130 0.00 0.00 0.00 2.29
522 523 4.927425 TGACGACCAAGAAAGCTAATGTAC 59.073 41.667 0.00 0.00 0.00 2.90
523 524 4.890088 ACGACCAAGAAAGCTAATGTACA 58.110 39.130 0.00 0.00 0.00 2.90
524 525 5.302360 ACGACCAAGAAAGCTAATGTACAA 58.698 37.500 0.00 0.00 0.00 2.41
525 526 5.178809 ACGACCAAGAAAGCTAATGTACAAC 59.821 40.000 0.00 0.00 0.00 3.32
526 527 5.408604 CGACCAAGAAAGCTAATGTACAACT 59.591 40.000 0.00 0.00 0.00 3.16
527 528 6.401153 CGACCAAGAAAGCTAATGTACAACTC 60.401 42.308 0.00 0.00 0.00 3.01
528 529 5.408604 ACCAAGAAAGCTAATGTACAACTCG 59.591 40.000 0.00 0.00 0.00 4.18
529 530 5.408604 CCAAGAAAGCTAATGTACAACTCGT 59.591 40.000 0.00 0.00 0.00 4.18
530 531 6.073222 CCAAGAAAGCTAATGTACAACTCGTT 60.073 38.462 0.00 0.00 0.00 3.85
531 532 7.117236 CCAAGAAAGCTAATGTACAACTCGTTA 59.883 37.037 0.00 0.00 0.00 3.18
532 533 7.578169 AGAAAGCTAATGTACAACTCGTTAC 57.422 36.000 0.00 0.00 0.00 2.50
533 534 7.149973 AGAAAGCTAATGTACAACTCGTTACA 58.850 34.615 0.00 0.00 0.00 2.41
534 535 7.654520 AGAAAGCTAATGTACAACTCGTTACAA 59.345 33.333 0.00 0.00 0.00 2.41
535 536 7.900782 AAGCTAATGTACAACTCGTTACAAT 57.099 32.000 0.00 0.00 0.00 2.71
536 537 7.900782 AGCTAATGTACAACTCGTTACAATT 57.099 32.000 0.00 0.00 0.00 2.32
537 538 8.991243 AGCTAATGTACAACTCGTTACAATTA 57.009 30.769 0.00 0.00 0.00 1.40
538 539 9.426837 AGCTAATGTACAACTCGTTACAATTAA 57.573 29.630 0.00 0.00 0.00 1.40
539 540 9.469239 GCTAATGTACAACTCGTTACAATTAAC 57.531 33.333 0.00 0.00 35.17 2.01
540 541 9.962759 CTAATGTACAACTCGTTACAATTAACC 57.037 33.333 0.00 0.00 35.07 2.85
541 542 7.966246 ATGTACAACTCGTTACAATTAACCA 57.034 32.000 0.00 0.00 35.07 3.67
542 543 7.410800 TGTACAACTCGTTACAATTAACCAG 57.589 36.000 0.00 0.00 35.07 4.00
543 544 7.208777 TGTACAACTCGTTACAATTAACCAGA 58.791 34.615 0.00 0.00 35.07 3.86
551 552 8.842358 TCGTTACAATTAACCAGAGAATTTCT 57.158 30.769 0.00 0.00 35.07 2.52
562 563 6.234177 ACCAGAGAATTTCTTCGAACTTGAT 58.766 36.000 0.00 0.00 36.45 2.57
564 565 6.369890 CCAGAGAATTTCTTCGAACTTGATCA 59.630 38.462 0.00 0.00 36.45 2.92
565 566 7.232994 CAGAGAATTTCTTCGAACTTGATCAC 58.767 38.462 0.00 0.00 36.45 3.06
566 567 7.117523 CAGAGAATTTCTTCGAACTTGATCACT 59.882 37.037 0.00 0.00 36.45 3.41
567 568 7.659390 AGAGAATTTCTTCGAACTTGATCACTT 59.341 33.333 0.00 0.00 36.45 3.16
568 569 7.579726 AGAATTTCTTCGAACTTGATCACTTG 58.420 34.615 0.00 0.00 36.45 3.16
569 570 7.442364 AGAATTTCTTCGAACTTGATCACTTGA 59.558 33.333 0.00 0.00 36.45 3.02
570 571 6.530913 TTTCTTCGAACTTGATCACTTGAG 57.469 37.500 0.00 0.00 0.00 3.02
571 572 3.990469 TCTTCGAACTTGATCACTTGAGC 59.010 43.478 0.00 0.00 0.00 4.26
572 573 2.688507 TCGAACTTGATCACTTGAGCC 58.311 47.619 0.00 0.00 0.00 4.70
573 574 1.734465 CGAACTTGATCACTTGAGCCC 59.266 52.381 0.00 0.00 0.00 5.19
574 575 1.734465 GAACTTGATCACTTGAGCCCG 59.266 52.381 0.00 0.00 0.00 6.13
575 576 0.976641 ACTTGATCACTTGAGCCCGA 59.023 50.000 0.00 0.00 0.00 5.14
576 577 1.347707 ACTTGATCACTTGAGCCCGAA 59.652 47.619 0.00 0.00 0.00 4.30
577 578 2.224523 ACTTGATCACTTGAGCCCGAAA 60.225 45.455 0.00 0.00 0.00 3.46
578 579 2.787473 TGATCACTTGAGCCCGAAAT 57.213 45.000 0.00 0.00 0.00 2.17
579 580 3.904800 TGATCACTTGAGCCCGAAATA 57.095 42.857 0.00 0.00 0.00 1.40
580 581 3.531538 TGATCACTTGAGCCCGAAATAC 58.468 45.455 0.00 0.00 0.00 1.89
581 582 3.197766 TGATCACTTGAGCCCGAAATACT 59.802 43.478 0.00 0.00 0.00 2.12
582 583 4.404394 TGATCACTTGAGCCCGAAATACTA 59.596 41.667 0.00 0.00 0.00 1.82
583 584 5.070446 TGATCACTTGAGCCCGAAATACTAT 59.930 40.000 0.00 0.00 0.00 2.12
606 607 2.942796 ATCGAGTCGGCCTGCAACA 61.943 57.895 13.54 0.00 0.00 3.33
620 621 4.329545 AACACCGCCGCCACTCAT 62.330 61.111 0.00 0.00 0.00 2.90
621 622 4.760047 ACACCGCCGCCACTCATC 62.760 66.667 0.00 0.00 0.00 2.92
628 629 4.776322 CGCCACTCATCCGGCCAA 62.776 66.667 2.24 0.00 46.04 4.52
629 630 2.361104 GCCACTCATCCGGCCAAA 60.361 61.111 2.24 0.00 42.82 3.28
630 631 1.754234 GCCACTCATCCGGCCAAAT 60.754 57.895 2.24 0.00 42.82 2.32
631 632 1.322538 GCCACTCATCCGGCCAAATT 61.323 55.000 2.24 0.00 42.82 1.82
632 633 0.457035 CCACTCATCCGGCCAAATTG 59.543 55.000 2.24 0.00 0.00 2.32
633 634 0.179129 CACTCATCCGGCCAAATTGC 60.179 55.000 2.24 0.00 0.00 3.56
640 641 2.178273 GGCCAAATTGCCGTCGAC 59.822 61.111 5.18 5.18 42.54 4.20
641 642 2.202298 GCCAAATTGCCGTCGACG 60.202 61.111 30.33 30.33 39.44 5.12
642 643 2.202298 CCAAATTGCCGTCGACGC 60.202 61.111 31.73 25.31 38.18 5.19
643 644 2.570581 CAAATTGCCGTCGACGCG 60.571 61.111 31.73 24.17 38.18 6.01
644 645 3.039588 AAATTGCCGTCGACGCGT 61.040 55.556 31.73 13.85 38.18 6.01
645 646 2.600475 AAATTGCCGTCGACGCGTT 61.600 52.632 31.73 20.21 38.18 4.84
646 647 2.488852 AAATTGCCGTCGACGCGTTC 62.489 55.000 31.73 19.07 38.18 3.95
647 648 4.927444 TTGCCGTCGACGCGTTCA 62.927 61.111 31.73 21.23 38.18 3.18
648 649 4.710695 TGCCGTCGACGCGTTCAT 62.711 61.111 31.73 0.00 38.18 2.57
649 650 3.898640 GCCGTCGACGCGTTCATC 61.899 66.667 31.73 10.12 38.18 2.92
650 651 2.202440 CCGTCGACGCGTTCATCT 60.202 61.111 31.73 0.00 38.18 2.90
651 652 2.215604 CCGTCGACGCGTTCATCTC 61.216 63.158 31.73 0.00 38.18 2.75
652 653 2.215604 CGTCGACGCGTTCATCTCC 61.216 63.158 26.59 0.00 0.00 3.71
653 654 1.136984 GTCGACGCGTTCATCTCCT 59.863 57.895 15.53 0.00 0.00 3.69
654 655 0.456312 GTCGACGCGTTCATCTCCTT 60.456 55.000 15.53 0.00 0.00 3.36
655 656 0.456142 TCGACGCGTTCATCTCCTTG 60.456 55.000 15.53 0.00 0.00 3.61
656 657 0.732880 CGACGCGTTCATCTCCTTGT 60.733 55.000 15.53 0.00 0.00 3.16
657 658 1.429463 GACGCGTTCATCTCCTTGTT 58.571 50.000 15.53 0.00 0.00 2.83
658 659 1.126846 GACGCGTTCATCTCCTTGTTG 59.873 52.381 15.53 0.00 0.00 3.33
659 660 1.270094 ACGCGTTCATCTCCTTGTTGA 60.270 47.619 5.58 0.00 0.00 3.18
660 661 1.798223 CGCGTTCATCTCCTTGTTGAA 59.202 47.619 0.00 0.00 33.45 2.69
661 662 2.416547 CGCGTTCATCTCCTTGTTGAAT 59.583 45.455 0.00 0.00 36.93 2.57
662 663 3.484229 CGCGTTCATCTCCTTGTTGAATC 60.484 47.826 0.00 0.00 36.93 2.52
663 664 3.484229 GCGTTCATCTCCTTGTTGAATCG 60.484 47.826 0.00 0.00 36.93 3.34
664 665 3.484229 CGTTCATCTCCTTGTTGAATCGC 60.484 47.826 0.00 0.00 36.93 4.58
665 666 3.616956 TCATCTCCTTGTTGAATCGCT 57.383 42.857 0.00 0.00 0.00 4.93
666 667 3.264947 TCATCTCCTTGTTGAATCGCTG 58.735 45.455 0.00 0.00 0.00 5.18
667 668 3.055891 TCATCTCCTTGTTGAATCGCTGA 60.056 43.478 0.00 0.00 0.00 4.26
668 669 3.616956 TCTCCTTGTTGAATCGCTGAT 57.383 42.857 0.00 0.00 0.00 2.90
669 670 3.264947 TCTCCTTGTTGAATCGCTGATG 58.735 45.455 0.00 0.00 0.00 3.07
670 671 1.739466 TCCTTGTTGAATCGCTGATGC 59.261 47.619 0.00 0.00 0.00 3.91
681 682 2.445274 GCTGATGCGAACTCAACGA 58.555 52.632 0.00 0.00 0.00 3.85
682 683 0.093705 GCTGATGCGAACTCAACGAC 59.906 55.000 0.00 0.00 0.00 4.34
683 684 1.702886 CTGATGCGAACTCAACGACT 58.297 50.000 0.00 0.00 0.00 4.18
684 685 1.651138 CTGATGCGAACTCAACGACTC 59.349 52.381 0.00 0.00 0.00 3.36
685 686 0.635731 GATGCGAACTCAACGACTCG 59.364 55.000 0.00 0.00 0.00 4.18
687 688 4.221873 CGAACTCAACGACTCGCA 57.778 55.556 0.00 0.00 0.00 5.10
688 689 1.767388 CGAACTCAACGACTCGCAC 59.233 57.895 0.00 0.00 0.00 5.34
689 690 1.767388 GAACTCAACGACTCGCACG 59.233 57.895 0.00 0.00 0.00 5.34
690 691 1.606350 GAACTCAACGACTCGCACGG 61.606 60.000 0.00 0.00 34.93 4.94
691 692 3.470567 CTCAACGACTCGCACGGC 61.471 66.667 0.00 0.00 34.93 5.68
727 728 1.031571 TGCCGGCCAGCAATAGAAAG 61.032 55.000 26.77 0.00 40.56 2.62
741 745 2.930826 AGAAAGAAACGAAGGGCTGA 57.069 45.000 0.00 0.00 0.00 4.26
748 752 3.131400 AGAAACGAAGGGCTGAGATCTAC 59.869 47.826 0.00 0.00 0.00 2.59
749 753 2.445682 ACGAAGGGCTGAGATCTACT 57.554 50.000 0.00 0.00 0.00 2.57
751 755 1.611491 CGAAGGGCTGAGATCTACTCC 59.389 57.143 0.00 0.00 44.34 3.85
752 756 2.672098 GAAGGGCTGAGATCTACTCCA 58.328 52.381 0.00 0.00 44.34 3.86
754 758 1.044611 GGGCTGAGATCTACTCCACC 58.955 60.000 0.00 0.00 44.34 4.61
756 760 0.671251 GCTGAGATCTACTCCACCCG 59.329 60.000 0.00 0.00 44.34 5.28
815 822 1.921346 TGGAACCGCCATACCCAGT 60.921 57.895 0.00 0.00 43.33 4.00
834 841 3.678072 CAGTTTCCGATCACGTACACAAT 59.322 43.478 0.00 0.00 37.88 2.71
835 842 4.860352 CAGTTTCCGATCACGTACACAATA 59.140 41.667 0.00 0.00 37.88 1.90
836 843 5.346551 CAGTTTCCGATCACGTACACAATAA 59.653 40.000 0.00 0.00 37.88 1.40
837 844 6.035650 CAGTTTCCGATCACGTACACAATAAT 59.964 38.462 0.00 0.00 37.88 1.28
842 849 7.654568 TCCGATCACGTACACAATAATAATCT 58.345 34.615 0.00 0.00 37.88 2.40
843 850 7.593644 TCCGATCACGTACACAATAATAATCTG 59.406 37.037 0.00 0.00 37.88 2.90
844 851 7.148804 CCGATCACGTACACAATAATAATCTGG 60.149 40.741 0.00 0.00 37.88 3.86
845 852 7.381408 CGATCACGTACACAATAATAATCTGGT 59.619 37.037 0.00 0.00 34.56 4.00
846 853 7.997107 TCACGTACACAATAATAATCTGGTC 57.003 36.000 0.00 0.00 0.00 4.02
848 855 7.704899 TCACGTACACAATAATAATCTGGTCAG 59.295 37.037 0.00 0.00 0.00 3.51
849 856 7.704899 CACGTACACAATAATAATCTGGTCAGA 59.295 37.037 2.93 2.93 42.37 3.27
850 857 8.255206 ACGTACACAATAATAATCTGGTCAGAA 58.745 33.333 4.67 0.00 41.36 3.02
864 871 6.720309 TCTGGTCAGAATAAACATCCATCAA 58.280 36.000 0.00 0.00 33.91 2.57
872 879 1.086696 AACATCCATCAACGGAAGCG 58.913 50.000 0.00 0.00 38.95 4.68
901 908 4.509737 GCCGCACGTCTACCCCTC 62.510 72.222 0.00 0.00 0.00 4.30
903 910 4.189188 CGCACGTCTACCCCTCCG 62.189 72.222 0.00 0.00 0.00 4.63
904 911 4.509737 GCACGTCTACCCCTCCGC 62.510 72.222 0.00 0.00 0.00 5.54
917 924 1.080705 CTCCGCTCGAAACCGACTT 60.081 57.895 1.88 0.00 32.06 3.01
918 925 1.071567 CTCCGCTCGAAACCGACTTC 61.072 60.000 1.88 0.00 32.06 3.01
925 932 1.396543 CGAAACCGACTTCGCTCTCG 61.397 60.000 6.02 0.00 41.46 4.04
1086 1099 2.347490 GAGGTCATGGTGGTGCGT 59.653 61.111 0.00 0.00 0.00 5.24
1323 1336 1.658717 CGATGAGGACGATGTCGCC 60.659 63.158 1.77 5.19 44.43 5.54
1324 1337 1.437573 GATGAGGACGATGTCGCCA 59.562 57.895 14.86 4.87 44.43 5.69
1364 1383 1.210931 CCGCGTCGTCCTCTAACAA 59.789 57.895 4.92 0.00 0.00 2.83
1367 1386 1.337821 GCGTCGTCCTCTAACAACAG 58.662 55.000 0.00 0.00 0.00 3.16
1369 1388 1.337821 GTCGTCCTCTAACAACAGCG 58.662 55.000 0.00 0.00 0.00 5.18
1373 1392 0.037326 TCCTCTAACAACAGCGGCAG 60.037 55.000 1.45 0.00 0.00 4.85
1438 1457 1.440938 CGAGGAGGAGGCGAGTGTAG 61.441 65.000 0.00 0.00 0.00 2.74
1516 1535 1.196012 CTCTGGTGGGGAGGAACTAC 58.804 60.000 0.00 0.00 41.55 2.73
1559 1578 2.202676 GAAGGCTCAGCTCGACCG 60.203 66.667 0.00 0.00 0.00 4.79
1807 1826 1.079127 ATGACCAACGCCGAAGAGG 60.079 57.895 0.00 0.00 44.97 3.69
1823 1842 0.813210 GAGGAGGAATTCAGGCGCAG 60.813 60.000 10.83 0.00 0.00 5.18
2006 2025 1.153667 GAGACGGCAAGAGGAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
2152 2171 1.151777 CGTCAAGTCAACGGTGCAGT 61.152 55.000 0.00 0.00 36.51 4.40
2239 2258 4.828925 GGGAGCTGCAGGACGAGC 62.829 72.222 17.12 0.00 35.28 5.03
2247 2266 2.095252 GCAGGACGAGCGGAAGAAC 61.095 63.158 0.00 0.00 0.00 3.01
2250 2269 0.323178 AGGACGAGCGGAAGAACCTA 60.323 55.000 0.00 0.00 36.31 3.08
2502 2521 1.207329 GTCGGCTACTCCATCAGGTTT 59.793 52.381 0.00 0.00 35.89 3.27
2661 2680 2.050350 CGTCCTCTTCGGCCTGGTA 61.050 63.158 0.00 0.00 0.00 3.25
2712 2731 2.960659 CTGCTCATCTCCAGCGCG 60.961 66.667 0.00 0.00 40.01 6.86
2813 2832 4.373116 CCACTACACCACGGCGCT 62.373 66.667 6.90 0.00 0.00 5.92
3288 3307 1.623811 ACGGAGTACAACTTCAGGCAT 59.376 47.619 0.00 0.00 41.94 4.40
3402 3421 1.084370 GCTTCGACTTCATGGACCCG 61.084 60.000 0.00 0.00 0.00 5.28
3713 3732 1.775344 CGCTGCTCAACGTGTACAG 59.225 57.895 0.00 0.00 0.00 2.74
3994 4013 4.996434 GCTCCGGGATGGCGGATG 62.996 72.222 0.00 0.00 37.80 3.51
4199 4218 4.181578 ACCTGAACCTCGACAATATTTCG 58.818 43.478 11.44 11.44 37.85 3.46
4205 4224 5.786264 ACCTCGACAATATTTCGACCTAT 57.214 39.130 14.57 0.00 40.51 2.57
4290 4346 1.588674 AAAAATCCAGTGACGACGCA 58.411 45.000 0.62 0.00 0.00 5.24
4291 4347 0.865769 AAAATCCAGTGACGACGCAC 59.134 50.000 12.53 12.53 39.05 5.34
4293 4349 0.885879 AATCCAGTGACGACGCACTA 59.114 50.000 19.56 9.78 46.80 2.74
4294 4350 0.170561 ATCCAGTGACGACGCACTAC 59.829 55.000 19.56 4.44 46.80 2.73
4295 4351 0.887836 TCCAGTGACGACGCACTACT 60.888 55.000 19.56 6.39 46.80 2.57
4296 4352 0.800631 CCAGTGACGACGCACTACTA 59.199 55.000 19.56 0.00 46.80 1.82
4297 4353 1.465354 CCAGTGACGACGCACTACTAC 60.465 57.143 19.56 0.39 46.80 2.73
4298 4354 1.196127 CAGTGACGACGCACTACTACA 59.804 52.381 19.56 0.00 46.80 2.74
4624 4874 1.619827 TGCCATGGCCTTCTTGAAAAG 59.380 47.619 33.44 0.00 42.75 2.27
5167 5417 3.487544 GCTGCTGTTGACGTCTTTTCTTT 60.488 43.478 17.92 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.600058 AATCTCCTGGCATCCCTTCA 58.400 50.000 0.00 0.00 0.00 3.02
2 3 2.584498 AGAAAATCTCCTGGCATCCCTT 59.416 45.455 0.00 0.00 0.00 3.95
4 5 2.744352 AGAAAATCTCCTGGCATCCC 57.256 50.000 0.00 0.00 0.00 3.85
5 6 3.766051 ACAAAGAAAATCTCCTGGCATCC 59.234 43.478 0.00 0.00 0.00 3.51
6 7 5.047802 TCAACAAAGAAAATCTCCTGGCATC 60.048 40.000 0.00 0.00 0.00 3.91
7 8 4.834496 TCAACAAAGAAAATCTCCTGGCAT 59.166 37.500 0.00 0.00 0.00 4.40
8 9 4.214310 TCAACAAAGAAAATCTCCTGGCA 58.786 39.130 0.00 0.00 0.00 4.92
9 10 4.853924 TCAACAAAGAAAATCTCCTGGC 57.146 40.909 0.00 0.00 0.00 4.85
10 11 6.154445 CACATCAACAAAGAAAATCTCCTGG 58.846 40.000 0.00 0.00 0.00 4.45
11 12 6.742109 ACACATCAACAAAGAAAATCTCCTG 58.258 36.000 0.00 0.00 0.00 3.86
12 13 6.966534 ACACATCAACAAAGAAAATCTCCT 57.033 33.333 0.00 0.00 0.00 3.69
13 14 7.706179 TGAAACACATCAACAAAGAAAATCTCC 59.294 33.333 0.00 0.00 0.00 3.71
14 15 8.633075 TGAAACACATCAACAAAGAAAATCTC 57.367 30.769 0.00 0.00 0.00 2.75
15 16 9.434420 TTTGAAACACATCAACAAAGAAAATCT 57.566 25.926 0.00 0.00 38.95 2.40
41 42 7.136289 TCGACTCGGCTTATTTAACATTTTT 57.864 32.000 0.00 0.00 0.00 1.94
42 43 6.183360 CCTCGACTCGGCTTATTTAACATTTT 60.183 38.462 0.00 0.00 0.00 1.82
43 44 5.293569 CCTCGACTCGGCTTATTTAACATTT 59.706 40.000 0.00 0.00 0.00 2.32
44 45 4.809426 CCTCGACTCGGCTTATTTAACATT 59.191 41.667 0.00 0.00 0.00 2.71
45 46 4.369182 CCTCGACTCGGCTTATTTAACAT 58.631 43.478 0.00 0.00 0.00 2.71
46 47 3.777478 CCTCGACTCGGCTTATTTAACA 58.223 45.455 0.00 0.00 0.00 2.41
47 48 2.538861 GCCTCGACTCGGCTTATTTAAC 59.461 50.000 6.91 0.00 44.17 2.01
48 49 2.797087 CGCCTCGACTCGGCTTATTTAA 60.797 50.000 11.89 0.00 45.37 1.52
49 50 1.268896 CGCCTCGACTCGGCTTATTTA 60.269 52.381 11.89 0.00 45.37 1.40
50 51 0.527817 CGCCTCGACTCGGCTTATTT 60.528 55.000 11.89 0.00 45.37 1.40
51 52 1.065928 CGCCTCGACTCGGCTTATT 59.934 57.895 11.89 0.00 45.37 1.40
52 53 2.722487 CGCCTCGACTCGGCTTAT 59.278 61.111 11.89 0.00 45.37 1.73
53 54 3.515286 CCGCCTCGACTCGGCTTA 61.515 66.667 11.89 0.00 45.37 3.09
77 78 2.126228 TAGTCCTTCCGCGCAACG 60.126 61.111 8.75 0.00 43.15 4.10
78 79 2.098831 GGTAGTCCTTCCGCGCAAC 61.099 63.158 8.75 0.00 0.00 4.17
79 80 2.263540 GGTAGTCCTTCCGCGCAA 59.736 61.111 8.75 0.00 0.00 4.85
80 81 3.766691 GGGTAGTCCTTCCGCGCA 61.767 66.667 8.75 0.00 0.00 6.09
81 82 3.766691 TGGGTAGTCCTTCCGCGC 61.767 66.667 0.00 0.00 36.20 6.86
82 83 2.183555 GTGGGTAGTCCTTCCGCG 59.816 66.667 0.00 0.00 36.20 6.46
83 84 2.582978 GGTGGGTAGTCCTTCCGC 59.417 66.667 0.00 0.00 36.20 5.54
84 85 2.364780 GGGGTGGGTAGTCCTTCCG 61.365 68.421 0.00 0.00 36.20 4.30
85 86 0.340908 TAGGGGTGGGTAGTCCTTCC 59.659 60.000 0.00 0.00 36.20 3.46
86 87 1.691801 CCTAGGGGTGGGTAGTCCTTC 60.692 61.905 0.00 0.00 36.20 3.46
87 88 0.342313 CCTAGGGGTGGGTAGTCCTT 59.658 60.000 0.00 0.00 36.20 3.36
88 89 2.025236 CCTAGGGGTGGGTAGTCCT 58.975 63.158 0.00 0.00 36.20 3.85
89 90 1.765255 GCCTAGGGGTGGGTAGTCC 60.765 68.421 11.72 0.00 34.45 3.85
90 91 1.765255 GGCCTAGGGGTGGGTAGTC 60.765 68.421 11.72 0.00 34.45 2.59
91 92 2.127685 TTGGCCTAGGGGTGGGTAGT 62.128 60.000 11.72 0.00 34.45 2.73
92 93 0.917333 TTTGGCCTAGGGGTGGGTAG 60.917 60.000 11.72 0.00 34.45 3.18
93 94 1.163801 TTTGGCCTAGGGGTGGGTA 59.836 57.895 11.72 0.00 34.45 3.69
94 95 2.121228 TTTGGCCTAGGGGTGGGT 60.121 61.111 11.72 0.00 34.45 4.51
95 96 2.359011 GTTTGGCCTAGGGGTGGG 59.641 66.667 11.72 0.00 34.45 4.61
96 97 2.045340 CGTTTGGCCTAGGGGTGG 60.045 66.667 11.72 0.00 34.45 4.61
97 98 1.376812 GTCGTTTGGCCTAGGGGTG 60.377 63.158 11.72 0.00 34.45 4.61
98 99 1.844289 TGTCGTTTGGCCTAGGGGT 60.844 57.895 11.72 0.00 34.45 4.95
99 100 1.376812 GTGTCGTTTGGCCTAGGGG 60.377 63.158 11.72 0.00 0.00 4.79
100 101 1.740296 CGTGTCGTTTGGCCTAGGG 60.740 63.158 11.72 0.00 0.00 3.53
101 102 1.005394 ACGTGTCGTTTGGCCTAGG 60.005 57.895 3.67 3.67 36.35 3.02
102 103 0.599204 ACACGTGTCGTTTGGCCTAG 60.599 55.000 17.22 0.00 38.32 3.02
103 104 0.876777 CACACGTGTCGTTTGGCCTA 60.877 55.000 20.49 0.00 38.32 3.93
104 105 2.177580 CACACGTGTCGTTTGGCCT 61.178 57.895 20.49 0.00 38.32 5.19
105 106 1.707239 TTCACACGTGTCGTTTGGCC 61.707 55.000 20.49 0.00 38.32 5.36
106 107 0.315869 CTTCACACGTGTCGTTTGGC 60.316 55.000 20.49 0.00 38.32 4.52
107 108 1.257936 CTCTTCACACGTGTCGTTTGG 59.742 52.381 20.49 6.67 38.32 3.28
108 109 2.190161 TCTCTTCACACGTGTCGTTTG 58.810 47.619 20.49 7.56 38.32 2.93
109 110 2.572191 TCTCTTCACACGTGTCGTTT 57.428 45.000 20.49 0.00 38.32 3.60
110 111 2.572191 TTCTCTTCACACGTGTCGTT 57.428 45.000 20.49 0.00 38.32 3.85
111 112 2.098607 TCTTTCTCTTCACACGTGTCGT 59.901 45.455 20.49 0.00 42.36 4.34
112 113 2.727777 TCTTTCTCTTCACACGTGTCG 58.272 47.619 20.49 14.53 0.00 4.35
113 114 4.113354 ACTTCTTTCTCTTCACACGTGTC 58.887 43.478 20.49 0.00 0.00 3.67
114 115 4.124851 ACTTCTTTCTCTTCACACGTGT 57.875 40.909 17.22 17.22 0.00 4.49
115 116 4.025647 GGAACTTCTTTCTCTTCACACGTG 60.026 45.833 15.48 15.48 34.26 4.49
116 117 4.120589 GGAACTTCTTTCTCTTCACACGT 58.879 43.478 0.00 0.00 34.26 4.49
117 118 4.119862 TGGAACTTCTTTCTCTTCACACG 58.880 43.478 0.00 0.00 34.26 4.49
118 119 5.220873 GGTTGGAACTTCTTTCTCTTCACAC 60.221 44.000 0.00 0.00 34.26 3.82
119 120 4.881850 GGTTGGAACTTCTTTCTCTTCACA 59.118 41.667 0.00 0.00 34.26 3.58
120 121 4.881850 TGGTTGGAACTTCTTTCTCTTCAC 59.118 41.667 0.00 0.00 34.26 3.18
121 122 5.110814 TGGTTGGAACTTCTTTCTCTTCA 57.889 39.130 0.00 0.00 34.26 3.02
122 123 5.563671 GCATGGTTGGAACTTCTTTCTCTTC 60.564 44.000 0.00 0.00 34.26 2.87
123 124 4.279420 GCATGGTTGGAACTTCTTTCTCTT 59.721 41.667 0.00 0.00 34.26 2.85
124 125 3.823304 GCATGGTTGGAACTTCTTTCTCT 59.177 43.478 0.00 0.00 34.26 3.10
125 126 3.569701 TGCATGGTTGGAACTTCTTTCTC 59.430 43.478 0.00 0.00 34.26 2.87
126 127 3.565307 TGCATGGTTGGAACTTCTTTCT 58.435 40.909 0.00 0.00 34.26 2.52
127 128 4.301628 CTTGCATGGTTGGAACTTCTTTC 58.698 43.478 0.00 0.00 0.00 2.62
128 129 3.493176 GCTTGCATGGTTGGAACTTCTTT 60.493 43.478 1.34 0.00 0.00 2.52
129 130 2.036346 GCTTGCATGGTTGGAACTTCTT 59.964 45.455 1.34 0.00 0.00 2.52
130 131 1.615392 GCTTGCATGGTTGGAACTTCT 59.385 47.619 1.34 0.00 0.00 2.85
131 132 1.337167 GGCTTGCATGGTTGGAACTTC 60.337 52.381 1.34 0.00 0.00 3.01
132 133 0.681175 GGCTTGCATGGTTGGAACTT 59.319 50.000 1.34 0.00 0.00 2.66
133 134 0.178953 AGGCTTGCATGGTTGGAACT 60.179 50.000 1.34 0.00 0.00 3.01
134 135 0.037975 CAGGCTTGCATGGTTGGAAC 60.038 55.000 1.34 0.00 0.00 3.62
135 136 0.469705 ACAGGCTTGCATGGTTGGAA 60.470 50.000 11.86 0.00 0.00 3.53
136 137 0.895100 GACAGGCTTGCATGGTTGGA 60.895 55.000 11.86 0.00 0.00 3.53
137 138 1.588082 GACAGGCTTGCATGGTTGG 59.412 57.895 11.86 0.00 0.00 3.77
138 139 0.896940 AGGACAGGCTTGCATGGTTG 60.897 55.000 11.86 0.00 0.00 3.77
139 140 0.698238 TAGGACAGGCTTGCATGGTT 59.302 50.000 11.86 0.00 0.00 3.67
140 141 0.921896 ATAGGACAGGCTTGCATGGT 59.078 50.000 11.86 0.00 0.00 3.55
141 142 1.679680 CAATAGGACAGGCTTGCATGG 59.320 52.381 11.86 0.00 0.00 3.66
142 143 2.357009 GTCAATAGGACAGGCTTGCATG 59.643 50.000 5.69 5.69 46.19 4.06
143 144 2.648059 GTCAATAGGACAGGCTTGCAT 58.352 47.619 0.00 0.00 46.19 3.96
144 145 2.113860 GTCAATAGGACAGGCTTGCA 57.886 50.000 0.00 0.00 46.19 4.08
161 162 1.623811 TGCCCTTACTTGACTCTGGTC 59.376 52.381 0.00 0.00 42.42 4.02
162 163 1.729586 TGCCCTTACTTGACTCTGGT 58.270 50.000 0.00 0.00 0.00 4.00
163 164 2.026822 ACATGCCCTTACTTGACTCTGG 60.027 50.000 0.00 0.00 0.00 3.86
164 165 3.265791 GACATGCCCTTACTTGACTCTG 58.734 50.000 0.00 0.00 0.00 3.35
165 166 2.237392 GGACATGCCCTTACTTGACTCT 59.763 50.000 0.00 0.00 0.00 3.24
166 167 2.027192 TGGACATGCCCTTACTTGACTC 60.027 50.000 0.00 0.00 34.97 3.36
167 168 1.985159 TGGACATGCCCTTACTTGACT 59.015 47.619 0.00 0.00 34.97 3.41
168 169 2.488153 GTTGGACATGCCCTTACTTGAC 59.512 50.000 0.00 0.00 34.97 3.18
169 170 2.790433 GTTGGACATGCCCTTACTTGA 58.210 47.619 0.00 0.00 34.97 3.02
170 171 1.468520 CGTTGGACATGCCCTTACTTG 59.531 52.381 0.00 0.00 34.97 3.16
171 172 1.821216 CGTTGGACATGCCCTTACTT 58.179 50.000 0.00 0.00 34.97 2.24
172 173 0.676782 GCGTTGGACATGCCCTTACT 60.677 55.000 0.00 0.00 34.97 2.24
173 174 1.800681 GCGTTGGACATGCCCTTAC 59.199 57.895 0.00 0.00 34.97 2.34
174 175 1.743623 CGCGTTGGACATGCCCTTA 60.744 57.895 0.00 0.00 33.21 2.69
175 176 3.055719 CGCGTTGGACATGCCCTT 61.056 61.111 0.00 0.00 33.21 3.95
237 238 6.213195 TGGCACCAGGATTAAAGAAATCAATT 59.787 34.615 0.00 0.00 45.05 2.32
238 239 5.721000 TGGCACCAGGATTAAAGAAATCAAT 59.279 36.000 0.00 0.00 45.05 2.57
272 273 2.456594 GATGCACACTTTTGCGCCGA 62.457 55.000 4.18 0.00 46.20 5.54
273 274 2.050168 ATGCACACTTTTGCGCCG 60.050 55.556 4.18 0.00 46.20 6.46
274 275 2.082366 CGATGCACACTTTTGCGCC 61.082 57.895 4.18 0.00 46.20 6.53
275 276 1.061799 CTCGATGCACACTTTTGCGC 61.062 55.000 0.00 0.00 46.20 6.09
276 277 1.061799 GCTCGATGCACACTTTTGCG 61.062 55.000 0.00 0.00 46.20 4.85
277 278 1.061799 CGCTCGATGCACACTTTTGC 61.062 55.000 0.00 0.00 43.06 3.68
278 279 1.061799 GCGCTCGATGCACACTTTTG 61.062 55.000 0.00 0.00 43.06 2.44
279 280 1.207593 GCGCTCGATGCACACTTTT 59.792 52.632 0.00 0.00 43.06 2.27
280 281 2.680913 GGCGCTCGATGCACACTTT 61.681 57.895 7.64 0.00 43.06 2.66
281 282 3.121030 GGCGCTCGATGCACACTT 61.121 61.111 7.64 0.00 43.06 3.16
282 283 4.377708 TGGCGCTCGATGCACACT 62.378 61.111 7.64 0.00 43.06 3.55
283 284 3.857854 CTGGCGCTCGATGCACAC 61.858 66.667 7.64 0.00 43.06 3.82
294 295 2.477972 GAAGGAAAAGTGCCTGGCGC 62.478 60.000 24.22 24.22 39.59 6.53
295 296 1.581447 GAAGGAAAAGTGCCTGGCG 59.419 57.895 14.98 0.00 35.50 5.69
296 297 1.536073 GGGAAGGAAAAGTGCCTGGC 61.536 60.000 12.87 12.87 35.50 4.85
297 298 1.244019 CGGGAAGGAAAAGTGCCTGG 61.244 60.000 0.00 0.00 35.50 4.45
298 299 1.866853 GCGGGAAGGAAAAGTGCCTG 61.867 60.000 0.00 0.00 35.50 4.85
299 300 1.603739 GCGGGAAGGAAAAGTGCCT 60.604 57.895 0.00 0.00 37.35 4.75
300 301 1.603739 AGCGGGAAGGAAAAGTGCC 60.604 57.895 0.00 0.00 0.00 5.01
301 302 1.172812 ACAGCGGGAAGGAAAAGTGC 61.173 55.000 0.00 0.00 0.00 4.40
302 303 2.178912 TACAGCGGGAAGGAAAAGTG 57.821 50.000 0.00 0.00 0.00 3.16
303 304 2.779506 CTTACAGCGGGAAGGAAAAGT 58.220 47.619 0.04 0.00 0.00 2.66
304 305 1.468914 GCTTACAGCGGGAAGGAAAAG 59.531 52.381 11.02 0.00 0.00 2.27
305 306 1.530323 GCTTACAGCGGGAAGGAAAA 58.470 50.000 11.02 0.00 0.00 2.29
306 307 3.243128 GCTTACAGCGGGAAGGAAA 57.757 52.632 11.02 0.00 0.00 3.13
325 326 0.457443 GCTAATCAAACAGCCTGGGC 59.543 55.000 3.00 3.00 42.33 5.36
331 332 2.754552 TGACATGGGCTAATCAAACAGC 59.245 45.455 0.00 0.00 37.05 4.40
332 333 5.587388 AATGACATGGGCTAATCAAACAG 57.413 39.130 0.00 0.00 0.00 3.16
333 334 5.067674 GCTAATGACATGGGCTAATCAAACA 59.932 40.000 0.00 0.00 0.00 2.83
334 335 5.067674 TGCTAATGACATGGGCTAATCAAAC 59.932 40.000 12.17 0.00 0.00 2.93
335 336 5.199723 TGCTAATGACATGGGCTAATCAAA 58.800 37.500 12.17 0.00 0.00 2.69
336 337 4.790937 TGCTAATGACATGGGCTAATCAA 58.209 39.130 12.17 0.00 0.00 2.57
337 338 4.436113 TGCTAATGACATGGGCTAATCA 57.564 40.909 12.17 0.00 0.00 2.57
338 339 5.123502 CAGATGCTAATGACATGGGCTAATC 59.876 44.000 12.17 8.68 0.00 1.75
339 340 5.008331 CAGATGCTAATGACATGGGCTAAT 58.992 41.667 12.17 1.72 0.00 1.73
340 341 4.392047 CAGATGCTAATGACATGGGCTAA 58.608 43.478 12.17 0.00 0.00 3.09
341 342 3.808265 GCAGATGCTAATGACATGGGCTA 60.808 47.826 12.17 0.00 38.21 3.93
342 343 2.860009 CAGATGCTAATGACATGGGCT 58.140 47.619 12.17 1.56 0.00 5.19
343 344 1.268899 GCAGATGCTAATGACATGGGC 59.731 52.381 0.00 6.09 38.21 5.36
344 345 1.884579 GGCAGATGCTAATGACATGGG 59.115 52.381 4.59 0.00 41.70 4.00
345 346 1.534163 CGGCAGATGCTAATGACATGG 59.466 52.381 4.59 0.00 41.70 3.66
346 347 2.216046 ACGGCAGATGCTAATGACATG 58.784 47.619 4.59 0.00 41.70 3.21
347 348 2.615447 CAACGGCAGATGCTAATGACAT 59.385 45.455 4.59 0.00 41.70 3.06
348 349 2.009051 CAACGGCAGATGCTAATGACA 58.991 47.619 4.59 0.00 41.70 3.58
349 350 2.009774 ACAACGGCAGATGCTAATGAC 58.990 47.619 4.59 0.00 41.70 3.06
350 351 2.401583 ACAACGGCAGATGCTAATGA 57.598 45.000 4.59 0.00 41.70 2.57
351 352 3.623060 ACTTACAACGGCAGATGCTAATG 59.377 43.478 4.59 4.11 41.70 1.90
352 353 3.871594 GACTTACAACGGCAGATGCTAAT 59.128 43.478 4.59 0.00 41.70 1.73
353 354 3.259064 GACTTACAACGGCAGATGCTAA 58.741 45.455 4.59 0.00 41.70 3.09
354 355 2.418197 GGACTTACAACGGCAGATGCTA 60.418 50.000 4.59 0.00 41.70 3.49
355 356 1.676014 GGACTTACAACGGCAGATGCT 60.676 52.381 4.59 0.00 41.70 3.79
356 357 0.727398 GGACTTACAACGGCAGATGC 59.273 55.000 0.00 0.00 41.14 3.91
357 358 0.999406 CGGACTTACAACGGCAGATG 59.001 55.000 0.00 0.00 0.00 2.90
358 359 0.108329 CCGGACTTACAACGGCAGAT 60.108 55.000 0.00 0.00 41.23 2.90
359 360 1.290955 CCGGACTTACAACGGCAGA 59.709 57.895 0.00 0.00 41.23 4.26
360 361 1.740296 CCCGGACTTACAACGGCAG 60.740 63.158 0.73 0.00 45.93 4.85
361 362 2.344500 CCCGGACTTACAACGGCA 59.656 61.111 0.73 0.00 45.93 5.69
362 363 3.122971 GCCCGGACTTACAACGGC 61.123 66.667 0.73 0.00 45.93 5.68
363 364 2.812178 CGCCCGGACTTACAACGG 60.812 66.667 0.73 0.00 46.79 4.44
364 365 3.484547 GCGCCCGGACTTACAACG 61.485 66.667 0.73 0.00 0.00 4.10
365 366 0.390209 TAAGCGCCCGGACTTACAAC 60.390 55.000 0.73 0.00 0.00 3.32
366 367 0.108520 CTAAGCGCCCGGACTTACAA 60.109 55.000 0.73 0.00 0.00 2.41
367 368 0.966875 TCTAAGCGCCCGGACTTACA 60.967 55.000 0.73 0.00 0.00 2.41
368 369 0.388294 ATCTAAGCGCCCGGACTTAC 59.612 55.000 0.73 0.00 0.00 2.34
369 370 0.387929 CATCTAAGCGCCCGGACTTA 59.612 55.000 0.73 7.21 0.00 2.24
370 371 1.144057 CATCTAAGCGCCCGGACTT 59.856 57.895 0.73 6.28 0.00 3.01
371 372 1.756950 TCATCTAAGCGCCCGGACT 60.757 57.895 0.73 0.00 0.00 3.85
372 373 1.591863 GTCATCTAAGCGCCCGGAC 60.592 63.158 0.73 0.00 0.00 4.79
373 374 1.327690 AAGTCATCTAAGCGCCCGGA 61.328 55.000 0.73 0.00 0.00 5.14
374 375 0.462047 AAAGTCATCTAAGCGCCCGG 60.462 55.000 2.29 0.00 0.00 5.73
375 376 1.369625 AAAAGTCATCTAAGCGCCCG 58.630 50.000 2.29 0.00 0.00 6.13
376 377 4.957759 TTAAAAAGTCATCTAAGCGCCC 57.042 40.909 2.29 0.00 0.00 6.13
377 378 7.812309 AAAATTAAAAAGTCATCTAAGCGCC 57.188 32.000 2.29 0.00 0.00 6.53
404 405 9.788960 GACGCTAATGAAGGAAAAATTAAAGAT 57.211 29.630 0.00 0.00 0.00 2.40
405 406 9.010029 AGACGCTAATGAAGGAAAAATTAAAGA 57.990 29.630 0.00 0.00 0.00 2.52
410 411 9.391006 TGTATAGACGCTAATGAAGGAAAAATT 57.609 29.630 0.00 0.00 0.00 1.82
411 412 8.958119 TGTATAGACGCTAATGAAGGAAAAAT 57.042 30.769 0.00 0.00 0.00 1.82
412 413 8.780846 TTGTATAGACGCTAATGAAGGAAAAA 57.219 30.769 0.00 0.00 0.00 1.94
413 414 7.011109 GCTTGTATAGACGCTAATGAAGGAAAA 59.989 37.037 0.00 0.00 0.00 2.29
414 415 6.479001 GCTTGTATAGACGCTAATGAAGGAAA 59.521 38.462 0.00 0.00 0.00 3.13
415 416 5.983720 GCTTGTATAGACGCTAATGAAGGAA 59.016 40.000 0.00 0.00 0.00 3.36
416 417 5.529791 GCTTGTATAGACGCTAATGAAGGA 58.470 41.667 0.00 0.00 0.00 3.36
417 418 4.383052 CGCTTGTATAGACGCTAATGAAGG 59.617 45.833 0.00 0.00 0.00 3.46
418 419 4.383052 CCGCTTGTATAGACGCTAATGAAG 59.617 45.833 0.00 0.00 0.00 3.02
419 420 4.295870 CCGCTTGTATAGACGCTAATGAA 58.704 43.478 0.00 0.00 0.00 2.57
420 421 3.855895 GCCGCTTGTATAGACGCTAATGA 60.856 47.826 0.00 0.00 0.00 2.57
421 422 2.408704 GCCGCTTGTATAGACGCTAATG 59.591 50.000 0.00 0.00 0.00 1.90
422 423 2.296471 AGCCGCTTGTATAGACGCTAAT 59.704 45.455 0.00 0.00 0.00 1.73
423 424 1.679680 AGCCGCTTGTATAGACGCTAA 59.320 47.619 0.00 0.00 0.00 3.09
424 425 1.266175 GAGCCGCTTGTATAGACGCTA 59.734 52.381 0.00 0.00 0.00 4.26
425 426 0.030908 GAGCCGCTTGTATAGACGCT 59.969 55.000 0.00 0.00 0.00 5.07
426 427 0.940047 GGAGCCGCTTGTATAGACGC 60.940 60.000 0.00 0.00 0.00 5.19
427 428 0.318784 GGGAGCCGCTTGTATAGACG 60.319 60.000 0.00 0.00 0.00 4.18
428 429 0.750850 TGGGAGCCGCTTGTATAGAC 59.249 55.000 0.00 0.00 0.00 2.59
429 430 1.717032 ATGGGAGCCGCTTGTATAGA 58.283 50.000 0.00 0.00 0.00 1.98
430 431 2.146342 CAATGGGAGCCGCTTGTATAG 58.854 52.381 0.00 0.00 0.00 1.31
431 432 1.202758 CCAATGGGAGCCGCTTGTATA 60.203 52.381 0.00 0.00 35.59 1.47
432 433 0.466189 CCAATGGGAGCCGCTTGTAT 60.466 55.000 0.00 0.00 35.59 2.29
433 434 1.077787 CCAATGGGAGCCGCTTGTA 60.078 57.895 0.00 0.00 35.59 2.41
434 435 2.361610 CCAATGGGAGCCGCTTGT 60.362 61.111 0.00 0.00 35.59 3.16
435 436 2.045045 TCCAATGGGAGCCGCTTG 60.045 61.111 0.00 0.00 38.64 4.01
443 444 1.905839 TTAGGGCATCTCCAATGGGA 58.094 50.000 0.00 0.00 42.29 4.37
444 445 2.522185 CATTAGGGCATCTCCAATGGG 58.478 52.381 0.00 0.00 36.21 4.00
445 446 2.158415 ACCATTAGGGCATCTCCAATGG 60.158 50.000 9.27 9.27 43.32 3.16
446 447 3.234234 ACCATTAGGGCATCTCCAATG 57.766 47.619 0.00 0.00 42.05 2.82
447 448 5.074929 TGAATACCATTAGGGCATCTCCAAT 59.925 40.000 0.00 0.00 42.05 3.16
448 449 4.415179 TGAATACCATTAGGGCATCTCCAA 59.585 41.667 0.00 0.00 42.05 3.53
449 450 3.980022 TGAATACCATTAGGGCATCTCCA 59.020 43.478 0.00 0.00 42.05 3.86
450 451 4.640771 TGAATACCATTAGGGCATCTCC 57.359 45.455 0.00 0.00 42.05 3.71
451 452 6.716628 TGAATTGAATACCATTAGGGCATCTC 59.283 38.462 0.00 0.00 42.05 2.75
452 453 6.613699 TGAATTGAATACCATTAGGGCATCT 58.386 36.000 0.00 0.00 42.05 2.90
453 454 6.899393 TGAATTGAATACCATTAGGGCATC 57.101 37.500 0.00 0.00 42.05 3.91
454 455 6.783977 ACATGAATTGAATACCATTAGGGCAT 59.216 34.615 0.00 0.00 42.05 4.40
455 456 6.135454 ACATGAATTGAATACCATTAGGGCA 58.865 36.000 0.00 0.00 42.05 5.36
456 457 6.568462 CGACATGAATTGAATACCATTAGGGC 60.568 42.308 0.00 0.00 42.05 5.19
457 458 6.072508 CCGACATGAATTGAATACCATTAGGG 60.073 42.308 0.00 0.00 44.81 3.53
458 459 6.486657 ACCGACATGAATTGAATACCATTAGG 59.513 38.462 0.00 0.00 42.21 2.69
502 503 5.408604 AGTTGTACATTAGCTTTCTTGGTCG 59.591 40.000 0.00 0.00 0.00 4.79
505 506 5.408604 ACGAGTTGTACATTAGCTTTCTTGG 59.591 40.000 0.00 0.00 0.00 3.61
515 516 9.486497 TGGTTAATTGTAACGAGTTGTACATTA 57.514 29.630 0.00 0.00 40.57 1.90
518 519 7.208777 TCTGGTTAATTGTAACGAGTTGTACA 58.791 34.615 0.00 0.00 43.11 2.90
521 522 6.518493 TCTCTGGTTAATTGTAACGAGTTGT 58.482 36.000 8.03 0.00 43.11 3.32
522 523 7.416154 TTCTCTGGTTAATTGTAACGAGTTG 57.584 36.000 8.03 4.41 43.11 3.16
523 524 8.617290 AATTCTCTGGTTAATTGTAACGAGTT 57.383 30.769 8.03 0.00 43.11 3.01
524 525 8.617290 AAATTCTCTGGTTAATTGTAACGAGT 57.383 30.769 8.03 0.00 43.11 4.18
525 526 8.936864 AGAAATTCTCTGGTTAATTGTAACGAG 58.063 33.333 0.00 3.13 43.65 4.18
526 527 8.842358 AGAAATTCTCTGGTTAATTGTAACGA 57.158 30.769 0.00 0.00 40.57 3.85
527 528 9.543018 GAAGAAATTCTCTGGTTAATTGTAACG 57.457 33.333 0.00 0.00 35.80 3.18
528 529 9.543018 CGAAGAAATTCTCTGGTTAATTGTAAC 57.457 33.333 0.00 0.00 34.92 2.50
529 530 9.496873 TCGAAGAAATTCTCTGGTTAATTGTAA 57.503 29.630 0.00 0.00 33.37 2.41
530 531 9.496873 TTCGAAGAAATTCTCTGGTTAATTGTA 57.503 29.630 0.00 0.00 45.90 2.41
531 532 7.979444 TCGAAGAAATTCTCTGGTTAATTGT 57.021 32.000 0.00 0.00 33.37 2.71
532 533 8.507249 AGTTCGAAGAAATTCTCTGGTTAATTG 58.493 33.333 0.00 0.00 45.90 2.32
533 534 8.622948 AGTTCGAAGAAATTCTCTGGTTAATT 57.377 30.769 0.00 0.00 45.90 1.40
534 535 8.507249 CAAGTTCGAAGAAATTCTCTGGTTAAT 58.493 33.333 0.00 0.00 45.90 1.40
535 536 7.713507 TCAAGTTCGAAGAAATTCTCTGGTTAA 59.286 33.333 0.00 0.00 45.90 2.01
536 537 7.214381 TCAAGTTCGAAGAAATTCTCTGGTTA 58.786 34.615 0.00 0.00 45.90 2.85
537 538 6.055588 TCAAGTTCGAAGAAATTCTCTGGTT 58.944 36.000 0.00 0.00 45.90 3.67
538 539 5.611374 TCAAGTTCGAAGAAATTCTCTGGT 58.389 37.500 0.00 0.00 45.90 4.00
539 540 6.369890 TGATCAAGTTCGAAGAAATTCTCTGG 59.630 38.462 0.00 0.00 45.90 3.86
540 541 7.117523 AGTGATCAAGTTCGAAGAAATTCTCTG 59.882 37.037 0.00 0.00 45.90 3.35
541 542 7.158021 AGTGATCAAGTTCGAAGAAATTCTCT 58.842 34.615 0.00 0.00 45.90 3.10
542 543 7.357951 AGTGATCAAGTTCGAAGAAATTCTC 57.642 36.000 0.00 0.00 45.90 2.87
543 544 7.442364 TCAAGTGATCAAGTTCGAAGAAATTCT 59.558 33.333 0.00 0.00 45.90 2.40
551 552 3.067106 GGCTCAAGTGATCAAGTTCGAA 58.933 45.455 0.00 0.00 0.00 3.71
562 563 6.474140 TTATAGTATTTCGGGCTCAAGTGA 57.526 37.500 0.00 0.00 0.00 3.41
564 565 6.646267 TGTTTATAGTATTTCGGGCTCAAGT 58.354 36.000 0.00 0.00 0.00 3.16
565 566 7.359264 CGATGTTTATAGTATTTCGGGCTCAAG 60.359 40.741 0.00 0.00 0.00 3.02
566 567 6.422701 CGATGTTTATAGTATTTCGGGCTCAA 59.577 38.462 0.00 0.00 0.00 3.02
567 568 5.924254 CGATGTTTATAGTATTTCGGGCTCA 59.076 40.000 0.00 0.00 0.00 4.26
568 569 6.154445 TCGATGTTTATAGTATTTCGGGCTC 58.846 40.000 0.00 0.00 0.00 4.70
569 570 6.092955 TCGATGTTTATAGTATTTCGGGCT 57.907 37.500 0.00 0.00 0.00 5.19
570 571 5.924825 ACTCGATGTTTATAGTATTTCGGGC 59.075 40.000 0.00 0.00 0.00 6.13
571 572 6.304922 CGACTCGATGTTTATAGTATTTCGGG 59.695 42.308 0.00 0.00 0.00 5.14
572 573 6.304922 CCGACTCGATGTTTATAGTATTTCGG 59.695 42.308 0.00 0.00 0.00 4.30
573 574 6.183359 GCCGACTCGATGTTTATAGTATTTCG 60.183 42.308 0.00 0.00 0.00 3.46
574 575 6.089150 GGCCGACTCGATGTTTATAGTATTTC 59.911 42.308 0.00 0.00 0.00 2.17
575 576 5.924825 GGCCGACTCGATGTTTATAGTATTT 59.075 40.000 0.00 0.00 0.00 1.40
576 577 5.243283 AGGCCGACTCGATGTTTATAGTATT 59.757 40.000 0.00 0.00 0.00 1.89
577 578 4.765856 AGGCCGACTCGATGTTTATAGTAT 59.234 41.667 0.00 0.00 0.00 2.12
578 579 4.023450 CAGGCCGACTCGATGTTTATAGTA 60.023 45.833 0.00 0.00 0.00 1.82
579 580 2.957006 AGGCCGACTCGATGTTTATAGT 59.043 45.455 0.00 0.00 0.00 2.12
580 581 3.309388 CAGGCCGACTCGATGTTTATAG 58.691 50.000 0.00 0.00 0.00 1.31
581 582 2.545113 GCAGGCCGACTCGATGTTTATA 60.545 50.000 0.00 0.00 0.00 0.98
582 583 1.806623 GCAGGCCGACTCGATGTTTAT 60.807 52.381 0.00 0.00 0.00 1.40
583 584 0.459585 GCAGGCCGACTCGATGTTTA 60.460 55.000 0.00 0.00 0.00 2.01
613 614 0.457035 CAATTTGGCCGGATGAGTGG 59.543 55.000 5.05 0.00 0.00 4.00
615 616 1.322538 GGCAATTTGGCCGGATGAGT 61.323 55.000 5.05 0.00 45.40 3.41
616 617 1.438814 GGCAATTTGGCCGGATGAG 59.561 57.895 5.05 0.00 45.40 2.90
617 618 3.614806 GGCAATTTGGCCGGATGA 58.385 55.556 5.05 0.00 45.40 2.92
624 625 2.202298 CGTCGACGGCAATTTGGC 60.202 61.111 29.70 12.66 39.85 4.52
625 626 2.202298 GCGTCGACGGCAATTTGG 60.202 61.111 36.13 8.46 40.23 3.28
626 627 2.570581 CGCGTCGACGGCAATTTG 60.571 61.111 36.13 13.36 40.23 2.32
627 628 2.488852 GAACGCGTCGACGGCAATTT 62.489 55.000 36.13 20.43 40.23 1.82
628 629 3.007070 GAACGCGTCGACGGCAATT 62.007 57.895 36.13 23.39 40.23 2.32
629 630 3.475774 GAACGCGTCGACGGCAAT 61.476 61.111 36.13 19.73 40.23 3.56
630 631 4.927444 TGAACGCGTCGACGGCAA 62.927 61.111 36.13 14.20 40.23 4.52
631 632 4.710695 ATGAACGCGTCGACGGCA 62.711 61.111 36.13 20.34 40.23 5.69
632 633 3.898640 GATGAACGCGTCGACGGC 61.899 66.667 36.13 26.46 40.23 5.68
633 634 2.202440 AGATGAACGCGTCGACGG 60.202 61.111 36.13 27.45 40.23 4.79
634 635 2.215604 GGAGATGAACGCGTCGACG 61.216 63.158 32.57 32.57 43.27 5.12
635 636 0.456312 AAGGAGATGAACGCGTCGAC 60.456 55.000 14.44 5.18 35.16 4.20
636 637 0.456142 CAAGGAGATGAACGCGTCGA 60.456 55.000 14.44 1.44 35.16 4.20
637 638 0.732880 ACAAGGAGATGAACGCGTCG 60.733 55.000 14.44 0.00 35.16 5.12
638 639 1.126846 CAACAAGGAGATGAACGCGTC 59.873 52.381 14.44 7.01 0.00 5.19
639 640 1.148310 CAACAAGGAGATGAACGCGT 58.852 50.000 5.58 5.58 0.00 6.01
640 641 1.428448 TCAACAAGGAGATGAACGCG 58.572 50.000 3.53 3.53 0.00 6.01
641 642 3.484229 CGATTCAACAAGGAGATGAACGC 60.484 47.826 0.00 0.00 41.10 4.84
642 643 3.484229 GCGATTCAACAAGGAGATGAACG 60.484 47.826 0.00 0.00 41.10 3.95
643 644 3.686726 AGCGATTCAACAAGGAGATGAAC 59.313 43.478 0.00 0.00 41.10 3.18
644 645 3.686241 CAGCGATTCAACAAGGAGATGAA 59.314 43.478 0.00 0.00 42.26 2.57
645 646 3.055891 TCAGCGATTCAACAAGGAGATGA 60.056 43.478 0.00 0.00 0.00 2.92
646 647 3.264947 TCAGCGATTCAACAAGGAGATG 58.735 45.455 0.00 0.00 0.00 2.90
647 648 3.616956 TCAGCGATTCAACAAGGAGAT 57.383 42.857 0.00 0.00 0.00 2.75
648 649 3.264947 CATCAGCGATTCAACAAGGAGA 58.735 45.455 0.00 0.00 0.00 3.71
649 650 2.223203 GCATCAGCGATTCAACAAGGAG 60.223 50.000 0.00 0.00 0.00 3.69
650 651 1.739466 GCATCAGCGATTCAACAAGGA 59.261 47.619 0.00 0.00 0.00 3.36
651 652 2.184385 GCATCAGCGATTCAACAAGG 57.816 50.000 0.00 0.00 0.00 3.61
663 664 0.093705 GTCGTTGAGTTCGCATCAGC 59.906 55.000 0.00 0.00 37.42 4.26
664 665 1.651138 GAGTCGTTGAGTTCGCATCAG 59.349 52.381 0.00 0.00 0.00 2.90
665 666 1.698165 GAGTCGTTGAGTTCGCATCA 58.302 50.000 0.00 0.00 0.00 3.07
666 667 0.635731 CGAGTCGTTGAGTTCGCATC 59.364 55.000 3.82 0.00 0.00 3.91
667 668 1.344942 GCGAGTCGTTGAGTTCGCAT 61.345 55.000 15.08 0.00 44.60 4.73
668 669 2.014554 GCGAGTCGTTGAGTTCGCA 61.015 57.895 15.08 0.00 44.60 5.10
669 670 2.014554 TGCGAGTCGTTGAGTTCGC 61.015 57.895 15.08 14.87 45.31 4.70
670 671 1.767388 GTGCGAGTCGTTGAGTTCG 59.233 57.895 15.08 0.00 0.00 3.95
671 672 1.606350 CCGTGCGAGTCGTTGAGTTC 61.606 60.000 15.08 0.00 0.00 3.01
672 673 1.660575 CCGTGCGAGTCGTTGAGTT 60.661 57.895 15.08 0.00 0.00 3.01
673 674 2.050351 CCGTGCGAGTCGTTGAGT 60.050 61.111 15.08 0.00 0.00 3.41
674 675 3.470567 GCCGTGCGAGTCGTTGAG 61.471 66.667 15.08 2.51 0.00 3.02
708 709 1.001517 TTTCTATTGCTGGCCGGCA 60.002 52.632 35.67 35.67 40.74 5.69
709 710 0.748005 TCTTTCTATTGCTGGCCGGC 60.748 55.000 30.57 30.57 0.00 6.13
710 711 1.750193 TTCTTTCTATTGCTGGCCGG 58.250 50.000 7.41 7.41 0.00 6.13
711 712 2.476185 CGTTTCTTTCTATTGCTGGCCG 60.476 50.000 0.00 0.00 0.00 6.13
712 713 2.747446 TCGTTTCTTTCTATTGCTGGCC 59.253 45.455 0.00 0.00 0.00 5.36
713 714 4.406943 CTTCGTTTCTTTCTATTGCTGGC 58.593 43.478 0.00 0.00 0.00 4.85
714 715 4.142600 CCCTTCGTTTCTTTCTATTGCTGG 60.143 45.833 0.00 0.00 0.00 4.85
715 716 4.672801 GCCCTTCGTTTCTTTCTATTGCTG 60.673 45.833 0.00 0.00 0.00 4.41
716 717 3.440522 GCCCTTCGTTTCTTTCTATTGCT 59.559 43.478 0.00 0.00 0.00 3.91
727 728 2.682155 AGATCTCAGCCCTTCGTTTC 57.318 50.000 0.00 0.00 0.00 2.78
741 745 1.828660 CCGCGGGTGGAGTAGATCT 60.829 63.158 20.10 0.00 0.00 2.75
756 760 4.778143 AATCCGTGGCTCCACCGC 62.778 66.667 12.99 0.00 46.23 5.68
810 817 1.067425 TGTACGTGATCGGAAACTGGG 60.067 52.381 0.00 0.00 41.85 4.45
815 822 8.651391 ATTATTATTGTGTACGTGATCGGAAA 57.349 30.769 0.00 0.00 41.85 3.13
835 842 9.872684 ATGGATGTTTATTCTGACCAGATTATT 57.127 29.630 0.01 0.00 37.29 1.40
836 843 9.512588 GATGGATGTTTATTCTGACCAGATTAT 57.487 33.333 0.01 0.00 37.29 1.28
837 844 8.493607 TGATGGATGTTTATTCTGACCAGATTA 58.506 33.333 0.01 0.00 37.29 1.75
842 849 5.353956 CGTTGATGGATGTTTATTCTGACCA 59.646 40.000 0.00 0.00 0.00 4.02
843 850 5.220854 CCGTTGATGGATGTTTATTCTGACC 60.221 44.000 0.00 0.00 0.00 4.02
844 851 5.584649 TCCGTTGATGGATGTTTATTCTGAC 59.415 40.000 0.00 0.00 31.53 3.51
845 852 5.739959 TCCGTTGATGGATGTTTATTCTGA 58.260 37.500 0.00 0.00 31.53 3.27
846 853 6.435430 TTCCGTTGATGGATGTTTATTCTG 57.565 37.500 0.00 0.00 38.00 3.02
848 855 5.273944 GCTTCCGTTGATGGATGTTTATTC 58.726 41.667 6.91 0.00 38.00 1.75
849 856 4.201910 CGCTTCCGTTGATGGATGTTTATT 60.202 41.667 6.91 0.00 38.00 1.40
850 857 3.312421 CGCTTCCGTTGATGGATGTTTAT 59.688 43.478 6.91 0.00 38.00 1.40
855 862 1.353103 GCGCTTCCGTTGATGGATG 59.647 57.895 0.00 0.00 38.00 3.51
857 864 2.813474 CGCGCTTCCGTTGATGGA 60.813 61.111 5.56 0.00 36.67 3.41
864 871 2.171725 GCTTTATCCGCGCTTCCGT 61.172 57.895 5.56 0.00 36.67 4.69
885 892 3.834799 GGAGGGGTAGACGTGCGG 61.835 72.222 0.00 0.00 0.00 5.69
893 900 1.141234 GTTTCGAGCGGAGGGGTAG 59.859 63.158 0.00 0.00 0.00 3.18
901 908 3.460144 GAAGTCGGTTTCGAGCGG 58.540 61.111 0.00 0.00 46.91 5.52
964 971 1.153939 GCACAGCACTCTCGTCGAT 60.154 57.895 0.00 0.00 0.00 3.59
1277 1290 3.612247 TTGAGGGCGCTCTGCTTCC 62.612 63.158 28.52 0.00 45.43 3.46
1280 1293 4.774503 GCTTGAGGGCGCTCTGCT 62.775 66.667 28.52 0.00 45.43 4.24
1364 1383 4.626081 AACGCTTCCTGCCGCTGT 62.626 61.111 0.00 0.00 38.78 4.40
1367 1386 3.314388 CTGAAACGCTTCCTGCCGC 62.314 63.158 0.00 0.00 38.78 6.53
1369 1388 2.982744 GCCTGAAACGCTTCCTGCC 61.983 63.158 0.00 0.00 38.78 4.85
1373 1392 0.519077 CTTCTGCCTGAAACGCTTCC 59.481 55.000 0.00 0.00 33.79 3.46
1433 1452 1.421410 CCCTGAATCGCGCACTACAC 61.421 60.000 8.75 0.00 0.00 2.90
1483 1502 4.117661 AGAGTCGCCGCCGTCTTC 62.118 66.667 0.00 0.00 33.15 2.87
1497 1516 1.196012 GTAGTTCCTCCCCACCAGAG 58.804 60.000 0.00 0.00 0.00 3.35
1516 1535 1.257750 TGGTCACGGTCCATCTCCTG 61.258 60.000 0.00 0.00 0.00 3.86
1559 1578 1.446099 TCGCGTTCTCTGATGTGCC 60.446 57.895 5.77 0.00 0.00 5.01
1713 1732 2.675348 CACCTTCATCTTCTTCCGCTTC 59.325 50.000 0.00 0.00 0.00 3.86
1807 1826 0.392998 TTCCTGCGCCTGAATTCCTC 60.393 55.000 4.18 0.00 0.00 3.71
1823 1842 3.863041 ACAAGCTCGTAGATTTCCTTCC 58.137 45.455 0.00 0.00 33.89 3.46
1956 1975 3.441011 CTCGGGGTCATGGTACCGC 62.441 68.421 7.57 12.57 45.58 5.68
2006 2025 1.404851 CCTCCTGCTCCGAGAAGAAAC 60.405 57.143 4.77 0.00 0.00 2.78
2239 2258 1.135286 GTACACGGGTAGGTTCTTCCG 60.135 57.143 0.00 0.00 46.95 4.30
2247 2266 3.323243 CTTGAACTTGTACACGGGTAGG 58.677 50.000 0.00 0.00 0.00 3.18
2250 2269 1.764134 TCCTTGAACTTGTACACGGGT 59.236 47.619 0.00 0.00 0.00 5.28
2661 2680 2.740714 GAAGCGCGCGATGTCCTTT 61.741 57.895 37.18 11.66 0.00 3.11
2813 2832 2.782222 GCGATGTAGTCCGCCTCCA 61.782 63.158 0.00 0.00 45.06 3.86
2841 2860 4.363990 AGCTGCAGGACCGTGACG 62.364 66.667 17.12 0.00 0.00 4.35
3072 3091 2.158959 CGTCTCGGCGATGTTGGTC 61.159 63.158 11.27 0.00 0.00 4.02
3288 3307 2.900167 CGTGTCGTCGTCCAGGTCA 61.900 63.158 0.00 0.00 0.00 4.02
3603 3622 1.804326 CCGGTAGAAGACGGCGTTG 60.804 63.158 16.19 0.00 43.96 4.10
3690 3709 4.908687 ACGTTGAGCAGCGCCACA 62.909 61.111 2.29 0.00 38.63 4.17
3894 3913 3.420943 GCGGCATTGCGGAAGTAT 58.579 55.556 19.15 0.00 0.00 2.12
4137 4156 0.034896 TGTCCTTGCCCGTCTTCTTC 59.965 55.000 0.00 0.00 0.00 2.87
4271 4327 1.263217 GTGCGTCGTCACTGGATTTTT 59.737 47.619 11.08 0.00 34.29 1.94
4272 4328 0.865769 GTGCGTCGTCACTGGATTTT 59.134 50.000 11.08 0.00 34.29 1.82
4273 4329 0.033504 AGTGCGTCGTCACTGGATTT 59.966 50.000 17.59 0.00 44.88 2.17
4274 4330 0.885879 TAGTGCGTCGTCACTGGATT 59.114 50.000 23.61 7.68 45.95 3.01
4275 4331 0.170561 GTAGTGCGTCGTCACTGGAT 59.829 55.000 23.61 7.96 45.95 3.41
4276 4332 0.887836 AGTAGTGCGTCGTCACTGGA 60.888 55.000 23.61 9.28 45.95 3.86
4277 4333 0.800631 TAGTAGTGCGTCGTCACTGG 59.199 55.000 23.61 0.00 45.95 4.00
4278 4334 1.196127 TGTAGTAGTGCGTCGTCACTG 59.804 52.381 23.61 0.00 45.95 3.66
4280 4336 2.539346 ATGTAGTAGTGCGTCGTCAC 57.461 50.000 10.56 10.56 37.24 3.67
4281 4337 2.745821 AGAATGTAGTAGTGCGTCGTCA 59.254 45.455 0.00 0.00 0.00 4.35
4282 4338 3.063725 AGAGAATGTAGTAGTGCGTCGTC 59.936 47.826 0.00 0.00 0.00 4.20
4283 4339 3.008330 AGAGAATGTAGTAGTGCGTCGT 58.992 45.455 0.00 0.00 0.00 4.34
4284 4340 3.546417 GGAGAGAATGTAGTAGTGCGTCG 60.546 52.174 0.00 0.00 0.00 5.12
4285 4341 3.377485 TGGAGAGAATGTAGTAGTGCGTC 59.623 47.826 0.00 0.00 0.00 5.19
4286 4342 3.353557 TGGAGAGAATGTAGTAGTGCGT 58.646 45.455 0.00 0.00 0.00 5.24
4287 4343 4.576216 ATGGAGAGAATGTAGTAGTGCG 57.424 45.455 0.00 0.00 0.00 5.34
4288 4344 6.341316 TGAAATGGAGAGAATGTAGTAGTGC 58.659 40.000 0.00 0.00 0.00 4.40
4289 4345 8.777865 TTTGAAATGGAGAGAATGTAGTAGTG 57.222 34.615 0.00 0.00 0.00 2.74
4290 4346 9.965902 AATTTGAAATGGAGAGAATGTAGTAGT 57.034 29.630 0.00 0.00 0.00 2.73
4321 4377 6.122964 AGAAGCTTATTTGGGGACATACTTC 58.877 40.000 0.00 0.00 42.32 3.01
4415 4637 7.979444 AAAACACAGCAACATATAGTACACT 57.021 32.000 0.00 0.00 0.00 3.55
4497 4719 9.453572 CTGGGCTTGATATGATAAGCTAATTTA 57.546 33.333 12.85 0.00 46.40 1.40
4499 4721 6.376581 GCTGGGCTTGATATGATAAGCTAATT 59.623 38.462 12.85 0.00 46.40 1.40
4501 4723 5.221904 TGCTGGGCTTGATATGATAAGCTAA 60.222 40.000 12.85 4.57 46.40 3.09
4502 4724 4.286808 TGCTGGGCTTGATATGATAAGCTA 59.713 41.667 12.85 5.33 46.40 3.32
4503 4725 3.073503 TGCTGGGCTTGATATGATAAGCT 59.926 43.478 12.85 0.00 46.40 3.74
4504 4726 3.415212 TGCTGGGCTTGATATGATAAGC 58.585 45.455 0.00 0.00 46.45 3.09
4568 4818 4.214119 CCATGATAAGTGGAAACCTATGCG 59.786 45.833 0.00 0.00 39.12 4.73
4624 4874 7.830739 ACCATGTCATGTAGATTTCTTTTTCC 58.169 34.615 11.84 0.00 0.00 3.13
4745 4995 4.169696 TTATGGTCCTGGCGGCGG 62.170 66.667 11.58 11.58 0.00 6.13
4746 4996 2.588877 CTTATGGTCCTGGCGGCG 60.589 66.667 0.51 0.51 0.00 6.46
4747 4997 2.203209 CCTTATGGTCCTGGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
4882 5132 2.516930 CAAGGTGGCGGCTATGGG 60.517 66.667 11.43 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.