Multiple sequence alignment - TraesCS1A01G242100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G242100 chr1A 100.000 3830 0 0 1 3830 430230703 430234532 0.000000e+00 7073.0
1 TraesCS1A01G242100 chr1B 95.395 2758 89 10 707 3459 447317473 447320197 0.000000e+00 4355.0
2 TraesCS1A01G242100 chr1B 93.016 315 20 2 3470 3782 447320970 447321284 3.490000e-125 459.0
3 TraesCS1A01G242100 chr1D 93.920 2023 95 15 696 2705 332568822 332570829 0.000000e+00 3029.0
4 TraesCS1A01G242100 chr1D 92.103 975 51 15 2489 3459 332570694 332571646 0.000000e+00 1351.0
5 TraesCS1A01G242100 chr1D 89.620 395 35 2 221 610 481680918 481681311 7.390000e-137 497.0
6 TraesCS1A01G242100 chr1D 91.772 316 21 3 3470 3780 332572154 332572469 5.880000e-118 435.0
7 TraesCS1A01G242100 chr6D 90.452 398 27 4 221 612 84625314 84625706 7.340000e-142 514.0
8 TraesCS1A01G242100 chr2D 90.000 400 31 5 221 613 121768391 121767994 3.410000e-140 508.0
9 TraesCS1A01G242100 chr4A 89.750 400 33 4 221 612 56291538 56291937 4.420000e-139 505.0
10 TraesCS1A01G242100 chr5D 89.873 395 32 4 222 610 473446130 473446522 5.710000e-138 501.0
11 TraesCS1A01G242100 chr3A 89.646 396 30 3 221 610 127967562 127967172 9.560000e-136 494.0
12 TraesCS1A01G242100 chr7A 89.196 398 37 3 221 612 78654632 78654235 3.440000e-135 492.0
13 TraesCS1A01G242100 chr7A 89.223 399 36 4 221 612 83225404 83225802 3.440000e-135 492.0
14 TraesCS1A01G242100 chr5A 88.670 406 38 4 213 612 683661645 683661242 4.450000e-134 488.0
15 TraesCS1A01G242100 chr2B 87.500 56 6 1 3 57 371169773 371169718 3.190000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G242100 chr1A 430230703 430234532 3829 False 7073 7073 100.000000 1 3830 1 chr1A.!!$F1 3829
1 TraesCS1A01G242100 chr1B 447317473 447321284 3811 False 2407 4355 94.205500 707 3782 2 chr1B.!!$F1 3075
2 TraesCS1A01G242100 chr1D 332568822 332572469 3647 False 1605 3029 92.598333 696 3780 3 chr1D.!!$F2 3084


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 385 0.027586 GCAAATATGGACGCGTGGAC 59.972 55.0 20.70 7.46 0.00 4.02 F
558 559 0.105964 CTGGTCGACCCAAACAGACA 59.894 55.0 31.19 8.71 44.65 3.41 F
601 602 0.108041 GTTTAGATCGGCCCGTTGGA 60.108 55.0 1.63 0.00 0.00 3.53 F
602 603 0.177141 TTTAGATCGGCCCGTTGGAG 59.823 55.0 1.63 0.00 0.00 3.86 F
677 678 0.179200 CGGACGCCGGAGAAAATTTG 60.179 55.0 13.83 0.00 44.15 2.32 F
701 702 0.462047 CGTAGATGCCCTTCCACCAC 60.462 60.0 0.00 0.00 0.00 4.16 F
2543 2556 0.809241 GCCGATGGAGTGCAAGAGAG 60.809 60.0 0.00 0.00 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2167 0.687757 AGGTCGCATCTGCCTCCTTA 60.688 55.000 6.89 0.0 37.35 2.69 R
2169 2182 1.298014 CACCAGCTCCTCCAAGGTC 59.702 63.158 0.00 0.0 36.53 3.85 R
2424 2437 2.225727 CCTTTCAACTTTACCGAGTGCC 59.774 50.000 0.00 0.0 0.00 5.01 R
2452 2465 3.506844 TGCTTGATGCTTGCATCTAAACA 59.493 39.130 28.44 20.5 43.37 2.83 R
2659 2789 3.013219 GGATCTGCCCTGTCTTTTCTTC 58.987 50.000 0.00 0.0 0.00 2.87 R
2708 2838 0.320421 TTCTTGGACTTTCTCCGGCG 60.320 55.000 0.00 0.0 43.03 6.46 R
3794 4828 0.037790 GCCGGCAAAAGCAATACCAA 60.038 50.000 24.80 0.0 0.00 3.67 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.460648 GGAGACGACAAATGGAGGG 57.539 57.895 0.00 0.00 0.00 4.30
19 20 0.107654 GGAGACGACAAATGGAGGGG 60.108 60.000 0.00 0.00 0.00 4.79
20 21 0.107654 GAGACGACAAATGGAGGGGG 60.108 60.000 0.00 0.00 0.00 5.40
21 22 0.840722 AGACGACAAATGGAGGGGGT 60.841 55.000 0.00 0.00 0.00 4.95
22 23 0.676782 GACGACAAATGGAGGGGGTG 60.677 60.000 0.00 0.00 0.00 4.61
23 24 1.378514 CGACAAATGGAGGGGGTGG 60.379 63.158 0.00 0.00 0.00 4.61
24 25 1.774300 GACAAATGGAGGGGGTGGT 59.226 57.895 0.00 0.00 0.00 4.16
25 26 0.611896 GACAAATGGAGGGGGTGGTG 60.612 60.000 0.00 0.00 0.00 4.17
26 27 1.368268 ACAAATGGAGGGGGTGGTGT 61.368 55.000 0.00 0.00 0.00 4.16
27 28 0.701731 CAAATGGAGGGGGTGGTGTA 59.298 55.000 0.00 0.00 0.00 2.90
28 29 0.999712 AAATGGAGGGGGTGGTGTAG 59.000 55.000 0.00 0.00 0.00 2.74
29 30 0.919289 AATGGAGGGGGTGGTGTAGG 60.919 60.000 0.00 0.00 0.00 3.18
30 31 1.833055 ATGGAGGGGGTGGTGTAGGA 61.833 60.000 0.00 0.00 0.00 2.94
31 32 1.229723 GGAGGGGGTGGTGTAGGAA 60.230 63.158 0.00 0.00 0.00 3.36
32 33 1.272554 GGAGGGGGTGGTGTAGGAAG 61.273 65.000 0.00 0.00 0.00 3.46
33 34 1.229853 AGGGGGTGGTGTAGGAAGG 60.230 63.158 0.00 0.00 0.00 3.46
34 35 2.306384 GGGGGTGGTGTAGGAAGGG 61.306 68.421 0.00 0.00 0.00 3.95
35 36 1.229723 GGGGTGGTGTAGGAAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
36 37 0.843343 GGGGTGGTGTAGGAAGGGAA 60.843 60.000 0.00 0.00 0.00 3.97
37 38 0.327259 GGGTGGTGTAGGAAGGGAAC 59.673 60.000 0.00 0.00 0.00 3.62
38 39 1.061546 GGTGGTGTAGGAAGGGAACA 58.938 55.000 0.00 0.00 0.00 3.18
39 40 1.422402 GGTGGTGTAGGAAGGGAACAA 59.578 52.381 0.00 0.00 0.00 2.83
40 41 2.501261 GTGGTGTAGGAAGGGAACAAC 58.499 52.381 0.00 0.00 0.00 3.32
41 42 2.128535 TGGTGTAGGAAGGGAACAACA 58.871 47.619 0.00 0.00 38.46 3.33
42 43 2.510382 TGGTGTAGGAAGGGAACAACAA 59.490 45.455 0.00 0.00 37.86 2.83
43 44 3.146847 GGTGTAGGAAGGGAACAACAAG 58.853 50.000 0.00 0.00 31.05 3.16
44 45 3.146847 GTGTAGGAAGGGAACAACAAGG 58.853 50.000 0.00 0.00 0.00 3.61
45 46 2.107552 TGTAGGAAGGGAACAACAAGGG 59.892 50.000 0.00 0.00 0.00 3.95
46 47 0.178961 AGGAAGGGAACAACAAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
47 48 0.178961 GGAAGGGAACAACAAGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
48 49 1.704641 GAAGGGAACAACAAGGGCTT 58.295 50.000 0.00 0.00 0.00 4.35
49 50 1.341209 GAAGGGAACAACAAGGGCTTG 59.659 52.381 0.00 0.00 45.58 4.01
50 51 0.469892 AGGGAACAACAAGGGCTTGG 60.470 55.000 0.00 0.00 44.45 3.61
51 52 0.469144 GGGAACAACAAGGGCTTGGA 60.469 55.000 0.00 0.00 44.45 3.53
52 53 1.632589 GGAACAACAAGGGCTTGGAT 58.367 50.000 0.00 0.00 44.45 3.41
53 54 1.273327 GGAACAACAAGGGCTTGGATG 59.727 52.381 0.00 0.00 44.45 3.51
54 55 1.963515 GAACAACAAGGGCTTGGATGT 59.036 47.619 0.00 0.00 44.45 3.06
55 56 1.620822 ACAACAAGGGCTTGGATGTC 58.379 50.000 0.00 0.00 44.45 3.06
56 57 0.523072 CAACAAGGGCTTGGATGTCG 59.477 55.000 0.00 0.00 44.45 4.35
57 58 0.110486 AACAAGGGCTTGGATGTCGT 59.890 50.000 0.00 0.00 44.45 4.34
58 59 0.321653 ACAAGGGCTTGGATGTCGTC 60.322 55.000 0.00 0.00 44.45 4.20
59 60 1.079127 AAGGGCTTGGATGTCGTCG 60.079 57.895 0.00 0.00 0.00 5.12
60 61 1.541310 AAGGGCTTGGATGTCGTCGA 61.541 55.000 0.00 0.00 0.00 4.20
61 62 1.144057 GGGCTTGGATGTCGTCGAT 59.856 57.895 0.00 0.00 0.00 3.59
62 63 0.876342 GGGCTTGGATGTCGTCGATC 60.876 60.000 0.00 0.00 0.00 3.69
63 64 1.209275 GGCTTGGATGTCGTCGATCG 61.209 60.000 9.36 9.36 41.41 3.69
64 65 1.812214 GCTTGGATGTCGTCGATCGC 61.812 60.000 11.09 4.79 39.67 4.58
65 66 1.209275 CTTGGATGTCGTCGATCGCC 61.209 60.000 11.09 4.38 39.67 5.54
66 67 2.726180 GGATGTCGTCGATCGCCG 60.726 66.667 13.05 13.05 39.67 6.46
67 68 2.024305 GATGTCGTCGATCGCCGT 59.976 61.111 18.67 0.00 39.75 5.68
68 69 1.585521 GATGTCGTCGATCGCCGTT 60.586 57.895 18.67 4.84 39.75 4.44
69 70 1.798368 GATGTCGTCGATCGCCGTTG 61.798 60.000 18.67 2.25 39.75 4.10
70 71 2.503375 GTCGTCGATCGCCGTTGT 60.503 61.111 18.67 0.00 39.75 3.32
71 72 2.084681 GTCGTCGATCGCCGTTGTT 61.085 57.895 18.67 0.00 39.75 2.83
72 73 1.372004 TCGTCGATCGCCGTTGTTT 60.372 52.632 18.67 0.00 39.75 2.83
73 74 0.940519 TCGTCGATCGCCGTTGTTTT 60.941 50.000 18.67 0.00 39.75 2.43
74 75 0.111001 CGTCGATCGCCGTTGTTTTT 60.111 50.000 10.86 0.00 39.75 1.94
123 124 0.523072 ATGTTTGCATGACTGTCGCC 59.477 50.000 0.00 0.00 33.37 5.54
124 125 1.210155 GTTTGCATGACTGTCGCCC 59.790 57.895 0.00 0.00 0.00 6.13
125 126 2.324330 TTTGCATGACTGTCGCCCG 61.324 57.895 0.00 0.00 0.00 6.13
128 129 2.434884 CATGACTGTCGCCCGCTT 60.435 61.111 2.98 0.00 0.00 4.68
129 130 2.034879 CATGACTGTCGCCCGCTTT 61.035 57.895 2.98 0.00 0.00 3.51
130 131 1.302511 ATGACTGTCGCCCGCTTTT 60.303 52.632 2.98 0.00 0.00 2.27
131 132 1.577328 ATGACTGTCGCCCGCTTTTG 61.577 55.000 2.98 0.00 0.00 2.44
132 133 2.203153 ACTGTCGCCCGCTTTTGT 60.203 55.556 0.00 0.00 0.00 2.83
133 134 0.947180 GACTGTCGCCCGCTTTTGTA 60.947 55.000 0.00 0.00 0.00 2.41
134 135 0.533308 ACTGTCGCCCGCTTTTGTAA 60.533 50.000 0.00 0.00 0.00 2.41
135 136 0.589223 CTGTCGCCCGCTTTTGTAAA 59.411 50.000 0.00 0.00 0.00 2.01
136 137 1.199097 CTGTCGCCCGCTTTTGTAAAT 59.801 47.619 0.00 0.00 0.00 1.40
137 138 1.609555 TGTCGCCCGCTTTTGTAAATT 59.390 42.857 0.00 0.00 0.00 1.82
138 139 2.812591 TGTCGCCCGCTTTTGTAAATTA 59.187 40.909 0.00 0.00 0.00 1.40
139 140 3.440872 TGTCGCCCGCTTTTGTAAATTAT 59.559 39.130 0.00 0.00 0.00 1.28
140 141 4.634883 TGTCGCCCGCTTTTGTAAATTATA 59.365 37.500 0.00 0.00 0.00 0.98
141 142 5.297278 TGTCGCCCGCTTTTGTAAATTATAT 59.703 36.000 0.00 0.00 0.00 0.86
142 143 5.623673 GTCGCCCGCTTTTGTAAATTATATG 59.376 40.000 0.00 0.00 0.00 1.78
143 144 5.297278 TCGCCCGCTTTTGTAAATTATATGT 59.703 36.000 0.00 0.00 0.00 2.29
144 145 6.482641 TCGCCCGCTTTTGTAAATTATATGTA 59.517 34.615 0.00 0.00 0.00 2.29
145 146 7.012138 TCGCCCGCTTTTGTAAATTATATGTAA 59.988 33.333 0.00 0.00 0.00 2.41
146 147 7.112426 CGCCCGCTTTTGTAAATTATATGTAAC 59.888 37.037 0.00 0.00 0.00 2.50
147 148 8.132995 GCCCGCTTTTGTAAATTATATGTAACT 58.867 33.333 0.00 0.00 0.00 2.24
168 169 4.824289 CTTTAAATGAAAGCTGCCCATGT 58.176 39.130 0.00 0.00 38.31 3.21
169 170 4.888326 TTAAATGAAAGCTGCCCATGTT 57.112 36.364 0.00 0.00 0.00 2.71
170 171 3.775261 AAATGAAAGCTGCCCATGTTT 57.225 38.095 0.00 0.00 0.00 2.83
171 172 4.888326 AAATGAAAGCTGCCCATGTTTA 57.112 36.364 0.00 0.00 0.00 2.01
172 173 3.874392 ATGAAAGCTGCCCATGTTTAC 57.126 42.857 0.00 0.00 0.00 2.01
173 174 2.591923 TGAAAGCTGCCCATGTTTACA 58.408 42.857 0.00 0.00 0.00 2.41
174 175 3.164268 TGAAAGCTGCCCATGTTTACAT 58.836 40.909 0.00 0.00 36.96 2.29
198 199 2.018542 TTTGTCCGATTTAGGCGAGG 57.981 50.000 0.00 0.00 0.00 4.63
199 200 0.461339 TTGTCCGATTTAGGCGAGGC 60.461 55.000 0.00 0.00 0.00 4.70
216 217 3.003173 CCGAGGAGGAGGCCACAA 61.003 66.667 5.01 0.00 45.00 3.33
217 218 2.266055 CGAGGAGGAGGCCACAAC 59.734 66.667 5.01 0.00 0.00 3.32
218 219 2.583441 CGAGGAGGAGGCCACAACA 61.583 63.158 5.01 0.00 0.00 3.33
219 220 1.903877 CGAGGAGGAGGCCACAACAT 61.904 60.000 5.01 0.00 0.00 2.71
220 221 0.393537 GAGGAGGAGGCCACAACATG 60.394 60.000 5.01 0.00 0.00 3.21
221 222 0.842030 AGGAGGAGGCCACAACATGA 60.842 55.000 5.01 0.00 0.00 3.07
222 223 0.678048 GGAGGAGGCCACAACATGAC 60.678 60.000 5.01 0.00 0.00 3.06
223 224 0.036732 GAGGAGGCCACAACATGACA 59.963 55.000 5.01 0.00 0.00 3.58
224 225 0.700564 AGGAGGCCACAACATGACAT 59.299 50.000 5.01 0.00 0.00 3.06
225 226 0.813184 GGAGGCCACAACATGACATG 59.187 55.000 14.02 14.02 0.00 3.21
226 227 1.614051 GGAGGCCACAACATGACATGA 60.614 52.381 22.19 0.00 0.00 3.07
227 228 1.470098 GAGGCCACAACATGACATGAC 59.530 52.381 22.19 0.00 0.00 3.06
228 229 0.168788 GGCCACAACATGACATGACG 59.831 55.000 22.19 13.66 0.00 4.35
229 230 0.168788 GCCACAACATGACATGACGG 59.831 55.000 22.19 15.32 0.00 4.79
230 231 0.168788 CCACAACATGACATGACGGC 59.831 55.000 22.19 0.00 0.00 5.68
231 232 0.179217 CACAACATGACATGACGGCG 60.179 55.000 22.19 4.80 0.00 6.46
232 233 1.226101 CAACATGACATGACGGCGC 60.226 57.895 22.19 0.00 0.00 6.53
233 234 1.375908 AACATGACATGACGGCGCT 60.376 52.632 22.19 0.00 0.00 5.92
234 235 1.361668 AACATGACATGACGGCGCTC 61.362 55.000 22.19 4.53 0.00 5.03
235 236 1.520120 CATGACATGACGGCGCTCT 60.520 57.895 10.03 0.00 0.00 4.09
236 237 1.520120 ATGACATGACGGCGCTCTG 60.520 57.895 6.90 4.00 0.00 3.35
237 238 2.887568 GACATGACGGCGCTCTGG 60.888 66.667 6.90 3.45 0.00 3.86
238 239 3.356639 GACATGACGGCGCTCTGGA 62.357 63.158 6.90 0.00 0.00 3.86
239 240 2.125552 CATGACGGCGCTCTGGAA 60.126 61.111 6.90 0.00 0.00 3.53
240 241 1.522355 CATGACGGCGCTCTGGAAT 60.522 57.895 6.90 0.00 0.00 3.01
241 242 0.249447 CATGACGGCGCTCTGGAATA 60.249 55.000 6.90 0.00 0.00 1.75
242 243 0.249489 ATGACGGCGCTCTGGAATAC 60.249 55.000 6.90 0.00 0.00 1.89
243 244 1.944676 GACGGCGCTCTGGAATACG 60.945 63.158 6.90 0.55 0.00 3.06
244 245 2.658593 CGGCGCTCTGGAATACGG 60.659 66.667 7.64 0.00 0.00 4.02
245 246 2.967615 GGCGCTCTGGAATACGGC 60.968 66.667 7.64 0.00 43.82 5.68
247 248 2.104331 CGCTCTGGAATACGGCGT 59.896 61.111 19.64 19.64 40.78 5.68
248 249 1.518572 CGCTCTGGAATACGGCGTT 60.519 57.895 21.24 0.00 40.78 4.84
249 250 1.480219 CGCTCTGGAATACGGCGTTC 61.480 60.000 21.24 11.03 40.78 3.95
250 251 1.480219 GCTCTGGAATACGGCGTTCG 61.480 60.000 21.24 0.00 45.88 3.95
259 260 3.458579 CGGCGTTCGTCTGTGTCG 61.459 66.667 0.00 0.00 0.00 4.35
260 261 3.103911 GGCGTTCGTCTGTGTCGG 61.104 66.667 0.00 0.00 0.00 4.79
261 262 3.103911 GCGTTCGTCTGTGTCGGG 61.104 66.667 0.00 0.00 0.00 5.14
262 263 3.103911 CGTTCGTCTGTGTCGGGC 61.104 66.667 0.00 0.00 0.00 6.13
263 264 2.737376 GTTCGTCTGTGTCGGGCC 60.737 66.667 0.00 0.00 0.00 5.80
264 265 4.351938 TTCGTCTGTGTCGGGCCG 62.352 66.667 22.51 22.51 0.00 6.13
284 285 4.194720 GCCGACGCTCATCGACCT 62.195 66.667 3.74 0.00 45.13 3.85
285 286 2.024871 CCGACGCTCATCGACCTC 59.975 66.667 3.74 0.00 45.13 3.85
286 287 2.761195 CCGACGCTCATCGACCTCA 61.761 63.158 3.74 0.00 45.13 3.86
287 288 1.583967 CGACGCTCATCGACCTCAC 60.584 63.158 0.00 0.00 45.13 3.51
288 289 1.583967 GACGCTCATCGACCTCACG 60.584 63.158 0.00 0.00 41.67 4.35
289 290 2.278206 CGCTCATCGACCTCACGG 60.278 66.667 0.00 0.00 41.67 4.94
290 291 2.761195 CGCTCATCGACCTCACGGA 61.761 63.158 0.00 0.00 41.67 4.69
291 292 1.226717 GCTCATCGACCTCACGGAC 60.227 63.158 0.00 0.00 0.00 4.79
292 293 1.433879 CTCATCGACCTCACGGACC 59.566 63.158 0.00 0.00 0.00 4.46
293 294 2.005960 CTCATCGACCTCACGGACCC 62.006 65.000 0.00 0.00 0.00 4.46
294 295 2.758737 ATCGACCTCACGGACCCC 60.759 66.667 0.00 0.00 0.00 4.95
305 306 2.993264 GGACCCCGAGGACGACAA 60.993 66.667 0.00 0.00 42.66 3.18
306 307 2.260743 GACCCCGAGGACGACAAC 59.739 66.667 0.00 0.00 42.66 3.32
307 308 3.621892 GACCCCGAGGACGACAACG 62.622 68.421 0.00 0.00 42.66 4.10
308 309 3.367743 CCCCGAGGACGACAACGA 61.368 66.667 0.00 0.00 42.66 3.85
309 310 2.126580 CCCGAGGACGACAACGAC 60.127 66.667 0.00 0.00 42.66 4.34
310 311 2.501222 CCGAGGACGACAACGACG 60.501 66.667 0.00 0.00 42.66 5.12
311 312 2.552768 CGAGGACGACAACGACGA 59.447 61.111 0.00 0.00 42.66 4.20
312 313 1.791283 CGAGGACGACAACGACGAC 60.791 63.158 0.00 0.00 42.66 4.34
313 314 1.791283 GAGGACGACAACGACGACG 60.791 63.158 5.58 5.58 42.66 5.12
314 315 3.456039 GGACGACAACGACGACGC 61.456 66.667 7.30 0.00 43.96 5.19
315 316 3.456039 GACGACAACGACGACGCC 61.456 66.667 7.30 0.00 43.96 5.68
316 317 3.868951 GACGACAACGACGACGCCT 62.869 63.158 7.30 0.00 43.96 5.52
317 318 2.174107 CGACAACGACGACGCCTA 59.826 61.111 7.30 0.00 43.96 3.93
318 319 1.862147 CGACAACGACGACGCCTAG 60.862 63.158 7.30 0.00 43.96 3.02
319 320 1.513586 GACAACGACGACGCCTAGG 60.514 63.158 3.67 3.67 43.96 3.02
320 321 2.202570 CAACGACGACGCCTAGGG 60.203 66.667 11.72 3.13 43.96 3.53
321 322 4.125695 AACGACGACGCCTAGGGC 62.126 66.667 11.72 1.76 46.75 5.19
341 342 3.560278 CGCGCCGCCTCGTAATTT 61.560 61.111 2.28 0.00 0.00 1.82
342 343 2.232296 CGCGCCGCCTCGTAATTTA 61.232 57.895 2.28 0.00 0.00 1.40
343 344 1.563173 GCGCCGCCTCGTAATTTAG 59.437 57.895 0.00 0.00 0.00 1.85
344 345 1.828331 GCGCCGCCTCGTAATTTAGG 61.828 60.000 0.00 0.00 35.86 2.69
354 355 6.496338 CCTCGTAATTTAGGCTGTTTTCTT 57.504 37.500 0.00 0.00 0.00 2.52
355 356 6.909909 CCTCGTAATTTAGGCTGTTTTCTTT 58.090 36.000 0.00 0.00 0.00 2.52
356 357 7.368059 CCTCGTAATTTAGGCTGTTTTCTTTT 58.632 34.615 0.00 0.00 0.00 2.27
357 358 7.865889 CCTCGTAATTTAGGCTGTTTTCTTTTT 59.134 33.333 0.00 0.00 0.00 1.94
379 380 5.940603 TTTTAAATGCAAATATGGACGCG 57.059 34.783 3.53 3.53 0.00 6.01
380 381 4.624336 TTAAATGCAAATATGGACGCGT 57.376 36.364 13.85 13.85 0.00 6.01
381 382 2.473530 AATGCAAATATGGACGCGTG 57.526 45.000 20.70 0.00 0.00 5.34
382 383 0.662619 ATGCAAATATGGACGCGTGG 59.337 50.000 20.70 0.00 0.00 4.94
383 384 0.391793 TGCAAATATGGACGCGTGGA 60.392 50.000 20.70 1.85 0.00 4.02
384 385 0.027586 GCAAATATGGACGCGTGGAC 59.972 55.000 20.70 7.46 0.00 4.02
385 386 1.651987 CAAATATGGACGCGTGGACT 58.348 50.000 20.70 0.13 0.00 3.85
386 387 1.593006 CAAATATGGACGCGTGGACTC 59.407 52.381 20.70 0.00 0.00 3.36
387 388 1.112113 AATATGGACGCGTGGACTCT 58.888 50.000 20.70 1.44 0.00 3.24
388 389 0.669077 ATATGGACGCGTGGACTCTC 59.331 55.000 20.70 0.00 0.00 3.20
389 390 1.712018 TATGGACGCGTGGACTCTCG 61.712 60.000 20.70 0.00 0.00 4.04
396 397 4.070552 GTGGACTCTCGCCGGCTT 62.071 66.667 26.68 2.59 0.00 4.35
397 398 3.311110 TGGACTCTCGCCGGCTTT 61.311 61.111 26.68 3.00 0.00 3.51
398 399 2.509561 GGACTCTCGCCGGCTTTC 60.510 66.667 26.68 12.56 0.00 2.62
399 400 2.881352 GACTCTCGCCGGCTTTCG 60.881 66.667 26.68 12.83 38.88 3.46
400 401 3.628280 GACTCTCGCCGGCTTTCGT 62.628 63.158 26.68 16.16 37.11 3.85
401 402 3.181967 CTCTCGCCGGCTTTCGTG 61.182 66.667 26.68 7.77 37.11 4.35
402 403 4.735132 TCTCGCCGGCTTTCGTGG 62.735 66.667 26.68 6.92 37.11 4.94
409 410 2.668550 GGCTTTCGTGGCCGACTT 60.669 61.111 0.00 0.00 44.13 3.01
410 411 2.258726 GGCTTTCGTGGCCGACTTT 61.259 57.895 0.00 0.00 44.13 2.66
411 412 0.952010 GGCTTTCGTGGCCGACTTTA 60.952 55.000 0.00 0.00 44.13 1.85
412 413 0.869730 GCTTTCGTGGCCGACTTTAA 59.130 50.000 0.00 0.00 44.13 1.52
413 414 1.467342 GCTTTCGTGGCCGACTTTAAT 59.533 47.619 0.00 0.00 44.13 1.40
414 415 2.727916 GCTTTCGTGGCCGACTTTAATG 60.728 50.000 0.00 0.00 44.13 1.90
415 416 2.172851 TTCGTGGCCGACTTTAATGT 57.827 45.000 0.00 0.00 44.13 2.71
416 417 2.172851 TCGTGGCCGACTTTAATGTT 57.827 45.000 0.00 0.00 38.40 2.71
417 418 2.496111 TCGTGGCCGACTTTAATGTTT 58.504 42.857 0.00 0.00 38.40 2.83
418 419 3.661944 TCGTGGCCGACTTTAATGTTTA 58.338 40.909 0.00 0.00 38.40 2.01
419 420 4.063689 TCGTGGCCGACTTTAATGTTTAA 58.936 39.130 0.00 0.00 38.40 1.52
420 421 4.696402 TCGTGGCCGACTTTAATGTTTAAT 59.304 37.500 0.00 0.00 38.40 1.40
421 422 5.181622 TCGTGGCCGACTTTAATGTTTAATT 59.818 36.000 0.00 0.00 38.40 1.40
422 423 6.370994 TCGTGGCCGACTTTAATGTTTAATTA 59.629 34.615 0.00 0.00 38.40 1.40
423 424 7.022384 CGTGGCCGACTTTAATGTTTAATTAA 58.978 34.615 0.00 0.00 35.63 1.40
424 425 7.698970 CGTGGCCGACTTTAATGTTTAATTAAT 59.301 33.333 0.00 0.00 35.63 1.40
425 426 8.803799 GTGGCCGACTTTAATGTTTAATTAATG 58.196 33.333 0.00 0.00 0.00 1.90
426 427 8.524487 TGGCCGACTTTAATGTTTAATTAATGT 58.476 29.630 0.00 8.33 35.75 2.71
427 428 9.361315 GGCCGACTTTAATGTTTAATTAATGTT 57.639 29.630 0.00 0.00 34.28 2.71
479 480 3.669354 TTTTTGGCGGCGTCAAAAT 57.331 42.105 41.20 0.00 44.66 1.82
480 481 1.941325 TTTTTGGCGGCGTCAAAATT 58.059 40.000 41.20 0.00 44.66 1.82
481 482 1.212616 TTTTGGCGGCGTCAAAATTG 58.787 45.000 38.86 0.00 41.28 2.32
482 483 0.598680 TTTGGCGGCGTCAAAATTGG 60.599 50.000 34.21 0.00 34.07 3.16
483 484 1.739338 TTGGCGGCGTCAAAATTGGT 61.739 50.000 26.13 0.00 0.00 3.67
484 485 1.443702 GGCGGCGTCAAAATTGGTC 60.444 57.895 6.63 0.00 0.00 4.02
485 486 1.579429 GCGGCGTCAAAATTGGTCT 59.421 52.632 9.37 0.00 0.00 3.85
486 487 0.454452 GCGGCGTCAAAATTGGTCTC 60.454 55.000 9.37 0.00 0.00 3.36
487 488 0.871722 CGGCGTCAAAATTGGTCTCA 59.128 50.000 0.00 0.00 0.00 3.27
488 489 1.135972 CGGCGTCAAAATTGGTCTCAG 60.136 52.381 0.00 0.00 0.00 3.35
489 490 1.200020 GGCGTCAAAATTGGTCTCAGG 59.800 52.381 0.00 0.00 0.00 3.86
490 491 1.401539 GCGTCAAAATTGGTCTCAGGC 60.402 52.381 0.00 0.00 0.00 4.85
491 492 1.200020 CGTCAAAATTGGTCTCAGGCC 59.800 52.381 0.00 0.00 0.00 5.19
492 493 2.238521 GTCAAAATTGGTCTCAGGCCA 58.761 47.619 5.01 0.00 0.00 5.36
493 494 2.029918 GTCAAAATTGGTCTCAGGCCAC 60.030 50.000 0.00 0.00 35.46 5.01
494 495 2.158475 TCAAAATTGGTCTCAGGCCACT 60.158 45.455 0.00 0.00 35.46 4.00
495 496 1.915141 AAATTGGTCTCAGGCCACTG 58.085 50.000 0.00 0.00 46.30 3.66
496 497 0.773644 AATTGGTCTCAGGCCACTGT 59.226 50.000 0.00 0.00 45.14 3.55
497 498 0.773644 ATTGGTCTCAGGCCACTGTT 59.226 50.000 0.00 0.00 45.14 3.16
498 499 0.179020 TTGGTCTCAGGCCACTGTTG 60.179 55.000 0.00 0.00 45.14 3.33
500 501 1.302832 GTCTCAGGCCACTGTTGGG 60.303 63.158 5.01 0.00 44.15 4.12
508 509 3.049674 CACTGTTGGGCGCACGAT 61.050 61.111 10.83 0.00 0.00 3.73
509 510 2.742372 ACTGTTGGGCGCACGATC 60.742 61.111 10.83 0.58 0.00 3.69
510 511 3.499737 CTGTTGGGCGCACGATCC 61.500 66.667 10.83 0.01 0.00 3.36
511 512 4.321966 TGTTGGGCGCACGATCCA 62.322 61.111 10.83 3.44 0.00 3.41
512 513 3.053291 GTTGGGCGCACGATCCAA 61.053 61.111 10.83 10.65 38.13 3.53
513 514 2.281831 TTGGGCGCACGATCCAAA 60.282 55.556 10.83 0.00 37.58 3.28
514 515 1.677300 TTGGGCGCACGATCCAAAT 60.677 52.632 10.83 0.00 37.58 2.32
515 516 1.932011 TTGGGCGCACGATCCAAATG 61.932 55.000 10.83 0.00 37.58 2.32
516 517 2.278142 GGCGCACGATCCAAATGC 60.278 61.111 10.83 0.00 35.96 3.56
519 520 3.496711 GCACGATCCAAATGCGGA 58.503 55.556 0.00 0.00 40.07 5.54
520 521 1.800032 GCACGATCCAAATGCGGAA 59.200 52.632 0.00 0.00 38.95 4.30
521 522 0.248215 GCACGATCCAAATGCGGAAG 60.248 55.000 0.00 0.00 38.95 3.46
540 541 3.771160 GGGCATCCGTGTCCGTCT 61.771 66.667 0.00 0.00 40.95 4.18
541 542 2.509336 GGCATCCGTGTCCGTCTG 60.509 66.667 0.00 0.00 0.00 3.51
542 543 2.509336 GCATCCGTGTCCGTCTGG 60.509 66.667 0.00 0.00 0.00 3.86
543 544 2.970639 CATCCGTGTCCGTCTGGT 59.029 61.111 0.00 0.00 36.30 4.00
544 545 1.153823 CATCCGTGTCCGTCTGGTC 60.154 63.158 0.00 0.00 36.30 4.02
545 546 2.697761 ATCCGTGTCCGTCTGGTCG 61.698 63.158 0.00 0.00 36.30 4.79
546 547 3.359523 CCGTGTCCGTCTGGTCGA 61.360 66.667 0.00 0.00 36.30 4.20
547 548 2.126965 CGTGTCCGTCTGGTCGAC 60.127 66.667 7.13 7.13 39.33 4.20
548 549 2.257676 GTGTCCGTCTGGTCGACC 59.742 66.667 28.17 28.17 39.56 4.79
549 550 2.987547 TGTCCGTCTGGTCGACCC 60.988 66.667 31.19 15.31 39.56 4.46
550 551 2.987547 GTCCGTCTGGTCGACCCA 60.988 66.667 31.19 17.90 42.51 4.51
551 552 2.203523 TCCGTCTGGTCGACCCAA 60.204 61.111 31.19 16.67 44.65 4.12
552 553 1.833492 TCCGTCTGGTCGACCCAAA 60.833 57.895 31.19 14.02 44.65 3.28
553 554 1.666872 CCGTCTGGTCGACCCAAAC 60.667 63.158 31.19 22.96 44.65 2.93
554 555 1.068417 CGTCTGGTCGACCCAAACA 59.932 57.895 31.19 11.80 44.65 2.83
555 556 0.944311 CGTCTGGTCGACCCAAACAG 60.944 60.000 31.19 20.84 44.65 3.16
556 557 0.391597 GTCTGGTCGACCCAAACAGA 59.608 55.000 31.19 22.76 44.65 3.41
557 558 0.391597 TCTGGTCGACCCAAACAGAC 59.608 55.000 31.19 3.87 44.65 3.51
558 559 0.105964 CTGGTCGACCCAAACAGACA 59.894 55.000 31.19 8.71 44.65 3.41
559 560 0.542333 TGGTCGACCCAAACAGACAA 59.458 50.000 31.19 5.95 41.50 3.18
560 561 1.065345 TGGTCGACCCAAACAGACAAA 60.065 47.619 31.19 5.38 41.50 2.83
561 562 2.018515 GGTCGACCCAAACAGACAAAA 58.981 47.619 24.75 0.00 35.49 2.44
562 563 2.424246 GGTCGACCCAAACAGACAAAAA 59.576 45.455 24.75 0.00 35.49 1.94
563 564 3.488553 GGTCGACCCAAACAGACAAAAAG 60.489 47.826 24.75 0.00 35.49 2.27
564 565 2.098443 TCGACCCAAACAGACAAAAAGC 59.902 45.455 0.00 0.00 0.00 3.51
565 566 2.159310 CGACCCAAACAGACAAAAAGCA 60.159 45.455 0.00 0.00 0.00 3.91
566 567 3.674682 CGACCCAAACAGACAAAAAGCAA 60.675 43.478 0.00 0.00 0.00 3.91
567 568 4.249661 GACCCAAACAGACAAAAAGCAAA 58.750 39.130 0.00 0.00 0.00 3.68
568 569 4.000325 ACCCAAACAGACAAAAAGCAAAC 59.000 39.130 0.00 0.00 0.00 2.93
569 570 3.061965 CCCAAACAGACAAAAAGCAAACG 59.938 43.478 0.00 0.00 0.00 3.60
570 571 3.923461 CCAAACAGACAAAAAGCAAACGA 59.077 39.130 0.00 0.00 0.00 3.85
571 572 4.387256 CCAAACAGACAAAAAGCAAACGAA 59.613 37.500 0.00 0.00 0.00 3.85
572 573 5.107298 CCAAACAGACAAAAAGCAAACGAAA 60.107 36.000 0.00 0.00 0.00 3.46
573 574 6.402011 CCAAACAGACAAAAAGCAAACGAAAT 60.402 34.615 0.00 0.00 0.00 2.17
574 575 5.949233 ACAGACAAAAAGCAAACGAAATC 57.051 34.783 0.00 0.00 0.00 2.17
575 576 5.406649 ACAGACAAAAAGCAAACGAAATCA 58.593 33.333 0.00 0.00 0.00 2.57
576 577 6.042143 ACAGACAAAAAGCAAACGAAATCAT 58.958 32.000 0.00 0.00 0.00 2.45
577 578 6.198966 ACAGACAAAAAGCAAACGAAATCATC 59.801 34.615 0.00 0.00 0.00 2.92
578 579 6.198778 CAGACAAAAAGCAAACGAAATCATCA 59.801 34.615 0.00 0.00 0.00 3.07
579 580 6.925165 AGACAAAAAGCAAACGAAATCATCAT 59.075 30.769 0.00 0.00 0.00 2.45
580 581 7.109006 ACAAAAAGCAAACGAAATCATCATC 57.891 32.000 0.00 0.00 0.00 2.92
581 582 6.146021 ACAAAAAGCAAACGAAATCATCATCC 59.854 34.615 0.00 0.00 0.00 3.51
582 583 3.680642 AGCAAACGAAATCATCATCCG 57.319 42.857 0.00 0.00 0.00 4.18
583 584 3.009723 AGCAAACGAAATCATCATCCGT 58.990 40.909 0.00 0.00 34.74 4.69
584 585 3.440173 AGCAAACGAAATCATCATCCGTT 59.560 39.130 0.00 0.00 43.98 4.44
588 589 6.978343 AAACGAAATCATCATCCGTTTAGA 57.022 33.333 9.05 0.00 46.94 2.10
589 590 7.553881 AAACGAAATCATCATCCGTTTAGAT 57.446 32.000 9.05 0.00 46.94 1.98
590 591 6.771188 ACGAAATCATCATCCGTTTAGATC 57.229 37.500 0.00 0.00 0.00 2.75
591 592 5.402568 ACGAAATCATCATCCGTTTAGATCG 59.597 40.000 0.00 0.00 0.00 3.69
593 594 3.026630 TCATCATCCGTTTAGATCGGC 57.973 47.619 0.00 0.00 46.49 5.54
594 595 2.069273 CATCATCCGTTTAGATCGGCC 58.931 52.381 0.00 0.00 46.49 6.13
595 596 0.391597 TCATCCGTTTAGATCGGCCC 59.608 55.000 0.00 0.00 46.49 5.80
596 597 0.944311 CATCCGTTTAGATCGGCCCG 60.944 60.000 0.00 0.00 46.49 6.13
597 598 1.397390 ATCCGTTTAGATCGGCCCGT 61.397 55.000 1.63 0.00 46.49 5.28
598 599 1.153509 CCGTTTAGATCGGCCCGTT 60.154 57.895 1.63 0.00 41.48 4.44
599 600 1.426041 CCGTTTAGATCGGCCCGTTG 61.426 60.000 1.63 0.00 41.48 4.10
600 601 1.426041 CGTTTAGATCGGCCCGTTGG 61.426 60.000 1.63 0.00 0.00 3.77
601 602 0.108041 GTTTAGATCGGCCCGTTGGA 60.108 55.000 1.63 0.00 0.00 3.53
602 603 0.177141 TTTAGATCGGCCCGTTGGAG 59.823 55.000 1.63 0.00 0.00 3.86
603 604 0.974010 TTAGATCGGCCCGTTGGAGT 60.974 55.000 1.63 0.00 0.00 3.85
604 605 0.974010 TAGATCGGCCCGTTGGAGTT 60.974 55.000 1.63 0.00 0.00 3.01
605 606 2.046314 ATCGGCCCGTTGGAGTTG 60.046 61.111 1.63 0.00 0.00 3.16
608 609 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
609 610 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
610 611 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
611 612 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
612 613 1.726853 CCCGTTGGAGTTGCTCTTAG 58.273 55.000 0.00 0.00 0.00 2.18
613 614 1.002087 CCCGTTGGAGTTGCTCTTAGT 59.998 52.381 0.00 0.00 0.00 2.24
614 615 2.550208 CCCGTTGGAGTTGCTCTTAGTT 60.550 50.000 0.00 0.00 0.00 2.24
615 616 3.139077 CCGTTGGAGTTGCTCTTAGTTT 58.861 45.455 0.00 0.00 0.00 2.66
616 617 3.058914 CCGTTGGAGTTGCTCTTAGTTTG 60.059 47.826 0.00 0.00 0.00 2.93
617 618 3.058914 CGTTGGAGTTGCTCTTAGTTTGG 60.059 47.826 0.00 0.00 0.00 3.28
618 619 4.134563 GTTGGAGTTGCTCTTAGTTTGGA 58.865 43.478 0.00 0.00 0.00 3.53
619 620 3.740115 TGGAGTTGCTCTTAGTTTGGAC 58.260 45.455 0.00 0.00 0.00 4.02
620 621 2.737252 GGAGTTGCTCTTAGTTTGGACG 59.263 50.000 0.00 0.00 0.00 4.79
621 622 3.554337 GGAGTTGCTCTTAGTTTGGACGA 60.554 47.826 0.00 0.00 0.00 4.20
622 623 4.246458 GAGTTGCTCTTAGTTTGGACGAT 58.754 43.478 0.00 0.00 0.00 3.73
623 624 5.401531 AGTTGCTCTTAGTTTGGACGATA 57.598 39.130 0.00 0.00 0.00 2.92
624 625 5.411781 AGTTGCTCTTAGTTTGGACGATAG 58.588 41.667 0.00 0.00 46.19 2.08
642 643 6.780706 CGATAGTTGAAATGTATGGTACCC 57.219 41.667 10.07 0.00 0.00 3.69
643 644 5.699458 CGATAGTTGAAATGTATGGTACCCC 59.301 44.000 10.07 0.00 0.00 4.95
644 645 6.463897 CGATAGTTGAAATGTATGGTACCCCT 60.464 42.308 10.07 0.00 0.00 4.79
645 646 5.530176 AGTTGAAATGTATGGTACCCCTT 57.470 39.130 10.07 0.00 0.00 3.95
646 647 5.899278 AGTTGAAATGTATGGTACCCCTTT 58.101 37.500 10.07 0.00 0.00 3.11
647 648 5.714806 AGTTGAAATGTATGGTACCCCTTTG 59.285 40.000 10.07 0.00 0.00 2.77
648 649 5.263872 TGAAATGTATGGTACCCCTTTGT 57.736 39.130 10.07 0.00 0.00 2.83
649 650 5.646215 TGAAATGTATGGTACCCCTTTGTT 58.354 37.500 10.07 0.00 0.00 2.83
650 651 5.478679 TGAAATGTATGGTACCCCTTTGTTG 59.521 40.000 10.07 0.00 0.00 3.33
651 652 4.938575 ATGTATGGTACCCCTTTGTTGA 57.061 40.909 10.07 0.00 0.00 3.18
652 653 4.295141 TGTATGGTACCCCTTTGTTGAG 57.705 45.455 10.07 0.00 0.00 3.02
653 654 3.911260 TGTATGGTACCCCTTTGTTGAGA 59.089 43.478 10.07 0.00 0.00 3.27
654 655 4.538490 TGTATGGTACCCCTTTGTTGAGAT 59.462 41.667 10.07 0.00 0.00 2.75
655 656 3.433306 TGGTACCCCTTTGTTGAGATG 57.567 47.619 10.07 0.00 0.00 2.90
656 657 2.041081 TGGTACCCCTTTGTTGAGATGG 59.959 50.000 10.07 0.00 0.00 3.51
657 658 2.307686 GGTACCCCTTTGTTGAGATGGA 59.692 50.000 0.00 0.00 0.00 3.41
658 659 2.586648 ACCCCTTTGTTGAGATGGAC 57.413 50.000 0.00 0.00 0.00 4.02
659 660 1.271379 ACCCCTTTGTTGAGATGGACG 60.271 52.381 0.00 0.00 0.00 4.79
660 661 1.453155 CCCTTTGTTGAGATGGACGG 58.547 55.000 0.00 0.00 0.00 4.79
661 662 1.003118 CCCTTTGTTGAGATGGACGGA 59.997 52.381 0.00 0.00 0.00 4.69
662 663 2.076863 CCTTTGTTGAGATGGACGGAC 58.923 52.381 0.00 0.00 0.00 4.79
663 664 1.726791 CTTTGTTGAGATGGACGGACG 59.273 52.381 0.00 0.00 0.00 4.79
664 665 0.669318 TTGTTGAGATGGACGGACGC 60.669 55.000 0.00 0.00 0.00 5.19
665 666 1.810030 GTTGAGATGGACGGACGCC 60.810 63.158 0.00 0.00 0.00 5.68
675 676 3.884900 CGGACGCCGGAGAAAATT 58.115 55.556 13.83 0.00 44.15 1.82
676 677 2.168054 CGGACGCCGGAGAAAATTT 58.832 52.632 13.83 0.00 44.15 1.82
677 678 0.179200 CGGACGCCGGAGAAAATTTG 60.179 55.000 13.83 0.00 44.15 2.32
678 679 0.879090 GGACGCCGGAGAAAATTTGT 59.121 50.000 13.83 0.00 0.00 2.83
679 680 1.401018 GGACGCCGGAGAAAATTTGTG 60.401 52.381 13.83 0.00 0.00 3.33
680 681 1.533731 GACGCCGGAGAAAATTTGTGA 59.466 47.619 13.83 0.00 0.00 3.58
681 682 2.159382 ACGCCGGAGAAAATTTGTGAT 58.841 42.857 13.83 0.00 0.00 3.06
682 683 2.161609 ACGCCGGAGAAAATTTGTGATC 59.838 45.455 13.83 0.00 0.00 2.92
683 684 2.785679 GCCGGAGAAAATTTGTGATCG 58.214 47.619 5.05 0.00 0.00 3.69
684 685 2.161609 GCCGGAGAAAATTTGTGATCGT 59.838 45.455 5.05 0.00 0.00 3.73
685 686 3.372822 GCCGGAGAAAATTTGTGATCGTA 59.627 43.478 5.05 0.00 0.00 3.43
686 687 4.494199 GCCGGAGAAAATTTGTGATCGTAG 60.494 45.833 5.05 0.00 0.00 3.51
687 688 4.868171 CCGGAGAAAATTTGTGATCGTAGA 59.132 41.667 0.00 0.00 45.75 2.59
688 689 5.523916 CCGGAGAAAATTTGTGATCGTAGAT 59.476 40.000 0.00 0.00 45.12 1.98
689 690 6.414079 CGGAGAAAATTTGTGATCGTAGATG 58.586 40.000 0.00 0.00 45.12 2.90
690 691 6.195165 GGAGAAAATTTGTGATCGTAGATGC 58.805 40.000 0.00 0.00 45.12 3.91
691 692 6.124088 AGAAAATTTGTGATCGTAGATGCC 57.876 37.500 0.00 0.00 45.12 4.40
692 693 4.900635 AAATTTGTGATCGTAGATGCCC 57.099 40.909 0.00 0.00 45.12 5.36
693 694 3.845781 ATTTGTGATCGTAGATGCCCT 57.154 42.857 0.00 0.00 45.12 5.19
694 695 3.627395 TTTGTGATCGTAGATGCCCTT 57.373 42.857 0.00 0.00 45.12 3.95
695 696 2.890808 TGTGATCGTAGATGCCCTTC 57.109 50.000 0.00 0.00 45.12 3.46
696 697 1.412710 TGTGATCGTAGATGCCCTTCC 59.587 52.381 0.00 0.00 45.12 3.46
697 698 1.412710 GTGATCGTAGATGCCCTTCCA 59.587 52.381 0.00 0.00 45.12 3.53
698 699 1.412710 TGATCGTAGATGCCCTTCCAC 59.587 52.381 0.00 0.00 45.12 4.02
699 700 0.759346 ATCGTAGATGCCCTTCCACC 59.241 55.000 0.00 0.00 45.12 4.61
700 701 0.616395 TCGTAGATGCCCTTCCACCA 60.616 55.000 0.00 0.00 0.00 4.17
701 702 0.462047 CGTAGATGCCCTTCCACCAC 60.462 60.000 0.00 0.00 0.00 4.16
702 703 0.462047 GTAGATGCCCTTCCACCACG 60.462 60.000 0.00 0.00 0.00 4.94
728 729 3.705043 ACGAATCACTGTACGTATCCC 57.295 47.619 0.00 0.00 37.22 3.85
738 739 2.101750 TGTACGTATCCCGCACATCATT 59.898 45.455 0.00 0.00 37.90 2.57
946 956 1.636769 GCCTCGGATCCCCTTTCCTT 61.637 60.000 6.06 0.00 0.00 3.36
947 957 0.919710 CCTCGGATCCCCTTTCCTTT 59.080 55.000 6.06 0.00 0.00 3.11
948 958 1.134068 CCTCGGATCCCCTTTCCTTTC 60.134 57.143 6.06 0.00 0.00 2.62
949 959 0.916809 TCGGATCCCCTTTCCTTTCC 59.083 55.000 6.06 0.00 0.00 3.13
950 960 0.919710 CGGATCCCCTTTCCTTTCCT 59.080 55.000 6.06 0.00 0.00 3.36
958 968 1.850755 TTTCCTTTCCTCCCGCCCT 60.851 57.895 0.00 0.00 0.00 5.19
2154 2167 5.012046 AGCATTGGCATTTGATGATGATGAT 59.988 36.000 1.16 0.00 44.61 2.45
2169 2182 2.289257 TGATGATAAGGAGGCAGATGCG 60.289 50.000 0.00 0.00 43.26 4.73
2220 2233 2.593436 AAGAAACCACCACGGCCG 60.593 61.111 26.86 26.86 39.03 6.13
2274 2287 4.227197 GGGATGGTGAGAGGAGAAATCTA 58.773 47.826 0.00 0.00 0.00 1.98
2424 2437 4.177026 CCGTAAGAGTGGTTGAATCAGAG 58.823 47.826 0.00 0.00 43.02 3.35
2451 2464 3.560896 TCGGTAAAGTTGAAAGGGTTTCG 59.439 43.478 0.00 0.00 42.55 3.46
2452 2465 3.313249 CGGTAAAGTTGAAAGGGTTTCGT 59.687 43.478 0.00 0.00 42.55 3.85
2481 2494 3.449737 ATGCAAGCATCAAGCATAAACCT 59.550 39.130 0.86 0.00 46.27 3.50
2543 2556 0.809241 GCCGATGGAGTGCAAGAGAG 60.809 60.000 0.00 0.00 0.00 3.20
2606 2703 7.679881 AGAAAATCCAGGGGAAATTGATAAAGT 59.320 33.333 0.00 0.00 34.34 2.66
2659 2789 4.214119 TCCTTGACAAAGCTGAGAAAATCG 59.786 41.667 0.00 0.00 31.51 3.34
2802 2932 4.577875 AGATCCAAGACAAAGCAGAGAAG 58.422 43.478 0.00 0.00 0.00 2.85
2821 2951 5.776744 AGAAGATCCAATGCAAGTTGAAAC 58.223 37.500 7.16 0.00 0.00 2.78
2833 2963 9.986833 AATGCAAGTTGAAACAAAGTTAAAATC 57.013 25.926 7.16 0.00 0.00 2.17
2901 3031 3.555139 CGATCTCAAGGACAAAGCTCATC 59.445 47.826 0.00 0.00 0.00 2.92
2917 3047 3.118629 GCTCATCAAGTCATGAGGTACCA 60.119 47.826 15.94 0.00 46.95 3.25
2918 3048 4.437239 CTCATCAAGTCATGAGGTACCAC 58.563 47.826 15.94 8.81 44.29 4.16
2919 3049 3.197766 TCATCAAGTCATGAGGTACCACC 59.802 47.826 15.94 6.00 42.53 4.61
2962 3092 4.225942 TGCTGGGATGGTAATATCTGATCC 59.774 45.833 0.00 0.00 33.14 3.36
3001 3131 3.076621 TGGCTGTGACTTGTGATGATTC 58.923 45.455 0.00 0.00 0.00 2.52
3106 3236 3.368116 GGTCACATGGTACTGGTACTGTC 60.368 52.174 10.19 0.58 41.74 3.51
3107 3237 3.257375 GTCACATGGTACTGGTACTGTCA 59.743 47.826 10.19 1.87 41.74 3.58
3119 3249 4.127171 TGGTACTGTCAAAACTCTGAAGC 58.873 43.478 0.00 0.00 0.00 3.86
3222 3352 3.656559 AGCAACTGATGTTCATTTTGCC 58.343 40.909 15.16 4.30 42.03 4.52
3276 3406 0.608856 ACATCCGTTGAAGGCATGCA 60.609 50.000 21.36 0.00 0.00 3.96
3277 3407 0.742505 CATCCGTTGAAGGCATGCAT 59.257 50.000 21.36 10.32 0.00 3.96
3358 3488 3.723260 TGTGTCTGCGTACAAGAATCAA 58.277 40.909 0.00 0.00 0.00 2.57
3369 3499 1.962807 CAAGAATCAACAAGTGCCCCA 59.037 47.619 0.00 0.00 0.00 4.96
3370 3500 2.564062 CAAGAATCAACAAGTGCCCCAT 59.436 45.455 0.00 0.00 0.00 4.00
3371 3501 2.893424 AGAATCAACAAGTGCCCCATT 58.107 42.857 0.00 0.00 0.00 3.16
3372 3502 2.564062 AGAATCAACAAGTGCCCCATTG 59.436 45.455 0.00 0.00 0.00 2.82
3399 3529 3.688694 TTGTATGTAAACAGGACGGCT 57.311 42.857 0.00 0.00 0.00 5.52
3459 3589 7.870509 TTGACATTTCCATCTTATCTTGAGG 57.129 36.000 0.00 0.00 0.00 3.86
3460 3590 5.824624 TGACATTTCCATCTTATCTTGAGGC 59.175 40.000 0.00 0.00 0.00 4.70
3461 3591 6.011122 ACATTTCCATCTTATCTTGAGGCT 57.989 37.500 0.00 0.00 0.00 4.58
3462 3592 6.430007 ACATTTCCATCTTATCTTGAGGCTT 58.570 36.000 0.00 0.00 0.00 4.35
3464 3594 6.764308 TTTCCATCTTATCTTGAGGCTTTG 57.236 37.500 0.00 0.00 0.00 2.77
3465 3595 5.698741 TCCATCTTATCTTGAGGCTTTGA 57.301 39.130 0.00 0.00 0.00 2.69
3466 3596 6.257994 TCCATCTTATCTTGAGGCTTTGAT 57.742 37.500 0.00 0.00 0.00 2.57
3468 3598 6.544931 TCCATCTTATCTTGAGGCTTTGATTG 59.455 38.462 0.00 0.00 0.00 2.67
3477 4506 0.388520 GGCTTTGATTGGGAACGCAC 60.389 55.000 0.00 0.00 0.00 5.34
3501 4530 2.644676 GGATGGTGGCTAGTCTTTTCC 58.355 52.381 0.00 0.00 0.00 3.13
3546 4575 1.226888 GGGCGCGTCGTTCTTATCT 60.227 57.895 8.43 0.00 0.00 1.98
3657 4686 1.615392 GAATGTTTTGCCCAGCTGTCT 59.385 47.619 13.81 0.00 0.00 3.41
3659 4688 1.006922 GTTTTGCCCAGCTGTCTGC 60.007 57.895 13.81 12.67 39.00 4.26
3676 4705 0.028902 TGCGTCGTCATATGGACTCG 59.971 55.000 2.13 5.11 44.68 4.18
3694 4723 4.913376 ACTCGATGCATTCTTTAATGTGC 58.087 39.130 0.00 0.00 43.75 4.57
3708 4739 3.812611 AATGTGCATATGGGGCATCTA 57.187 42.857 4.56 0.00 44.11 1.98
3744 4778 4.473444 TCTCAGAAATGCCCAGAAGTTTT 58.527 39.130 0.00 0.00 0.00 2.43
3773 4807 1.544724 TGGTTTGTTCATAGCAGGGC 58.455 50.000 0.00 0.00 0.00 5.19
3794 4828 4.717233 CAGTACATGCTCTCTTCACTCT 57.283 45.455 0.00 0.00 0.00 3.24
3795 4829 5.070770 CAGTACATGCTCTCTTCACTCTT 57.929 43.478 0.00 0.00 0.00 2.85
3796 4830 4.863689 CAGTACATGCTCTCTTCACTCTTG 59.136 45.833 0.00 0.00 0.00 3.02
3797 4831 3.331478 ACATGCTCTCTTCACTCTTGG 57.669 47.619 0.00 0.00 0.00 3.61
3798 4832 2.636893 ACATGCTCTCTTCACTCTTGGT 59.363 45.455 0.00 0.00 0.00 3.67
3799 4833 3.834813 ACATGCTCTCTTCACTCTTGGTA 59.165 43.478 0.00 0.00 0.00 3.25
3800 4834 4.469227 ACATGCTCTCTTCACTCTTGGTAT 59.531 41.667 0.00 0.00 0.00 2.73
3801 4835 5.046014 ACATGCTCTCTTCACTCTTGGTATT 60.046 40.000 0.00 0.00 0.00 1.89
3802 4836 4.825422 TGCTCTCTTCACTCTTGGTATTG 58.175 43.478 0.00 0.00 0.00 1.90
3803 4837 3.620821 GCTCTCTTCACTCTTGGTATTGC 59.379 47.826 0.00 0.00 0.00 3.56
3804 4838 4.622695 GCTCTCTTCACTCTTGGTATTGCT 60.623 45.833 0.00 0.00 0.00 3.91
3805 4839 5.486526 CTCTCTTCACTCTTGGTATTGCTT 58.513 41.667 0.00 0.00 0.00 3.91
3806 4840 5.869579 TCTCTTCACTCTTGGTATTGCTTT 58.130 37.500 0.00 0.00 0.00 3.51
3807 4841 6.299141 TCTCTTCACTCTTGGTATTGCTTTT 58.701 36.000 0.00 0.00 0.00 2.27
3808 4842 6.205464 TCTCTTCACTCTTGGTATTGCTTTTG 59.795 38.462 0.00 0.00 0.00 2.44
3810 4844 3.255642 TCACTCTTGGTATTGCTTTTGCC 59.744 43.478 0.00 0.00 46.87 4.52
3811 4845 2.228822 ACTCTTGGTATTGCTTTTGCCG 59.771 45.455 0.00 0.00 46.87 5.69
3812 4846 1.543802 TCTTGGTATTGCTTTTGCCGG 59.456 47.619 0.00 0.00 46.87 6.13
3813 4847 0.037790 TTGGTATTGCTTTTGCCGGC 60.038 50.000 22.73 22.73 46.87 6.13
3814 4848 1.153647 GGTATTGCTTTTGCCGGCC 60.154 57.895 26.77 8.57 46.87 6.13
3815 4849 1.589113 GTATTGCTTTTGCCGGCCA 59.411 52.632 26.77 11.12 46.87 5.36
3816 4850 0.458370 GTATTGCTTTTGCCGGCCAG 60.458 55.000 26.77 18.24 46.87 4.85
3817 4851 2.224495 TATTGCTTTTGCCGGCCAGC 62.224 55.000 27.29 27.29 46.87 4.85
3819 4853 4.729856 GCTTTTGCCGGCCAGCAG 62.730 66.667 28.42 18.81 45.13 4.24
3820 4854 2.985282 CTTTTGCCGGCCAGCAGA 60.985 61.111 26.77 6.96 45.13 4.26
3821 4855 2.520500 TTTTGCCGGCCAGCAGAA 60.521 55.556 26.77 13.52 45.13 3.02
3822 4856 2.482296 CTTTTGCCGGCCAGCAGAAG 62.482 60.000 24.93 24.93 45.12 2.85
3823 4857 2.974692 TTTTGCCGGCCAGCAGAAGA 62.975 55.000 26.77 1.98 45.13 2.87
3824 4858 3.907260 TTGCCGGCCAGCAGAAGAG 62.907 63.158 26.77 0.00 45.13 2.85
3826 4860 3.710722 CCGGCCAGCAGAAGAGGT 61.711 66.667 2.24 0.00 0.00 3.85
3827 4861 2.348998 CGGCCAGCAGAAGAGGTT 59.651 61.111 2.24 0.00 0.00 3.50
3828 4862 1.596934 CGGCCAGCAGAAGAGGTTA 59.403 57.895 2.24 0.00 0.00 2.85
3829 4863 0.179000 CGGCCAGCAGAAGAGGTTAT 59.821 55.000 2.24 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.107654 CCCCTCCATTTGTCGTCTCC 60.108 60.000 0.00 0.00 0.00 3.71
1 2 0.107654 CCCCCTCCATTTGTCGTCTC 60.108 60.000 0.00 0.00 0.00 3.36
3 4 0.676782 CACCCCCTCCATTTGTCGTC 60.677 60.000 0.00 0.00 0.00 4.20
4 5 1.378762 CACCCCCTCCATTTGTCGT 59.621 57.895 0.00 0.00 0.00 4.34
5 6 1.378514 CCACCCCCTCCATTTGTCG 60.379 63.158 0.00 0.00 0.00 4.35
6 7 0.611896 CACCACCCCCTCCATTTGTC 60.612 60.000 0.00 0.00 0.00 3.18
8 9 0.701731 TACACCACCCCCTCCATTTG 59.298 55.000 0.00 0.00 0.00 2.32
9 10 0.999712 CTACACCACCCCCTCCATTT 59.000 55.000 0.00 0.00 0.00 2.32
10 11 0.919289 CCTACACCACCCCCTCCATT 60.919 60.000 0.00 0.00 0.00 3.16
11 12 1.307866 CCTACACCACCCCCTCCAT 60.308 63.158 0.00 0.00 0.00 3.41
12 13 2.051050 TTCCTACACCACCCCCTCCA 62.051 60.000 0.00 0.00 0.00 3.86
13 14 1.229723 TTCCTACACCACCCCCTCC 60.230 63.158 0.00 0.00 0.00 4.30
14 15 1.272554 CCTTCCTACACCACCCCCTC 61.273 65.000 0.00 0.00 0.00 4.30
15 16 1.229853 CCTTCCTACACCACCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
16 17 2.306384 CCCTTCCTACACCACCCCC 61.306 68.421 0.00 0.00 0.00 5.40
17 18 0.843343 TTCCCTTCCTACACCACCCC 60.843 60.000 0.00 0.00 0.00 4.95
18 19 0.327259 GTTCCCTTCCTACACCACCC 59.673 60.000 0.00 0.00 0.00 4.61
19 20 1.061546 TGTTCCCTTCCTACACCACC 58.938 55.000 0.00 0.00 0.00 4.61
20 21 2.158726 TGTTGTTCCCTTCCTACACCAC 60.159 50.000 0.00 0.00 0.00 4.16
21 22 2.128535 TGTTGTTCCCTTCCTACACCA 58.871 47.619 0.00 0.00 0.00 4.17
22 23 2.943036 TGTTGTTCCCTTCCTACACC 57.057 50.000 0.00 0.00 0.00 4.16
23 24 3.146847 CCTTGTTGTTCCCTTCCTACAC 58.853 50.000 0.00 0.00 0.00 2.90
24 25 2.107552 CCCTTGTTGTTCCCTTCCTACA 59.892 50.000 0.00 0.00 0.00 2.74
25 26 2.791655 CCCTTGTTGTTCCCTTCCTAC 58.208 52.381 0.00 0.00 0.00 3.18
26 27 1.074889 GCCCTTGTTGTTCCCTTCCTA 59.925 52.381 0.00 0.00 0.00 2.94
27 28 0.178961 GCCCTTGTTGTTCCCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
28 29 0.178961 AGCCCTTGTTGTTCCCTTCC 60.179 55.000 0.00 0.00 0.00 3.46
29 30 1.341209 CAAGCCCTTGTTGTTCCCTTC 59.659 52.381 0.00 0.00 35.92 3.46
30 31 1.413118 CAAGCCCTTGTTGTTCCCTT 58.587 50.000 0.00 0.00 35.92 3.95
31 32 0.469892 CCAAGCCCTTGTTGTTCCCT 60.470 55.000 7.21 0.00 38.85 4.20
32 33 0.469144 TCCAAGCCCTTGTTGTTCCC 60.469 55.000 7.21 0.00 38.85 3.97
33 34 1.273327 CATCCAAGCCCTTGTTGTTCC 59.727 52.381 7.21 0.00 38.85 3.62
34 35 1.963515 ACATCCAAGCCCTTGTTGTTC 59.036 47.619 7.21 0.00 38.85 3.18
35 36 1.963515 GACATCCAAGCCCTTGTTGTT 59.036 47.619 12.27 1.81 38.85 2.83
36 37 1.620822 GACATCCAAGCCCTTGTTGT 58.379 50.000 11.35 11.35 38.85 3.32
37 38 0.523072 CGACATCCAAGCCCTTGTTG 59.477 55.000 7.21 6.89 38.85 3.33
38 39 0.110486 ACGACATCCAAGCCCTTGTT 59.890 50.000 7.21 0.00 38.85 2.83
39 40 0.321653 GACGACATCCAAGCCCTTGT 60.322 55.000 7.21 0.00 38.85 3.16
40 41 1.361668 CGACGACATCCAAGCCCTTG 61.362 60.000 1.05 1.05 40.13 3.61
41 42 1.079127 CGACGACATCCAAGCCCTT 60.079 57.895 0.00 0.00 0.00 3.95
42 43 1.330655 ATCGACGACATCCAAGCCCT 61.331 55.000 0.00 0.00 0.00 5.19
43 44 0.876342 GATCGACGACATCCAAGCCC 60.876 60.000 0.00 0.00 0.00 5.19
44 45 1.209275 CGATCGACGACATCCAAGCC 61.209 60.000 10.26 0.00 45.77 4.35
45 46 1.812214 GCGATCGACGACATCCAAGC 61.812 60.000 21.57 0.00 45.77 4.01
46 47 2.208074 GCGATCGACGACATCCAAG 58.792 57.895 21.57 0.00 45.77 3.61
47 48 4.395080 GCGATCGACGACATCCAA 57.605 55.556 21.57 0.00 45.77 3.53
56 57 3.740384 AAAAACAACGGCGATCGAC 57.260 47.368 21.57 17.00 42.43 4.20
104 105 0.523072 GGCGACAGTCATGCAAACAT 59.477 50.000 0.41 0.00 36.79 2.71
105 106 1.514678 GGGCGACAGTCATGCAAACA 61.515 55.000 0.41 0.00 0.00 2.83
106 107 1.210155 GGGCGACAGTCATGCAAAC 59.790 57.895 0.41 0.00 0.00 2.93
107 108 2.324330 CGGGCGACAGTCATGCAAA 61.324 57.895 0.41 0.00 0.00 3.68
108 109 2.741985 CGGGCGACAGTCATGCAA 60.742 61.111 0.41 0.00 0.00 4.08
111 112 1.577328 AAAAGCGGGCGACAGTCATG 61.577 55.000 0.41 0.00 0.00 3.07
112 113 1.302511 AAAAGCGGGCGACAGTCAT 60.303 52.632 0.41 0.00 0.00 3.06
113 114 2.110213 AAAAGCGGGCGACAGTCA 59.890 55.556 0.41 0.00 0.00 3.41
114 115 0.947180 TACAAAAGCGGGCGACAGTC 60.947 55.000 0.00 0.00 0.00 3.51
115 116 0.533308 TTACAAAAGCGGGCGACAGT 60.533 50.000 0.00 0.00 0.00 3.55
116 117 0.589223 TTTACAAAAGCGGGCGACAG 59.411 50.000 0.00 0.00 0.00 3.51
117 118 1.240256 ATTTACAAAAGCGGGCGACA 58.760 45.000 0.00 0.00 0.00 4.35
118 119 2.341318 AATTTACAAAAGCGGGCGAC 57.659 45.000 0.00 0.00 0.00 5.19
119 120 5.297278 ACATATAATTTACAAAAGCGGGCGA 59.703 36.000 0.00 0.00 0.00 5.54
120 121 5.516090 ACATATAATTTACAAAAGCGGGCG 58.484 37.500 0.00 0.00 0.00 6.13
121 122 8.132995 AGTTACATATAATTTACAAAAGCGGGC 58.867 33.333 0.00 0.00 0.00 6.13
138 139 8.197439 GGGCAGCTTTCATTTAAAGTTACATAT 58.803 33.333 0.00 0.00 45.46 1.78
139 140 7.177568 TGGGCAGCTTTCATTTAAAGTTACATA 59.822 33.333 0.00 0.00 45.46 2.29
140 141 6.014669 TGGGCAGCTTTCATTTAAAGTTACAT 60.015 34.615 0.00 0.00 45.46 2.29
141 142 5.303078 TGGGCAGCTTTCATTTAAAGTTACA 59.697 36.000 0.00 0.00 45.46 2.41
142 143 5.778862 TGGGCAGCTTTCATTTAAAGTTAC 58.221 37.500 0.00 0.00 45.46 2.50
143 144 6.014669 ACATGGGCAGCTTTCATTTAAAGTTA 60.015 34.615 0.00 0.00 45.46 2.24
144 145 4.953940 TGGGCAGCTTTCATTTAAAGTT 57.046 36.364 0.00 0.00 45.46 2.66
145 146 4.284234 ACATGGGCAGCTTTCATTTAAAGT 59.716 37.500 0.00 0.00 45.46 2.66
146 147 4.824289 ACATGGGCAGCTTTCATTTAAAG 58.176 39.130 0.00 0.00 46.29 1.85
147 148 4.888326 ACATGGGCAGCTTTCATTTAAA 57.112 36.364 0.00 0.00 0.00 1.52
148 149 4.888326 AACATGGGCAGCTTTCATTTAA 57.112 36.364 0.00 0.00 0.00 1.52
149 150 4.888326 AAACATGGGCAGCTTTCATTTA 57.112 36.364 0.00 0.00 0.00 1.40
150 151 3.775261 AAACATGGGCAGCTTTCATTT 57.225 38.095 0.00 0.00 0.00 2.32
151 152 3.577848 TGTAAACATGGGCAGCTTTCATT 59.422 39.130 0.00 0.00 0.00 2.57
152 153 3.164268 TGTAAACATGGGCAGCTTTCAT 58.836 40.909 0.00 0.00 0.00 2.57
153 154 2.591923 TGTAAACATGGGCAGCTTTCA 58.408 42.857 0.00 0.00 0.00 2.69
154 155 3.874392 ATGTAAACATGGGCAGCTTTC 57.126 42.857 0.00 0.00 34.83 2.62
177 178 2.745281 CCTCGCCTAAATCGGACAAAAA 59.255 45.455 0.00 0.00 0.00 1.94
178 179 2.352388 CCTCGCCTAAATCGGACAAAA 58.648 47.619 0.00 0.00 0.00 2.44
179 180 2.010043 GCCTCGCCTAAATCGGACAAA 61.010 52.381 0.00 0.00 0.00 2.83
180 181 0.461339 GCCTCGCCTAAATCGGACAA 60.461 55.000 0.00 0.00 0.00 3.18
181 182 1.143183 GCCTCGCCTAAATCGGACA 59.857 57.895 0.00 0.00 0.00 4.02
182 183 1.594564 GGCCTCGCCTAAATCGGAC 60.595 63.158 0.00 0.00 46.69 4.79
183 184 2.819550 GGCCTCGCCTAAATCGGA 59.180 61.111 0.00 0.00 46.69 4.55
199 200 3.003173 TTGTGGCCTCCTCCTCGG 61.003 66.667 3.32 0.00 0.00 4.63
200 201 1.903877 ATGTTGTGGCCTCCTCCTCG 61.904 60.000 3.32 0.00 0.00 4.63
201 202 0.393537 CATGTTGTGGCCTCCTCCTC 60.394 60.000 3.32 0.00 0.00 3.71
202 203 0.842030 TCATGTTGTGGCCTCCTCCT 60.842 55.000 3.32 0.00 0.00 3.69
203 204 0.678048 GTCATGTTGTGGCCTCCTCC 60.678 60.000 3.32 0.00 0.00 4.30
204 205 0.036732 TGTCATGTTGTGGCCTCCTC 59.963 55.000 3.32 0.00 0.00 3.71
205 206 0.700564 ATGTCATGTTGTGGCCTCCT 59.299 50.000 3.32 0.00 0.00 3.69
206 207 0.813184 CATGTCATGTTGTGGCCTCC 59.187 55.000 3.32 0.00 0.00 4.30
207 208 1.470098 GTCATGTCATGTTGTGGCCTC 59.530 52.381 12.54 0.00 0.00 4.70
208 209 1.538047 GTCATGTCATGTTGTGGCCT 58.462 50.000 12.54 0.00 0.00 5.19
209 210 0.168788 CGTCATGTCATGTTGTGGCC 59.831 55.000 12.54 0.00 0.00 5.36
210 211 0.168788 CCGTCATGTCATGTTGTGGC 59.831 55.000 12.54 0.00 0.00 5.01
211 212 0.168788 GCCGTCATGTCATGTTGTGG 59.831 55.000 12.54 10.74 0.00 4.17
212 213 0.179217 CGCCGTCATGTCATGTTGTG 60.179 55.000 12.54 5.64 0.00 3.33
213 214 1.911293 GCGCCGTCATGTCATGTTGT 61.911 55.000 12.54 0.00 0.00 3.32
214 215 1.226101 GCGCCGTCATGTCATGTTG 60.226 57.895 12.54 6.42 0.00 3.33
215 216 1.361668 GAGCGCCGTCATGTCATGTT 61.362 55.000 12.54 0.00 0.00 2.71
216 217 1.811266 GAGCGCCGTCATGTCATGT 60.811 57.895 12.54 0.00 0.00 3.21
217 218 1.520120 AGAGCGCCGTCATGTCATG 60.520 57.895 2.29 6.47 0.00 3.07
218 219 1.520120 CAGAGCGCCGTCATGTCAT 60.520 57.895 2.29 0.00 0.00 3.06
219 220 2.125952 CAGAGCGCCGTCATGTCA 60.126 61.111 2.29 0.00 0.00 3.58
220 221 2.835701 TTCCAGAGCGCCGTCATGTC 62.836 60.000 2.29 0.00 0.00 3.06
221 222 2.244117 ATTCCAGAGCGCCGTCATGT 62.244 55.000 2.29 0.00 0.00 3.21
222 223 0.249447 TATTCCAGAGCGCCGTCATG 60.249 55.000 2.29 0.00 0.00 3.07
223 224 0.249489 GTATTCCAGAGCGCCGTCAT 60.249 55.000 2.29 0.00 0.00 3.06
224 225 1.141019 GTATTCCAGAGCGCCGTCA 59.859 57.895 2.29 0.00 0.00 4.35
225 226 1.944676 CGTATTCCAGAGCGCCGTC 60.945 63.158 2.29 0.00 0.00 4.79
226 227 2.104331 CGTATTCCAGAGCGCCGT 59.896 61.111 2.29 0.00 0.00 5.68
227 228 2.658593 CCGTATTCCAGAGCGCCG 60.659 66.667 2.29 0.00 0.00 6.46
228 229 2.967615 GCCGTATTCCAGAGCGCC 60.968 66.667 2.29 0.00 0.00 6.53
229 230 3.330853 CGCCGTATTCCAGAGCGC 61.331 66.667 0.00 0.00 40.35 5.92
231 232 1.480219 CGAACGCCGTATTCCAGAGC 61.480 60.000 0.00 0.00 0.00 4.09
232 233 2.578369 CGAACGCCGTATTCCAGAG 58.422 57.895 0.00 0.00 0.00 3.35
233 234 4.798288 CGAACGCCGTATTCCAGA 57.202 55.556 0.00 0.00 0.00 3.86
242 243 3.458579 CGACACAGACGAACGCCG 61.459 66.667 0.00 0.00 45.44 6.46
243 244 3.103911 CCGACACAGACGAACGCC 61.104 66.667 0.00 0.00 0.00 5.68
244 245 3.103911 CCCGACACAGACGAACGC 61.104 66.667 0.00 0.00 0.00 4.84
245 246 3.103911 GCCCGACACAGACGAACG 61.104 66.667 0.00 0.00 0.00 3.95
246 247 2.737376 GGCCCGACACAGACGAAC 60.737 66.667 0.00 0.00 0.00 3.95
247 248 4.351938 CGGCCCGACACAGACGAA 62.352 66.667 0.00 0.00 0.00 3.85
267 268 4.194720 AGGTCGATGAGCGTCGGC 62.195 66.667 11.67 9.94 44.95 5.54
268 269 2.024871 GAGGTCGATGAGCGTCGG 59.975 66.667 11.67 0.00 41.74 4.79
269 270 1.583967 GTGAGGTCGATGAGCGTCG 60.584 63.158 5.78 5.78 42.74 5.12
270 271 1.583967 CGTGAGGTCGATGAGCGTC 60.584 63.158 0.00 0.00 41.80 5.19
271 272 2.485582 CGTGAGGTCGATGAGCGT 59.514 61.111 0.00 0.00 41.80 5.07
288 289 2.993264 TTGTCGTCCTCGGGGTCC 60.993 66.667 0.00 0.00 37.69 4.46
289 290 2.260743 GTTGTCGTCCTCGGGGTC 59.739 66.667 0.00 0.00 37.69 4.46
290 291 3.677648 CGTTGTCGTCCTCGGGGT 61.678 66.667 0.00 0.00 37.69 4.95
291 292 3.367743 TCGTTGTCGTCCTCGGGG 61.368 66.667 0.00 0.00 38.33 5.73
292 293 2.126580 GTCGTTGTCGTCCTCGGG 60.127 66.667 0.00 0.00 38.33 5.14
293 294 2.501222 CGTCGTTGTCGTCCTCGG 60.501 66.667 0.00 0.00 38.33 4.63
294 295 1.791283 GTCGTCGTTGTCGTCCTCG 60.791 63.158 0.00 0.00 38.33 4.63
295 296 1.791283 CGTCGTCGTTGTCGTCCTC 60.791 63.158 0.00 0.00 38.33 3.71
296 297 2.250485 CGTCGTCGTTGTCGTCCT 59.750 61.111 0.00 0.00 38.33 3.85
297 298 3.456039 GCGTCGTCGTTGTCGTCC 61.456 66.667 3.66 0.00 39.49 4.79
298 299 2.498761 TAGGCGTCGTCGTTGTCGTC 62.499 60.000 3.66 0.00 39.49 4.20
299 300 2.504461 CTAGGCGTCGTCGTTGTCGT 62.504 60.000 3.66 0.00 39.49 4.34
300 301 1.862147 CTAGGCGTCGTCGTTGTCG 60.862 63.158 3.66 0.00 39.49 4.35
301 302 1.513586 CCTAGGCGTCGTCGTTGTC 60.514 63.158 0.00 0.00 39.49 3.18
302 303 2.564975 CCTAGGCGTCGTCGTTGT 59.435 61.111 0.00 0.00 39.49 3.32
303 304 2.202570 CCCTAGGCGTCGTCGTTG 60.203 66.667 2.05 0.00 39.49 4.10
304 305 4.125695 GCCCTAGGCGTCGTCGTT 62.126 66.667 2.05 0.00 39.62 3.85
324 325 2.142418 CTAAATTACGAGGCGGCGCG 62.142 60.000 31.67 31.67 33.86 6.86
325 326 1.563173 CTAAATTACGAGGCGGCGC 59.437 57.895 26.17 26.17 33.86 6.53
326 327 2.222592 CCTAAATTACGAGGCGGCG 58.777 57.895 0.51 0.51 37.29 6.46
331 332 6.496338 AAGAAAACAGCCTAAATTACGAGG 57.504 37.500 0.00 0.00 35.78 4.63
332 333 8.797266 AAAAAGAAAACAGCCTAAATTACGAG 57.203 30.769 0.00 0.00 0.00 4.18
356 357 5.864474 ACGCGTCCATATTTGCATTTAAAAA 59.136 32.000 5.58 0.00 0.00 1.94
357 358 5.287274 CACGCGTCCATATTTGCATTTAAAA 59.713 36.000 9.86 0.00 0.00 1.52
358 359 4.795795 CACGCGTCCATATTTGCATTTAAA 59.204 37.500 9.86 0.00 0.00 1.52
359 360 4.346970 CACGCGTCCATATTTGCATTTAA 58.653 39.130 9.86 0.00 0.00 1.52
360 361 3.242903 CCACGCGTCCATATTTGCATTTA 60.243 43.478 9.86 0.00 0.00 1.40
361 362 2.479389 CCACGCGTCCATATTTGCATTT 60.479 45.455 9.86 0.00 0.00 2.32
362 363 1.065401 CCACGCGTCCATATTTGCATT 59.935 47.619 9.86 0.00 0.00 3.56
363 364 0.662619 CCACGCGTCCATATTTGCAT 59.337 50.000 9.86 0.00 0.00 3.96
364 365 0.391793 TCCACGCGTCCATATTTGCA 60.392 50.000 9.86 0.00 0.00 4.08
365 366 0.027586 GTCCACGCGTCCATATTTGC 59.972 55.000 9.86 0.00 0.00 3.68
366 367 1.593006 GAGTCCACGCGTCCATATTTG 59.407 52.381 9.86 0.00 0.00 2.32
367 368 1.480954 AGAGTCCACGCGTCCATATTT 59.519 47.619 9.86 0.00 0.00 1.40
368 369 1.067212 GAGAGTCCACGCGTCCATATT 59.933 52.381 9.86 0.00 0.00 1.28
369 370 0.669077 GAGAGTCCACGCGTCCATAT 59.331 55.000 9.86 0.00 0.00 1.78
370 371 1.712018 CGAGAGTCCACGCGTCCATA 61.712 60.000 9.86 0.00 0.00 2.74
371 372 2.885861 GAGAGTCCACGCGTCCAT 59.114 61.111 9.86 0.00 0.00 3.41
372 373 3.733960 CGAGAGTCCACGCGTCCA 61.734 66.667 9.86 0.00 0.00 4.02
379 380 3.591254 AAAGCCGGCGAGAGTCCAC 62.591 63.158 23.20 0.00 0.00 4.02
380 381 3.296709 GAAAGCCGGCGAGAGTCCA 62.297 63.158 23.20 0.00 0.00 4.02
381 382 2.509561 GAAAGCCGGCGAGAGTCC 60.510 66.667 23.20 3.46 0.00 3.85
382 383 2.881352 CGAAAGCCGGCGAGAGTC 60.881 66.667 23.20 13.74 33.91 3.36
383 384 3.681835 ACGAAAGCCGGCGAGAGT 61.682 61.111 23.20 17.42 43.93 3.24
384 385 3.181967 CACGAAAGCCGGCGAGAG 61.182 66.667 23.20 16.72 43.93 3.20
385 386 4.735132 CCACGAAAGCCGGCGAGA 62.735 66.667 23.20 0.00 43.93 4.04
398 399 2.981400 AAACATTAAAGTCGGCCACG 57.019 45.000 2.24 0.00 42.74 4.94
399 400 8.803799 CATTAATTAAACATTAAAGTCGGCCAC 58.196 33.333 2.24 0.00 0.00 5.01
400 401 8.524487 ACATTAATTAAACATTAAAGTCGGCCA 58.476 29.630 2.24 0.00 0.00 5.36
401 402 8.920509 ACATTAATTAAACATTAAAGTCGGCC 57.079 30.769 1.21 0.00 0.00 6.13
461 462 1.594862 CAATTTTGACGCCGCCAAAAA 59.405 42.857 14.96 5.17 43.81 1.94
462 463 1.212616 CAATTTTGACGCCGCCAAAA 58.787 45.000 13.47 13.47 44.44 2.44
463 464 0.598680 CCAATTTTGACGCCGCCAAA 60.599 50.000 0.00 0.00 0.00 3.28
464 465 1.006805 CCAATTTTGACGCCGCCAA 60.007 52.632 0.00 0.00 0.00 4.52
465 466 2.136196 GACCAATTTTGACGCCGCCA 62.136 55.000 0.00 0.00 0.00 5.69
466 467 1.443702 GACCAATTTTGACGCCGCC 60.444 57.895 0.00 0.00 0.00 6.13
467 468 0.454452 GAGACCAATTTTGACGCCGC 60.454 55.000 0.00 0.00 0.00 6.53
468 469 0.871722 TGAGACCAATTTTGACGCCG 59.128 50.000 0.00 0.00 0.00 6.46
469 470 1.200020 CCTGAGACCAATTTTGACGCC 59.800 52.381 0.00 0.00 0.00 5.68
470 471 1.401539 GCCTGAGACCAATTTTGACGC 60.402 52.381 0.00 0.00 0.00 5.19
471 472 1.200020 GGCCTGAGACCAATTTTGACG 59.800 52.381 0.00 0.00 0.00 4.35
472 473 2.029918 GTGGCCTGAGACCAATTTTGAC 60.030 50.000 3.32 0.00 39.39 3.18
473 474 2.158475 AGTGGCCTGAGACCAATTTTGA 60.158 45.455 3.32 0.00 39.39 2.69
474 475 2.029649 CAGTGGCCTGAGACCAATTTTG 60.030 50.000 3.32 0.00 41.50 2.44
475 476 2.242043 CAGTGGCCTGAGACCAATTTT 58.758 47.619 3.32 0.00 41.50 1.82
476 477 1.145738 ACAGTGGCCTGAGACCAATTT 59.854 47.619 3.32 0.00 41.50 1.82
477 478 0.773644 ACAGTGGCCTGAGACCAATT 59.226 50.000 3.32 0.00 41.50 2.32
478 479 0.773644 AACAGTGGCCTGAGACCAAT 59.226 50.000 3.32 0.00 41.50 3.16
479 480 0.179020 CAACAGTGGCCTGAGACCAA 60.179 55.000 3.32 0.00 41.50 3.67
480 481 1.451504 CAACAGTGGCCTGAGACCA 59.548 57.895 3.32 0.00 41.50 4.02
481 482 1.302832 CCAACAGTGGCCTGAGACC 60.303 63.158 3.32 0.00 41.50 3.85
482 483 1.302832 CCCAACAGTGGCCTGAGAC 60.303 63.158 3.32 0.00 44.46 3.36
483 484 3.160585 CCCAACAGTGGCCTGAGA 58.839 61.111 3.32 0.00 44.46 3.27
484 485 2.674380 GCCCAACAGTGGCCTGAG 60.674 66.667 3.32 0.00 44.46 3.35
485 486 4.641645 CGCCCAACAGTGGCCTGA 62.642 66.667 3.32 0.00 46.48 3.86
491 492 3.027170 GATCGTGCGCCCAACAGTG 62.027 63.158 4.18 0.00 0.00 3.66
492 493 2.742372 GATCGTGCGCCCAACAGT 60.742 61.111 4.18 0.00 0.00 3.55
493 494 3.499737 GGATCGTGCGCCCAACAG 61.500 66.667 4.18 0.00 0.00 3.16
494 495 3.834013 TTGGATCGTGCGCCCAACA 62.834 57.895 10.53 0.00 35.25 3.33
495 496 1.933115 ATTTGGATCGTGCGCCCAAC 61.933 55.000 13.68 0.30 39.43 3.77
496 497 1.677300 ATTTGGATCGTGCGCCCAA 60.677 52.632 10.53 10.53 38.10 4.12
497 498 2.045438 ATTTGGATCGTGCGCCCA 60.045 55.556 4.18 0.35 0.00 5.36
498 499 2.408835 CATTTGGATCGTGCGCCC 59.591 61.111 4.18 0.00 0.00 6.13
499 500 2.278142 GCATTTGGATCGTGCGCC 60.278 61.111 4.18 0.00 0.00 6.53
502 503 0.248215 CTTCCGCATTTGGATCGTGC 60.248 55.000 2.15 2.15 38.00 5.34
503 504 0.248215 GCTTCCGCATTTGGATCGTG 60.248 55.000 0.00 0.00 38.00 4.35
504 505 1.705337 CGCTTCCGCATTTGGATCGT 61.705 55.000 0.00 0.00 38.00 3.73
505 506 1.010797 CGCTTCCGCATTTGGATCG 60.011 57.895 0.00 0.00 38.00 3.69
506 507 1.356624 CCGCTTCCGCATTTGGATC 59.643 57.895 0.00 0.00 38.00 3.36
507 508 2.120909 CCCGCTTCCGCATTTGGAT 61.121 57.895 0.00 0.00 38.00 3.41
508 509 2.749839 CCCGCTTCCGCATTTGGA 60.750 61.111 0.00 0.00 35.83 3.53
509 510 4.496927 GCCCGCTTCCGCATTTGG 62.497 66.667 0.00 0.00 35.30 3.28
510 511 2.941964 GATGCCCGCTTCCGCATTTG 62.942 60.000 0.00 0.00 45.52 2.32
511 512 2.755469 ATGCCCGCTTCCGCATTT 60.755 55.556 0.00 0.00 43.05 2.32
512 513 3.211963 GATGCCCGCTTCCGCATT 61.212 61.111 0.00 0.00 45.52 3.56
523 524 3.771160 AGACGGACACGGATGCCC 61.771 66.667 0.00 0.00 46.48 5.36
524 525 2.509336 CAGACGGACACGGATGCC 60.509 66.667 0.00 0.00 46.48 4.40
525 526 2.509336 CCAGACGGACACGGATGC 60.509 66.667 0.00 0.00 46.48 3.91
526 527 1.153823 GACCAGACGGACACGGATG 60.154 63.158 0.00 0.00 46.48 3.51
527 528 2.697761 CGACCAGACGGACACGGAT 61.698 63.158 0.00 0.00 46.48 4.18
528 529 3.359523 CGACCAGACGGACACGGA 61.360 66.667 0.00 0.00 46.48 4.69
529 530 3.359523 TCGACCAGACGGACACGG 61.360 66.667 0.00 0.00 46.48 4.94
541 542 1.670791 TTTGTCTGTTTGGGTCGACC 58.329 50.000 27.04 27.04 40.81 4.79
542 543 3.691498 CTTTTTGTCTGTTTGGGTCGAC 58.309 45.455 7.13 7.13 0.00 4.20
543 544 2.098443 GCTTTTTGTCTGTTTGGGTCGA 59.902 45.455 0.00 0.00 0.00 4.20
544 545 2.159310 TGCTTTTTGTCTGTTTGGGTCG 60.159 45.455 0.00 0.00 0.00 4.79
545 546 3.518634 TGCTTTTTGTCTGTTTGGGTC 57.481 42.857 0.00 0.00 0.00 4.46
546 547 3.971245 TTGCTTTTTGTCTGTTTGGGT 57.029 38.095 0.00 0.00 0.00 4.51
547 548 3.061965 CGTTTGCTTTTTGTCTGTTTGGG 59.938 43.478 0.00 0.00 0.00 4.12
548 549 3.923461 TCGTTTGCTTTTTGTCTGTTTGG 59.077 39.130 0.00 0.00 0.00 3.28
549 550 5.508124 TTCGTTTGCTTTTTGTCTGTTTG 57.492 34.783 0.00 0.00 0.00 2.93
550 551 6.367422 TGATTTCGTTTGCTTTTTGTCTGTTT 59.633 30.769 0.00 0.00 0.00 2.83
551 552 5.866633 TGATTTCGTTTGCTTTTTGTCTGTT 59.133 32.000 0.00 0.00 0.00 3.16
552 553 5.406649 TGATTTCGTTTGCTTTTTGTCTGT 58.593 33.333 0.00 0.00 0.00 3.41
553 554 5.947503 TGATTTCGTTTGCTTTTTGTCTG 57.052 34.783 0.00 0.00 0.00 3.51
554 555 6.272318 TGATGATTTCGTTTGCTTTTTGTCT 58.728 32.000 0.00 0.00 0.00 3.41
555 556 6.509317 TGATGATTTCGTTTGCTTTTTGTC 57.491 33.333 0.00 0.00 0.00 3.18
556 557 6.146021 GGATGATGATTTCGTTTGCTTTTTGT 59.854 34.615 0.00 0.00 0.00 2.83
557 558 6.527957 GGATGATGATTTCGTTTGCTTTTTG 58.472 36.000 0.00 0.00 0.00 2.44
558 559 5.345741 CGGATGATGATTTCGTTTGCTTTTT 59.654 36.000 0.00 0.00 0.00 1.94
559 560 4.858692 CGGATGATGATTTCGTTTGCTTTT 59.141 37.500 0.00 0.00 0.00 2.27
560 561 4.082787 ACGGATGATGATTTCGTTTGCTTT 60.083 37.500 0.00 0.00 0.00 3.51
561 562 3.440173 ACGGATGATGATTTCGTTTGCTT 59.560 39.130 0.00 0.00 0.00 3.91
562 563 3.009723 ACGGATGATGATTTCGTTTGCT 58.990 40.909 0.00 0.00 0.00 3.91
563 564 3.405170 ACGGATGATGATTTCGTTTGC 57.595 42.857 0.00 0.00 0.00 3.68
566 567 6.074302 CGATCTAAACGGATGATGATTTCGTT 60.074 38.462 0.00 0.00 44.34 3.85
567 568 5.402568 CGATCTAAACGGATGATGATTTCGT 59.597 40.000 0.00 0.00 35.48 3.85
568 569 5.837068 CGATCTAAACGGATGATGATTTCG 58.163 41.667 0.00 0.00 0.00 3.46
581 582 1.426041 CCAACGGGCCGATCTAAACG 61.426 60.000 35.78 7.53 0.00 3.60
582 583 0.108041 TCCAACGGGCCGATCTAAAC 60.108 55.000 35.78 0.00 0.00 2.01
583 584 0.177141 CTCCAACGGGCCGATCTAAA 59.823 55.000 35.78 11.43 0.00 1.85
584 585 0.974010 ACTCCAACGGGCCGATCTAA 60.974 55.000 35.78 12.55 0.00 2.10
585 586 0.974010 AACTCCAACGGGCCGATCTA 60.974 55.000 35.78 14.06 0.00 1.98
586 587 2.291043 AACTCCAACGGGCCGATCT 61.291 57.895 35.78 13.84 0.00 2.75
587 588 2.106683 CAACTCCAACGGGCCGATC 61.107 63.158 35.78 0.00 0.00 3.69
588 589 2.046314 CAACTCCAACGGGCCGAT 60.046 61.111 35.78 20.37 0.00 4.18
591 592 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
592 593 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
593 594 1.002087 ACTAAGAGCAACTCCAACGGG 59.998 52.381 0.00 0.00 0.00 5.28
594 595 2.457366 ACTAAGAGCAACTCCAACGG 57.543 50.000 0.00 0.00 0.00 4.44
595 596 3.058914 CCAAACTAAGAGCAACTCCAACG 60.059 47.826 0.00 0.00 0.00 4.10
596 597 4.023963 GTCCAAACTAAGAGCAACTCCAAC 60.024 45.833 0.00 0.00 0.00 3.77
597 598 4.134563 GTCCAAACTAAGAGCAACTCCAA 58.865 43.478 0.00 0.00 0.00 3.53
598 599 3.740115 GTCCAAACTAAGAGCAACTCCA 58.260 45.455 0.00 0.00 0.00 3.86
599 600 2.737252 CGTCCAAACTAAGAGCAACTCC 59.263 50.000 0.00 0.00 0.00 3.85
600 601 3.650139 TCGTCCAAACTAAGAGCAACTC 58.350 45.455 0.00 0.00 0.00 3.01
601 602 3.746045 TCGTCCAAACTAAGAGCAACT 57.254 42.857 0.00 0.00 0.00 3.16
602 603 5.169295 ACTATCGTCCAAACTAAGAGCAAC 58.831 41.667 0.00 0.00 0.00 4.17
603 604 5.401531 ACTATCGTCCAAACTAAGAGCAA 57.598 39.130 0.00 0.00 0.00 3.91
604 605 5.047590 TCAACTATCGTCCAAACTAAGAGCA 60.048 40.000 0.00 0.00 0.00 4.26
605 606 5.408356 TCAACTATCGTCCAAACTAAGAGC 58.592 41.667 0.00 0.00 0.00 4.09
606 607 7.884816 TTTCAACTATCGTCCAAACTAAGAG 57.115 36.000 0.00 0.00 0.00 2.85
607 608 7.876068 ACATTTCAACTATCGTCCAAACTAAGA 59.124 33.333 0.00 0.00 0.00 2.10
608 609 8.029642 ACATTTCAACTATCGTCCAAACTAAG 57.970 34.615 0.00 0.00 0.00 2.18
609 610 7.972832 ACATTTCAACTATCGTCCAAACTAA 57.027 32.000 0.00 0.00 0.00 2.24
610 611 9.093970 CATACATTTCAACTATCGTCCAAACTA 57.906 33.333 0.00 0.00 0.00 2.24
611 612 7.065803 CCATACATTTCAACTATCGTCCAAACT 59.934 37.037 0.00 0.00 0.00 2.66
612 613 7.148306 ACCATACATTTCAACTATCGTCCAAAC 60.148 37.037 0.00 0.00 0.00 2.93
613 614 6.882140 ACCATACATTTCAACTATCGTCCAAA 59.118 34.615 0.00 0.00 0.00 3.28
614 615 6.411376 ACCATACATTTCAACTATCGTCCAA 58.589 36.000 0.00 0.00 0.00 3.53
615 616 5.984725 ACCATACATTTCAACTATCGTCCA 58.015 37.500 0.00 0.00 0.00 4.02
616 617 6.423001 GGTACCATACATTTCAACTATCGTCC 59.577 42.308 7.15 0.00 0.00 4.79
617 618 7.404139 GGTACCATACATTTCAACTATCGTC 57.596 40.000 7.15 0.00 0.00 4.20
637 638 3.344515 GTCCATCTCAACAAAGGGGTAC 58.655 50.000 0.00 0.00 0.00 3.34
638 639 2.027561 CGTCCATCTCAACAAAGGGGTA 60.028 50.000 0.00 0.00 0.00 3.69
639 640 1.271379 CGTCCATCTCAACAAAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
640 641 1.453155 CGTCCATCTCAACAAAGGGG 58.547 55.000 0.00 0.00 0.00 4.79
641 642 1.003118 TCCGTCCATCTCAACAAAGGG 59.997 52.381 0.00 0.00 0.00 3.95
642 643 2.076863 GTCCGTCCATCTCAACAAAGG 58.923 52.381 0.00 0.00 0.00 3.11
643 644 1.726791 CGTCCGTCCATCTCAACAAAG 59.273 52.381 0.00 0.00 0.00 2.77
644 645 1.790755 CGTCCGTCCATCTCAACAAA 58.209 50.000 0.00 0.00 0.00 2.83
645 646 0.669318 GCGTCCGTCCATCTCAACAA 60.669 55.000 0.00 0.00 0.00 2.83
646 647 1.080093 GCGTCCGTCCATCTCAACA 60.080 57.895 0.00 0.00 0.00 3.33
647 648 1.810030 GGCGTCCGTCCATCTCAAC 60.810 63.158 0.00 0.00 0.00 3.18
648 649 2.577059 GGCGTCCGTCCATCTCAA 59.423 61.111 0.00 0.00 0.00 3.02
649 650 3.822192 CGGCGTCCGTCCATCTCA 61.822 66.667 9.69 0.00 42.73 3.27
650 651 4.570663 CCGGCGTCCGTCCATCTC 62.571 72.222 15.38 0.00 46.80 2.75
652 653 4.570663 CTCCGGCGTCCGTCCATC 62.571 72.222 15.38 0.00 46.80 3.51
655 656 2.847435 ATTTTCTCCGGCGTCCGTCC 62.847 60.000 15.38 0.00 46.80 4.79
656 657 1.017701 AATTTTCTCCGGCGTCCGTC 61.018 55.000 15.38 0.00 46.80 4.79
657 658 0.604511 AAATTTTCTCCGGCGTCCGT 60.605 50.000 15.38 0.00 46.80 4.69
659 660 0.879090 ACAAATTTTCTCCGGCGTCC 59.121 50.000 6.01 0.00 0.00 4.79
660 661 1.533731 TCACAAATTTTCTCCGGCGTC 59.466 47.619 6.01 0.00 0.00 5.19
661 662 1.600023 TCACAAATTTTCTCCGGCGT 58.400 45.000 6.01 0.00 0.00 5.68
662 663 2.785679 GATCACAAATTTTCTCCGGCG 58.214 47.619 0.00 0.00 0.00 6.46
663 664 2.161609 ACGATCACAAATTTTCTCCGGC 59.838 45.455 0.00 0.00 0.00 6.13
664 665 4.868171 TCTACGATCACAAATTTTCTCCGG 59.132 41.667 0.00 0.00 0.00 5.14
665 666 6.414079 CATCTACGATCACAAATTTTCTCCG 58.586 40.000 0.00 0.00 0.00 4.63
666 667 6.195165 GCATCTACGATCACAAATTTTCTCC 58.805 40.000 0.00 0.00 0.00 3.71
667 668 6.195165 GGCATCTACGATCACAAATTTTCTC 58.805 40.000 0.00 0.00 0.00 2.87
668 669 5.066505 GGGCATCTACGATCACAAATTTTCT 59.933 40.000 0.00 0.00 0.00 2.52
669 670 5.066505 AGGGCATCTACGATCACAAATTTTC 59.933 40.000 0.00 0.00 0.00 2.29
670 671 4.949856 AGGGCATCTACGATCACAAATTTT 59.050 37.500 0.00 0.00 0.00 1.82
671 672 4.526970 AGGGCATCTACGATCACAAATTT 58.473 39.130 0.00 0.00 0.00 1.82
672 673 4.156455 AGGGCATCTACGATCACAAATT 57.844 40.909 0.00 0.00 0.00 1.82
673 674 3.845781 AGGGCATCTACGATCACAAAT 57.154 42.857 0.00 0.00 0.00 2.32
674 675 3.531538 GAAGGGCATCTACGATCACAAA 58.468 45.455 0.00 0.00 0.00 2.83
675 676 2.158957 GGAAGGGCATCTACGATCACAA 60.159 50.000 0.00 0.00 0.00 3.33
676 677 1.412710 GGAAGGGCATCTACGATCACA 59.587 52.381 0.00 0.00 0.00 3.58
677 678 1.412710 TGGAAGGGCATCTACGATCAC 59.587 52.381 0.00 0.00 0.00 3.06
678 679 1.412710 GTGGAAGGGCATCTACGATCA 59.587 52.381 0.00 0.00 0.00 2.92
679 680 1.270358 GGTGGAAGGGCATCTACGATC 60.270 57.143 0.00 0.00 32.10 3.69
680 681 0.759346 GGTGGAAGGGCATCTACGAT 59.241 55.000 0.00 0.00 32.10 3.73
681 682 0.616395 TGGTGGAAGGGCATCTACGA 60.616 55.000 0.00 0.00 32.10 3.43
682 683 0.462047 GTGGTGGAAGGGCATCTACG 60.462 60.000 0.00 0.00 32.10 3.51
683 684 0.462047 CGTGGTGGAAGGGCATCTAC 60.462 60.000 0.00 0.00 0.00 2.59
684 685 1.904771 CGTGGTGGAAGGGCATCTA 59.095 57.895 0.00 0.00 0.00 1.98
685 686 2.671070 CGTGGTGGAAGGGCATCT 59.329 61.111 0.00 0.00 0.00 2.90
686 687 3.134127 GCGTGGTGGAAGGGCATC 61.134 66.667 0.00 0.00 0.00 3.91
687 688 4.740822 GGCGTGGTGGAAGGGCAT 62.741 66.667 0.00 0.00 0.00 4.40
689 690 2.830186 TAATGGCGTGGTGGAAGGGC 62.830 60.000 0.00 0.00 0.00 5.19
690 691 1.029947 GTAATGGCGTGGTGGAAGGG 61.030 60.000 0.00 0.00 0.00 3.95
691 692 1.366111 CGTAATGGCGTGGTGGAAGG 61.366 60.000 0.00 0.00 0.00 3.46
692 693 0.390603 TCGTAATGGCGTGGTGGAAG 60.391 55.000 0.00 0.00 0.00 3.46
693 694 0.035036 TTCGTAATGGCGTGGTGGAA 59.965 50.000 0.00 0.00 0.00 3.53
694 695 0.250793 ATTCGTAATGGCGTGGTGGA 59.749 50.000 0.00 0.00 0.00 4.02
695 696 0.655733 GATTCGTAATGGCGTGGTGG 59.344 55.000 0.00 0.00 0.00 4.61
696 697 1.062002 GTGATTCGTAATGGCGTGGTG 59.938 52.381 0.00 0.00 0.00 4.17
697 698 1.066430 AGTGATTCGTAATGGCGTGGT 60.066 47.619 0.00 0.00 0.00 4.16
698 699 1.327460 CAGTGATTCGTAATGGCGTGG 59.673 52.381 0.00 0.00 0.00 4.94
699 700 1.999735 ACAGTGATTCGTAATGGCGTG 59.000 47.619 0.00 0.00 0.00 5.34
700 701 2.380084 ACAGTGATTCGTAATGGCGT 57.620 45.000 0.00 0.00 0.00 5.68
701 702 2.215587 CGTACAGTGATTCGTAATGGCG 59.784 50.000 0.00 0.00 0.00 5.69
702 703 3.184541 ACGTACAGTGATTCGTAATGGC 58.815 45.455 0.00 0.00 34.78 4.40
728 729 1.928503 GATTTTGCCCAATGATGTGCG 59.071 47.619 0.00 0.00 31.94 5.34
738 739 2.357575 CGGCCATGGATTTTGCCCA 61.358 57.895 18.40 0.00 40.87 5.36
743 744 4.355151 GGGACGGCCATGGATTTT 57.645 55.556 18.40 0.00 35.15 1.82
821 822 4.373116 GCTTGGTCTCCGTGCGGA 62.373 66.667 13.01 13.01 42.90 5.54
996 1006 1.837499 GGAGAGGTACCCCATCCGG 60.837 68.421 8.74 0.00 31.46 5.14
1128 1141 1.589196 GAAGCGTTCGATCTCCGGG 60.589 63.158 0.00 0.00 39.14 5.73
1938 1951 2.740055 CAGGACCGCACACAGCTC 60.740 66.667 0.00 0.00 42.61 4.09
1974 1987 1.200716 CGCTCAACAATGTCAGCCATT 59.799 47.619 10.56 0.00 44.73 3.16
2064 2077 3.189080 TCTTCTGAACATCAACAATGGCG 59.811 43.478 0.00 0.00 39.90 5.69
2154 2167 0.687757 AGGTCGCATCTGCCTCCTTA 60.688 55.000 6.89 0.00 37.35 2.69
2169 2182 1.298014 CACCAGCTCCTCCAAGGTC 59.702 63.158 0.00 0.00 36.53 3.85
2220 2233 3.948851 GAACACCTTTCCGTTCTTCAAC 58.051 45.455 0.00 0.00 38.76 3.18
2424 2437 2.225727 CCTTTCAACTTTACCGAGTGCC 59.774 50.000 0.00 0.00 0.00 5.01
2451 2464 3.855950 GCTTGATGCTTGCATCTAAACAC 59.144 43.478 28.44 13.38 38.95 3.32
2452 2465 3.506844 TGCTTGATGCTTGCATCTAAACA 59.493 39.130 28.44 20.50 43.37 2.83
2481 2494 6.638610 TGGTTTCTCTTGAAATTCTTTTGCA 58.361 32.000 0.00 0.00 43.14 4.08
2543 2556 4.635324 CCTTCTCTTGGATTTTCTCTGCTC 59.365 45.833 0.00 0.00 0.00 4.26
2606 2703 5.880332 CCCGTCTTTTCTTGGATATTCTCAA 59.120 40.000 0.00 0.00 0.00 3.02
2659 2789 3.013219 GGATCTGCCCTGTCTTTTCTTC 58.987 50.000 0.00 0.00 0.00 2.87
2708 2838 0.320421 TTCTTGGACTTTCTCCGGCG 60.320 55.000 0.00 0.00 43.03 6.46
2802 2932 5.754890 ACTTTGTTTCAACTTGCATTGGATC 59.245 36.000 0.38 0.00 0.00 3.36
2833 2963 4.676196 GCTGGCCTCAAGAATAATTGTGTG 60.676 45.833 3.32 0.00 0.00 3.82
2901 3031 2.615493 GGTGGTGGTACCTCATGACTTG 60.615 54.545 14.36 0.00 39.58 3.16
2917 3047 3.910627 ACCAGAAGAGTAAGATTGGTGGT 59.089 43.478 0.00 0.00 37.52 4.16
2918 3048 4.559862 ACCAGAAGAGTAAGATTGGTGG 57.440 45.455 0.00 0.00 37.52 4.61
3001 3131 5.677319 TGAATTCCTAGGTCTTACTGGTG 57.323 43.478 9.08 0.00 0.00 4.17
3106 3236 2.872245 TCGTTCAGGCTTCAGAGTTTTG 59.128 45.455 0.00 0.00 0.00 2.44
3107 3237 2.872858 GTCGTTCAGGCTTCAGAGTTTT 59.127 45.455 0.00 0.00 0.00 2.43
3119 3249 1.217882 GGACTGTGTTGTCGTTCAGG 58.782 55.000 0.00 0.00 37.81 3.86
3222 3352 3.624410 TCCACATGATTTGATCTGAAGCG 59.376 43.478 0.00 0.00 0.00 4.68
3276 3406 8.353423 ACAACAATCTATTTCAACTAAGGCAT 57.647 30.769 0.00 0.00 0.00 4.40
3277 3407 7.759489 ACAACAATCTATTTCAACTAAGGCA 57.241 32.000 0.00 0.00 0.00 4.75
3358 3488 2.307496 TCAATCAATGGGGCACTTGT 57.693 45.000 0.00 0.00 0.00 3.16
3370 3500 8.233868 CGTCCTGTTTACATACAAATCAATCAA 58.766 33.333 0.00 0.00 0.00 2.57
3371 3501 7.148323 CCGTCCTGTTTACATACAAATCAATCA 60.148 37.037 0.00 0.00 0.00 2.57
3372 3502 7.186804 CCGTCCTGTTTACATACAAATCAATC 58.813 38.462 0.00 0.00 0.00 2.67
3399 3529 4.782691 TCCCTCTTAACATCCACTTCATCA 59.217 41.667 0.00 0.00 0.00 3.07
3459 3589 0.729140 CGTGCGTTCCCAATCAAAGC 60.729 55.000 0.00 0.00 0.00 3.51
3460 3590 0.109781 CCGTGCGTTCCCAATCAAAG 60.110 55.000 0.00 0.00 0.00 2.77
3461 3591 1.953017 CCGTGCGTTCCCAATCAAA 59.047 52.632 0.00 0.00 0.00 2.69
3462 3592 2.622011 GCCGTGCGTTCCCAATCAA 61.622 57.895 0.00 0.00 0.00 2.57
3477 4506 3.792053 GACTAGCCACCATCCGCCG 62.792 68.421 0.00 0.00 0.00 6.46
3546 4575 6.994496 TGAATGCACCAACCAAATTCAAAATA 59.006 30.769 0.00 0.00 35.05 1.40
3609 4638 0.109597 GCAAGGACGGCAATGTTCAG 60.110 55.000 0.00 0.00 0.00 3.02
3663 4692 4.564041 AGAATGCATCGAGTCCATATGAC 58.436 43.478 3.65 0.79 44.82 3.06
3744 4778 5.046950 GCTATGAACAAACCAATAAACCCCA 60.047 40.000 0.00 0.00 0.00 4.96
3773 4807 4.717233 AGAGTGAAGAGAGCATGTACTG 57.283 45.455 0.00 0.00 0.00 2.74
3782 4816 5.083533 AGCAATACCAAGAGTGAAGAGAG 57.916 43.478 0.00 0.00 0.00 3.20
3783 4817 5.489792 AAGCAATACCAAGAGTGAAGAGA 57.510 39.130 0.00 0.00 0.00 3.10
3784 4818 6.376978 CAAAAGCAATACCAAGAGTGAAGAG 58.623 40.000 0.00 0.00 0.00 2.85
3785 4819 5.278463 GCAAAAGCAATACCAAGAGTGAAGA 60.278 40.000 0.00 0.00 0.00 2.87
3786 4820 4.919754 GCAAAAGCAATACCAAGAGTGAAG 59.080 41.667 0.00 0.00 0.00 3.02
3787 4821 4.261994 GGCAAAAGCAATACCAAGAGTGAA 60.262 41.667 0.00 0.00 0.00 3.18
3788 4822 3.255642 GGCAAAAGCAATACCAAGAGTGA 59.744 43.478 0.00 0.00 0.00 3.41
3789 4823 3.578688 GGCAAAAGCAATACCAAGAGTG 58.421 45.455 0.00 0.00 0.00 3.51
3790 4824 2.228822 CGGCAAAAGCAATACCAAGAGT 59.771 45.455 0.00 0.00 0.00 3.24
3791 4825 2.415893 CCGGCAAAAGCAATACCAAGAG 60.416 50.000 0.00 0.00 0.00 2.85
3792 4826 1.543802 CCGGCAAAAGCAATACCAAGA 59.456 47.619 0.00 0.00 0.00 3.02
3793 4827 1.994916 CCGGCAAAAGCAATACCAAG 58.005 50.000 0.00 0.00 0.00 3.61
3794 4828 0.037790 GCCGGCAAAAGCAATACCAA 60.038 50.000 24.80 0.00 0.00 3.67
3795 4829 1.589113 GCCGGCAAAAGCAATACCA 59.411 52.632 24.80 0.00 0.00 3.25
3796 4830 1.153647 GGCCGGCAAAAGCAATACC 60.154 57.895 30.85 1.22 0.00 2.73
3797 4831 0.458370 CTGGCCGGCAAAAGCAATAC 60.458 55.000 30.85 6.94 0.00 1.89
3798 4832 1.889454 CTGGCCGGCAAAAGCAATA 59.111 52.632 30.85 1.16 0.00 1.90
3799 4833 2.658422 CTGGCCGGCAAAAGCAAT 59.342 55.556 30.85 0.00 0.00 3.56
3800 4834 4.298069 GCTGGCCGGCAAAAGCAA 62.298 61.111 31.48 9.43 35.69 3.91
3802 4836 4.729856 CTGCTGGCCGGCAAAAGC 62.730 66.667 37.56 30.44 41.94 3.51
3803 4837 2.482296 CTTCTGCTGGCCGGCAAAAG 62.482 60.000 37.56 34.99 41.94 2.27
3804 4838 2.520500 TTCTGCTGGCCGGCAAAA 60.521 55.556 37.56 30.10 41.94 2.44
3805 4839 2.985282 CTTCTGCTGGCCGGCAAA 60.985 61.111 37.56 29.46 41.94 3.68
3806 4840 3.907260 CTCTTCTGCTGGCCGGCAA 62.907 63.158 37.56 24.30 41.94 4.52
3807 4841 4.399395 CTCTTCTGCTGGCCGGCA 62.399 66.667 36.33 36.33 40.15 5.69
3809 4843 1.899437 TAACCTCTTCTGCTGGCCGG 61.899 60.000 7.41 7.41 0.00 6.13
3810 4844 0.179000 ATAACCTCTTCTGCTGGCCG 59.821 55.000 0.00 0.00 0.00 6.13



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.