Multiple sequence alignment - TraesCS1A01G242700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G242700 chr1A 100.000 2414 0 0 1 2414 430612190 430614603 0.000000e+00 4458.0
1 TraesCS1A01G242700 chr1B 94.909 766 26 8 800 1565 448518309 448519061 0.000000e+00 1186.0
2 TraesCS1A01G242700 chr1B 86.039 659 48 25 1790 2414 448522334 448522982 0.000000e+00 667.0
3 TraesCS1A01G242700 chr1B 90.728 151 7 1 1581 1724 448522168 448522318 6.810000e-46 195.0
4 TraesCS1A01G242700 chr1B 88.535 157 12 2 97 247 448302451 448302607 4.100000e-43 185.0
5 TraesCS1A01G242700 chr1B 83.333 144 12 6 1 132 448302306 448302449 3.260000e-24 122.0
6 TraesCS1A01G242700 chr1D 92.845 573 23 11 1170 1735 332965092 332965653 0.000000e+00 815.0
7 TraesCS1A01G242700 chr1D 86.575 365 22 17 821 1178 332963430 332963774 6.300000e-101 377.0
8 TraesCS1A01G242700 chr1D 85.445 371 23 9 1785 2126 332965662 332966030 8.210000e-95 357.0
9 TraesCS1A01G242700 chr1D 90.164 122 9 2 2120 2238 332968996 332969117 3.210000e-34 156.0
10 TraesCS1A01G242700 chr1D 95.122 41 2 0 1732 1772 12984806 12984846 5.570000e-07 65.8
11 TraesCS1A01G242700 chr2A 96.364 275 6 4 491 764 651904409 651904138 1.320000e-122 449.0
12 TraesCS1A01G242700 chr7A 97.338 263 6 1 496 757 506291322 506291584 1.700000e-121 446.0
13 TraesCS1A01G242700 chr3A 97.328 262 6 1 496 756 234263108 234262847 6.120000e-121 444.0
14 TraesCS1A01G242700 chr3A 96.642 268 6 3 493 757 741483462 741483195 2.200000e-120 442.0
15 TraesCS1A01G242700 chr3A 96.642 268 6 3 493 757 741557382 741557115 2.200000e-120 442.0
16 TraesCS1A01G242700 chr3A 96.269 268 7 3 493 757 741414256 741413989 1.020000e-118 436.0
17 TraesCS1A01G242700 chr3A 96.269 268 7 3 493 757 741465357 741465090 1.020000e-118 436.0
18 TraesCS1A01G242700 chr3B 96.970 264 7 1 495 757 723033969 723033706 2.200000e-120 442.0
19 TraesCS1A01G242700 chr6A 96.255 267 8 2 491 756 439231078 439230813 1.020000e-118 436.0
20 TraesCS1A01G242700 chr7D 89.286 56 4 2 1728 1782 622178091 622178037 4.310000e-08 69.4
21 TraesCS1A01G242700 chr7B 94.737 38 2 0 1735 1772 697558592 697558555 2.590000e-05 60.2
22 TraesCS1A01G242700 chr6D 94.737 38 2 0 1735 1772 100873814 100873851 2.590000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G242700 chr1A 430612190 430614603 2413 False 4458.000000 4458 100.000000 1 2414 1 chr1A.!!$F1 2413
1 TraesCS1A01G242700 chr1B 448518309 448522982 4673 False 682.666667 1186 90.558667 800 2414 3 chr1B.!!$F2 1614
2 TraesCS1A01G242700 chr1D 332963430 332969117 5687 False 426.250000 815 88.757250 821 2238 4 chr1D.!!$F2 1417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.036105 TCGGCATTGTCACTGCTCAT 60.036 50.0 14.11 0.0 39.60 2.90 F
792 793 0.042794 GTTTGACCGTGTGTGTACGC 60.043 55.0 0.00 0.0 42.44 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 2734 0.387367 CACTACTGCTGCTTCGTCGT 60.387 55.000 0.0 0.0 0.00 4.34 R
1693 6139 1.348696 TGGAGATGTGTGCTCATGTGT 59.651 47.619 0.0 0.0 34.07 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.225860 AGGGGTCATCGGTGTTGA 57.774 55.556 0.00 0.00 0.00 3.18
18 19 1.983224 AGGGGTCATCGGTGTTGAG 59.017 57.895 0.00 0.00 0.00 3.02
19 20 0.544357 AGGGGTCATCGGTGTTGAGA 60.544 55.000 0.00 0.00 0.00 3.27
20 21 0.108138 GGGGTCATCGGTGTTGAGAG 60.108 60.000 0.00 0.00 0.00 3.20
21 22 0.895530 GGGTCATCGGTGTTGAGAGA 59.104 55.000 0.00 0.00 0.00 3.10
22 23 1.404315 GGGTCATCGGTGTTGAGAGAC 60.404 57.143 0.00 0.00 0.00 3.36
23 24 1.618861 GTCATCGGTGTTGAGAGACG 58.381 55.000 0.00 0.00 0.00 4.18
24 25 1.199327 GTCATCGGTGTTGAGAGACGA 59.801 52.381 0.00 0.00 38.00 4.20
25 26 1.468914 TCATCGGTGTTGAGAGACGAG 59.531 52.381 0.00 0.00 36.97 4.18
26 27 1.200252 CATCGGTGTTGAGAGACGAGT 59.800 52.381 0.00 0.00 36.97 4.18
27 28 0.873054 TCGGTGTTGAGAGACGAGTC 59.127 55.000 0.00 0.00 0.00 3.36
28 29 0.591659 CGGTGTTGAGAGACGAGTCA 59.408 55.000 5.99 0.00 0.00 3.41
29 30 1.001706 CGGTGTTGAGAGACGAGTCAA 60.002 52.381 5.99 0.00 0.00 3.18
32 33 1.053811 GTTGAGAGACGAGTCAACGC 58.946 55.000 5.99 2.36 42.23 4.84
33 34 0.385598 TTGAGAGACGAGTCAACGCG 60.386 55.000 3.53 3.53 44.60 6.01
34 35 2.126812 AGAGACGAGTCAACGCGC 60.127 61.111 5.73 0.00 42.87 6.86
35 36 2.428569 GAGACGAGTCAACGCGCA 60.429 61.111 5.73 0.00 42.87 6.09
36 37 2.014554 GAGACGAGTCAACGCGCAA 61.015 57.895 5.73 0.00 42.87 4.85
37 38 1.545614 GAGACGAGTCAACGCGCAAA 61.546 55.000 5.73 0.00 42.87 3.68
38 39 1.149361 AGACGAGTCAACGCGCAAAA 61.149 50.000 5.73 0.00 42.87 2.44
39 40 0.315544 GACGAGTCAACGCGCAAAAA 60.316 50.000 5.73 0.00 42.87 1.94
59 60 3.156157 AAAAACGTCGTGGGTGTCA 57.844 47.368 0.00 0.00 0.00 3.58
60 61 1.670791 AAAAACGTCGTGGGTGTCAT 58.329 45.000 0.00 0.00 0.00 3.06
61 62 0.941542 AAAACGTCGTGGGTGTCATG 59.058 50.000 0.00 0.00 0.00 3.07
62 63 0.882927 AAACGTCGTGGGTGTCATGG 60.883 55.000 0.00 0.00 33.31 3.66
63 64 2.035237 AACGTCGTGGGTGTCATGGT 62.035 55.000 0.00 0.00 33.31 3.55
64 65 1.736645 CGTCGTGGGTGTCATGGTC 60.737 63.158 0.00 0.00 33.31 4.02
65 66 1.671742 GTCGTGGGTGTCATGGTCT 59.328 57.895 0.00 0.00 33.31 3.85
66 67 0.892755 GTCGTGGGTGTCATGGTCTA 59.107 55.000 0.00 0.00 33.31 2.59
67 68 1.135083 GTCGTGGGTGTCATGGTCTAG 60.135 57.143 0.00 0.00 33.31 2.43
68 69 0.175760 CGTGGGTGTCATGGTCTAGG 59.824 60.000 0.00 0.00 0.00 3.02
69 70 1.276622 GTGGGTGTCATGGTCTAGGT 58.723 55.000 0.00 0.00 0.00 3.08
70 71 1.207329 GTGGGTGTCATGGTCTAGGTC 59.793 57.143 0.00 0.00 0.00 3.85
71 72 1.078823 TGGGTGTCATGGTCTAGGTCT 59.921 52.381 0.00 0.00 0.00 3.85
72 73 1.757699 GGGTGTCATGGTCTAGGTCTC 59.242 57.143 0.00 0.00 0.00 3.36
73 74 2.457598 GGTGTCATGGTCTAGGTCTCA 58.542 52.381 0.00 0.00 0.00 3.27
74 75 2.832129 GGTGTCATGGTCTAGGTCTCAA 59.168 50.000 0.00 0.00 0.00 3.02
75 76 3.118956 GGTGTCATGGTCTAGGTCTCAAG 60.119 52.174 0.00 0.00 0.00 3.02
76 77 3.764434 GTGTCATGGTCTAGGTCTCAAGA 59.236 47.826 0.00 0.00 0.00 3.02
77 78 4.220821 GTGTCATGGTCTAGGTCTCAAGAA 59.779 45.833 0.00 0.00 0.00 2.52
78 79 5.026121 TGTCATGGTCTAGGTCTCAAGAAT 58.974 41.667 0.00 0.00 0.00 2.40
79 80 5.105187 TGTCATGGTCTAGGTCTCAAGAATG 60.105 44.000 0.00 0.00 0.00 2.67
80 81 4.406972 TCATGGTCTAGGTCTCAAGAATGG 59.593 45.833 0.00 0.00 0.00 3.16
81 82 2.501723 TGGTCTAGGTCTCAAGAATGGC 59.498 50.000 0.00 0.00 0.00 4.40
82 83 2.501723 GGTCTAGGTCTCAAGAATGGCA 59.498 50.000 0.00 0.00 0.00 4.92
83 84 3.526534 GTCTAGGTCTCAAGAATGGCAC 58.473 50.000 0.00 0.00 0.00 5.01
91 92 3.054875 TCTCAAGAATGGCACACTGCTAT 60.055 43.478 0.00 0.00 46.84 2.97
92 93 4.162131 TCTCAAGAATGGCACACTGCTATA 59.838 41.667 0.00 0.00 44.00 1.31
93 94 4.445453 TCAAGAATGGCACACTGCTATAG 58.555 43.478 0.00 0.00 44.00 1.31
94 95 3.482156 AGAATGGCACACTGCTATAGG 57.518 47.619 1.04 0.00 44.00 2.57
95 96 1.876156 GAATGGCACACTGCTATAGGC 59.124 52.381 1.04 0.00 44.00 3.93
96 97 0.109342 ATGGCACACTGCTATAGGCC 59.891 55.000 0.00 0.00 42.94 5.19
97 98 1.595382 GGCACACTGCTATAGGCCG 60.595 63.158 0.00 0.00 44.28 6.13
98 99 1.595382 GCACACTGCTATAGGCCGG 60.595 63.158 0.00 0.00 40.96 6.13
99 100 1.595382 CACACTGCTATAGGCCGGC 60.595 63.158 21.18 21.18 40.92 6.13
100 101 2.063979 ACACTGCTATAGGCCGGCA 61.064 57.895 30.85 9.36 40.92 5.69
101 102 1.595382 CACTGCTATAGGCCGGCAC 60.595 63.158 30.85 17.99 40.92 5.01
102 103 2.063979 ACTGCTATAGGCCGGCACA 61.064 57.895 30.85 15.98 40.92 4.57
103 104 1.595382 CTGCTATAGGCCGGCACAC 60.595 63.158 30.85 11.48 40.92 3.82
104 105 2.032860 CTGCTATAGGCCGGCACACT 62.033 60.000 30.85 18.97 40.92 3.55
105 106 1.301009 GCTATAGGCCGGCACACTC 60.301 63.158 30.85 10.59 34.27 3.51
106 107 1.007271 CTATAGGCCGGCACACTCG 60.007 63.158 30.85 7.67 0.00 4.18
112 113 3.803082 CCGGCACACTCGGCATTG 61.803 66.667 0.00 0.00 41.07 2.82
113 114 3.049674 CGGCACACTCGGCATTGT 61.050 61.111 0.00 0.00 0.00 2.71
114 115 2.870372 GGCACACTCGGCATTGTC 59.130 61.111 0.00 0.00 0.00 3.18
115 116 1.965930 GGCACACTCGGCATTGTCA 60.966 57.895 0.00 0.00 0.00 3.58
116 117 1.207593 GCACACTCGGCATTGTCAC 59.792 57.895 0.00 0.00 0.00 3.67
117 118 1.230635 GCACACTCGGCATTGTCACT 61.231 55.000 0.00 0.00 0.00 3.41
118 119 0.514255 CACACTCGGCATTGTCACTG 59.486 55.000 0.00 0.00 0.00 3.66
119 120 1.230635 ACACTCGGCATTGTCACTGC 61.231 55.000 6.62 6.62 38.93 4.40
120 121 0.952497 CACTCGGCATTGTCACTGCT 60.952 55.000 14.11 0.00 39.60 4.24
121 122 0.671781 ACTCGGCATTGTCACTGCTC 60.672 55.000 14.11 4.75 39.60 4.26
122 123 0.671472 CTCGGCATTGTCACTGCTCA 60.671 55.000 14.11 1.70 39.60 4.26
123 124 0.036105 TCGGCATTGTCACTGCTCAT 60.036 50.000 14.11 0.00 39.60 2.90
124 125 0.376152 CGGCATTGTCACTGCTCATC 59.624 55.000 14.11 0.00 39.60 2.92
125 126 1.456296 GGCATTGTCACTGCTCATCA 58.544 50.000 14.11 0.00 39.60 3.07
126 127 1.131883 GGCATTGTCACTGCTCATCAC 59.868 52.381 14.11 0.00 39.60 3.06
127 128 1.131883 GCATTGTCACTGCTCATCACC 59.868 52.381 7.86 0.00 36.68 4.02
128 129 2.708051 CATTGTCACTGCTCATCACCT 58.292 47.619 0.00 0.00 0.00 4.00
129 130 2.462456 TTGTCACTGCTCATCACCTC 57.538 50.000 0.00 0.00 0.00 3.85
130 131 1.637338 TGTCACTGCTCATCACCTCT 58.363 50.000 0.00 0.00 0.00 3.69
131 132 1.274447 TGTCACTGCTCATCACCTCTG 59.726 52.381 0.00 0.00 0.00 3.35
132 133 1.547820 GTCACTGCTCATCACCTCTGA 59.452 52.381 0.00 0.00 0.00 3.27
133 134 1.823610 TCACTGCTCATCACCTCTGAG 59.176 52.381 0.00 0.00 42.47 3.35
134 135 1.549620 CACTGCTCATCACCTCTGAGT 59.450 52.381 3.66 0.00 41.77 3.41
135 136 2.028294 CACTGCTCATCACCTCTGAGTT 60.028 50.000 3.66 0.00 41.77 3.01
136 137 3.194329 CACTGCTCATCACCTCTGAGTTA 59.806 47.826 3.66 0.00 41.77 2.24
137 138 3.834813 ACTGCTCATCACCTCTGAGTTAA 59.165 43.478 3.66 0.00 41.77 2.01
138 139 4.081752 ACTGCTCATCACCTCTGAGTTAAG 60.082 45.833 3.66 1.75 41.77 1.85
139 140 3.194062 GCTCATCACCTCTGAGTTAAGC 58.806 50.000 3.66 0.78 41.77 3.09
140 141 3.118811 GCTCATCACCTCTGAGTTAAGCT 60.119 47.826 3.66 0.00 41.77 3.74
141 142 4.622695 GCTCATCACCTCTGAGTTAAGCTT 60.623 45.833 3.48 3.48 41.77 3.74
142 143 5.486526 CTCATCACCTCTGAGTTAAGCTTT 58.513 41.667 3.20 0.00 36.26 3.51
143 144 5.869579 TCATCACCTCTGAGTTAAGCTTTT 58.130 37.500 3.20 0.00 0.00 2.27
144 145 5.702670 TCATCACCTCTGAGTTAAGCTTTTG 59.297 40.000 3.20 0.00 0.00 2.44
145 146 9.420677 CTCATCACCTCTGAGTTAAGCTTTTGC 62.421 44.444 3.20 0.00 39.50 3.68
156 157 2.296658 GCTTTTGCAACAACGGTGG 58.703 52.632 4.97 0.00 46.58 4.61
157 158 0.459411 GCTTTTGCAACAACGGTGGT 60.459 50.000 4.97 0.00 46.58 4.16
158 159 1.276415 CTTTTGCAACAACGGTGGTG 58.724 50.000 15.94 15.94 46.01 4.17
159 160 0.603569 TTTTGCAACAACGGTGGTGT 59.396 45.000 21.60 0.00 44.95 4.16
160 161 0.603569 TTTGCAACAACGGTGGTGTT 59.396 45.000 21.60 5.30 44.95 3.32
179 180 2.823196 TGCAAACAACAGACAACGAG 57.177 45.000 0.00 0.00 0.00 4.18
180 181 1.400142 TGCAAACAACAGACAACGAGG 59.600 47.619 0.00 0.00 0.00 4.63
181 182 1.859998 GCAAACAACAGACAACGAGGC 60.860 52.381 0.00 0.00 0.00 4.70
182 183 1.021968 AAACAACAGACAACGAGGCC 58.978 50.000 0.00 0.00 0.00 5.19
183 184 1.157870 AACAACAGACAACGAGGCCG 61.158 55.000 0.00 0.00 42.50 6.13
184 185 1.300620 CAACAGACAACGAGGCCGA 60.301 57.895 0.00 0.00 39.50 5.54
185 186 1.300697 AACAGACAACGAGGCCGAC 60.301 57.895 0.00 0.00 39.50 4.79
186 187 2.432628 CAGACAACGAGGCCGACC 60.433 66.667 0.00 0.00 39.50 4.79
187 188 4.052229 AGACAACGAGGCCGACCG 62.052 66.667 12.47 12.47 42.76 4.79
190 191 4.143333 CAACGAGGCCGACCGGAT 62.143 66.667 9.46 0.00 42.76 4.18
191 192 3.387947 AACGAGGCCGACCGGATT 61.388 61.111 9.46 0.00 42.76 3.01
192 193 3.659089 AACGAGGCCGACCGGATTG 62.659 63.158 9.46 6.25 42.76 2.67
194 195 4.467084 GAGGCCGACCGGATTGCA 62.467 66.667 9.46 0.00 42.76 4.08
195 196 3.969250 GAGGCCGACCGGATTGCAA 62.969 63.158 9.46 0.00 42.76 4.08
196 197 2.828549 GGCCGACCGGATTGCAAT 60.829 61.111 12.83 12.83 37.50 3.56
197 198 1.525077 GGCCGACCGGATTGCAATA 60.525 57.895 12.97 0.00 37.50 1.90
198 199 0.889186 GGCCGACCGGATTGCAATAT 60.889 55.000 12.97 0.00 37.50 1.28
199 200 0.951558 GCCGACCGGATTGCAATATT 59.048 50.000 12.97 0.00 37.50 1.28
200 201 1.334960 GCCGACCGGATTGCAATATTG 60.335 52.381 12.97 11.27 37.50 1.90
201 202 1.334960 CCGACCGGATTGCAATATTGC 60.335 52.381 29.58 29.58 45.74 3.56
213 214 4.568152 GCAATATTGCGGTAGTTGGATT 57.432 40.909 23.77 0.00 45.11 3.01
214 215 4.290155 GCAATATTGCGGTAGTTGGATTG 58.710 43.478 23.77 0.00 45.11 2.67
215 216 4.290155 CAATATTGCGGTAGTTGGATTGC 58.710 43.478 1.74 0.00 0.00 3.56
216 217 1.832883 ATTGCGGTAGTTGGATTGCA 58.167 45.000 0.00 0.00 0.00 4.08
217 218 1.610363 TTGCGGTAGTTGGATTGCAA 58.390 45.000 0.00 0.00 39.73 4.08
218 219 1.832883 TGCGGTAGTTGGATTGCAAT 58.167 45.000 12.83 12.83 0.00 3.56
219 220 2.992593 TGCGGTAGTTGGATTGCAATA 58.007 42.857 12.97 0.00 0.00 1.90
220 221 3.550820 TGCGGTAGTTGGATTGCAATAT 58.449 40.909 12.97 0.00 0.00 1.28
221 222 3.314913 TGCGGTAGTTGGATTGCAATATG 59.685 43.478 12.97 0.00 0.00 1.78
222 223 3.563808 GCGGTAGTTGGATTGCAATATGA 59.436 43.478 12.97 0.00 0.00 2.15
223 224 4.216257 GCGGTAGTTGGATTGCAATATGAT 59.784 41.667 12.97 0.51 0.00 2.45
224 225 5.278463 GCGGTAGTTGGATTGCAATATGATT 60.278 40.000 12.97 1.33 0.00 2.57
225 226 6.144854 CGGTAGTTGGATTGCAATATGATTG 58.855 40.000 12.97 0.00 0.00 2.67
226 227 6.017192 CGGTAGTTGGATTGCAATATGATTGA 60.017 38.462 12.97 0.00 0.00 2.57
227 228 7.308770 CGGTAGTTGGATTGCAATATGATTGAT 60.309 37.037 12.97 0.00 0.00 2.57
228 229 7.811236 GGTAGTTGGATTGCAATATGATTGATG 59.189 37.037 12.97 0.00 0.00 3.07
229 230 7.356089 AGTTGGATTGCAATATGATTGATGT 57.644 32.000 12.97 0.00 0.00 3.06
230 231 7.788026 AGTTGGATTGCAATATGATTGATGTT 58.212 30.769 12.97 0.00 0.00 2.71
231 232 7.709182 AGTTGGATTGCAATATGATTGATGTTG 59.291 33.333 12.97 0.00 36.49 3.33
235 236 2.727798 GCAATATGATTGATGTTGCGGC 59.272 45.455 2.21 0.00 45.67 6.53
236 237 3.311106 CAATATGATTGATGTTGCGGCC 58.689 45.455 0.00 0.00 0.00 6.13
237 238 2.049888 TATGATTGATGTTGCGGCCA 57.950 45.000 2.24 0.00 0.00 5.36
238 239 1.184431 ATGATTGATGTTGCGGCCAA 58.816 45.000 2.24 0.00 0.00 4.52
239 240 0.527113 TGATTGATGTTGCGGCCAAG 59.473 50.000 2.24 0.00 0.00 3.61
240 241 0.810648 GATTGATGTTGCGGCCAAGA 59.189 50.000 2.24 0.00 0.00 3.02
241 242 0.527565 ATTGATGTTGCGGCCAAGAC 59.472 50.000 2.24 0.00 0.00 3.01
242 243 1.851021 TTGATGTTGCGGCCAAGACG 61.851 55.000 2.24 0.00 36.98 4.18
250 251 2.689083 CGGCCAAGACGCAATATCA 58.311 52.632 2.24 0.00 0.00 2.15
251 252 1.013596 CGGCCAAGACGCAATATCAA 58.986 50.000 2.24 0.00 0.00 2.57
252 253 1.268032 CGGCCAAGACGCAATATCAAC 60.268 52.381 2.24 0.00 0.00 3.18
253 254 1.742831 GGCCAAGACGCAATATCAACA 59.257 47.619 0.00 0.00 0.00 3.33
254 255 2.358898 GGCCAAGACGCAATATCAACAT 59.641 45.455 0.00 0.00 0.00 2.71
255 256 3.365832 GCCAAGACGCAATATCAACATG 58.634 45.455 0.00 0.00 0.00 3.21
256 257 3.065233 GCCAAGACGCAATATCAACATGA 59.935 43.478 0.00 0.00 0.00 3.07
257 258 4.261322 GCCAAGACGCAATATCAACATGAT 60.261 41.667 0.00 0.00 40.72 2.45
258 259 5.209977 CCAAGACGCAATATCAACATGATG 58.790 41.667 0.00 0.00 37.70 3.07
259 260 5.220912 CCAAGACGCAATATCAACATGATGT 60.221 40.000 0.00 0.00 37.70 3.06
260 261 6.260377 CAAGACGCAATATCAACATGATGTT 58.740 36.000 4.72 4.72 42.08 2.71
269 270 2.314561 AACATGATGTTGCAACGACG 57.685 45.000 23.79 12.78 39.45 5.12
270 271 0.516877 ACATGATGTTGCAACGACGG 59.483 50.000 23.79 16.76 0.00 4.79
271 272 0.794229 CATGATGTTGCAACGACGGC 60.794 55.000 23.79 11.58 0.00 5.68
272 273 2.202171 GATGTTGCAACGACGGCG 60.202 61.111 23.79 10.39 44.79 6.46
291 292 3.981210 GCGTTTTGCAACATGATCAATG 58.019 40.909 8.99 0.52 45.45 2.82
301 302 2.193447 CATGATCAATGTTGCAGCAGC 58.807 47.619 9.71 1.51 42.57 5.25
302 303 1.541379 TGATCAATGTTGCAGCAGCT 58.459 45.000 9.71 0.00 42.74 4.24
303 304 2.713877 TGATCAATGTTGCAGCAGCTA 58.286 42.857 9.71 0.00 42.74 3.32
304 305 2.421073 TGATCAATGTTGCAGCAGCTAC 59.579 45.455 9.71 8.65 45.00 3.58
318 319 3.670311 CAGCTACACTGCAACATGATC 57.330 47.619 0.00 0.00 40.19 2.92
319 320 3.004862 CAGCTACACTGCAACATGATCA 58.995 45.455 0.00 0.00 40.19 2.92
320 321 3.437741 CAGCTACACTGCAACATGATCAA 59.562 43.478 0.00 0.00 40.19 2.57
321 322 4.095932 CAGCTACACTGCAACATGATCAAT 59.904 41.667 0.00 0.00 40.19 2.57
322 323 4.095932 AGCTACACTGCAACATGATCAATG 59.904 41.667 0.00 0.52 37.59 2.82
323 324 8.274259 CAGCTACACTGCAACATGATCAATGT 62.274 42.308 0.00 2.13 45.14 2.71
331 332 1.738432 CATGATCAATGTTGCGCTCG 58.262 50.000 9.73 0.00 0.00 5.03
332 333 1.328374 CATGATCAATGTTGCGCTCGA 59.672 47.619 9.73 0.00 0.00 4.04
333 334 1.437625 TGATCAATGTTGCGCTCGAA 58.562 45.000 9.73 0.00 0.00 3.71
334 335 1.128507 TGATCAATGTTGCGCTCGAAC 59.871 47.619 9.73 5.43 0.00 3.95
335 336 1.394917 GATCAATGTTGCGCTCGAACT 59.605 47.619 9.73 0.00 0.00 3.01
336 337 2.073117 TCAATGTTGCGCTCGAACTA 57.927 45.000 9.73 0.00 0.00 2.24
337 338 1.724623 TCAATGTTGCGCTCGAACTAC 59.275 47.619 9.73 0.00 0.00 2.73
338 339 1.076332 AATGTTGCGCTCGAACTACC 58.924 50.000 9.73 0.00 0.00 3.18
339 340 1.076533 ATGTTGCGCTCGAACTACCG 61.077 55.000 9.73 0.00 0.00 4.02
340 341 2.807895 TTGCGCTCGAACTACCGC 60.808 61.111 9.73 0.00 45.99 5.68
341 342 3.277211 TTGCGCTCGAACTACCGCT 62.277 57.895 9.73 0.00 45.97 5.52
342 343 2.950194 GCGCTCGAACTACCGCTC 60.950 66.667 0.00 0.00 42.83 5.03
343 344 2.648102 CGCTCGAACTACCGCTCG 60.648 66.667 0.00 0.00 36.39 5.03
344 345 2.789917 GCTCGAACTACCGCTCGA 59.210 61.111 0.00 0.00 41.54 4.04
345 346 1.355916 GCTCGAACTACCGCTCGAT 59.644 57.895 0.00 0.00 42.73 3.59
346 347 0.657951 GCTCGAACTACCGCTCGATC 60.658 60.000 0.00 0.00 42.73 3.69
347 348 0.656259 CTCGAACTACCGCTCGATCA 59.344 55.000 0.00 0.00 42.73 2.92
348 349 1.264557 CTCGAACTACCGCTCGATCAT 59.735 52.381 0.00 0.00 42.73 2.45
349 350 2.479275 CTCGAACTACCGCTCGATCATA 59.521 50.000 0.00 0.00 42.73 2.15
350 351 3.072211 TCGAACTACCGCTCGATCATAT 58.928 45.455 0.00 0.00 39.07 1.78
351 352 3.124806 TCGAACTACCGCTCGATCATATC 59.875 47.826 0.00 0.00 39.07 1.63
381 382 1.795768 GTGACTGACGATCTTTGCCA 58.204 50.000 0.00 0.00 0.00 4.92
382 383 2.143122 GTGACTGACGATCTTTGCCAA 58.857 47.619 0.00 0.00 0.00 4.52
383 384 2.548057 GTGACTGACGATCTTTGCCAAA 59.452 45.455 0.00 0.00 0.00 3.28
384 385 3.003275 GTGACTGACGATCTTTGCCAAAA 59.997 43.478 0.00 0.00 0.00 2.44
385 386 3.629855 TGACTGACGATCTTTGCCAAAAA 59.370 39.130 0.00 0.00 0.00 1.94
386 387 4.278170 TGACTGACGATCTTTGCCAAAAAT 59.722 37.500 0.00 0.00 0.00 1.82
387 388 4.798574 ACTGACGATCTTTGCCAAAAATC 58.201 39.130 0.00 0.00 0.00 2.17
388 389 4.278170 ACTGACGATCTTTGCCAAAAATCA 59.722 37.500 4.50 0.00 0.00 2.57
389 390 4.797471 TGACGATCTTTGCCAAAAATCAG 58.203 39.130 4.50 0.42 0.00 2.90
390 391 3.578688 ACGATCTTTGCCAAAAATCAGC 58.421 40.909 4.50 0.00 0.00 4.26
391 392 2.925563 CGATCTTTGCCAAAAATCAGCC 59.074 45.455 4.50 0.00 0.00 4.85
392 393 2.437200 TCTTTGCCAAAAATCAGCCG 57.563 45.000 0.00 0.00 0.00 5.52
393 394 1.000731 TCTTTGCCAAAAATCAGCCGG 59.999 47.619 0.00 0.00 0.00 6.13
394 395 0.602372 TTTGCCAAAAATCAGCCGGC 60.602 50.000 21.89 21.89 43.28 6.13
395 396 2.125552 GCCAAAAATCAGCCGGCC 60.126 61.111 26.15 5.07 36.73 6.13
396 397 2.181525 CCAAAAATCAGCCGGCCG 59.818 61.111 26.15 21.04 0.00 6.13
397 398 2.339556 CCAAAAATCAGCCGGCCGA 61.340 57.895 30.73 21.05 0.00 5.54
398 399 1.137404 CAAAAATCAGCCGGCCGAG 59.863 57.895 30.73 18.40 0.00 4.63
399 400 2.046285 AAAAATCAGCCGGCCGAGG 61.046 57.895 30.73 15.79 0.00 4.63
444 445 3.837669 AAAAACCTTGCTACGCACG 57.162 47.368 0.00 0.00 38.71 5.34
445 446 1.018910 AAAAACCTTGCTACGCACGT 58.981 45.000 0.00 0.00 38.71 4.49
446 447 1.868469 AAAACCTTGCTACGCACGTA 58.132 45.000 2.56 2.56 38.71 3.57
447 448 2.088950 AAACCTTGCTACGCACGTAT 57.911 45.000 3.01 0.00 38.71 3.06
448 449 1.355971 AACCTTGCTACGCACGTATG 58.644 50.000 3.01 0.05 38.71 2.39
449 450 0.459585 ACCTTGCTACGCACGTATGG 60.460 55.000 3.01 6.72 38.71 2.74
450 451 0.179121 CCTTGCTACGCACGTATGGA 60.179 55.000 3.01 0.00 38.71 3.41
451 452 1.200483 CTTGCTACGCACGTATGGAG 58.800 55.000 3.01 0.00 38.71 3.86
452 453 0.179121 TTGCTACGCACGTATGGAGG 60.179 55.000 3.01 0.00 38.71 4.30
453 454 1.949631 GCTACGCACGTATGGAGGC 60.950 63.158 3.01 0.00 0.00 4.70
454 455 1.299926 CTACGCACGTATGGAGGCC 60.300 63.158 3.01 0.00 0.00 5.19
455 456 3.128632 TACGCACGTATGGAGGCCG 62.129 63.158 0.00 0.00 0.00 6.13
457 458 4.910585 GCACGTATGGAGGCCGGG 62.911 72.222 2.18 0.00 0.00 5.73
458 459 4.910585 CACGTATGGAGGCCGGGC 62.911 72.222 22.67 22.67 0.00 6.13
473 474 3.861263 GGCGCACCCGAAACGATC 61.861 66.667 10.83 0.00 36.29 3.69
474 475 3.861263 GCGCACCCGAAACGATCC 61.861 66.667 0.30 0.00 36.29 3.36
475 476 2.125673 CGCACCCGAAACGATCCT 60.126 61.111 0.00 0.00 36.29 3.24
476 477 1.740296 CGCACCCGAAACGATCCTT 60.740 57.895 0.00 0.00 36.29 3.36
477 478 1.693083 CGCACCCGAAACGATCCTTC 61.693 60.000 0.00 0.00 36.29 3.46
478 479 0.391263 GCACCCGAAACGATCCTTCT 60.391 55.000 0.00 0.00 0.00 2.85
479 480 1.944430 GCACCCGAAACGATCCTTCTT 60.944 52.381 0.00 0.00 0.00 2.52
480 481 1.732259 CACCCGAAACGATCCTTCTTG 59.268 52.381 0.00 0.00 0.00 3.02
481 482 1.338769 ACCCGAAACGATCCTTCTTGG 60.339 52.381 0.00 0.00 37.10 3.61
482 483 1.338769 CCCGAAACGATCCTTCTTGGT 60.339 52.381 0.00 0.00 37.07 3.67
483 484 2.423577 CCGAAACGATCCTTCTTGGTT 58.576 47.619 0.00 0.00 37.07 3.67
484 485 2.812011 CCGAAACGATCCTTCTTGGTTT 59.188 45.455 0.00 0.00 37.07 3.27
485 486 3.364964 CCGAAACGATCCTTCTTGGTTTG 60.365 47.826 0.00 0.00 37.07 2.93
486 487 3.496884 CGAAACGATCCTTCTTGGTTTGA 59.503 43.478 0.00 0.00 37.07 2.69
487 488 4.154195 CGAAACGATCCTTCTTGGTTTGAT 59.846 41.667 0.00 0.00 37.07 2.57
488 489 5.376854 AAACGATCCTTCTTGGTTTGATG 57.623 39.130 0.00 0.00 37.07 3.07
489 490 3.347216 ACGATCCTTCTTGGTTTGATGG 58.653 45.455 0.00 0.00 37.07 3.51
490 491 3.244911 ACGATCCTTCTTGGTTTGATGGT 60.245 43.478 0.00 0.00 37.07 3.55
491 492 3.758554 CGATCCTTCTTGGTTTGATGGTT 59.241 43.478 0.00 0.00 37.07 3.67
492 493 4.218417 CGATCCTTCTTGGTTTGATGGTTT 59.782 41.667 0.00 0.00 37.07 3.27
493 494 4.935352 TCCTTCTTGGTTTGATGGTTTG 57.065 40.909 0.00 0.00 37.07 2.93
494 495 4.285863 TCCTTCTTGGTTTGATGGTTTGT 58.714 39.130 0.00 0.00 37.07 2.83
495 496 4.099266 TCCTTCTTGGTTTGATGGTTTGTG 59.901 41.667 0.00 0.00 37.07 3.33
496 497 4.141959 CCTTCTTGGTTTGATGGTTTGTGT 60.142 41.667 0.00 0.00 0.00 3.72
497 498 5.068460 CCTTCTTGGTTTGATGGTTTGTGTA 59.932 40.000 0.00 0.00 0.00 2.90
498 499 5.508200 TCTTGGTTTGATGGTTTGTGTAC 57.492 39.130 0.00 0.00 0.00 2.90
499 500 5.197451 TCTTGGTTTGATGGTTTGTGTACT 58.803 37.500 0.00 0.00 0.00 2.73
500 501 5.298276 TCTTGGTTTGATGGTTTGTGTACTC 59.702 40.000 0.00 0.00 0.00 2.59
501 502 3.886505 TGGTTTGATGGTTTGTGTACTCC 59.113 43.478 0.00 0.00 0.00 3.85
502 503 3.254903 GGTTTGATGGTTTGTGTACTCCC 59.745 47.826 0.00 0.00 0.00 4.30
503 504 4.142038 GTTTGATGGTTTGTGTACTCCCT 58.858 43.478 0.00 0.00 0.00 4.20
504 505 3.695830 TGATGGTTTGTGTACTCCCTC 57.304 47.619 0.00 0.00 0.00 4.30
505 506 2.304761 TGATGGTTTGTGTACTCCCTCC 59.695 50.000 0.00 0.00 0.00 4.30
506 507 0.682852 TGGTTTGTGTACTCCCTCCG 59.317 55.000 0.00 0.00 0.00 4.63
507 508 0.683412 GGTTTGTGTACTCCCTCCGT 59.317 55.000 0.00 0.00 0.00 4.69
508 509 1.071228 GGTTTGTGTACTCCCTCCGTT 59.929 52.381 0.00 0.00 0.00 4.44
509 510 2.486013 GGTTTGTGTACTCCCTCCGTTT 60.486 50.000 0.00 0.00 0.00 3.60
510 511 3.208594 GTTTGTGTACTCCCTCCGTTTT 58.791 45.455 0.00 0.00 0.00 2.43
511 512 3.564053 TTGTGTACTCCCTCCGTTTTT 57.436 42.857 0.00 0.00 0.00 1.94
512 513 4.686191 TTGTGTACTCCCTCCGTTTTTA 57.314 40.909 0.00 0.00 0.00 1.52
513 514 4.895668 TGTGTACTCCCTCCGTTTTTAT 57.104 40.909 0.00 0.00 0.00 1.40
514 515 5.231702 TGTGTACTCCCTCCGTTTTTATT 57.768 39.130 0.00 0.00 0.00 1.40
515 516 5.623169 TGTGTACTCCCTCCGTTTTTATTT 58.377 37.500 0.00 0.00 0.00 1.40
516 517 6.767456 TGTGTACTCCCTCCGTTTTTATTTA 58.233 36.000 0.00 0.00 0.00 1.40
517 518 6.650390 TGTGTACTCCCTCCGTTTTTATTTAC 59.350 38.462 0.00 0.00 0.00 2.01
518 519 6.875726 GTGTACTCCCTCCGTTTTTATTTACT 59.124 38.462 0.00 0.00 0.00 2.24
519 520 7.063898 GTGTACTCCCTCCGTTTTTATTTACTC 59.936 40.741 0.00 0.00 0.00 2.59
520 521 6.370186 ACTCCCTCCGTTTTTATTTACTCT 57.630 37.500 0.00 0.00 0.00 3.24
521 522 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
522 523 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
523 524 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
524 525 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
525 526 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
526 527 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
527 528 8.621286 CCTCCGTTTTTATTTACTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
541 542 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
542 543 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
543 544 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
569 570 6.505044 ACTTCGTAAAGTTTGACCAAGTTT 57.495 33.333 0.00 0.00 43.28 2.66
570 571 7.614124 ACTTCGTAAAGTTTGACCAAGTTTA 57.386 32.000 0.00 0.00 43.28 2.01
571 572 8.217131 ACTTCGTAAAGTTTGACCAAGTTTAT 57.783 30.769 0.00 0.00 43.28 1.40
572 573 9.328845 ACTTCGTAAAGTTTGACCAAGTTTATA 57.671 29.630 0.00 0.00 43.28 0.98
573 574 9.807386 CTTCGTAAAGTTTGACCAAGTTTATAG 57.193 33.333 0.00 2.48 40.73 1.31
574 575 9.545105 TTCGTAAAGTTTGACCAAGTTTATAGA 57.455 29.630 0.00 4.22 40.73 1.98
575 576 9.545105 TCGTAAAGTTTGACCAAGTTTATAGAA 57.455 29.630 0.00 0.00 40.73 2.10
717 718 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
718 719 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
719 720 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
723 724 5.405935 AAAGCTTGACTTTGACCAAAACT 57.594 34.783 0.00 0.00 47.00 2.66
724 725 6.524101 AAAGCTTGACTTTGACCAAAACTA 57.476 33.333 0.00 0.00 47.00 2.24
725 726 6.524101 AAGCTTGACTTTGACCAAAACTAA 57.476 33.333 0.00 0.00 33.71 2.24
726 727 5.891451 AGCTTGACTTTGACCAAAACTAAC 58.109 37.500 0.00 0.00 0.00 2.34
727 728 5.417580 AGCTTGACTTTGACCAAAACTAACA 59.582 36.000 0.00 0.00 0.00 2.41
728 729 6.096846 AGCTTGACTTTGACCAAAACTAACAT 59.903 34.615 0.00 0.00 0.00 2.71
729 730 6.198966 GCTTGACTTTGACCAAAACTAACATG 59.801 38.462 0.00 0.00 0.00 3.21
730 731 5.587289 TGACTTTGACCAAAACTAACATGC 58.413 37.500 0.00 0.00 0.00 4.06
731 732 5.126222 TGACTTTGACCAAAACTAACATGCA 59.874 36.000 0.00 0.00 0.00 3.96
732 733 5.971763 ACTTTGACCAAAACTAACATGCAA 58.028 33.333 0.00 0.00 0.00 4.08
733 734 6.402222 ACTTTGACCAAAACTAACATGCAAA 58.598 32.000 0.00 0.00 0.00 3.68
734 735 6.312672 ACTTTGACCAAAACTAACATGCAAAC 59.687 34.615 0.00 0.00 0.00 2.93
735 736 5.590530 TGACCAAAACTAACATGCAAACT 57.409 34.783 0.00 0.00 0.00 2.66
736 737 6.701145 TGACCAAAACTAACATGCAAACTA 57.299 33.333 0.00 0.00 0.00 2.24
737 738 7.101652 TGACCAAAACTAACATGCAAACTAA 57.898 32.000 0.00 0.00 0.00 2.24
738 739 7.548097 TGACCAAAACTAACATGCAAACTAAA 58.452 30.769 0.00 0.00 0.00 1.85
739 740 8.200792 TGACCAAAACTAACATGCAAACTAAAT 58.799 29.630 0.00 0.00 0.00 1.40
740 741 9.685828 GACCAAAACTAACATGCAAACTAAATA 57.314 29.630 0.00 0.00 0.00 1.40
747 748 9.187455 ACTAACATGCAAACTAAATAAAAACGG 57.813 29.630 0.00 0.00 0.00 4.44
748 749 9.400638 CTAACATGCAAACTAAATAAAAACGGA 57.599 29.630 0.00 0.00 0.00 4.69
749 750 7.867445 ACATGCAAACTAAATAAAAACGGAG 57.133 32.000 0.00 0.00 0.00 4.63
750 751 6.866248 ACATGCAAACTAAATAAAAACGGAGG 59.134 34.615 0.00 0.00 0.00 4.30
751 752 5.774630 TGCAAACTAAATAAAAACGGAGGG 58.225 37.500 0.00 0.00 0.00 4.30
752 753 5.535406 TGCAAACTAAATAAAAACGGAGGGA 59.465 36.000 0.00 0.00 0.00 4.20
753 754 6.090783 GCAAACTAAATAAAAACGGAGGGAG 58.909 40.000 0.00 0.00 0.00 4.30
754 755 6.294342 GCAAACTAAATAAAAACGGAGGGAGT 60.294 38.462 0.00 0.00 0.00 3.85
755 756 7.094677 GCAAACTAAATAAAAACGGAGGGAGTA 60.095 37.037 0.00 0.00 0.00 2.59
756 757 8.953313 CAAACTAAATAAAAACGGAGGGAGTAT 58.047 33.333 0.00 0.00 0.00 2.12
757 758 9.524496 AAACTAAATAAAAACGGAGGGAGTATT 57.476 29.630 0.00 0.00 0.00 1.89
758 759 9.524496 AACTAAATAAAAACGGAGGGAGTATTT 57.476 29.630 0.00 0.00 0.00 1.40
759 760 9.170734 ACTAAATAAAAACGGAGGGAGTATTTC 57.829 33.333 0.00 0.00 0.00 2.17
760 761 9.392259 CTAAATAAAAACGGAGGGAGTATTTCT 57.608 33.333 0.00 0.00 0.00 2.52
761 762 7.860918 AATAAAAACGGAGGGAGTATTTCTC 57.139 36.000 0.00 0.00 42.07 2.87
762 763 4.903045 AAAACGGAGGGAGTATTTCTCA 57.097 40.909 0.00 0.00 44.40 3.27
763 764 4.903045 AAACGGAGGGAGTATTTCTCAA 57.097 40.909 0.00 0.00 44.40 3.02
764 765 4.903045 AACGGAGGGAGTATTTCTCAAA 57.097 40.909 0.00 0.00 44.40 2.69
765 766 4.903045 ACGGAGGGAGTATTTCTCAAAA 57.097 40.909 0.00 0.00 44.40 2.44
766 767 5.237236 ACGGAGGGAGTATTTCTCAAAAA 57.763 39.130 0.00 0.00 44.40 1.94
787 788 2.931512 AAAAGGTTTGACCGTGTGTG 57.068 45.000 0.00 0.00 44.90 3.82
788 789 1.828979 AAAGGTTTGACCGTGTGTGT 58.171 45.000 0.00 0.00 44.90 3.72
789 790 2.695127 AAGGTTTGACCGTGTGTGTA 57.305 45.000 0.00 0.00 44.90 2.90
790 791 1.944032 AGGTTTGACCGTGTGTGTAC 58.056 50.000 0.00 0.00 44.90 2.90
791 792 0.578211 GGTTTGACCGTGTGTGTACG 59.422 55.000 0.00 0.00 43.35 3.67
792 793 0.042794 GTTTGACCGTGTGTGTACGC 60.043 55.000 0.00 0.00 42.44 4.42
888 894 1.591594 CGATATTCACACGCGCCCT 60.592 57.895 5.73 0.00 0.00 5.19
889 895 0.318360 CGATATTCACACGCGCCCTA 60.318 55.000 5.73 0.00 0.00 3.53
929 935 1.070577 CCTCGTGTGTTTTCTCTTGCG 60.071 52.381 0.00 0.00 0.00 4.85
1059 1065 2.856988 GTGGGGTTCTGGTGGGGA 60.857 66.667 0.00 0.00 0.00 4.81
1209 2541 2.363795 TCCATCCGGGAGAACGCT 60.364 61.111 0.00 0.00 42.15 5.07
1415 2753 0.387367 ACGACGAAGCAGCAGTAGTG 60.387 55.000 0.00 0.00 0.00 2.74
1432 2770 3.470567 GCGTGCGTCGTCCTGAAG 61.471 66.667 0.00 0.00 42.13 3.02
1511 2849 6.054295 ACGGTTCGATCTAGTAGTAGTTGAT 58.946 40.000 4.51 2.06 0.00 2.57
1512 2850 6.018098 ACGGTTCGATCTAGTAGTAGTTGATG 60.018 42.308 6.66 1.34 0.00 3.07
1513 2851 6.202379 CGGTTCGATCTAGTAGTAGTTGATGA 59.798 42.308 6.66 3.25 0.00 2.92
1514 2852 7.095144 CGGTTCGATCTAGTAGTAGTTGATGAT 60.095 40.741 6.66 0.00 0.00 2.45
1515 2853 8.231837 GGTTCGATCTAGTAGTAGTTGATGATC 58.768 40.741 6.66 0.00 0.00 2.92
1588 2929 0.246360 ATGCTCGATTGACCGTGTGA 59.754 50.000 0.00 0.00 0.00 3.58
1693 6139 3.057806 TCTGTGCTTCGACTTTCGTGATA 60.058 43.478 0.00 0.00 41.35 2.15
1716 6162 2.026542 ACATGAGCACACATCTCCATGT 60.027 45.455 0.00 0.00 44.72 3.21
1735 6181 5.409520 CCATGTGTGCGCTCTGTTTATATAT 59.590 40.000 9.73 0.00 0.00 0.86
1736 6182 6.589907 CCATGTGTGCGCTCTGTTTATATATA 59.410 38.462 9.73 0.00 0.00 0.86
1737 6183 7.411912 CCATGTGTGCGCTCTGTTTATATATAC 60.412 40.741 9.73 0.00 0.00 1.47
1738 6184 6.745116 TGTGTGCGCTCTGTTTATATATACT 58.255 36.000 9.73 0.00 0.00 2.12
1740 6186 7.806487 TGTGTGCGCTCTGTTTATATATACTAC 59.194 37.037 9.73 0.00 0.00 2.73
1741 6187 8.021973 GTGTGCGCTCTGTTTATATATACTACT 58.978 37.037 9.73 0.00 0.00 2.57
1743 6189 7.697291 GTGCGCTCTGTTTATATATACTACTCC 59.303 40.741 9.73 0.00 0.00 3.85
1744 6190 7.148120 TGCGCTCTGTTTATATATACTACTCCC 60.148 40.741 9.73 0.00 0.00 4.30
1745 6191 7.067251 GCGCTCTGTTTATATATACTACTCCCT 59.933 40.741 0.00 0.00 0.00 4.20
1746 6192 8.958506 CGCTCTGTTTATATATACTACTCCCTT 58.041 37.037 5.15 0.00 0.00 3.95
1758 6204 5.776173 ACTACTCCCTTCGTCTCATAATG 57.224 43.478 0.00 0.00 0.00 1.90
1759 6205 5.202004 ACTACTCCCTTCGTCTCATAATGT 58.798 41.667 0.00 0.00 0.00 2.71
1760 6206 6.363065 ACTACTCCCTTCGTCTCATAATGTA 58.637 40.000 0.00 0.00 0.00 2.29
1761 6207 6.832384 ACTACTCCCTTCGTCTCATAATGTAA 59.168 38.462 0.00 0.00 0.00 2.41
1762 6208 6.540438 ACTCCCTTCGTCTCATAATGTAAA 57.460 37.500 0.00 0.00 0.00 2.01
1763 6209 6.942976 ACTCCCTTCGTCTCATAATGTAAAA 58.057 36.000 0.00 0.00 0.00 1.52
1764 6210 6.817140 ACTCCCTTCGTCTCATAATGTAAAAC 59.183 38.462 0.00 0.00 0.00 2.43
1765 6211 5.808540 TCCCTTCGTCTCATAATGTAAAACG 59.191 40.000 0.00 0.00 0.00 3.60
1766 6212 5.579511 CCCTTCGTCTCATAATGTAAAACGT 59.420 40.000 0.00 0.00 0.00 3.99
1767 6213 6.091713 CCCTTCGTCTCATAATGTAAAACGTT 59.908 38.462 0.00 0.00 0.00 3.99
1768 6214 7.360607 CCCTTCGTCTCATAATGTAAAACGTTT 60.361 37.037 7.96 7.96 0.00 3.60
1769 6215 8.013378 CCTTCGTCTCATAATGTAAAACGTTTT 58.987 33.333 27.65 27.65 0.00 2.43
1770 6216 9.377383 CTTCGTCTCATAATGTAAAACGTTTTT 57.623 29.630 29.42 15.16 0.00 1.94
1829 6275 9.700831 AAATAAAGCTTAACTAAGATGGTCCAT 57.299 29.630 3.26 3.26 35.33 3.41
1836 6282 7.068716 GCTTAACTAAGATGGTCCATCCAAAAT 59.931 37.037 25.53 13.52 41.36 1.82
1886 6336 4.747108 CCGATAGCATCTAAACCAACTCTG 59.253 45.833 0.00 0.00 0.00 3.35
1887 6337 4.210120 CGATAGCATCTAAACCAACTCTGC 59.790 45.833 0.00 0.00 0.00 4.26
1888 6338 3.710209 AGCATCTAAACCAACTCTGCT 57.290 42.857 0.00 0.00 33.89 4.24
2008 6460 5.106908 GGAAAGGAGTTCAGACTTGATTTCG 60.107 44.000 0.00 0.00 38.06 3.46
2115 6588 6.365520 AGGTTTCTTGAGGTTGTACAAAGAT 58.634 36.000 10.51 0.00 0.00 2.40
2116 6589 7.514721 AGGTTTCTTGAGGTTGTACAAAGATA 58.485 34.615 10.51 1.82 0.00 1.98
2164 9615 7.410120 AAAATCTTGTATGTTCCCCTCATTC 57.590 36.000 0.00 0.00 0.00 2.67
2225 9676 6.669125 TGAATTTGATCCAAAACTGTCCAT 57.331 33.333 0.00 0.00 36.90 3.41
2281 9743 7.618117 TCACATTATAACAGGTCTAGTCCAAGA 59.382 37.037 8.79 0.00 0.00 3.02
2283 9745 7.399191 ACATTATAACAGGTCTAGTCCAAGACA 59.601 37.037 8.79 0.00 46.40 3.41
2288 9750 4.463186 ACAGGTCTAGTCCAAGACATACAC 59.537 45.833 8.79 0.00 46.40 2.90
2298 9760 4.398358 TCCAAGACATACACCTAACTCTCG 59.602 45.833 0.00 0.00 0.00 4.04
2345 9807 4.690280 CCGCAATGGCTTTAACTTTGAAAT 59.310 37.500 0.00 0.00 38.10 2.17
2347 9809 5.177327 CGCAATGGCTTTAACTTTGAAATGT 59.823 36.000 0.00 0.00 38.10 2.71
2350 9812 7.914871 GCAATGGCTTTAACTTTGAAATGTTTT 59.085 29.630 0.35 0.00 36.96 2.43
2381 9844 1.077993 CCCCCAAAACAACCATCCCTA 59.922 52.381 0.00 0.00 0.00 3.53
2398 9861 4.624015 TCCCTACTAATATTTCGGTTGCG 58.376 43.478 0.00 0.00 0.00 4.85
2403 9866 4.751060 ACTAATATTTCGGTTGCGAGTGA 58.249 39.130 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.544357 TCTCAACACCGATGACCCCT 60.544 55.000 0.00 0.00 0.00 4.79
1 2 0.108138 CTCTCAACACCGATGACCCC 60.108 60.000 0.00 0.00 0.00 4.95
2 3 0.895530 TCTCTCAACACCGATGACCC 59.104 55.000 0.00 0.00 0.00 4.46
3 4 1.732732 CGTCTCTCAACACCGATGACC 60.733 57.143 0.00 0.00 0.00 4.02
4 5 1.199327 TCGTCTCTCAACACCGATGAC 59.801 52.381 0.00 0.00 0.00 3.06
5 6 1.468914 CTCGTCTCTCAACACCGATGA 59.531 52.381 0.00 0.00 0.00 2.92
6 7 1.200252 ACTCGTCTCTCAACACCGATG 59.800 52.381 0.00 0.00 0.00 3.84
7 8 1.469308 GACTCGTCTCTCAACACCGAT 59.531 52.381 0.00 0.00 0.00 4.18
8 9 0.873054 GACTCGTCTCTCAACACCGA 59.127 55.000 0.00 0.00 0.00 4.69
9 10 0.591659 TGACTCGTCTCTCAACACCG 59.408 55.000 0.00 0.00 0.00 4.94
10 11 2.395654 GTTGACTCGTCTCTCAACACC 58.604 52.381 5.80 0.00 43.86 4.16
11 12 2.044860 CGTTGACTCGTCTCTCAACAC 58.955 52.381 10.30 0.00 44.40 3.32
12 13 1.599667 GCGTTGACTCGTCTCTCAACA 60.600 52.381 10.30 0.00 44.40 3.33
13 14 1.053811 GCGTTGACTCGTCTCTCAAC 58.946 55.000 0.00 0.00 41.91 3.18
14 15 0.385598 CGCGTTGACTCGTCTCTCAA 60.386 55.000 0.00 0.00 0.00 3.02
15 16 1.206831 CGCGTTGACTCGTCTCTCA 59.793 57.895 0.00 0.00 0.00 3.27
16 17 2.147133 GCGCGTTGACTCGTCTCTC 61.147 63.158 8.43 0.00 0.00 3.20
17 18 2.126812 GCGCGTTGACTCGTCTCT 60.127 61.111 8.43 0.00 0.00 3.10
18 19 1.545614 TTTGCGCGTTGACTCGTCTC 61.546 55.000 8.43 0.00 0.00 3.36
19 20 1.149361 TTTTGCGCGTTGACTCGTCT 61.149 50.000 8.43 0.00 0.00 4.18
20 21 0.315544 TTTTTGCGCGTTGACTCGTC 60.316 50.000 8.43 0.00 0.00 4.20
21 22 1.716760 TTTTTGCGCGTTGACTCGT 59.283 47.368 8.43 0.00 0.00 4.18
22 23 4.580580 TTTTTGCGCGTTGACTCG 57.419 50.000 8.43 0.00 0.00 4.18
41 42 1.332375 CATGACACCCACGACGTTTTT 59.668 47.619 0.00 0.00 0.00 1.94
42 43 0.941542 CATGACACCCACGACGTTTT 59.058 50.000 0.00 0.00 0.00 2.43
43 44 0.882927 CCATGACACCCACGACGTTT 60.883 55.000 0.00 0.00 0.00 3.60
44 45 1.301401 CCATGACACCCACGACGTT 60.301 57.895 0.00 0.00 0.00 3.99
45 46 2.342279 CCATGACACCCACGACGT 59.658 61.111 0.00 0.00 0.00 4.34
46 47 1.736645 GACCATGACACCCACGACG 60.737 63.158 0.00 0.00 0.00 5.12
47 48 0.892755 TAGACCATGACACCCACGAC 59.107 55.000 0.00 0.00 0.00 4.34
48 49 1.182667 CTAGACCATGACACCCACGA 58.817 55.000 0.00 0.00 0.00 4.35
49 50 0.175760 CCTAGACCATGACACCCACG 59.824 60.000 0.00 0.00 0.00 4.94
50 51 1.207329 GACCTAGACCATGACACCCAC 59.793 57.143 0.00 0.00 0.00 4.61
51 52 1.078823 AGACCTAGACCATGACACCCA 59.921 52.381 0.00 0.00 0.00 4.51
52 53 1.757699 GAGACCTAGACCATGACACCC 59.242 57.143 0.00 0.00 0.00 4.61
53 54 2.457598 TGAGACCTAGACCATGACACC 58.542 52.381 0.00 0.00 0.00 4.16
54 55 3.764434 TCTTGAGACCTAGACCATGACAC 59.236 47.826 0.00 0.00 0.00 3.67
55 56 4.047627 TCTTGAGACCTAGACCATGACA 57.952 45.455 0.00 0.00 0.00 3.58
56 57 5.355596 CATTCTTGAGACCTAGACCATGAC 58.644 45.833 0.00 0.00 0.00 3.06
57 58 4.406972 CCATTCTTGAGACCTAGACCATGA 59.593 45.833 0.00 0.00 0.00 3.07
58 59 4.701765 CCATTCTTGAGACCTAGACCATG 58.298 47.826 0.00 0.00 0.00 3.66
59 60 3.135530 GCCATTCTTGAGACCTAGACCAT 59.864 47.826 0.00 0.00 0.00 3.55
60 61 2.501723 GCCATTCTTGAGACCTAGACCA 59.498 50.000 0.00 0.00 0.00 4.02
61 62 2.501723 TGCCATTCTTGAGACCTAGACC 59.498 50.000 0.00 0.00 0.00 3.85
62 63 3.055819 TGTGCCATTCTTGAGACCTAGAC 60.056 47.826 0.00 0.00 0.00 2.59
63 64 3.055819 GTGTGCCATTCTTGAGACCTAGA 60.056 47.826 0.00 0.00 0.00 2.43
64 65 3.055530 AGTGTGCCATTCTTGAGACCTAG 60.056 47.826 0.00 0.00 0.00 3.02
65 66 2.906389 AGTGTGCCATTCTTGAGACCTA 59.094 45.455 0.00 0.00 0.00 3.08
66 67 1.701847 AGTGTGCCATTCTTGAGACCT 59.298 47.619 0.00 0.00 0.00 3.85
67 68 1.808945 CAGTGTGCCATTCTTGAGACC 59.191 52.381 0.00 0.00 0.00 3.85
68 69 1.198637 GCAGTGTGCCATTCTTGAGAC 59.801 52.381 0.00 0.00 37.42 3.36
69 70 1.072806 AGCAGTGTGCCATTCTTGAGA 59.927 47.619 0.00 0.00 46.52 3.27
70 71 1.531423 AGCAGTGTGCCATTCTTGAG 58.469 50.000 0.00 0.00 46.52 3.02
71 72 2.857186 TAGCAGTGTGCCATTCTTGA 57.143 45.000 0.00 0.00 46.52 3.02
72 73 3.562973 CCTATAGCAGTGTGCCATTCTTG 59.437 47.826 0.00 0.00 46.52 3.02
73 74 3.813443 CCTATAGCAGTGTGCCATTCTT 58.187 45.455 0.00 0.00 46.52 2.52
74 75 2.486191 GCCTATAGCAGTGTGCCATTCT 60.486 50.000 0.00 0.00 46.52 2.40
75 76 1.876156 GCCTATAGCAGTGTGCCATTC 59.124 52.381 0.00 0.00 46.52 2.67
76 77 1.477558 GGCCTATAGCAGTGTGCCATT 60.478 52.381 9.74 0.00 46.52 3.16
77 78 0.109342 GGCCTATAGCAGTGTGCCAT 59.891 55.000 9.74 0.00 46.52 4.40
78 79 1.526887 GGCCTATAGCAGTGTGCCA 59.473 57.895 9.74 0.00 46.52 4.92
79 80 1.595382 CGGCCTATAGCAGTGTGCC 60.595 63.158 0.00 5.60 46.52 5.01
80 81 1.595382 CCGGCCTATAGCAGTGTGC 60.595 63.158 0.00 0.00 46.50 4.57
81 82 1.595382 GCCGGCCTATAGCAGTGTG 60.595 63.158 18.11 0.00 46.50 3.82
82 83 2.063979 TGCCGGCCTATAGCAGTGT 61.064 57.895 26.77 0.00 46.50 3.55
83 84 1.595382 GTGCCGGCCTATAGCAGTG 60.595 63.158 26.77 0.00 46.50 3.66
84 85 2.063979 TGTGCCGGCCTATAGCAGT 61.064 57.895 26.77 0.00 46.50 4.40
85 86 1.595382 GTGTGCCGGCCTATAGCAG 60.595 63.158 26.77 0.00 46.50 4.24
86 87 2.028125 GAGTGTGCCGGCCTATAGCA 62.028 60.000 26.77 10.29 46.50 3.49
87 88 1.301009 GAGTGTGCCGGCCTATAGC 60.301 63.158 26.77 8.20 42.60 2.97
88 89 1.007271 CGAGTGTGCCGGCCTATAG 60.007 63.158 26.77 7.28 0.00 1.31
89 90 2.495409 CCGAGTGTGCCGGCCTATA 61.495 63.158 26.77 0.59 40.54 1.31
90 91 3.849951 CCGAGTGTGCCGGCCTAT 61.850 66.667 26.77 7.18 40.54 2.57
96 97 3.027170 GACAATGCCGAGTGTGCCG 62.027 63.158 0.00 0.00 28.29 5.69
97 98 1.965930 TGACAATGCCGAGTGTGCC 60.966 57.895 0.00 0.00 28.29 5.01
98 99 1.207593 GTGACAATGCCGAGTGTGC 59.792 57.895 0.00 0.00 28.29 4.57
99 100 0.514255 CAGTGACAATGCCGAGTGTG 59.486 55.000 0.00 0.00 28.29 3.82
100 101 1.230635 GCAGTGACAATGCCGAGTGT 61.231 55.000 16.83 0.00 37.73 3.55
101 102 0.952497 AGCAGTGACAATGCCGAGTG 60.952 55.000 23.20 0.00 44.97 3.51
102 103 0.671781 GAGCAGTGACAATGCCGAGT 60.672 55.000 23.20 5.65 44.97 4.18
103 104 0.671472 TGAGCAGTGACAATGCCGAG 60.671 55.000 23.20 0.00 44.97 4.63
104 105 0.036105 ATGAGCAGTGACAATGCCGA 60.036 50.000 23.20 11.20 44.97 5.54
105 106 0.376152 GATGAGCAGTGACAATGCCG 59.624 55.000 23.20 0.00 44.97 5.69
106 107 1.131883 GTGATGAGCAGTGACAATGCC 59.868 52.381 23.20 15.20 44.97 4.40
107 108 1.131883 GGTGATGAGCAGTGACAATGC 59.868 52.381 19.76 19.76 44.18 3.56
108 109 2.676839 GAGGTGATGAGCAGTGACAATG 59.323 50.000 0.00 0.00 0.00 2.82
109 110 2.570752 AGAGGTGATGAGCAGTGACAAT 59.429 45.455 0.00 0.00 0.00 2.71
110 111 1.973515 AGAGGTGATGAGCAGTGACAA 59.026 47.619 0.00 0.00 0.00 3.18
111 112 1.274447 CAGAGGTGATGAGCAGTGACA 59.726 52.381 0.00 0.00 0.00 3.58
112 113 1.547820 TCAGAGGTGATGAGCAGTGAC 59.452 52.381 0.00 0.00 0.00 3.67
113 114 1.823610 CTCAGAGGTGATGAGCAGTGA 59.176 52.381 0.00 0.00 37.93 3.41
114 115 1.549620 ACTCAGAGGTGATGAGCAGTG 59.450 52.381 1.53 0.00 46.64 3.66
115 116 1.935799 ACTCAGAGGTGATGAGCAGT 58.064 50.000 1.53 0.00 46.64 4.40
116 117 4.431809 CTTAACTCAGAGGTGATGAGCAG 58.568 47.826 0.00 0.00 46.64 4.24
117 118 3.368843 GCTTAACTCAGAGGTGATGAGCA 60.369 47.826 0.00 0.00 46.64 4.26
118 119 3.118811 AGCTTAACTCAGAGGTGATGAGC 60.119 47.826 0.00 2.77 46.64 4.26
120 121 5.489792 AAAGCTTAACTCAGAGGTGATGA 57.510 39.130 0.00 0.00 30.18 2.92
121 122 5.618640 GCAAAAGCTTAACTCAGAGGTGATG 60.619 44.000 0.00 0.00 30.18 3.07
122 123 4.457257 GCAAAAGCTTAACTCAGAGGTGAT 59.543 41.667 0.00 0.00 30.18 3.06
123 124 3.815401 GCAAAAGCTTAACTCAGAGGTGA 59.185 43.478 0.00 0.00 0.00 4.02
124 125 3.565482 TGCAAAAGCTTAACTCAGAGGTG 59.435 43.478 0.00 0.00 0.00 4.00
125 126 3.820557 TGCAAAAGCTTAACTCAGAGGT 58.179 40.909 0.00 0.00 0.00 3.85
126 127 4.036734 TGTTGCAAAAGCTTAACTCAGAGG 59.963 41.667 0.00 0.00 0.00 3.69
127 128 5.173774 TGTTGCAAAAGCTTAACTCAGAG 57.826 39.130 0.00 0.00 0.00 3.35
128 129 5.339990 GTTGTTGCAAAAGCTTAACTCAGA 58.660 37.500 0.00 0.00 0.00 3.27
129 130 4.204978 CGTTGTTGCAAAAGCTTAACTCAG 59.795 41.667 0.00 0.00 0.00 3.35
130 131 4.101942 CGTTGTTGCAAAAGCTTAACTCA 58.898 39.130 0.00 0.00 0.00 3.41
131 132 3.485743 CCGTTGTTGCAAAAGCTTAACTC 59.514 43.478 0.00 0.00 0.00 3.01
132 133 3.119280 ACCGTTGTTGCAAAAGCTTAACT 60.119 39.130 0.00 0.00 0.00 2.24
133 134 3.000177 CACCGTTGTTGCAAAAGCTTAAC 60.000 43.478 0.00 0.52 0.00 2.01
134 135 3.182967 CACCGTTGTTGCAAAAGCTTAA 58.817 40.909 0.00 0.00 0.00 1.85
135 136 2.480416 CCACCGTTGTTGCAAAAGCTTA 60.480 45.455 0.00 0.00 0.00 3.09
136 137 1.639280 CACCGTTGTTGCAAAAGCTT 58.361 45.000 0.00 0.00 0.00 3.74
137 138 0.179113 CCACCGTTGTTGCAAAAGCT 60.179 50.000 0.00 0.00 0.00 3.74
138 139 0.459411 ACCACCGTTGTTGCAAAAGC 60.459 50.000 0.00 0.00 0.00 3.51
139 140 1.276415 CACCACCGTTGTTGCAAAAG 58.724 50.000 0.00 0.00 0.00 2.27
140 141 0.603569 ACACCACCGTTGTTGCAAAA 59.396 45.000 0.00 0.00 0.00 2.44
141 142 0.603569 AACACCACCGTTGTTGCAAA 59.396 45.000 0.00 0.00 0.00 3.68
142 143 0.109086 CAACACCACCGTTGTTGCAA 60.109 50.000 0.00 0.00 41.12 4.08
143 144 1.508545 CAACACCACCGTTGTTGCA 59.491 52.632 3.70 0.00 41.12 4.08
144 145 4.393308 CAACACCACCGTTGTTGC 57.607 55.556 3.70 0.00 41.12 4.17
145 146 0.109086 TTGCAACACCACCGTTGTTG 60.109 50.000 10.51 10.51 46.47 3.33
146 147 0.603569 TTTGCAACACCACCGTTGTT 59.396 45.000 0.00 0.00 46.47 2.83
147 148 0.109039 GTTTGCAACACCACCGTTGT 60.109 50.000 0.00 0.00 46.47 3.32
149 150 0.603569 TTGTTTGCAACACCACCGTT 59.396 45.000 0.00 0.00 41.97 4.44
150 151 2.268022 TTGTTTGCAACACCACCGT 58.732 47.368 0.00 0.00 41.97 4.83
159 160 2.159448 CCTCGTTGTCTGTTGTTTGCAA 60.159 45.455 0.00 0.00 0.00 4.08
160 161 1.400142 CCTCGTTGTCTGTTGTTTGCA 59.600 47.619 0.00 0.00 0.00 4.08
161 162 1.859998 GCCTCGTTGTCTGTTGTTTGC 60.860 52.381 0.00 0.00 0.00 3.68
162 163 1.268539 GGCCTCGTTGTCTGTTGTTTG 60.269 52.381 0.00 0.00 0.00 2.93
163 164 1.021968 GGCCTCGTTGTCTGTTGTTT 58.978 50.000 0.00 0.00 0.00 2.83
164 165 1.157870 CGGCCTCGTTGTCTGTTGTT 61.158 55.000 0.00 0.00 0.00 2.83
165 166 1.594293 CGGCCTCGTTGTCTGTTGT 60.594 57.895 0.00 0.00 0.00 3.32
166 167 1.300620 TCGGCCTCGTTGTCTGTTG 60.301 57.895 0.00 0.00 37.69 3.33
167 168 1.300697 GTCGGCCTCGTTGTCTGTT 60.301 57.895 0.00 0.00 37.69 3.16
168 169 2.338984 GTCGGCCTCGTTGTCTGT 59.661 61.111 0.00 0.00 37.69 3.41
169 170 2.432628 GGTCGGCCTCGTTGTCTG 60.433 66.667 0.00 0.00 37.69 3.51
170 171 4.052229 CGGTCGGCCTCGTTGTCT 62.052 66.667 3.66 0.00 37.69 3.41
173 174 3.659089 AATCCGGTCGGCCTCGTTG 62.659 63.158 3.66 0.00 37.69 4.10
174 175 3.387947 AATCCGGTCGGCCTCGTT 61.388 61.111 3.66 0.00 37.69 3.85
175 176 4.143333 CAATCCGGTCGGCCTCGT 62.143 66.667 3.66 0.00 37.69 4.18
177 178 3.840102 TATTGCAATCCGGTCGGCCTC 62.840 57.143 16.86 0.00 34.68 4.70
178 179 1.978455 TATTGCAATCCGGTCGGCCT 61.978 55.000 16.86 0.00 34.68 5.19
179 180 0.889186 ATATTGCAATCCGGTCGGCC 60.889 55.000 16.86 0.00 34.68 6.13
180 181 0.951558 AATATTGCAATCCGGTCGGC 59.048 50.000 16.86 4.01 34.68 5.54
181 182 2.686558 CAATATTGCAATCCGGTCGG 57.313 50.000 16.86 2.52 0.00 4.79
193 194 4.202000 TGCAATCCAACTACCGCAATATTG 60.202 41.667 11.27 11.27 0.00 1.90
194 195 3.951037 TGCAATCCAACTACCGCAATATT 59.049 39.130 0.00 0.00 0.00 1.28
195 196 3.550820 TGCAATCCAACTACCGCAATAT 58.449 40.909 0.00 0.00 0.00 1.28
196 197 2.992593 TGCAATCCAACTACCGCAATA 58.007 42.857 0.00 0.00 0.00 1.90
197 198 1.832883 TGCAATCCAACTACCGCAAT 58.167 45.000 0.00 0.00 0.00 3.56
198 199 1.610363 TTGCAATCCAACTACCGCAA 58.390 45.000 0.00 0.00 37.05 4.85
199 200 1.832883 ATTGCAATCCAACTACCGCA 58.167 45.000 5.99 0.00 35.99 5.69
200 201 3.563808 TCATATTGCAATCCAACTACCGC 59.436 43.478 16.86 0.00 35.99 5.68
201 202 5.947228 ATCATATTGCAATCCAACTACCG 57.053 39.130 16.86 0.00 35.99 4.02
202 203 7.275888 TCAATCATATTGCAATCCAACTACC 57.724 36.000 16.86 0.00 35.99 3.18
203 204 8.355169 ACATCAATCATATTGCAATCCAACTAC 58.645 33.333 16.86 0.00 35.99 2.73
204 205 8.467963 ACATCAATCATATTGCAATCCAACTA 57.532 30.769 16.86 0.00 35.99 2.24
205 206 7.356089 ACATCAATCATATTGCAATCCAACT 57.644 32.000 16.86 0.00 35.99 3.16
206 207 7.517734 GCAACATCAATCATATTGCAATCCAAC 60.518 37.037 16.86 0.00 44.01 3.77
207 208 6.480651 GCAACATCAATCATATTGCAATCCAA 59.519 34.615 16.86 0.00 44.01 3.53
208 209 5.986741 GCAACATCAATCATATTGCAATCCA 59.013 36.000 16.86 0.00 44.01 3.41
209 210 5.118050 CGCAACATCAATCATATTGCAATCC 59.882 40.000 16.86 0.00 44.65 3.01
210 211 5.118050 CCGCAACATCAATCATATTGCAATC 59.882 40.000 16.86 0.00 44.65 2.67
211 212 4.986034 CCGCAACATCAATCATATTGCAAT 59.014 37.500 17.56 17.56 44.65 3.56
212 213 4.361420 CCGCAACATCAATCATATTGCAA 58.639 39.130 0.00 0.00 44.65 4.08
213 214 3.796165 GCCGCAACATCAATCATATTGCA 60.796 43.478 7.89 0.00 44.65 4.08
214 215 2.727798 GCCGCAACATCAATCATATTGC 59.272 45.455 0.00 0.00 41.74 3.56
215 216 3.243468 TGGCCGCAACATCAATCATATTG 60.243 43.478 0.00 0.00 0.00 1.90
216 217 2.957680 TGGCCGCAACATCAATCATATT 59.042 40.909 0.00 0.00 0.00 1.28
217 218 2.585330 TGGCCGCAACATCAATCATAT 58.415 42.857 0.00 0.00 0.00 1.78
218 219 2.049888 TGGCCGCAACATCAATCATA 57.950 45.000 0.00 0.00 0.00 2.15
219 220 1.135527 CTTGGCCGCAACATCAATCAT 59.864 47.619 0.00 0.00 0.00 2.45
220 221 0.527113 CTTGGCCGCAACATCAATCA 59.473 50.000 0.00 0.00 0.00 2.57
221 222 0.810648 TCTTGGCCGCAACATCAATC 59.189 50.000 0.00 0.00 0.00 2.67
222 223 0.527565 GTCTTGGCCGCAACATCAAT 59.472 50.000 0.00 0.00 0.00 2.57
223 224 1.851021 CGTCTTGGCCGCAACATCAA 61.851 55.000 0.00 0.00 0.00 2.57
224 225 2.324330 CGTCTTGGCCGCAACATCA 61.324 57.895 0.00 0.00 0.00 3.07
225 226 2.480555 CGTCTTGGCCGCAACATC 59.519 61.111 0.00 0.00 0.00 3.06
232 233 1.013596 TTGATATTGCGTCTTGGCCG 58.986 50.000 0.00 0.00 0.00 6.13
233 234 1.742831 TGTTGATATTGCGTCTTGGCC 59.257 47.619 0.00 0.00 0.00 5.36
234 235 3.065233 TCATGTTGATATTGCGTCTTGGC 59.935 43.478 0.00 0.00 0.00 4.52
235 236 4.880886 TCATGTTGATATTGCGTCTTGG 57.119 40.909 0.00 0.00 0.00 3.61
236 237 5.813717 ACATCATGTTGATATTGCGTCTTG 58.186 37.500 10.74 0.00 34.28 3.02
237 238 6.441093 AACATCATGTTGATATTGCGTCTT 57.559 33.333 0.98 0.00 39.45 3.01
250 251 1.069296 CCGTCGTTGCAACATCATGTT 60.069 47.619 28.01 0.00 42.08 2.71
251 252 0.516877 CCGTCGTTGCAACATCATGT 59.483 50.000 28.01 0.00 0.00 3.21
252 253 0.794229 GCCGTCGTTGCAACATCATG 60.794 55.000 28.01 15.84 0.00 3.07
253 254 1.501741 GCCGTCGTTGCAACATCAT 59.498 52.632 28.01 0.00 0.00 2.45
254 255 2.942879 GCCGTCGTTGCAACATCA 59.057 55.556 28.01 9.43 0.00 3.07
255 256 2.202171 CGCCGTCGTTGCAACATC 60.202 61.111 28.01 18.24 0.00 3.06
265 266 1.369930 ATGTTGCAAAACGCCGTCG 60.370 52.632 0.00 0.00 41.33 5.12
266 267 0.317436 TCATGTTGCAAAACGCCGTC 60.317 50.000 0.00 0.00 41.33 4.79
267 268 0.313672 ATCATGTTGCAAAACGCCGT 59.686 45.000 0.00 0.00 41.33 5.68
268 269 0.984109 GATCATGTTGCAAAACGCCG 59.016 50.000 0.00 0.00 41.33 6.46
269 270 2.063156 TGATCATGTTGCAAAACGCC 57.937 45.000 0.00 0.00 41.33 5.68
270 271 3.429543 ACATTGATCATGTTGCAAAACGC 59.570 39.130 0.00 0.00 44.40 4.84
280 281 4.683808 AGCTGCTGCAACATTGATCATGT 61.684 43.478 18.42 0.40 41.73 3.21
281 282 2.159240 AGCTGCTGCAACATTGATCATG 60.159 45.455 18.42 0.00 42.74 3.07
282 283 2.100197 AGCTGCTGCAACATTGATCAT 58.900 42.857 18.42 0.00 42.74 2.45
283 284 1.541379 AGCTGCTGCAACATTGATCA 58.459 45.000 18.42 0.00 42.74 2.92
284 285 2.421073 TGTAGCTGCTGCAACATTGATC 59.579 45.455 18.16 0.00 42.74 2.92
285 286 2.163010 GTGTAGCTGCTGCAACATTGAT 59.837 45.455 21.84 0.00 42.74 2.57
286 287 1.536766 GTGTAGCTGCTGCAACATTGA 59.463 47.619 21.84 0.00 42.74 2.57
287 288 1.538512 AGTGTAGCTGCTGCAACATTG 59.461 47.619 21.84 0.00 42.74 2.82
288 289 1.538512 CAGTGTAGCTGCTGCAACATT 59.461 47.619 21.84 7.57 42.74 2.71
289 290 1.162698 CAGTGTAGCTGCTGCAACAT 58.837 50.000 21.84 8.59 42.74 2.71
290 291 2.620562 CAGTGTAGCTGCTGCAACA 58.379 52.632 21.84 10.76 42.74 3.33
298 299 8.274259 ACATTGATCATGTTGCAGTGTAGCTG 62.274 42.308 0.00 0.00 44.40 4.24
299 300 3.339253 TGATCATGTTGCAGTGTAGCT 57.661 42.857 0.00 0.00 34.99 3.32
300 301 4.142534 ACATTGATCATGTTGCAGTGTAGC 60.143 41.667 0.00 0.00 44.40 3.58
301 302 5.556355 ACATTGATCATGTTGCAGTGTAG 57.444 39.130 0.00 0.00 44.40 2.74
312 313 1.328374 TCGAGCGCAACATTGATCATG 59.672 47.619 11.47 0.00 39.07 3.07
313 314 1.655484 TCGAGCGCAACATTGATCAT 58.345 45.000 11.47 0.00 0.00 2.45
314 315 1.128507 GTTCGAGCGCAACATTGATCA 59.871 47.619 11.47 0.00 0.00 2.92
315 316 1.394917 AGTTCGAGCGCAACATTGATC 59.605 47.619 11.47 0.00 0.00 2.92
316 317 1.442769 AGTTCGAGCGCAACATTGAT 58.557 45.000 11.47 0.00 0.00 2.57
317 318 1.724623 GTAGTTCGAGCGCAACATTGA 59.275 47.619 11.47 0.00 0.00 2.57
318 319 1.201921 GGTAGTTCGAGCGCAACATTG 60.202 52.381 11.47 0.00 0.00 2.82
319 320 1.076332 GGTAGTTCGAGCGCAACATT 58.924 50.000 11.47 0.00 0.00 2.71
320 321 1.076533 CGGTAGTTCGAGCGCAACAT 61.077 55.000 11.47 0.00 33.05 2.71
321 322 1.731613 CGGTAGTTCGAGCGCAACA 60.732 57.895 11.47 0.00 33.05 3.33
322 323 3.070060 CGGTAGTTCGAGCGCAAC 58.930 61.111 11.47 5.43 33.05 4.17
362 363 1.795768 TGGCAAAGATCGTCAGTCAC 58.204 50.000 0.00 0.00 0.00 3.67
363 364 2.542020 TTGGCAAAGATCGTCAGTCA 57.458 45.000 0.00 0.00 0.00 3.41
364 365 3.896648 TTTTGGCAAAGATCGTCAGTC 57.103 42.857 13.04 0.00 0.00 3.51
365 366 4.278170 TGATTTTTGGCAAAGATCGTCAGT 59.722 37.500 27.92 6.22 0.00 3.41
366 367 4.797471 TGATTTTTGGCAAAGATCGTCAG 58.203 39.130 27.92 0.00 0.00 3.51
367 368 4.797471 CTGATTTTTGGCAAAGATCGTCA 58.203 39.130 27.92 17.34 0.00 4.35
368 369 3.609807 GCTGATTTTTGGCAAAGATCGTC 59.390 43.478 27.92 20.93 0.00 4.20
369 370 3.578688 GCTGATTTTTGGCAAAGATCGT 58.421 40.909 27.92 6.85 0.00 3.73
370 371 2.925563 GGCTGATTTTTGGCAAAGATCG 59.074 45.455 27.92 23.82 0.00 3.69
371 372 2.925563 CGGCTGATTTTTGGCAAAGATC 59.074 45.455 27.52 27.52 0.00 2.75
372 373 2.354003 CCGGCTGATTTTTGGCAAAGAT 60.354 45.455 15.06 15.06 0.00 2.40
373 374 1.000731 CCGGCTGATTTTTGGCAAAGA 59.999 47.619 13.04 9.34 0.00 2.52
374 375 1.431496 CCGGCTGATTTTTGGCAAAG 58.569 50.000 13.04 2.00 0.00 2.77
375 376 0.602372 GCCGGCTGATTTTTGGCAAA 60.602 50.000 22.15 8.93 45.06 3.68
376 377 1.005156 GCCGGCTGATTTTTGGCAA 60.005 52.632 22.15 0.00 45.06 4.52
377 378 2.656055 GCCGGCTGATTTTTGGCA 59.344 55.556 22.15 0.00 45.06 4.92
378 379 2.125552 GGCCGGCTGATTTTTGGC 60.126 61.111 28.56 0.41 44.98 4.52
379 380 2.181525 CGGCCGGCTGATTTTTGG 59.818 61.111 32.31 2.04 0.00 3.28
380 381 1.137404 CTCGGCCGGCTGATTTTTG 59.863 57.895 37.10 21.77 0.00 2.44
381 382 2.046285 CCTCGGCCGGCTGATTTTT 61.046 57.895 37.10 0.00 0.00 1.94
382 383 2.438434 CCTCGGCCGGCTGATTTT 60.438 61.111 37.10 0.00 0.00 1.82
436 437 1.299926 GGCCTCCATACGTGCGTAG 60.300 63.158 10.23 0.00 33.77 3.51
437 438 2.809706 GGCCTCCATACGTGCGTA 59.190 61.111 6.91 6.91 34.87 4.42
438 439 4.508128 CGGCCTCCATACGTGCGT 62.508 66.667 0.00 2.05 0.00 5.24
440 441 4.910585 CCCGGCCTCCATACGTGC 62.911 72.222 0.00 0.00 0.00 5.34
441 442 4.910585 GCCCGGCCTCCATACGTG 62.911 72.222 0.00 0.00 0.00 4.49
456 457 3.861263 GATCGTTTCGGGTGCGCC 61.861 66.667 8.12 8.12 0.00 6.53
457 458 3.861263 GGATCGTTTCGGGTGCGC 61.861 66.667 0.00 0.00 0.00 6.09
458 459 1.693083 GAAGGATCGTTTCGGGTGCG 61.693 60.000 1.57 0.00 0.00 5.34
459 460 0.391263 AGAAGGATCGTTTCGGGTGC 60.391 55.000 1.57 0.00 0.00 5.01
460 461 1.732259 CAAGAAGGATCGTTTCGGGTG 59.268 52.381 1.57 0.35 0.00 4.61
461 462 1.338769 CCAAGAAGGATCGTTTCGGGT 60.339 52.381 1.57 0.00 41.22 5.28
462 463 1.338769 ACCAAGAAGGATCGTTTCGGG 60.339 52.381 1.57 10.29 41.22 5.14
463 464 2.094762 ACCAAGAAGGATCGTTTCGG 57.905 50.000 1.57 6.09 41.22 4.30
464 465 3.496884 TCAAACCAAGAAGGATCGTTTCG 59.503 43.478 1.57 0.00 41.22 3.46
465 466 5.393962 CATCAAACCAAGAAGGATCGTTTC 58.606 41.667 1.57 1.50 41.22 2.78
466 467 4.218417 CCATCAAACCAAGAAGGATCGTTT 59.782 41.667 1.57 0.00 41.22 3.60
467 468 3.758554 CCATCAAACCAAGAAGGATCGTT 59.241 43.478 0.00 0.00 41.22 3.85
468 469 3.244911 ACCATCAAACCAAGAAGGATCGT 60.245 43.478 0.00 0.00 41.22 3.73
469 470 3.347216 ACCATCAAACCAAGAAGGATCG 58.653 45.455 0.00 0.00 41.22 3.69
470 471 5.011023 ACAAACCATCAAACCAAGAAGGATC 59.989 40.000 0.00 0.00 41.22 3.36
471 472 4.901250 ACAAACCATCAAACCAAGAAGGAT 59.099 37.500 0.00 0.00 41.22 3.24
472 473 4.099266 CACAAACCATCAAACCAAGAAGGA 59.901 41.667 0.00 0.00 41.22 3.36
473 474 4.141959 ACACAAACCATCAAACCAAGAAGG 60.142 41.667 0.00 0.00 45.67 3.46
474 475 5.009854 ACACAAACCATCAAACCAAGAAG 57.990 39.130 0.00 0.00 0.00 2.85
475 476 5.654650 AGTACACAAACCATCAAACCAAGAA 59.345 36.000 0.00 0.00 0.00 2.52
476 477 5.197451 AGTACACAAACCATCAAACCAAGA 58.803 37.500 0.00 0.00 0.00 3.02
477 478 5.507315 GGAGTACACAAACCATCAAACCAAG 60.507 44.000 0.00 0.00 0.00 3.61
478 479 4.339814 GGAGTACACAAACCATCAAACCAA 59.660 41.667 0.00 0.00 0.00 3.67
479 480 3.886505 GGAGTACACAAACCATCAAACCA 59.113 43.478 0.00 0.00 0.00 3.67
480 481 3.254903 GGGAGTACACAAACCATCAAACC 59.745 47.826 0.00 0.00 0.00 3.27
481 482 4.142038 AGGGAGTACACAAACCATCAAAC 58.858 43.478 0.00 0.00 0.00 2.93
482 483 4.394729 GAGGGAGTACACAAACCATCAAA 58.605 43.478 0.00 0.00 34.09 2.69
483 484 3.244770 GGAGGGAGTACACAAACCATCAA 60.245 47.826 0.00 0.00 35.34 2.57
484 485 2.304761 GGAGGGAGTACACAAACCATCA 59.695 50.000 0.00 0.00 35.34 3.07
485 486 2.677037 CGGAGGGAGTACACAAACCATC 60.677 54.545 0.00 0.00 33.31 3.51
486 487 1.278127 CGGAGGGAGTACACAAACCAT 59.722 52.381 0.00 0.00 0.00 3.55
487 488 0.682852 CGGAGGGAGTACACAAACCA 59.317 55.000 0.00 0.00 0.00 3.67
488 489 0.683412 ACGGAGGGAGTACACAAACC 59.317 55.000 0.00 0.00 0.00 3.27
489 490 2.538512 AACGGAGGGAGTACACAAAC 57.461 50.000 0.00 0.00 0.00 2.93
490 491 3.564053 AAAACGGAGGGAGTACACAAA 57.436 42.857 0.00 0.00 0.00 2.83
491 492 3.564053 AAAAACGGAGGGAGTACACAA 57.436 42.857 0.00 0.00 0.00 3.33
492 493 4.895668 ATAAAAACGGAGGGAGTACACA 57.104 40.909 0.00 0.00 0.00 3.72
493 494 6.875726 AGTAAATAAAAACGGAGGGAGTACAC 59.124 38.462 0.00 0.00 0.00 2.90
494 495 7.008021 AGTAAATAAAAACGGAGGGAGTACA 57.992 36.000 0.00 0.00 0.00 2.90
495 496 7.277319 CAGAGTAAATAAAAACGGAGGGAGTAC 59.723 40.741 0.00 0.00 0.00 2.73
496 497 7.325694 CAGAGTAAATAAAAACGGAGGGAGTA 58.674 38.462 0.00 0.00 0.00 2.59
497 498 6.171213 CAGAGTAAATAAAAACGGAGGGAGT 58.829 40.000 0.00 0.00 0.00 3.85
498 499 5.064834 GCAGAGTAAATAAAAACGGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
499 500 4.939439 GCAGAGTAAATAAAAACGGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
500 501 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
501 502 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
517 518 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
518 519 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
519 520 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
547 548 9.807386 CTATAAACTTGGTCAAACTTTACGAAG 57.193 33.333 0.00 0.00 37.43 3.79
548 549 9.545105 TCTATAAACTTGGTCAAACTTTACGAA 57.455 29.630 0.00 0.00 0.00 3.85
549 550 9.545105 TTCTATAAACTTGGTCAAACTTTACGA 57.455 29.630 0.00 0.00 0.00 3.43
685 686 6.253512 GTCAAGCTTTACAAACTTTGACCAAG 59.746 38.462 8.55 7.77 38.64 3.61
686 687 6.071616 AGTCAAGCTTTACAAACTTTGACCAA 60.072 34.615 13.07 0.00 0.00 3.67
687 688 5.417580 AGTCAAGCTTTACAAACTTTGACCA 59.582 36.000 13.07 0.00 0.00 4.02
688 689 5.891451 AGTCAAGCTTTACAAACTTTGACC 58.109 37.500 13.07 0.00 0.00 4.02
689 690 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
692 693 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
693 694 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
694 695 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
695 696 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
696 697 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
697 698 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
698 699 5.906113 TTTGGTCAAAGTCAAGCTTTACA 57.094 34.783 13.07 0.00 44.95 2.41
699 700 6.330278 AGTTTTGGTCAAAGTCAAGCTTTAC 58.670 36.000 2.40 2.40 44.95 2.01
700 701 6.524101 AGTTTTGGTCAAAGTCAAGCTTTA 57.476 33.333 0.00 0.00 44.95 1.85
702 703 6.071616 TGTTAGTTTTGGTCAAAGTCAAGCTT 60.072 34.615 0.00 0.00 39.52 3.74
703 704 5.417580 TGTTAGTTTTGGTCAAAGTCAAGCT 59.582 36.000 0.00 0.00 30.16 3.74
704 705 5.646606 TGTTAGTTTTGGTCAAAGTCAAGC 58.353 37.500 0.00 0.00 30.16 4.01
705 706 6.198966 GCATGTTAGTTTTGGTCAAAGTCAAG 59.801 38.462 0.00 0.00 30.16 3.02
706 707 6.039616 GCATGTTAGTTTTGGTCAAAGTCAA 58.960 36.000 0.00 0.00 30.16 3.18
707 708 5.126222 TGCATGTTAGTTTTGGTCAAAGTCA 59.874 36.000 0.00 0.00 30.16 3.41
708 709 5.587289 TGCATGTTAGTTTTGGTCAAAGTC 58.413 37.500 0.00 0.00 30.16 3.01
709 710 5.590530 TGCATGTTAGTTTTGGTCAAAGT 57.409 34.783 0.00 0.00 32.41 2.66
710 711 6.534793 AGTTTGCATGTTAGTTTTGGTCAAAG 59.465 34.615 0.00 0.00 0.00 2.77
711 712 6.402222 AGTTTGCATGTTAGTTTTGGTCAAA 58.598 32.000 0.00 0.00 0.00 2.69
712 713 5.971763 AGTTTGCATGTTAGTTTTGGTCAA 58.028 33.333 0.00 0.00 0.00 3.18
713 714 5.590530 AGTTTGCATGTTAGTTTTGGTCA 57.409 34.783 0.00 0.00 0.00 4.02
714 715 7.995463 TTTAGTTTGCATGTTAGTTTTGGTC 57.005 32.000 0.00 0.00 0.00 4.02
721 722 9.187455 CCGTTTTTATTTAGTTTGCATGTTAGT 57.813 29.630 0.00 0.00 0.00 2.24
722 723 9.400638 TCCGTTTTTATTTAGTTTGCATGTTAG 57.599 29.630 0.00 0.00 0.00 2.34
723 724 9.400638 CTCCGTTTTTATTTAGTTTGCATGTTA 57.599 29.630 0.00 0.00 0.00 2.41
724 725 7.383843 CCTCCGTTTTTATTTAGTTTGCATGTT 59.616 33.333 0.00 0.00 0.00 2.71
725 726 6.866248 CCTCCGTTTTTATTTAGTTTGCATGT 59.134 34.615 0.00 0.00 0.00 3.21
726 727 6.310224 CCCTCCGTTTTTATTTAGTTTGCATG 59.690 38.462 0.00 0.00 0.00 4.06
727 728 6.209788 TCCCTCCGTTTTTATTTAGTTTGCAT 59.790 34.615 0.00 0.00 0.00 3.96
728 729 5.535406 TCCCTCCGTTTTTATTTAGTTTGCA 59.465 36.000 0.00 0.00 0.00 4.08
729 730 6.016213 TCCCTCCGTTTTTATTTAGTTTGC 57.984 37.500 0.00 0.00 0.00 3.68
730 731 7.210718 ACTCCCTCCGTTTTTATTTAGTTTG 57.789 36.000 0.00 0.00 0.00 2.93
731 732 9.524496 AATACTCCCTCCGTTTTTATTTAGTTT 57.476 29.630 0.00 0.00 0.00 2.66
732 733 9.524496 AAATACTCCCTCCGTTTTTATTTAGTT 57.476 29.630 0.00 0.00 0.00 2.24
733 734 9.170734 GAAATACTCCCTCCGTTTTTATTTAGT 57.829 33.333 0.00 0.00 0.00 2.24
734 735 9.392259 AGAAATACTCCCTCCGTTTTTATTTAG 57.608 33.333 0.00 0.00 0.00 1.85
735 736 9.387257 GAGAAATACTCCCTCCGTTTTTATTTA 57.613 33.333 0.00 0.00 39.53 1.40
736 737 7.886446 TGAGAAATACTCCCTCCGTTTTTATTT 59.114 33.333 0.00 0.00 44.34 1.40
737 738 7.399634 TGAGAAATACTCCCTCCGTTTTTATT 58.600 34.615 0.00 0.00 44.34 1.40
738 739 6.954232 TGAGAAATACTCCCTCCGTTTTTAT 58.046 36.000 0.00 0.00 44.34 1.40
739 740 6.363167 TGAGAAATACTCCCTCCGTTTTTA 57.637 37.500 0.00 0.00 44.34 1.52
740 741 5.237236 TGAGAAATACTCCCTCCGTTTTT 57.763 39.130 0.00 0.00 44.34 1.94
741 742 4.903045 TGAGAAATACTCCCTCCGTTTT 57.097 40.909 0.00 0.00 44.34 2.43
742 743 4.903045 TTGAGAAATACTCCCTCCGTTT 57.097 40.909 0.00 0.00 44.34 3.60
743 744 4.903045 TTTGAGAAATACTCCCTCCGTT 57.097 40.909 0.00 0.00 44.34 4.44
744 745 4.903045 TTTTGAGAAATACTCCCTCCGT 57.097 40.909 0.00 0.00 44.34 4.69
767 768 2.559231 ACACACACGGTCAAACCTTTTT 59.441 40.909 0.00 0.00 35.66 1.94
768 769 2.164338 ACACACACGGTCAAACCTTTT 58.836 42.857 0.00 0.00 35.66 2.27
769 770 1.828979 ACACACACGGTCAAACCTTT 58.171 45.000 0.00 0.00 35.66 3.11
770 771 2.282407 GTACACACACGGTCAAACCTT 58.718 47.619 0.00 0.00 35.66 3.50
771 772 1.803625 CGTACACACACGGTCAAACCT 60.804 52.381 0.00 0.00 38.26 3.50
772 773 0.578211 CGTACACACACGGTCAAACC 59.422 55.000 0.00 0.00 38.26 3.27
773 774 0.042794 GCGTACACACACGGTCAAAC 60.043 55.000 0.00 0.00 42.18 2.93
774 775 1.481019 CGCGTACACACACGGTCAAA 61.481 55.000 0.00 0.00 42.18 2.69
775 776 1.945169 CGCGTACACACACGGTCAA 60.945 57.895 0.00 0.00 42.18 3.18
776 777 1.780025 TACGCGTACACACACGGTCA 61.780 55.000 16.41 0.00 42.18 4.02
777 778 1.082169 TACGCGTACACACACGGTC 60.082 57.895 16.41 0.00 42.18 4.79
778 779 1.370414 GTACGCGTACACACACGGT 60.370 57.895 37.28 3.51 42.18 4.83
779 780 2.419895 CGTACGCGTACACACACGG 61.420 63.158 39.22 22.68 42.18 4.94
780 781 3.046858 CGTACGCGTACACACACG 58.953 61.111 39.22 27.92 44.71 4.49
790 791 1.898938 TCCAAGATGTAACGTACGCG 58.101 50.000 16.72 3.53 44.93 6.01
791 792 2.346545 GGTTCCAAGATGTAACGTACGC 59.653 50.000 16.72 0.00 0.00 4.42
792 793 2.925563 GGGTTCCAAGATGTAACGTACG 59.074 50.000 15.01 15.01 0.00 3.67
793 794 3.929094 TGGGTTCCAAGATGTAACGTAC 58.071 45.455 0.00 0.00 0.00 3.67
794 795 4.620589 TTGGGTTCCAAGATGTAACGTA 57.379 40.909 0.00 0.00 38.75 3.57
795 796 3.495434 TTGGGTTCCAAGATGTAACGT 57.505 42.857 0.00 0.00 38.75 3.99
808 809 4.481112 CATGCGCGGCTTGGGTTC 62.481 66.667 8.83 0.00 31.40 3.62
956 962 1.310904 GACGGTGGGTCTAGCTCTAG 58.689 60.000 0.00 0.00 42.62 2.43
1059 1065 0.901124 ACTCGCTGCTCTTCTTCCAT 59.099 50.000 0.00 0.00 0.00 3.41
1209 2541 2.650116 GGTCTCCTCCTGCTTGCGA 61.650 63.158 0.00 0.00 0.00 5.10
1393 2731 1.848932 TACTGCTGCTTCGTCGTCGT 61.849 55.000 0.00 0.00 38.33 4.34
1396 2734 0.387367 CACTACTGCTGCTTCGTCGT 60.387 55.000 0.00 0.00 0.00 4.34
1415 2753 3.470567 CTTCAGGACGACGCACGC 61.471 66.667 0.00 0.00 46.94 5.34
1432 2770 1.731969 ACGAACGCACGCTTAGGAC 60.732 57.895 0.00 0.00 36.70 3.85
1588 2929 0.680618 TCCAACGGTTATCACACGGT 59.319 50.000 0.00 0.00 0.00 4.83
1693 6139 1.348696 TGGAGATGTGTGCTCATGTGT 59.651 47.619 0.00 0.00 34.07 3.72
1716 6162 8.107399 AGTAGTATATATAAACAGAGCGCACA 57.893 34.615 11.47 0.00 0.00 4.57
1735 6181 6.363065 ACATTATGAGACGAAGGGAGTAGTA 58.637 40.000 0.00 0.00 0.00 1.82
1736 6182 5.202004 ACATTATGAGACGAAGGGAGTAGT 58.798 41.667 0.00 0.00 0.00 2.73
1737 6183 5.776173 ACATTATGAGACGAAGGGAGTAG 57.224 43.478 0.00 0.00 0.00 2.57
1738 6184 7.649533 TTTACATTATGAGACGAAGGGAGTA 57.350 36.000 0.00 0.00 0.00 2.59
1740 6186 6.019801 CGTTTTACATTATGAGACGAAGGGAG 60.020 42.308 0.00 0.00 0.00 4.30
1741 6187 5.808540 CGTTTTACATTATGAGACGAAGGGA 59.191 40.000 0.00 0.00 0.00 4.20
1743 6189 6.642683 ACGTTTTACATTATGAGACGAAGG 57.357 37.500 15.89 5.94 33.67 3.46
1744 6190 8.928844 AAAACGTTTTACATTATGAGACGAAG 57.071 30.769 24.13 0.47 33.67 3.79
1838 6284 9.822185 GGCAAATATGAACCTGAAAAATAATCT 57.178 29.630 0.00 0.00 0.00 2.40
1839 6285 8.755018 CGGCAAATATGAACCTGAAAAATAATC 58.245 33.333 0.00 0.00 0.00 1.75
1840 6286 8.474025 TCGGCAAATATGAACCTGAAAAATAAT 58.526 29.630 0.00 0.00 0.00 1.28
1843 6289 6.279513 TCGGCAAATATGAACCTGAAAAAT 57.720 33.333 0.00 0.00 0.00 1.82
1978 6430 1.699634 TCTGAACTCCTTTCCCCACAG 59.300 52.381 0.00 0.00 32.58 3.66
2008 6460 6.892310 ACAAACTTCAAAATTGTTGAGCTC 57.108 33.333 6.82 6.82 33.73 4.09
2143 9594 4.408921 TCGAATGAGGGGAACATACAAGAT 59.591 41.667 0.00 0.00 0.00 2.40
2161 9612 8.722480 TCAACACAAATCTGATAATCTCGAAT 57.278 30.769 0.00 0.00 0.00 3.34
2164 9615 7.531280 ACTCAACACAAATCTGATAATCTCG 57.469 36.000 0.00 0.00 0.00 4.04
2231 9682 3.552384 ACACCGCCGGAAACCTCA 61.552 61.111 11.71 0.00 0.00 3.86
2238 9689 2.124653 AAAACACACACCGCCGGA 60.125 55.556 11.71 0.00 0.00 5.14
2241 9692 1.803943 TGTGAAAACACACACCGCC 59.196 52.632 0.00 0.00 44.29 6.13
2281 9743 7.088905 CAGTTTTACGAGAGTTAGGTGTATGT 58.911 38.462 0.00 0.00 46.40 2.29
2283 9745 6.071503 AGCAGTTTTACGAGAGTTAGGTGTAT 60.072 38.462 0.00 0.00 46.40 2.29
2288 9750 6.541111 AAAAGCAGTTTTACGAGAGTTAGG 57.459 37.500 0.00 0.00 46.40 2.69
2324 9786 6.544038 ACATTTCAAAGTTAAAGCCATTGC 57.456 33.333 0.00 0.00 37.95 3.56
2364 9826 8.533569 AATATTAGTAGGGATGGTTGTTTTGG 57.466 34.615 0.00 0.00 0.00 3.28
2381 9844 4.751060 TCACTCGCAACCGAAATATTAGT 58.249 39.130 0.00 0.00 43.87 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.