Multiple sequence alignment - TraesCS1A01G242900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G242900 chr1A 100.000 3669 0 0 1 3669 430627106 430623438 0.000000e+00 6776.0
1 TraesCS1A01G242900 chr1A 92.019 426 20 12 215 633 72499983 72499565 1.470000e-163 586.0
2 TraesCS1A01G242900 chr1A 87.059 255 24 6 279 529 564601667 564601916 2.790000e-71 279.0
3 TraesCS1A01G242900 chr1A 89.697 165 15 2 3138 3301 395177449 395177612 3.710000e-50 209.0
4 TraesCS1A01G242900 chr1D 90.319 1911 106 41 1715 3592 333004598 333002734 0.000000e+00 2431.0
5 TraesCS1A01G242900 chr1D 92.670 955 48 8 769 1712 333005639 333004696 0.000000e+00 1356.0
6 TraesCS1A01G242900 chr1D 85.106 188 24 4 3104 3291 7349672 7349855 4.840000e-44 189.0
7 TraesCS1A01G242900 chr1D 94.737 95 3 1 3577 3669 333002716 333002622 2.950000e-31 147.0
8 TraesCS1A01G242900 chr1B 93.465 1622 76 16 1561 3158 448534566 448532951 0.000000e+00 2381.0
9 TraesCS1A01G242900 chr1B 93.263 950 46 12 630 1578 448535545 448534613 0.000000e+00 1384.0
10 TraesCS1A01G242900 chr1B 92.184 499 17 9 3173 3669 448532764 448532286 0.000000e+00 686.0
11 TraesCS1A01G242900 chr6B 87.636 461 51 4 172 630 62817721 62818177 6.980000e-147 531.0
12 TraesCS1A01G242900 chr6B 86.525 423 48 6 167 585 6791953 6792370 1.200000e-124 457.0
13 TraesCS1A01G242900 chr6B 90.909 154 13 1 3138 3291 537553993 537553841 4.800000e-49 206.0
14 TraesCS1A01G242900 chr2A 86.515 482 56 7 160 640 688219720 688220193 4.200000e-144 521.0
15 TraesCS1A01G242900 chr2A 84.917 484 66 5 158 640 688208972 688209449 1.980000e-132 483.0
16 TraesCS1A01G242900 chr6A 86.393 463 47 7 173 633 49501708 49502156 3.290000e-135 492.0
17 TraesCS1A01G242900 chr3A 87.970 399 42 4 235 630 9818924 9819319 2.000000e-127 466.0
18 TraesCS1A01G242900 chr4B 90.323 155 14 1 3137 3291 438375334 438375181 6.210000e-48 202.0
19 TraesCS1A01G242900 chr4B 89.308 159 16 1 3138 3296 106227561 106227404 8.040000e-47 198.0
20 TraesCS1A01G242900 chr4A 90.789 152 13 1 3137 3288 109850054 109850204 6.210000e-48 202.0
21 TraesCS1A01G242900 chr4A 90.260 154 14 1 3138 3291 460230801 460230649 2.230000e-47 200.0
22 TraesCS1A01G242900 chr2D 90.260 154 14 1 3138 3291 79056319 79056167 2.230000e-47 200.0
23 TraesCS1A01G242900 chrUn 88.095 168 18 2 3132 3298 126680472 126680638 8.040000e-47 198.0
24 TraesCS1A01G242900 chr2B 92.727 110 8 0 170 279 84986938 84987047 3.790000e-35 159.0
25 TraesCS1A01G242900 chr3B 90.541 74 6 1 261 333 226000890 226000817 3.020000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G242900 chr1A 430623438 430627106 3668 True 6776.000000 6776 100.000000 1 3669 1 chr1A.!!$R2 3668
1 TraesCS1A01G242900 chr1D 333002622 333005639 3017 True 1311.333333 2431 92.575333 769 3669 3 chr1D.!!$R1 2900
2 TraesCS1A01G242900 chr1B 448532286 448535545 3259 True 1483.666667 2381 92.970667 630 3669 3 chr1B.!!$R1 3039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.037512 CATCCGCTGCCTCCTCTATG 60.038 60.0 0.00 0.00 0.00 2.23 F
308 309 0.107410 TGTCTTCCGCAACAACACCT 60.107 50.0 0.00 0.00 0.00 4.00 F
679 680 0.173708 GTGAAGGTCCTAGACAGCGG 59.826 60.0 0.00 0.00 33.68 5.52 F
1393 1401 0.105593 AGATCGATGCGCATCAGGTT 59.894 50.0 40.42 25.48 37.69 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1101 1109 0.107654 AACCCAGCAGATTAGGCGAC 60.108 55.000 0.00 0.0 36.08 5.19 R
1331 1339 0.546598 GGGTGGGCTGCACTTACTAT 59.453 55.000 2.50 0.0 0.00 2.12 R
2276 2450 1.740296 GCGTCGCCTAAGCAAAGGA 60.740 57.895 5.75 0.0 39.15 3.36 R
2710 2885 0.607217 TCCAGACTTCACCGCGTCTA 60.607 55.000 4.92 0.0 38.37 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.421673 AAAATGTTTGCAAAAATGGAAAATGG 57.578 26.923 15.61 0.00 31.24 3.16
31 32 6.956202 ATGTTTGCAAAAATGGAAAATGGA 57.044 29.167 14.19 0.00 31.24 3.41
32 33 6.764308 TGTTTGCAAAAATGGAAAATGGAA 57.236 29.167 14.67 0.00 31.24 3.53
33 34 7.161773 TGTTTGCAAAAATGGAAAATGGAAA 57.838 28.000 14.67 0.00 31.24 3.13
34 35 7.605449 TGTTTGCAAAAATGGAAAATGGAAAA 58.395 26.923 14.67 0.00 34.01 2.29
35 36 8.255905 TGTTTGCAAAAATGGAAAATGGAAAAT 58.744 25.926 14.67 0.00 34.01 1.82
36 37 8.541312 GTTTGCAAAAATGGAAAATGGAAAATG 58.459 29.630 14.67 0.00 34.01 2.32
37 38 7.578310 TGCAAAAATGGAAAATGGAAAATGA 57.422 28.000 0.00 0.00 0.00 2.57
38 39 8.004087 TGCAAAAATGGAAAATGGAAAATGAA 57.996 26.923 0.00 0.00 0.00 2.57
39 40 8.472413 TGCAAAAATGGAAAATGGAAAATGAAA 58.528 25.926 0.00 0.00 0.00 2.69
40 41 9.310716 GCAAAAATGGAAAATGGAAAATGAAAA 57.689 25.926 0.00 0.00 0.00 2.29
125 126 9.612066 ACATAAAAGAAAAAGCAAAAATCCAGA 57.388 25.926 0.00 0.00 0.00 3.86
191 192 3.121738 GAAACTCTTTCCTTCACCCGA 57.878 47.619 0.00 0.00 33.56 5.14
192 193 2.545537 AACTCTTTCCTTCACCCGAC 57.454 50.000 0.00 0.00 0.00 4.79
193 194 0.317479 ACTCTTTCCTTCACCCGACG 59.683 55.000 0.00 0.00 0.00 5.12
194 195 0.389948 CTCTTTCCTTCACCCGACGG 60.390 60.000 6.99 6.99 31.71 4.79
195 196 0.828762 TCTTTCCTTCACCCGACGGA 60.829 55.000 17.49 0.00 37.78 4.69
196 197 0.249398 CTTTCCTTCACCCGACGGAT 59.751 55.000 17.49 0.00 39.20 4.18
197 198 0.248289 TTTCCTTCACCCGACGGATC 59.752 55.000 17.49 0.00 39.20 3.36
206 207 3.902063 CGACGGATCGCACGCAAG 61.902 66.667 0.00 0.00 42.43 4.01
207 208 4.210304 GACGGATCGCACGCAAGC 62.210 66.667 0.00 0.00 45.62 4.01
210 211 3.204827 GGATCGCACGCAAGCCAT 61.205 61.111 0.00 0.00 45.62 4.40
211 212 2.325857 GATCGCACGCAAGCCATC 59.674 61.111 0.00 0.00 45.62 3.51
212 213 3.173390 GATCGCACGCAAGCCATCC 62.173 63.158 0.00 0.00 45.62 3.51
223 224 4.925861 GCCATCCGCTGCCTCCTC 62.926 72.222 0.00 0.00 0.00 3.71
224 225 3.160047 CCATCCGCTGCCTCCTCT 61.160 66.667 0.00 0.00 0.00 3.69
225 226 1.834378 CCATCCGCTGCCTCCTCTA 60.834 63.158 0.00 0.00 0.00 2.43
226 227 1.190833 CCATCCGCTGCCTCCTCTAT 61.191 60.000 0.00 0.00 0.00 1.98
227 228 0.037512 CATCCGCTGCCTCCTCTATG 60.038 60.000 0.00 0.00 0.00 2.23
228 229 0.470833 ATCCGCTGCCTCCTCTATGT 60.471 55.000 0.00 0.00 0.00 2.29
229 230 1.068753 CCGCTGCCTCCTCTATGTG 59.931 63.158 0.00 0.00 0.00 3.21
230 231 1.395045 CCGCTGCCTCCTCTATGTGA 61.395 60.000 0.00 0.00 0.00 3.58
231 232 0.249238 CGCTGCCTCCTCTATGTGAC 60.249 60.000 0.00 0.00 0.00 3.67
232 233 0.826715 GCTGCCTCCTCTATGTGACA 59.173 55.000 0.00 0.00 0.00 3.58
233 234 1.472376 GCTGCCTCCTCTATGTGACAC 60.472 57.143 0.00 0.00 0.00 3.67
234 235 0.817654 TGCCTCCTCTATGTGACACG 59.182 55.000 0.22 0.00 0.00 4.49
235 236 0.818296 GCCTCCTCTATGTGACACGT 59.182 55.000 5.47 5.47 0.00 4.49
236 237 1.469940 GCCTCCTCTATGTGACACGTG 60.470 57.143 15.48 15.48 0.00 4.49
237 238 1.819288 CCTCCTCTATGTGACACGTGT 59.181 52.381 23.64 23.64 0.00 4.49
238 239 3.014623 CCTCCTCTATGTGACACGTGTA 58.985 50.000 23.44 6.65 0.00 2.90
239 240 3.181499 CCTCCTCTATGTGACACGTGTAC 60.181 52.174 23.44 19.04 0.00 2.90
240 241 3.414269 TCCTCTATGTGACACGTGTACA 58.586 45.455 23.44 23.55 0.00 2.90
241 242 4.014406 TCCTCTATGTGACACGTGTACAT 58.986 43.478 29.38 29.38 38.48 2.29
242 243 4.105486 CCTCTATGTGACACGTGTACATG 58.895 47.826 31.67 25.21 36.52 3.21
243 244 4.380550 CCTCTATGTGACACGTGTACATGT 60.381 45.833 31.67 15.10 36.52 3.21
244 245 5.163693 CCTCTATGTGACACGTGTACATGTA 60.164 44.000 31.67 23.87 36.52 2.29
245 246 6.445357 TCTATGTGACACGTGTACATGTAT 57.555 37.500 31.67 22.57 36.52 2.29
246 247 6.492254 TCTATGTGACACGTGTACATGTATC 58.508 40.000 31.67 18.84 36.52 2.24
247 248 3.840468 TGTGACACGTGTACATGTATCC 58.160 45.455 23.44 13.68 0.00 2.59
248 249 3.508402 TGTGACACGTGTACATGTATCCT 59.492 43.478 23.44 5.53 0.00 3.24
249 250 4.021807 TGTGACACGTGTACATGTATCCTT 60.022 41.667 23.44 4.96 0.00 3.36
250 251 4.561606 GTGACACGTGTACATGTATCCTTC 59.438 45.833 23.44 12.64 0.00 3.46
251 252 3.766151 ACACGTGTACATGTATCCTTCG 58.234 45.455 21.98 8.87 0.00 3.79
252 253 2.534349 CACGTGTACATGTATCCTTCGC 59.466 50.000 20.05 1.53 0.00 4.70
253 254 2.164827 ACGTGTACATGTATCCTTCGCA 59.835 45.455 19.15 0.00 0.00 5.10
254 255 2.534349 CGTGTACATGTATCCTTCGCAC 59.466 50.000 9.18 9.30 0.00 5.34
255 256 2.864343 GTGTACATGTATCCTTCGCACC 59.136 50.000 9.18 0.00 0.00 5.01
256 257 2.764010 TGTACATGTATCCTTCGCACCT 59.236 45.455 9.18 0.00 0.00 4.00
257 258 2.315925 ACATGTATCCTTCGCACCTG 57.684 50.000 0.00 0.00 0.00 4.00
258 259 1.555075 ACATGTATCCTTCGCACCTGT 59.445 47.619 0.00 0.00 0.00 4.00
259 260 2.205074 CATGTATCCTTCGCACCTGTC 58.795 52.381 0.00 0.00 0.00 3.51
260 261 1.557099 TGTATCCTTCGCACCTGTCT 58.443 50.000 0.00 0.00 0.00 3.41
261 262 1.899814 TGTATCCTTCGCACCTGTCTT 59.100 47.619 0.00 0.00 0.00 3.01
262 263 2.301870 TGTATCCTTCGCACCTGTCTTT 59.698 45.455 0.00 0.00 0.00 2.52
263 264 2.568623 ATCCTTCGCACCTGTCTTTT 57.431 45.000 0.00 0.00 0.00 2.27
264 265 1.878953 TCCTTCGCACCTGTCTTTTC 58.121 50.000 0.00 0.00 0.00 2.29
265 266 0.512952 CCTTCGCACCTGTCTTTTCG 59.487 55.000 0.00 0.00 0.00 3.46
266 267 0.110644 CTTCGCACCTGTCTTTTCGC 60.111 55.000 0.00 0.00 0.00 4.70
267 268 0.812014 TTCGCACCTGTCTTTTCGCA 60.812 50.000 0.00 0.00 0.00 5.10
268 269 0.812014 TCGCACCTGTCTTTTCGCAA 60.812 50.000 0.00 0.00 0.00 4.85
269 270 0.657368 CGCACCTGTCTTTTCGCAAC 60.657 55.000 0.00 0.00 0.00 4.17
270 271 0.380378 GCACCTGTCTTTTCGCAACA 59.620 50.000 0.00 0.00 0.00 3.33
271 272 1.001378 GCACCTGTCTTTTCGCAACAT 60.001 47.619 0.00 0.00 0.00 2.71
272 273 2.918131 GCACCTGTCTTTTCGCAACATC 60.918 50.000 0.00 0.00 0.00 3.06
273 274 2.290367 CACCTGTCTTTTCGCAACATCA 59.710 45.455 0.00 0.00 0.00 3.07
274 275 3.058016 CACCTGTCTTTTCGCAACATCAT 60.058 43.478 0.00 0.00 0.00 2.45
275 276 3.058016 ACCTGTCTTTTCGCAACATCATG 60.058 43.478 0.00 0.00 0.00 3.07
276 277 3.058016 CCTGTCTTTTCGCAACATCATGT 60.058 43.478 0.00 0.00 0.00 3.21
277 278 3.887741 TGTCTTTTCGCAACATCATGTG 58.112 40.909 0.00 0.00 0.00 3.21
278 279 3.314913 TGTCTTTTCGCAACATCATGTGT 59.685 39.130 0.00 0.00 44.84 3.72
279 280 3.665409 GTCTTTTCGCAACATCATGTGTG 59.335 43.478 0.00 0.00 41.14 3.82
280 281 3.314913 TCTTTTCGCAACATCATGTGTGT 59.685 39.130 0.00 0.00 41.14 3.72
281 282 3.706802 TTTCGCAACATCATGTGTGTT 57.293 38.095 11.64 11.64 41.14 3.32
288 289 4.824301 CAACATCATGTGTGTTGCAAAAC 58.176 39.130 23.48 13.13 46.64 2.43
289 290 4.389890 ACATCATGTGTGTTGCAAAACT 57.610 36.364 20.26 0.00 40.28 2.66
290 291 4.114073 ACATCATGTGTGTTGCAAAACTG 58.886 39.130 20.26 10.75 40.28 3.16
291 292 3.865011 TCATGTGTGTTGCAAAACTGT 57.135 38.095 20.26 4.05 0.00 3.55
292 293 3.768406 TCATGTGTGTTGCAAAACTGTC 58.232 40.909 20.26 11.19 0.00 3.51
293 294 3.443329 TCATGTGTGTTGCAAAACTGTCT 59.557 39.130 20.26 0.65 0.00 3.41
294 295 3.932545 TGTGTGTTGCAAAACTGTCTT 57.067 38.095 20.26 0.00 0.00 3.01
295 296 3.832276 TGTGTGTTGCAAAACTGTCTTC 58.168 40.909 20.26 5.33 0.00 2.87
296 297 3.179048 GTGTGTTGCAAAACTGTCTTCC 58.821 45.455 20.26 0.00 0.00 3.46
297 298 2.159448 TGTGTTGCAAAACTGTCTTCCG 60.159 45.455 20.26 0.00 0.00 4.30
298 299 1.202245 TGTTGCAAAACTGTCTTCCGC 60.202 47.619 0.00 0.00 0.00 5.54
299 300 1.098869 TTGCAAAACTGTCTTCCGCA 58.901 45.000 0.00 0.00 0.00 5.69
300 301 1.098869 TGCAAAACTGTCTTCCGCAA 58.901 45.000 0.00 0.00 0.00 4.85
301 302 1.202245 TGCAAAACTGTCTTCCGCAAC 60.202 47.619 0.00 0.00 0.00 4.17
302 303 1.202245 GCAAAACTGTCTTCCGCAACA 60.202 47.619 0.00 0.00 0.00 3.33
303 304 2.733858 GCAAAACTGTCTTCCGCAACAA 60.734 45.455 0.00 0.00 0.00 2.83
304 305 2.844122 AAACTGTCTTCCGCAACAAC 57.156 45.000 0.00 0.00 0.00 3.32
305 306 1.745232 AACTGTCTTCCGCAACAACA 58.255 45.000 0.00 0.00 0.00 3.33
306 307 1.014352 ACTGTCTTCCGCAACAACAC 58.986 50.000 0.00 0.00 0.00 3.32
307 308 0.307760 CTGTCTTCCGCAACAACACC 59.692 55.000 0.00 0.00 0.00 4.16
308 309 0.107410 TGTCTTCCGCAACAACACCT 60.107 50.000 0.00 0.00 0.00 4.00
309 310 1.139256 TGTCTTCCGCAACAACACCTA 59.861 47.619 0.00 0.00 0.00 3.08
310 311 2.224426 TGTCTTCCGCAACAACACCTAT 60.224 45.455 0.00 0.00 0.00 2.57
311 312 2.159627 GTCTTCCGCAACAACACCTATG 59.840 50.000 0.00 0.00 0.00 2.23
312 313 2.151202 CTTCCGCAACAACACCTATGT 58.849 47.619 0.00 0.00 42.46 2.29
387 388 9.577110 ACAAATATTTCTGCAACATTGTCTATG 57.423 29.630 0.00 0.00 40.26 2.23
398 399 4.985413 ACATTGTCTATGTTGCGATTTGG 58.015 39.130 0.00 0.00 45.19 3.28
399 400 4.458989 ACATTGTCTATGTTGCGATTTGGT 59.541 37.500 0.00 0.00 45.19 3.67
400 401 5.048083 ACATTGTCTATGTTGCGATTTGGTT 60.048 36.000 0.00 0.00 45.19 3.67
401 402 5.446143 TTGTCTATGTTGCGATTTGGTTT 57.554 34.783 0.00 0.00 0.00 3.27
402 403 5.041951 TGTCTATGTTGCGATTTGGTTTC 57.958 39.130 0.00 0.00 0.00 2.78
403 404 4.083003 TGTCTATGTTGCGATTTGGTTTCC 60.083 41.667 0.00 0.00 0.00 3.13
404 405 2.346099 ATGTTGCGATTTGGTTTCCG 57.654 45.000 0.00 0.00 0.00 4.30
405 406 0.318275 TGTTGCGATTTGGTTTCCGC 60.318 50.000 0.00 0.00 46.82 5.54
406 407 1.006825 GTTGCGATTTGGTTTCCGCC 61.007 55.000 0.00 0.00 46.18 6.13
407 408 2.202427 GCGATTTGGTTTCCGCCG 60.202 61.111 0.00 0.00 41.59 6.46
408 409 2.202427 CGATTTGGTTTCCGCCGC 60.202 61.111 0.00 0.00 0.00 6.53
409 410 2.958576 GATTTGGTTTCCGCCGCA 59.041 55.556 0.00 0.00 0.00 5.69
410 411 1.287503 GATTTGGTTTCCGCCGCAA 59.712 52.632 0.00 0.00 0.00 4.85
411 412 1.006688 ATTTGGTTTCCGCCGCAAC 60.007 52.632 0.00 0.00 0.00 4.17
412 413 1.739338 ATTTGGTTTCCGCCGCAACA 61.739 50.000 0.00 0.00 0.00 3.33
413 414 1.945354 TTTGGTTTCCGCCGCAACAA 61.945 50.000 0.00 0.00 0.00 2.83
414 415 1.739338 TTGGTTTCCGCCGCAACAAT 61.739 50.000 0.00 0.00 0.00 2.71
415 416 0.889638 TGGTTTCCGCCGCAACAATA 60.890 50.000 0.00 0.00 0.00 1.90
416 417 0.455464 GGTTTCCGCCGCAACAATAC 60.455 55.000 0.00 0.00 0.00 1.89
417 418 0.455464 GTTTCCGCCGCAACAATACC 60.455 55.000 0.00 0.00 0.00 2.73
418 419 1.587933 TTTCCGCCGCAACAATACCC 61.588 55.000 0.00 0.00 0.00 3.69
419 420 2.748251 CCGCCGCAACAATACCCA 60.748 61.111 0.00 0.00 0.00 4.51
420 421 2.118404 CCGCCGCAACAATACCCAT 61.118 57.895 0.00 0.00 0.00 4.00
421 422 1.063972 CGCCGCAACAATACCCATG 59.936 57.895 0.00 0.00 0.00 3.66
422 423 1.653094 CGCCGCAACAATACCCATGT 61.653 55.000 0.00 0.00 0.00 3.21
423 424 0.530288 GCCGCAACAATACCCATGTT 59.470 50.000 0.00 0.00 41.50 2.71
432 433 5.028549 ACAATACCCATGTTGCAAAAACA 57.971 34.783 0.00 0.00 30.35 2.83
433 434 5.055812 ACAATACCCATGTTGCAAAAACAG 58.944 37.500 0.00 0.00 33.18 3.16
434 435 4.953940 ATACCCATGTTGCAAAAACAGT 57.046 36.364 0.00 0.00 33.18 3.55
435 436 2.903798 ACCCATGTTGCAAAAACAGTG 58.096 42.857 0.00 0.00 33.18 3.66
436 437 2.499289 ACCCATGTTGCAAAAACAGTGA 59.501 40.909 0.00 0.00 33.18 3.41
437 438 3.134442 ACCCATGTTGCAAAAACAGTGAT 59.866 39.130 0.00 0.00 33.18 3.06
438 439 3.495377 CCCATGTTGCAAAAACAGTGATG 59.505 43.478 0.00 0.00 33.18 3.07
439 440 4.370049 CCATGTTGCAAAAACAGTGATGA 58.630 39.130 0.00 0.00 33.18 2.92
440 441 4.809958 CCATGTTGCAAAAACAGTGATGAA 59.190 37.500 0.00 0.00 33.18 2.57
441 442 5.293814 CCATGTTGCAAAAACAGTGATGAAA 59.706 36.000 0.00 0.00 33.18 2.69
442 443 6.183360 CCATGTTGCAAAAACAGTGATGAAAA 60.183 34.615 0.00 0.00 33.18 2.29
443 444 6.791887 TGTTGCAAAAACAGTGATGAAAAA 57.208 29.167 0.00 0.00 0.00 1.94
496 497 8.504812 AAAAATTCTGCAACATAACCTTTGTT 57.495 26.923 0.00 0.00 37.79 2.83
505 506 7.945033 CAACATAACCTTTGTTGCAAAGTAT 57.055 32.000 17.06 8.92 45.10 2.12
506 507 8.364129 CAACATAACCTTTGTTGCAAAGTATT 57.636 30.769 17.06 13.66 45.10 1.89
507 508 8.825745 CAACATAACCTTTGTTGCAAAGTATTT 58.174 29.630 17.06 11.00 45.10 1.40
508 509 8.587952 ACATAACCTTTGTTGCAAAGTATTTC 57.412 30.769 17.06 0.00 33.86 2.17
509 510 8.421002 ACATAACCTTTGTTGCAAAGTATTTCT 58.579 29.630 17.06 2.32 33.86 2.52
510 511 8.702438 CATAACCTTTGTTGCAAAGTATTTCTG 58.298 33.333 17.06 8.66 33.86 3.02
511 512 5.049828 ACCTTTGTTGCAAAGTATTTCTGC 58.950 37.500 17.06 0.00 35.03 4.26
512 513 5.049167 CCTTTGTTGCAAAGTATTTCTGCA 58.951 37.500 17.06 0.00 35.03 4.41
513 514 5.523188 CCTTTGTTGCAAAGTATTTCTGCAA 59.477 36.000 17.06 12.85 42.35 4.08
518 519 6.528014 TTGCAAAGTATTTCTGCAACAATG 57.472 33.333 0.00 0.00 40.56 2.82
519 520 4.448395 TGCAAAGTATTTCTGCAACAATGC 59.552 37.500 7.96 7.96 45.27 3.56
520 521 4.143052 GCAAAGTATTTCTGCAACAATGCC 60.143 41.667 0.00 0.00 44.71 4.40
521 522 4.389687 CAAAGTATTTCTGCAACAATGCCC 59.610 41.667 0.00 0.00 44.71 5.36
522 523 4.284234 AAAGTATTTCTGCAACAATGCCCT 59.716 37.500 0.00 0.00 43.63 5.19
523 524 5.221702 AAAGTATTTCTGCAACAATGCCCTT 60.222 36.000 0.00 0.00 43.63 3.95
524 525 7.236984 AAAGTATTTCTGCAACAATGCCCTTG 61.237 38.462 0.00 0.00 43.63 3.61
525 526 9.523974 AAAGTATTTCTGCAACAATGCCCTTGT 62.524 37.037 0.00 0.00 43.63 3.16
534 535 4.556592 ACAATGCCCTTGTTGCAATAAT 57.443 36.364 9.20 0.00 45.98 1.28
535 536 4.255301 ACAATGCCCTTGTTGCAATAATG 58.745 39.130 9.20 6.65 45.98 1.90
536 537 4.020396 ACAATGCCCTTGTTGCAATAATGA 60.020 37.500 9.20 0.00 45.98 2.57
537 538 3.872511 TGCCCTTGTTGCAATAATGAG 57.127 42.857 9.20 2.84 35.40 2.90
538 539 3.429492 TGCCCTTGTTGCAATAATGAGA 58.571 40.909 9.20 0.00 35.40 3.27
539 540 3.831333 TGCCCTTGTTGCAATAATGAGAA 59.169 39.130 9.20 0.00 35.40 2.87
540 541 4.176271 GCCCTTGTTGCAATAATGAGAAC 58.824 43.478 9.20 0.00 0.00 3.01
541 542 4.321899 GCCCTTGTTGCAATAATGAGAACA 60.322 41.667 9.20 0.00 32.02 3.18
542 543 5.404946 CCCTTGTTGCAATAATGAGAACAG 58.595 41.667 9.20 0.00 34.13 3.16
543 544 5.047802 CCCTTGTTGCAATAATGAGAACAGT 60.048 40.000 9.20 0.00 34.13 3.55
544 545 5.860182 CCTTGTTGCAATAATGAGAACAGTG 59.140 40.000 9.20 0.00 34.13 3.66
545 546 6.389830 TTGTTGCAATAATGAGAACAGTGT 57.610 33.333 0.59 0.00 34.13 3.55
546 547 6.389830 TGTTGCAATAATGAGAACAGTGTT 57.610 33.333 8.61 8.61 30.99 3.32
547 548 7.503521 TGTTGCAATAATGAGAACAGTGTTA 57.496 32.000 8.88 0.00 30.99 2.41
548 549 7.584108 TGTTGCAATAATGAGAACAGTGTTAG 58.416 34.615 8.88 0.00 30.99 2.34
549 550 7.443879 TGTTGCAATAATGAGAACAGTGTTAGA 59.556 33.333 8.88 0.00 30.99 2.10
550 551 8.454106 GTTGCAATAATGAGAACAGTGTTAGAT 58.546 33.333 8.88 0.00 0.00 1.98
551 552 7.977904 TGCAATAATGAGAACAGTGTTAGATG 58.022 34.615 8.88 1.75 0.00 2.90
552 553 6.909357 GCAATAATGAGAACAGTGTTAGATGC 59.091 38.462 8.88 7.66 0.00 3.91
553 554 7.201679 GCAATAATGAGAACAGTGTTAGATGCT 60.202 37.037 8.88 0.75 0.00 3.79
554 555 7.783090 ATAATGAGAACAGTGTTAGATGCTG 57.217 36.000 8.88 0.00 36.41 4.41
555 556 3.930336 TGAGAACAGTGTTAGATGCTGG 58.070 45.455 8.88 0.00 34.79 4.85
556 557 3.578282 TGAGAACAGTGTTAGATGCTGGA 59.422 43.478 8.88 0.00 34.79 3.86
557 558 4.223700 TGAGAACAGTGTTAGATGCTGGAT 59.776 41.667 8.88 0.00 34.79 3.41
558 559 5.422012 TGAGAACAGTGTTAGATGCTGGATA 59.578 40.000 8.88 0.00 34.79 2.59
559 560 5.665459 AGAACAGTGTTAGATGCTGGATAC 58.335 41.667 8.88 0.00 34.79 2.24
560 561 4.408182 ACAGTGTTAGATGCTGGATACC 57.592 45.455 0.00 0.00 34.79 2.73
561 562 4.033709 ACAGTGTTAGATGCTGGATACCT 58.966 43.478 0.00 0.00 34.79 3.08
562 563 4.141846 ACAGTGTTAGATGCTGGATACCTG 60.142 45.833 0.00 0.00 34.79 4.00
563 564 4.033709 AGTGTTAGATGCTGGATACCTGT 58.966 43.478 0.00 0.00 0.00 4.00
564 565 5.069119 CAGTGTTAGATGCTGGATACCTGTA 59.931 44.000 0.00 0.00 0.00 2.74
565 566 5.069251 AGTGTTAGATGCTGGATACCTGTAC 59.931 44.000 0.00 0.00 0.00 2.90
566 567 4.959839 TGTTAGATGCTGGATACCTGTACA 59.040 41.667 0.00 0.00 0.00 2.90
567 568 5.423931 TGTTAGATGCTGGATACCTGTACAA 59.576 40.000 0.00 0.00 0.00 2.41
568 569 6.070481 TGTTAGATGCTGGATACCTGTACAAA 60.070 38.462 0.00 0.00 0.00 2.83
569 570 5.636903 AGATGCTGGATACCTGTACAAAT 57.363 39.130 0.00 0.00 0.00 2.32
570 571 6.747414 AGATGCTGGATACCTGTACAAATA 57.253 37.500 0.00 0.00 0.00 1.40
571 572 7.136822 AGATGCTGGATACCTGTACAAATAA 57.863 36.000 0.00 0.00 0.00 1.40
572 573 6.992715 AGATGCTGGATACCTGTACAAATAAC 59.007 38.462 0.00 0.00 0.00 1.89
573 574 6.056090 TGCTGGATACCTGTACAAATAACA 57.944 37.500 0.00 0.00 0.00 2.41
574 575 6.112734 TGCTGGATACCTGTACAAATAACAG 58.887 40.000 0.00 6.83 43.26 3.16
575 576 6.113411 GCTGGATACCTGTACAAATAACAGT 58.887 40.000 0.00 0.00 42.30 3.55
576 577 6.598064 GCTGGATACCTGTACAAATAACAGTT 59.402 38.462 0.00 0.00 42.30 3.16
577 578 7.414098 GCTGGATACCTGTACAAATAACAGTTG 60.414 40.741 0.00 0.00 42.30 3.16
578 579 6.373216 TGGATACCTGTACAAATAACAGTTGC 59.627 38.462 0.00 0.00 42.30 4.17
579 580 6.183360 GGATACCTGTACAAATAACAGTTGCC 60.183 42.308 0.00 0.00 42.30 4.52
580 581 3.500680 ACCTGTACAAATAACAGTTGCCG 59.499 43.478 0.00 0.00 42.30 5.69
581 582 3.749088 CCTGTACAAATAACAGTTGCCGA 59.251 43.478 0.00 0.00 42.30 5.54
582 583 4.142902 CCTGTACAAATAACAGTTGCCGAG 60.143 45.833 0.00 0.00 42.30 4.63
583 584 3.749088 TGTACAAATAACAGTTGCCGAGG 59.251 43.478 0.00 0.00 0.00 4.63
584 585 1.539827 ACAAATAACAGTTGCCGAGGC 59.460 47.619 7.26 7.26 42.35 4.70
585 586 0.802494 AAATAACAGTTGCCGAGGCG 59.198 50.000 9.78 0.00 45.51 5.52
595 596 2.511600 CCGAGGCGGCGAATCTTT 60.512 61.111 12.98 0.00 41.17 2.52
596 597 2.106683 CCGAGGCGGCGAATCTTTT 61.107 57.895 12.98 0.00 41.17 2.27
597 598 0.808453 CCGAGGCGGCGAATCTTTTA 60.808 55.000 12.98 0.00 41.17 1.52
598 599 0.577269 CGAGGCGGCGAATCTTTTAG 59.423 55.000 12.98 0.00 0.00 1.85
599 600 1.801395 CGAGGCGGCGAATCTTTTAGA 60.801 52.381 12.98 0.00 0.00 2.10
600 601 2.277084 GAGGCGGCGAATCTTTTAGAA 58.723 47.619 12.98 0.00 0.00 2.10
601 602 2.676342 GAGGCGGCGAATCTTTTAGAAA 59.324 45.455 12.98 0.00 0.00 2.52
602 603 3.078837 AGGCGGCGAATCTTTTAGAAAA 58.921 40.909 12.98 0.00 0.00 2.29
603 604 3.504520 AGGCGGCGAATCTTTTAGAAAAA 59.495 39.130 12.98 0.00 0.00 1.94
604 605 4.157840 AGGCGGCGAATCTTTTAGAAAAAT 59.842 37.500 12.98 0.00 0.00 1.82
605 606 4.499399 GGCGGCGAATCTTTTAGAAAAATC 59.501 41.667 12.98 0.00 0.00 2.17
606 607 4.499399 GCGGCGAATCTTTTAGAAAAATCC 59.501 41.667 12.98 0.00 0.00 3.01
607 608 4.728608 CGGCGAATCTTTTAGAAAAATCCG 59.271 41.667 0.00 0.00 0.00 4.18
608 609 4.499399 GGCGAATCTTTTAGAAAAATCCGC 59.501 41.667 0.00 0.00 34.70 5.54
609 610 4.499399 GCGAATCTTTTAGAAAAATCCGCC 59.501 41.667 0.00 0.00 32.11 6.13
610 611 4.728608 CGAATCTTTTAGAAAAATCCGCCG 59.271 41.667 0.00 0.00 0.00 6.46
611 612 4.632538 ATCTTTTAGAAAAATCCGCCGG 57.367 40.909 0.00 0.00 0.00 6.13
612 613 2.162809 TCTTTTAGAAAAATCCGCCGGC 59.837 45.455 19.07 19.07 0.00 6.13
613 614 0.812549 TTTAGAAAAATCCGCCGGCC 59.187 50.000 23.46 3.47 0.00 6.13
614 615 1.370587 TTAGAAAAATCCGCCGGCCG 61.371 55.000 23.46 21.04 0.00 6.13
615 616 2.241479 TAGAAAAATCCGCCGGCCGA 62.241 55.000 30.73 21.48 40.02 5.54
616 617 3.391160 GAAAAATCCGCCGGCCGAC 62.391 63.158 30.73 16.23 40.02 4.79
637 638 0.589223 CGTAGCGTGGCCAAAGAAAA 59.411 50.000 7.24 0.00 0.00 2.29
668 669 2.474410 AATCCGGTTCAGTGAAGGTC 57.526 50.000 5.62 0.00 0.00 3.85
679 680 0.173708 GTGAAGGTCCTAGACAGCGG 59.826 60.000 0.00 0.00 33.68 5.52
681 682 2.299503 GAAGGTCCTAGACAGCGGCC 62.300 65.000 0.00 0.00 33.68 6.13
704 705 3.521605 GCCAAATAGGAACGGCCC 58.478 61.111 0.00 0.00 41.22 5.80
731 732 4.563580 CGCATGGCCTACCTTAGAATATGT 60.564 45.833 3.32 0.00 36.63 2.29
732 733 5.316987 GCATGGCCTACCTTAGAATATGTT 58.683 41.667 3.32 0.00 36.63 2.71
767 768 4.489306 AGCCTACCTTAGAATGGTGAAC 57.511 45.455 0.00 0.00 38.42 3.18
849 855 2.431942 AGTTCGCCCGTTAGCACG 60.432 61.111 0.00 0.00 46.71 5.34
859 865 2.572191 CGTTAGCACGGAACTATCCA 57.428 50.000 0.00 0.00 46.97 3.41
860 866 2.190981 CGTTAGCACGGAACTATCCAC 58.809 52.381 0.00 0.00 46.97 4.02
861 867 2.547826 GTTAGCACGGAACTATCCACC 58.452 52.381 0.00 0.00 46.97 4.61
862 868 0.742505 TAGCACGGAACTATCCACCG 59.257 55.000 0.00 0.00 46.97 4.94
950 958 4.052229 CCGTGCCCTTCTCGTCGT 62.052 66.667 0.00 0.00 0.00 4.34
955 963 2.572284 CCCTTCTCGTCGTCACCC 59.428 66.667 0.00 0.00 0.00 4.61
1093 1101 0.180406 TTTCGATTCCCCTAGCTGGC 59.820 55.000 0.00 0.00 0.00 4.85
1139 1147 2.183046 GAGCTCCTGACTCACGGC 59.817 66.667 0.87 0.00 34.18 5.68
1331 1339 0.250597 TCCTCGAGGACGTCACTGAA 60.251 55.000 30.49 3.84 39.78 3.02
1393 1401 0.105593 AGATCGATGCGCATCAGGTT 59.894 50.000 40.42 25.48 37.69 3.50
1488 1498 6.951971 AGCTCACCTAGTTATGACTTGAATT 58.048 36.000 0.00 0.00 37.33 2.17
1535 1545 2.651701 CGTCACATATCTGACCGTAGC 58.348 52.381 5.64 0.00 37.83 3.58
1602 1676 2.756829 TCACGCCAATTAACGAACTGA 58.243 42.857 6.31 0.00 0.00 3.41
1603 1677 2.734606 TCACGCCAATTAACGAACTGAG 59.265 45.455 6.31 0.00 0.00 3.35
1646 1720 2.047179 GTCCTGGGCTCGTTGGAC 60.047 66.667 7.35 7.35 41.52 4.02
1924 2097 5.163395 GGGAGGGAGTTGTCTACTTAGAATG 60.163 48.000 0.00 0.00 37.17 2.67
1944 2117 8.884124 AGAATGGAAACTGATATTCCTTTTCA 57.116 30.769 16.49 0.00 45.40 2.69
1987 2160 4.081365 TCCACGGATGTTGTGCTAATTCTA 60.081 41.667 0.00 0.00 36.01 2.10
2000 2173 5.523916 GTGCTAATTCTACCGTTCATGTCAT 59.476 40.000 0.00 0.00 0.00 3.06
2015 2188 4.278419 TCATGTCATACTAGTCCACGGATG 59.722 45.833 0.00 0.00 0.00 3.51
2030 2203 4.487948 CACGGATGATGCAGTGAATTTTT 58.512 39.130 0.00 0.00 36.29 1.94
2134 2308 7.905031 GCAGCTGCAGAAGTAAATAAAATAG 57.095 36.000 33.36 0.00 41.59 1.73
2142 2316 9.443283 GCAGAAGTAAATAAAATAGCATGACTG 57.557 33.333 0.00 0.00 0.00 3.51
2162 2336 9.890629 ATGACTGTTAGTATTTTATGAAGCTCA 57.109 29.630 0.00 0.00 0.00 4.26
2173 2347 6.668541 TTTATGAAGCTCAGAAGGAAATCG 57.331 37.500 0.00 0.00 28.62 3.34
2197 2371 0.319211 TAGACCCAGTTTCGTGTGCG 60.319 55.000 0.00 0.00 39.92 5.34
2276 2450 7.309012 CGAAATGCTGGATATTGATGGATCTTT 60.309 37.037 0.00 0.00 0.00 2.52
2367 2541 8.709646 ACTTCAAAATGATGTTTACGAGTAGTC 58.290 33.333 0.00 0.00 31.72 2.59
2381 2555 3.740115 GAGTAGTCCTTTGTTGGCTTCA 58.260 45.455 0.00 0.00 0.00 3.02
2574 2749 8.647143 AAGAATTTACATTCAAACACCAACAG 57.353 30.769 4.50 0.00 41.37 3.16
2622 2797 7.945033 TCAGGCTGATAACATTTTTGTTTTC 57.055 32.000 14.43 0.21 33.59 2.29
2705 2880 2.103094 TGGAGGATATCTGTTTGAGGCG 59.897 50.000 2.05 0.00 0.00 5.52
2710 2885 4.080863 AGGATATCTGTTTGAGGCGAAACT 60.081 41.667 13.86 0.72 36.86 2.66
2728 2903 0.179161 CTAGACGCGGTGAAGTCTGG 60.179 60.000 12.47 0.44 46.07 3.86
2740 2915 3.437049 GTGAAGTCTGGACCTTGTATTGC 59.563 47.826 0.00 0.00 0.00 3.56
2786 2961 5.412594 GTCAAATGTGCTTTCCTCTGTATGA 59.587 40.000 0.00 0.00 0.00 2.15
2787 2962 6.094603 GTCAAATGTGCTTTCCTCTGTATGAT 59.905 38.462 0.00 0.00 0.00 2.45
2788 2963 6.094464 TCAAATGTGCTTTCCTCTGTATGATG 59.906 38.462 0.00 0.00 0.00 3.07
2799 2974 4.039730 CCTCTGTATGATGGAACCTACTGG 59.960 50.000 0.00 0.00 39.83 4.00
2840 3015 4.329801 CGATTGCTGCACTTGTATGACTTA 59.670 41.667 0.00 0.00 0.00 2.24
2911 3087 3.438216 TCATTCTGCAATGTTCCTCCA 57.562 42.857 0.00 0.00 40.47 3.86
2951 3130 6.910290 TGGGGTTACTGAAATTATAGGTAGGT 59.090 38.462 0.00 0.00 0.00 3.08
3102 3282 8.031864 TCAATACAAAACAGTGAACAAACACAT 58.968 29.630 0.00 0.00 42.45 3.21
3107 3304 9.213799 ACAAAACAGTGAACAAACACATTATTT 57.786 25.926 0.00 0.00 42.45 1.40
3226 3601 4.099824 GGGTGAACAAACACACTAAAACG 58.900 43.478 0.00 0.00 40.56 3.60
3241 3616 8.492748 CACACTAAAACGTGTTTATGTACATCT 58.507 33.333 12.68 0.00 45.27 2.90
3265 3640 8.514594 TCTGATTCACAATAAAGTTGGAACATC 58.485 33.333 0.00 0.00 39.30 3.06
3369 3744 9.898806 CATTTAATAATGCATTTACAAACGGTG 57.101 29.630 18.75 7.02 35.15 4.94
3460 3836 7.547227 TGCTTTCCTTATTTTTCTAATGAGCC 58.453 34.615 0.00 0.00 0.00 4.70
3481 3857 5.047188 GCCTGCAGTTTAAAGCTACAAAAA 58.953 37.500 13.81 0.00 0.00 1.94
3483 3859 6.866248 GCCTGCAGTTTAAAGCTACAAAAATA 59.134 34.615 13.81 0.00 0.00 1.40
3609 4017 0.600255 CTGAACCAGAAGTCGCGGTT 60.600 55.000 6.13 0.00 45.64 4.44
3630 4038 3.468770 TGAGTAGCTCCGAGTAGATGAC 58.531 50.000 0.00 0.00 0.00 3.06
3640 4048 2.809119 CGAGTAGATGACGCCAGATACT 59.191 50.000 0.00 0.00 33.06 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.880750 CCATTTTCCATTTTTGCAAACATTTTT 58.119 25.926 12.39 0.00 0.00 1.94
5 6 8.255905 TCCATTTTCCATTTTTGCAAACATTTT 58.744 25.926 12.39 0.00 0.00 1.82
6 7 7.779073 TCCATTTTCCATTTTTGCAAACATTT 58.221 26.923 12.39 0.00 0.00 2.32
7 8 7.344095 TCCATTTTCCATTTTTGCAAACATT 57.656 28.000 12.39 0.00 0.00 2.71
8 9 6.956202 TCCATTTTCCATTTTTGCAAACAT 57.044 29.167 12.39 8.35 0.00 2.71
9 10 6.764308 TTCCATTTTCCATTTTTGCAAACA 57.236 29.167 12.39 5.81 0.00 2.83
10 11 8.541312 CATTTTCCATTTTCCATTTTTGCAAAC 58.459 29.630 12.39 0.00 0.00 2.93
11 12 8.472413 TCATTTTCCATTTTCCATTTTTGCAAA 58.528 25.926 8.05 8.05 0.00 3.68
12 13 8.004087 TCATTTTCCATTTTCCATTTTTGCAA 57.996 26.923 0.00 0.00 0.00 4.08
13 14 7.578310 TCATTTTCCATTTTCCATTTTTGCA 57.422 28.000 0.00 0.00 0.00 4.08
14 15 8.868635 TTTCATTTTCCATTTTCCATTTTTGC 57.131 26.923 0.00 0.00 0.00 3.68
99 100 9.612066 TCTGGATTTTTGCTTTTTCTTTTATGT 57.388 25.926 0.00 0.00 0.00 2.29
171 172 2.806818 GTCGGGTGAAGGAAAGAGTTTC 59.193 50.000 0.00 0.00 38.94 2.78
172 173 2.805657 CGTCGGGTGAAGGAAAGAGTTT 60.806 50.000 0.00 0.00 0.00 2.66
173 174 1.270147 CGTCGGGTGAAGGAAAGAGTT 60.270 52.381 0.00 0.00 0.00 3.01
174 175 0.317479 CGTCGGGTGAAGGAAAGAGT 59.683 55.000 0.00 0.00 0.00 3.24
175 176 0.389948 CCGTCGGGTGAAGGAAAGAG 60.390 60.000 2.34 0.00 45.55 2.85
176 177 1.669440 CCGTCGGGTGAAGGAAAGA 59.331 57.895 2.34 0.00 45.55 2.52
177 178 4.278956 CCGTCGGGTGAAGGAAAG 57.721 61.111 2.34 0.00 45.55 2.62
181 182 2.104331 CGATCCGTCGGGTGAAGG 59.896 66.667 12.29 0.00 44.00 3.46
190 191 4.210304 GCTTGCGTGCGATCCGTC 62.210 66.667 0.00 0.00 0.00 4.79
193 194 3.173390 GATGGCTTGCGTGCGATCC 62.173 63.158 12.40 0.00 40.63 3.36
194 195 2.325857 GATGGCTTGCGTGCGATC 59.674 61.111 9.22 9.22 40.01 3.69
195 196 3.204827 GGATGGCTTGCGTGCGAT 61.205 61.111 0.00 0.00 34.18 4.58
207 208 1.190833 ATAGAGGAGGCAGCGGATGG 61.191 60.000 0.00 0.00 0.00 3.51
208 209 0.037512 CATAGAGGAGGCAGCGGATG 60.038 60.000 0.00 0.00 0.00 3.51
209 210 0.470833 ACATAGAGGAGGCAGCGGAT 60.471 55.000 0.00 0.00 0.00 4.18
210 211 1.075970 ACATAGAGGAGGCAGCGGA 60.076 57.895 0.00 0.00 0.00 5.54
211 212 1.068753 CACATAGAGGAGGCAGCGG 59.931 63.158 0.00 0.00 0.00 5.52
212 213 0.249238 GTCACATAGAGGAGGCAGCG 60.249 60.000 0.00 0.00 0.00 5.18
213 214 0.826715 TGTCACATAGAGGAGGCAGC 59.173 55.000 0.00 0.00 0.00 5.25
214 215 1.202348 CGTGTCACATAGAGGAGGCAG 60.202 57.143 3.42 0.00 0.00 4.85
215 216 0.817654 CGTGTCACATAGAGGAGGCA 59.182 55.000 3.42 0.00 0.00 4.75
216 217 0.818296 ACGTGTCACATAGAGGAGGC 59.182 55.000 3.42 0.00 0.00 4.70
217 218 1.819288 ACACGTGTCACATAGAGGAGG 59.181 52.381 17.22 0.00 0.00 4.30
218 219 3.439129 TGTACACGTGTCACATAGAGGAG 59.561 47.826 27.16 0.00 0.00 3.69
219 220 3.414269 TGTACACGTGTCACATAGAGGA 58.586 45.455 27.16 0.00 0.00 3.71
220 221 3.842732 TGTACACGTGTCACATAGAGG 57.157 47.619 27.16 0.00 0.00 3.69
221 222 4.733850 ACATGTACACGTGTCACATAGAG 58.266 43.478 27.16 19.76 41.94 2.43
222 223 4.776795 ACATGTACACGTGTCACATAGA 57.223 40.909 27.16 6.03 41.94 1.98
223 224 5.685954 GGATACATGTACACGTGTCACATAG 59.314 44.000 27.16 23.02 44.29 2.23
224 225 5.358725 AGGATACATGTACACGTGTCACATA 59.641 40.000 27.16 17.19 44.29 2.29
225 226 4.159693 AGGATACATGTACACGTGTCACAT 59.840 41.667 27.16 25.82 44.29 3.21
226 227 3.508402 AGGATACATGTACACGTGTCACA 59.492 43.478 27.16 24.87 44.29 3.58
227 228 4.106029 AGGATACATGTACACGTGTCAC 57.894 45.455 27.16 20.42 44.29 3.67
228 229 4.673320 CGAAGGATACATGTACACGTGTCA 60.673 45.833 27.16 21.89 44.29 3.58
229 230 3.789756 CGAAGGATACATGTACACGTGTC 59.210 47.826 27.16 16.93 44.29 3.67
230 231 3.766151 CGAAGGATACATGTACACGTGT 58.234 45.455 26.52 26.52 46.74 4.49
231 232 2.534349 GCGAAGGATACATGTACACGTG 59.466 50.000 15.48 15.48 41.41 4.49
232 233 2.164827 TGCGAAGGATACATGTACACGT 59.835 45.455 7.96 0.00 41.41 4.49
233 234 2.534349 GTGCGAAGGATACATGTACACG 59.466 50.000 7.96 10.41 41.41 4.49
234 235 2.864343 GGTGCGAAGGATACATGTACAC 59.136 50.000 7.96 9.55 41.41 2.90
235 236 2.764010 AGGTGCGAAGGATACATGTACA 59.236 45.455 7.96 0.00 41.41 2.90
236 237 3.123804 CAGGTGCGAAGGATACATGTAC 58.876 50.000 7.96 2.44 41.41 2.90
237 238 2.764010 ACAGGTGCGAAGGATACATGTA 59.236 45.455 8.27 8.27 37.54 2.29
238 239 1.555075 ACAGGTGCGAAGGATACATGT 59.445 47.619 2.69 2.69 34.89 3.21
239 240 2.159043 AGACAGGTGCGAAGGATACATG 60.159 50.000 0.00 0.00 41.41 3.21
240 241 2.111384 AGACAGGTGCGAAGGATACAT 58.889 47.619 0.00 0.00 41.41 2.29
241 242 1.557099 AGACAGGTGCGAAGGATACA 58.443 50.000 0.00 0.00 41.41 2.29
242 243 2.674796 AAGACAGGTGCGAAGGATAC 57.325 50.000 0.00 0.00 0.00 2.24
243 244 3.596214 GAAAAGACAGGTGCGAAGGATA 58.404 45.455 0.00 0.00 0.00 2.59
244 245 2.427506 GAAAAGACAGGTGCGAAGGAT 58.572 47.619 0.00 0.00 0.00 3.24
245 246 1.872237 CGAAAAGACAGGTGCGAAGGA 60.872 52.381 0.00 0.00 0.00 3.36
246 247 0.512952 CGAAAAGACAGGTGCGAAGG 59.487 55.000 0.00 0.00 0.00 3.46
247 248 0.110644 GCGAAAAGACAGGTGCGAAG 60.111 55.000 0.00 0.00 0.00 3.79
248 249 0.812014 TGCGAAAAGACAGGTGCGAA 60.812 50.000 0.00 0.00 0.00 4.70
249 250 0.812014 TTGCGAAAAGACAGGTGCGA 60.812 50.000 0.00 0.00 0.00 5.10
250 251 0.657368 GTTGCGAAAAGACAGGTGCG 60.657 55.000 0.00 0.00 0.00 5.34
251 252 0.380378 TGTTGCGAAAAGACAGGTGC 59.620 50.000 0.00 0.00 0.00 5.01
252 253 2.290367 TGATGTTGCGAAAAGACAGGTG 59.710 45.455 0.00 0.00 0.00 4.00
253 254 2.571212 TGATGTTGCGAAAAGACAGGT 58.429 42.857 0.00 0.00 0.00 4.00
254 255 3.058016 ACATGATGTTGCGAAAAGACAGG 60.058 43.478 0.00 0.00 0.00 4.00
255 256 3.910170 CACATGATGTTGCGAAAAGACAG 59.090 43.478 0.00 0.00 0.00 3.51
256 257 3.314913 ACACATGATGTTGCGAAAAGACA 59.685 39.130 0.00 0.00 38.98 3.41
257 258 3.665409 CACACATGATGTTGCGAAAAGAC 59.335 43.478 0.00 0.00 40.64 3.01
258 259 3.314913 ACACACATGATGTTGCGAAAAGA 59.685 39.130 0.00 0.00 40.64 2.52
259 260 3.631144 ACACACATGATGTTGCGAAAAG 58.369 40.909 0.00 0.00 40.64 2.27
260 261 3.706802 ACACACATGATGTTGCGAAAA 57.293 38.095 0.00 0.00 40.64 2.29
261 262 3.706802 AACACACATGATGTTGCGAAA 57.293 38.095 16.03 0.00 40.64 3.46
267 268 4.567558 CAGTTTTGCAACACACATGATGTT 59.432 37.500 17.49 12.44 40.64 2.71
268 269 4.114073 CAGTTTTGCAACACACATGATGT 58.886 39.130 17.49 0.00 44.81 3.06
269 270 4.114073 ACAGTTTTGCAACACACATGATG 58.886 39.130 17.49 8.37 35.05 3.07
270 271 4.098349 AGACAGTTTTGCAACACACATGAT 59.902 37.500 17.49 0.71 35.05 2.45
271 272 3.443329 AGACAGTTTTGCAACACACATGA 59.557 39.130 17.49 0.00 35.05 3.07
272 273 3.772932 AGACAGTTTTGCAACACACATG 58.227 40.909 17.49 9.69 35.05 3.21
273 274 4.423732 GAAGACAGTTTTGCAACACACAT 58.576 39.130 17.49 2.63 35.05 3.21
274 275 3.366883 GGAAGACAGTTTTGCAACACACA 60.367 43.478 17.49 0.00 35.05 3.72
275 276 3.179048 GGAAGACAGTTTTGCAACACAC 58.821 45.455 17.49 6.51 35.05 3.82
276 277 2.159448 CGGAAGACAGTTTTGCAACACA 60.159 45.455 17.49 0.00 35.05 3.72
277 278 2.450160 CGGAAGACAGTTTTGCAACAC 58.550 47.619 7.67 7.67 35.05 3.32
278 279 1.202245 GCGGAAGACAGTTTTGCAACA 60.202 47.619 0.00 0.00 35.05 3.33
279 280 1.202245 TGCGGAAGACAGTTTTGCAAC 60.202 47.619 0.00 0.00 0.00 4.17
280 281 1.098869 TGCGGAAGACAGTTTTGCAA 58.901 45.000 0.00 0.00 0.00 4.08
281 282 1.098869 TTGCGGAAGACAGTTTTGCA 58.901 45.000 0.00 0.00 0.00 4.08
282 283 1.202245 TGTTGCGGAAGACAGTTTTGC 60.202 47.619 0.00 0.00 0.00 3.68
283 284 2.842208 TGTTGCGGAAGACAGTTTTG 57.158 45.000 0.00 0.00 0.00 2.44
284 285 2.490115 TGTTGTTGCGGAAGACAGTTTT 59.510 40.909 0.00 0.00 0.00 2.43
285 286 2.088423 TGTTGTTGCGGAAGACAGTTT 58.912 42.857 0.00 0.00 0.00 2.66
286 287 1.400494 GTGTTGTTGCGGAAGACAGTT 59.600 47.619 6.12 0.00 0.00 3.16
287 288 1.014352 GTGTTGTTGCGGAAGACAGT 58.986 50.000 6.12 0.00 0.00 3.55
288 289 0.307760 GGTGTTGTTGCGGAAGACAG 59.692 55.000 6.12 0.00 0.00 3.51
289 290 0.107410 AGGTGTTGTTGCGGAAGACA 60.107 50.000 0.00 0.00 0.00 3.41
290 291 1.873698 TAGGTGTTGTTGCGGAAGAC 58.126 50.000 0.00 0.00 0.00 3.01
291 292 2.224426 ACATAGGTGTTGTTGCGGAAGA 60.224 45.455 0.00 0.00 34.01 2.87
292 293 2.151202 ACATAGGTGTTGTTGCGGAAG 58.849 47.619 0.00 0.00 34.01 3.46
293 294 2.264005 ACATAGGTGTTGTTGCGGAA 57.736 45.000 0.00 0.00 34.01 4.30
294 295 2.264005 AACATAGGTGTTGTTGCGGA 57.736 45.000 0.00 0.00 46.43 5.54
361 362 9.577110 CATAGACAATGTTGCAGAAATATTTGT 57.423 29.630 5.17 0.00 27.92 2.83
377 378 4.985413 ACCAAATCGCAACATAGACAATG 58.015 39.130 0.00 0.00 41.74 2.82
378 379 5.643379 AACCAAATCGCAACATAGACAAT 57.357 34.783 0.00 0.00 0.00 2.71
379 380 5.446143 AAACCAAATCGCAACATAGACAA 57.554 34.783 0.00 0.00 0.00 3.18
380 381 4.083003 GGAAACCAAATCGCAACATAGACA 60.083 41.667 0.00 0.00 0.00 3.41
381 382 4.412207 GGAAACCAAATCGCAACATAGAC 58.588 43.478 0.00 0.00 0.00 2.59
382 383 3.126171 CGGAAACCAAATCGCAACATAGA 59.874 43.478 0.00 0.00 0.00 1.98
383 384 3.425404 CGGAAACCAAATCGCAACATAG 58.575 45.455 0.00 0.00 0.00 2.23
384 385 2.414824 GCGGAAACCAAATCGCAACATA 60.415 45.455 0.00 0.00 46.33 2.29
385 386 1.668628 GCGGAAACCAAATCGCAACAT 60.669 47.619 0.00 0.00 46.33 2.71
386 387 0.318275 GCGGAAACCAAATCGCAACA 60.318 50.000 0.00 0.00 46.33 3.33
387 388 2.430493 GCGGAAACCAAATCGCAAC 58.570 52.632 0.00 0.00 46.33 4.17
388 389 4.955089 GCGGAAACCAAATCGCAA 57.045 50.000 0.00 0.00 46.33 4.85
390 391 2.202427 CGGCGGAAACCAAATCGC 60.202 61.111 0.00 0.00 46.35 4.58
391 392 2.202427 GCGGCGGAAACCAAATCG 60.202 61.111 9.78 0.00 0.00 3.34
392 393 1.006825 GTTGCGGCGGAAACCAAATC 61.007 55.000 17.19 0.00 0.00 2.17
393 394 1.006688 GTTGCGGCGGAAACCAAAT 60.007 52.632 17.19 0.00 0.00 2.32
394 395 1.945354 TTGTTGCGGCGGAAACCAAA 61.945 50.000 17.19 5.59 29.85 3.28
395 396 1.739338 ATTGTTGCGGCGGAAACCAA 61.739 50.000 17.19 16.96 29.85 3.67
396 397 0.889638 TATTGTTGCGGCGGAAACCA 60.890 50.000 17.19 7.98 29.85 3.67
397 398 0.455464 GTATTGTTGCGGCGGAAACC 60.455 55.000 17.19 4.97 29.85 3.27
398 399 0.455464 GGTATTGTTGCGGCGGAAAC 60.455 55.000 17.19 10.37 31.80 2.78
399 400 1.587933 GGGTATTGTTGCGGCGGAAA 61.588 55.000 17.19 0.69 0.00 3.13
400 401 2.041686 GGGTATTGTTGCGGCGGAA 61.042 57.895 10.55 10.55 0.00 4.30
401 402 2.437002 GGGTATTGTTGCGGCGGA 60.437 61.111 9.78 1.34 0.00 5.54
402 403 2.118404 ATGGGTATTGTTGCGGCGG 61.118 57.895 9.78 0.00 0.00 6.13
403 404 1.063972 CATGGGTATTGTTGCGGCG 59.936 57.895 0.51 0.51 0.00 6.46
404 405 0.530288 AACATGGGTATTGTTGCGGC 59.470 50.000 0.00 0.00 36.02 6.53
405 406 2.276472 CAACATGGGTATTGTTGCGG 57.724 50.000 0.00 0.00 45.10 5.69
409 410 5.431765 TGTTTTTGCAACATGGGTATTGTT 58.568 33.333 0.00 0.00 37.79 2.83
410 411 5.028549 TGTTTTTGCAACATGGGTATTGT 57.971 34.783 0.00 0.00 0.00 2.71
411 412 5.050227 CACTGTTTTTGCAACATGGGTATTG 60.050 40.000 0.00 0.00 0.00 1.90
412 413 5.055812 CACTGTTTTTGCAACATGGGTATT 58.944 37.500 0.00 0.00 0.00 1.89
413 414 4.343526 TCACTGTTTTTGCAACATGGGTAT 59.656 37.500 0.00 0.00 0.00 2.73
414 415 3.701542 TCACTGTTTTTGCAACATGGGTA 59.298 39.130 0.00 0.00 0.00 3.69
415 416 2.499289 TCACTGTTTTTGCAACATGGGT 59.501 40.909 0.00 0.00 0.00 4.51
416 417 3.176552 TCACTGTTTTTGCAACATGGG 57.823 42.857 0.00 0.00 0.00 4.00
417 418 4.370049 TCATCACTGTTTTTGCAACATGG 58.630 39.130 0.00 0.00 0.00 3.66
418 419 5.970140 TTCATCACTGTTTTTGCAACATG 57.030 34.783 0.00 0.00 0.00 3.21
419 420 6.981762 TTTTCATCACTGTTTTTGCAACAT 57.018 29.167 0.00 0.00 0.00 2.71
420 421 6.791887 TTTTTCATCACTGTTTTTGCAACA 57.208 29.167 0.00 0.00 0.00 3.33
471 472 8.504812 AACAAAGGTTATGTTGCAGAATTTTT 57.495 26.923 0.00 0.00 39.43 1.94
482 483 8.956533 AAATACTTTGCAACAAAGGTTATGTT 57.043 26.923 20.67 5.23 41.50 2.71
483 484 8.421002 AGAAATACTTTGCAACAAAGGTTATGT 58.579 29.630 20.67 8.42 34.87 2.29
484 485 8.702438 CAGAAATACTTTGCAACAAAGGTTATG 58.298 33.333 20.67 14.97 34.87 1.90
485 486 7.384932 GCAGAAATACTTTGCAACAAAGGTTAT 59.615 33.333 20.67 9.99 37.75 1.89
486 487 6.699642 GCAGAAATACTTTGCAACAAAGGTTA 59.300 34.615 20.67 8.40 37.75 2.85
487 488 5.523552 GCAGAAATACTTTGCAACAAAGGTT 59.476 36.000 20.67 13.40 37.75 3.50
488 489 5.049828 GCAGAAATACTTTGCAACAAAGGT 58.950 37.500 20.67 10.97 37.75 3.50
489 490 5.049167 TGCAGAAATACTTTGCAACAAAGG 58.951 37.500 20.67 5.71 44.13 3.11
514 515 4.505808 TCATTATTGCAACAAGGGCATTG 58.494 39.130 10.78 10.78 45.01 2.82
515 516 4.467082 TCTCATTATTGCAACAAGGGCATT 59.533 37.500 0.00 0.00 41.58 3.56
516 517 4.025360 TCTCATTATTGCAACAAGGGCAT 58.975 39.130 0.00 0.00 41.58 4.40
517 518 3.429492 TCTCATTATTGCAACAAGGGCA 58.571 40.909 0.00 0.00 40.00 5.36
518 519 4.176271 GTTCTCATTATTGCAACAAGGGC 58.824 43.478 0.00 0.00 0.00 5.19
519 520 5.047802 ACTGTTCTCATTATTGCAACAAGGG 60.048 40.000 0.00 0.00 29.94 3.95
520 521 5.860182 CACTGTTCTCATTATTGCAACAAGG 59.140 40.000 0.00 0.00 29.94 3.61
521 522 6.441274 ACACTGTTCTCATTATTGCAACAAG 58.559 36.000 0.00 0.00 29.94 3.16
522 523 6.389830 ACACTGTTCTCATTATTGCAACAA 57.610 33.333 0.00 0.00 29.94 2.83
523 524 6.389830 AACACTGTTCTCATTATTGCAACA 57.610 33.333 0.00 0.00 0.00 3.33
524 525 7.806690 TCTAACACTGTTCTCATTATTGCAAC 58.193 34.615 0.00 0.00 0.00 4.17
525 526 7.977789 TCTAACACTGTTCTCATTATTGCAA 57.022 32.000 0.00 0.00 0.00 4.08
526 527 7.414429 GCATCTAACACTGTTCTCATTATTGCA 60.414 37.037 0.00 0.00 0.00 4.08
527 528 6.909357 GCATCTAACACTGTTCTCATTATTGC 59.091 38.462 0.00 0.00 0.00 3.56
528 529 8.121086 CAGCATCTAACACTGTTCTCATTATTG 58.879 37.037 0.00 0.00 0.00 1.90
529 530 7.281774 CCAGCATCTAACACTGTTCTCATTATT 59.718 37.037 0.00 0.00 0.00 1.40
530 531 6.765036 CCAGCATCTAACACTGTTCTCATTAT 59.235 38.462 0.00 0.00 0.00 1.28
531 532 6.070824 TCCAGCATCTAACACTGTTCTCATTA 60.071 38.462 0.00 0.00 0.00 1.90
532 533 4.940046 CCAGCATCTAACACTGTTCTCATT 59.060 41.667 0.00 0.00 0.00 2.57
533 534 4.223700 TCCAGCATCTAACACTGTTCTCAT 59.776 41.667 0.00 0.00 0.00 2.90
534 535 3.578282 TCCAGCATCTAACACTGTTCTCA 59.422 43.478 0.00 0.00 0.00 3.27
535 536 4.193826 TCCAGCATCTAACACTGTTCTC 57.806 45.455 0.00 0.00 0.00 2.87
536 537 4.833478 ATCCAGCATCTAACACTGTTCT 57.167 40.909 0.00 0.00 0.00 3.01
537 538 4.811557 GGTATCCAGCATCTAACACTGTTC 59.188 45.833 0.00 0.00 0.00 3.18
538 539 4.471386 AGGTATCCAGCATCTAACACTGTT 59.529 41.667 0.00 0.00 0.00 3.16
539 540 4.033709 AGGTATCCAGCATCTAACACTGT 58.966 43.478 0.00 0.00 0.00 3.55
540 541 4.141846 ACAGGTATCCAGCATCTAACACTG 60.142 45.833 0.00 0.00 0.00 3.66
541 542 4.033709 ACAGGTATCCAGCATCTAACACT 58.966 43.478 0.00 0.00 0.00 3.55
542 543 4.408182 ACAGGTATCCAGCATCTAACAC 57.592 45.455 0.00 0.00 0.00 3.32
543 544 4.959839 TGTACAGGTATCCAGCATCTAACA 59.040 41.667 0.00 0.00 0.00 2.41
544 545 5.531122 TGTACAGGTATCCAGCATCTAAC 57.469 43.478 0.00 0.00 0.00 2.34
545 546 6.553953 TTTGTACAGGTATCCAGCATCTAA 57.446 37.500 0.00 0.00 0.00 2.10
546 547 6.747414 ATTTGTACAGGTATCCAGCATCTA 57.253 37.500 0.00 0.00 0.00 1.98
547 548 5.636903 ATTTGTACAGGTATCCAGCATCT 57.363 39.130 0.00 0.00 0.00 2.90
548 549 6.765989 TGTTATTTGTACAGGTATCCAGCATC 59.234 38.462 0.00 0.00 0.00 3.91
549 550 6.658849 TGTTATTTGTACAGGTATCCAGCAT 58.341 36.000 0.00 0.00 0.00 3.79
550 551 6.056090 TGTTATTTGTACAGGTATCCAGCA 57.944 37.500 0.00 0.00 0.00 4.41
551 552 6.113411 ACTGTTATTTGTACAGGTATCCAGC 58.887 40.000 7.78 0.00 45.67 4.85
552 553 7.414098 GCAACTGTTATTTGTACAGGTATCCAG 60.414 40.741 7.78 2.71 41.45 3.86
553 554 6.373216 GCAACTGTTATTTGTACAGGTATCCA 59.627 38.462 7.78 0.00 41.45 3.41
554 555 6.183360 GGCAACTGTTATTTGTACAGGTATCC 60.183 42.308 7.78 2.79 41.45 2.59
555 556 6.456449 CGGCAACTGTTATTTGTACAGGTATC 60.456 42.308 7.78 0.00 41.45 2.24
556 557 5.353123 CGGCAACTGTTATTTGTACAGGTAT 59.647 40.000 7.78 0.00 41.45 2.73
557 558 4.691685 CGGCAACTGTTATTTGTACAGGTA 59.308 41.667 7.78 0.00 41.45 3.08
558 559 3.500680 CGGCAACTGTTATTTGTACAGGT 59.499 43.478 7.78 0.00 44.08 4.00
559 560 3.749088 TCGGCAACTGTTATTTGTACAGG 59.251 43.478 7.78 0.00 45.67 4.00
560 561 4.142902 CCTCGGCAACTGTTATTTGTACAG 60.143 45.833 0.00 0.00 46.56 2.74
561 562 3.749088 CCTCGGCAACTGTTATTTGTACA 59.251 43.478 0.00 0.00 0.00 2.90
562 563 3.425758 GCCTCGGCAACTGTTATTTGTAC 60.426 47.826 2.41 0.00 41.49 2.90
563 564 2.745281 GCCTCGGCAACTGTTATTTGTA 59.255 45.455 2.41 0.00 41.49 2.41
564 565 1.539827 GCCTCGGCAACTGTTATTTGT 59.460 47.619 2.41 0.00 41.49 2.83
565 566 1.465689 CGCCTCGGCAACTGTTATTTG 60.466 52.381 8.87 0.00 42.06 2.32
566 567 0.802494 CGCCTCGGCAACTGTTATTT 59.198 50.000 8.87 0.00 42.06 1.40
567 568 1.024579 CCGCCTCGGCAACTGTTATT 61.025 55.000 8.87 0.00 41.17 1.40
568 569 1.449601 CCGCCTCGGCAACTGTTAT 60.450 57.895 8.87 0.00 41.17 1.89
569 570 2.047655 CCGCCTCGGCAACTGTTA 60.048 61.111 8.87 0.00 41.17 2.41
579 580 0.577269 CTAAAAGATTCGCCGCCTCG 59.423 55.000 0.00 0.00 0.00 4.63
580 581 1.935933 TCTAAAAGATTCGCCGCCTC 58.064 50.000 0.00 0.00 0.00 4.70
581 582 2.396590 TTCTAAAAGATTCGCCGCCT 57.603 45.000 0.00 0.00 0.00 5.52
582 583 3.481112 TTTTCTAAAAGATTCGCCGCC 57.519 42.857 0.00 0.00 0.00 6.13
583 584 4.499399 GGATTTTTCTAAAAGATTCGCCGC 59.501 41.667 0.00 0.00 0.00 6.53
584 585 4.728608 CGGATTTTTCTAAAAGATTCGCCG 59.271 41.667 0.00 0.00 0.00 6.46
585 586 4.499399 GCGGATTTTTCTAAAAGATTCGCC 59.501 41.667 14.38 1.78 37.39 5.54
586 587 4.499399 GGCGGATTTTTCTAAAAGATTCGC 59.501 41.667 16.14 16.14 39.65 4.70
587 588 4.728608 CGGCGGATTTTTCTAAAAGATTCG 59.271 41.667 0.00 0.62 0.00 3.34
588 589 5.034797 CCGGCGGATTTTTCTAAAAGATTC 58.965 41.667 24.41 0.00 0.00 2.52
589 590 4.676986 GCCGGCGGATTTTTCTAAAAGATT 60.677 41.667 33.44 0.00 0.00 2.40
590 591 3.181490 GCCGGCGGATTTTTCTAAAAGAT 60.181 43.478 33.44 0.00 0.00 2.40
591 592 2.162809 GCCGGCGGATTTTTCTAAAAGA 59.837 45.455 33.44 0.00 0.00 2.52
592 593 2.526077 GCCGGCGGATTTTTCTAAAAG 58.474 47.619 33.44 0.00 0.00 2.27
593 594 1.202817 GGCCGGCGGATTTTTCTAAAA 59.797 47.619 33.44 0.00 0.00 1.52
594 595 0.812549 GGCCGGCGGATTTTTCTAAA 59.187 50.000 33.44 0.00 0.00 1.85
595 596 1.370587 CGGCCGGCGGATTTTTCTAA 61.371 55.000 33.44 0.00 0.00 2.10
596 597 1.816259 CGGCCGGCGGATTTTTCTA 60.816 57.895 33.44 0.00 0.00 2.10
597 598 3.131478 CGGCCGGCGGATTTTTCT 61.131 61.111 33.44 0.00 0.00 2.52
598 599 3.128845 TCGGCCGGCGGATTTTTC 61.129 61.111 33.44 10.69 0.00 2.29
599 600 3.436924 GTCGGCCGGCGGATTTTT 61.437 61.111 35.32 0.00 0.00 1.94
617 618 1.847890 TTTCTTTGGCCACGCTACGC 61.848 55.000 3.88 0.00 0.00 4.42
618 619 0.589223 TTTTCTTTGGCCACGCTACG 59.411 50.000 3.88 0.00 0.00 3.51
619 620 2.785713 TTTTTCTTTGGCCACGCTAC 57.214 45.000 3.88 0.00 0.00 3.58
649 650 1.003233 GGACCTTCACTGAACCGGATT 59.997 52.381 9.46 0.00 0.00 3.01
668 669 1.736586 CTGTAGGCCGCTGTCTAGG 59.263 63.158 0.00 0.00 26.80 3.02
681 682 2.561569 CCGTTCCTATTTGGCCTGTAG 58.438 52.381 3.32 3.45 35.26 2.74
690 691 1.076995 GGCAGGGCCGTTCCTATTT 60.077 57.895 6.89 0.00 39.62 1.40
767 768 0.038159 AGAGAGTTTTCGGGTCAGCG 60.038 55.000 0.00 0.00 0.00 5.18
849 855 1.883084 CGCAGCGGTGGATAGTTCC 60.883 63.158 17.54 0.00 42.94 3.62
850 856 3.706140 CGCAGCGGTGGATAGTTC 58.294 61.111 17.54 0.00 0.00 3.01
864 870 2.336088 GGCTTTTGCTTCTGCGCA 59.664 55.556 10.98 10.98 46.54 6.09
1043 1051 2.480419 CGAGAAAAAGCGATGTTGTCCT 59.520 45.455 0.00 0.00 0.00 3.85
1045 1053 2.234187 GCGAGAAAAAGCGATGTTGTC 58.766 47.619 0.00 0.00 0.00 3.18
1093 1101 1.068885 CAGATTAGGCGACGGAGCTAG 60.069 57.143 0.00 0.00 37.29 3.42
1101 1109 0.107654 AACCCAGCAGATTAGGCGAC 60.108 55.000 0.00 0.00 36.08 5.19
1105 1113 1.808133 GCTCGAACCCAGCAGATTAGG 60.808 57.143 0.00 0.00 36.82 2.69
1139 1147 2.388121 CGCACAGAAAAGAGGCAAAAG 58.612 47.619 0.00 0.00 0.00 2.27
1235 1243 5.193527 TCCCTTCATGATCACCCAAATCTTA 59.806 40.000 0.00 0.00 0.00 2.10
1331 1339 0.546598 GGGTGGGCTGCACTTACTAT 59.453 55.000 2.50 0.00 0.00 2.12
1393 1401 4.105697 ACTTCACCCAAGATTCCAGGTAAA 59.894 41.667 0.00 0.00 35.82 2.01
1464 1474 6.552445 ATTCAAGTCATAACTAGGTGAGCT 57.448 37.500 0.00 0.00 33.48 4.09
1466 1476 9.003658 ACAAAATTCAAGTCATAACTAGGTGAG 57.996 33.333 0.00 0.00 33.48 3.51
1535 1545 6.524933 TGGTGCGAATTGTTAACATATTTTCG 59.475 34.615 24.19 24.19 0.00 3.46
1587 1661 5.352569 AGAAGATGCTCAGTTCGTTAATTGG 59.647 40.000 0.00 0.00 0.00 3.16
1646 1720 4.600012 AGACAAGACGAAACACACAAAG 57.400 40.909 0.00 0.00 0.00 2.77
1924 2097 8.619546 CATCTCTGAAAAGGAATATCAGTTTCC 58.380 37.037 0.00 0.00 42.51 3.13
1944 2117 4.837972 GGAAAAGTACTTCCAGCATCTCT 58.162 43.478 8.95 0.00 43.84 3.10
1987 2160 4.021229 TGGACTAGTATGACATGAACGGT 58.979 43.478 0.00 0.00 0.00 4.83
2000 2173 2.623416 CTGCATCATCCGTGGACTAGTA 59.377 50.000 0.00 0.00 0.00 1.82
2015 2188 8.437742 CAATGGAAGTTAAAAATTCACTGCATC 58.562 33.333 5.40 0.00 34.90 3.91
2050 2223 6.541278 CCATCTCAGCATCTTTGATGAACTAA 59.459 38.462 11.25 0.00 46.83 2.24
2134 2308 8.616076 AGCTTCATAAAATACTAACAGTCATGC 58.384 33.333 0.00 0.00 0.00 4.06
2142 2316 9.601217 TCCTTCTGAGCTTCATAAAATACTAAC 57.399 33.333 0.00 0.00 0.00 2.34
2156 2330 8.301002 GTCTATATACGATTTCCTTCTGAGCTT 58.699 37.037 0.00 0.00 0.00 3.74
2158 2332 7.030768 GGTCTATATACGATTTCCTTCTGAGC 58.969 42.308 0.00 0.00 0.00 4.26
2162 2336 7.011382 ACTGGGTCTATATACGATTTCCTTCT 58.989 38.462 0.00 0.00 0.00 2.85
2173 2347 4.743644 GCACACGAAACTGGGTCTATATAC 59.256 45.833 0.00 0.00 0.00 1.47
2207 2381 3.430895 GTCAAGCATTCAATGTTTGCCTG 59.569 43.478 19.30 0.32 46.78 4.85
2276 2450 1.740296 GCGTCGCCTAAGCAAAGGA 60.740 57.895 5.75 0.00 39.15 3.36
2312 2486 5.902431 AGCTTCCAGATTGACTACCTAGAAT 59.098 40.000 0.00 0.00 0.00 2.40
2367 2541 6.515272 AAGTATGTATGAAGCCAACAAAGG 57.485 37.500 0.00 0.00 0.00 3.11
2444 2619 5.033589 ACATGCAAAGGAAAATTGAACCA 57.966 34.783 0.00 0.00 0.00 3.67
2563 2738 3.815401 GTCAGATACTGCTGTTGGTGTTT 59.185 43.478 0.09 0.00 37.20 2.83
2622 2797 2.234908 CCAGGAACTAACTGTCAGGGAG 59.765 54.545 4.53 3.38 36.02 4.30
2705 2880 1.984297 GACTTCACCGCGTCTAGTTTC 59.016 52.381 4.92 0.00 0.00 2.78
2710 2885 0.607217 TCCAGACTTCACCGCGTCTA 60.607 55.000 4.92 0.00 38.37 2.59
2728 2903 2.159467 CGCTTTCGCAATACAAGGTC 57.841 50.000 0.00 0.00 35.30 3.85
2740 2915 3.484229 CCAAGAAACATCTAGCGCTTTCG 60.484 47.826 18.68 4.77 39.07 3.46
2754 2929 4.507756 GGAAAGCACATTTGACCAAGAAAC 59.492 41.667 0.00 0.00 0.00 2.78
2786 2961 1.668826 TTCAGCCCAGTAGGTTCCAT 58.331 50.000 0.00 0.00 38.26 3.41
2787 2962 1.351017 CTTTCAGCCCAGTAGGTTCCA 59.649 52.381 0.00 0.00 38.26 3.53
2788 2963 1.628846 TCTTTCAGCCCAGTAGGTTCC 59.371 52.381 0.00 0.00 38.26 3.62
2799 2974 1.509923 GCAGGTGCATCTTTCAGCC 59.490 57.895 0.00 0.00 41.59 4.85
2911 3087 1.176527 CCCCACAATTGCAATCGTCT 58.823 50.000 13.38 0.00 0.00 4.18
2951 3130 3.684305 CCATGCTCACTACGACAAAATCA 59.316 43.478 0.00 0.00 0.00 2.57
3196 3519 4.019858 TGTGTTTGTTCACCCATTTCAGA 58.980 39.130 0.00 0.00 37.51 3.27
3241 3616 8.408043 AGATGTTCCAACTTTATTGTGAATCA 57.592 30.769 0.00 0.00 0.00 2.57
3265 3640 9.838339 ATACTCCCTCAGTTCACAAAATATAAG 57.162 33.333 0.00 0.00 36.43 1.73
3268 3643 8.960591 CAAATACTCCCTCAGTTCACAAAATAT 58.039 33.333 0.00 0.00 36.43 1.28
3269 3644 7.942341 ACAAATACTCCCTCAGTTCACAAAATA 59.058 33.333 0.00 0.00 36.43 1.40
3270 3645 6.777580 ACAAATACTCCCTCAGTTCACAAAAT 59.222 34.615 0.00 0.00 36.43 1.82
3271 3646 6.126409 ACAAATACTCCCTCAGTTCACAAAA 58.874 36.000 0.00 0.00 36.43 2.44
3414 3790 4.240888 CATGTCTCAGTCGACTGTGAATT 58.759 43.478 37.86 28.33 44.76 2.17
3481 3857 6.160576 ACAGCACCAAAGTTGAACAATTAT 57.839 33.333 0.00 0.00 0.00 1.28
3483 3859 4.470334 ACAGCACCAAAGTTGAACAATT 57.530 36.364 0.00 0.00 0.00 2.32
3486 3862 3.129638 GGTTACAGCACCAAAGTTGAACA 59.870 43.478 0.00 0.00 36.73 3.18
3547 3923 3.012518 GCATGCAATGGAGTACAGAACT 58.987 45.455 14.21 0.00 46.86 3.01
3609 4017 3.468770 GTCATCTACTCGGAGCTACTCA 58.531 50.000 4.58 0.00 31.08 3.41
3630 4038 3.306166 CACGAGGTTTTAAGTATCTGGCG 59.694 47.826 0.00 0.00 0.00 5.69
3640 4048 1.944024 CTGGTGCACACGAGGTTTTAA 59.056 47.619 20.43 0.00 34.13 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.