Multiple sequence alignment - TraesCS1A01G242000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G242000 chr1A 100.000 3195 0 0 1 3195 430190982 430187788 0.000000e+00 5901.0
1 TraesCS1A01G242000 chr1A 80.529 945 144 19 1004 1913 522189658 522190597 0.000000e+00 689.0
2 TraesCS1A01G242000 chr1A 79.087 942 151 27 1004 1913 521977626 521978553 9.800000e-170 606.0
3 TraesCS1A01G242000 chr1A 80.098 819 133 15 1120 1913 521989928 521990741 1.650000e-162 582.0
4 TraesCS1A01G242000 chr1A 93.447 351 21 2 1 351 494728499 494728151 1.310000e-143 520.0
5 TraesCS1A01G242000 chr1A 86.207 87 3 5 1945 2023 556762817 556762902 5.680000e-13 86.1
6 TraesCS1A01G242000 chr1A 85.185 81 5 6 1949 2022 119144580 119144500 3.420000e-10 76.8
7 TraesCS1A01G242000 chr1D 93.391 1271 57 8 686 1948 332413414 332412163 0.000000e+00 1857.0
8 TraesCS1A01G242000 chr1D 91.886 912 58 7 2027 2930 332412160 332411257 0.000000e+00 1260.0
9 TraesCS1A01G242000 chr1D 80.127 946 146 22 1004 1913 427039110 427040049 0.000000e+00 667.0
10 TraesCS1A01G242000 chr1D 79.851 938 151 17 1004 1913 426978317 426979244 0.000000e+00 651.0
11 TraesCS1A01G242000 chr1D 93.868 212 13 0 2984 3195 332410887 332410676 1.430000e-83 320.0
12 TraesCS1A01G242000 chr1D 84.753 223 7 6 362 565 332413685 332413471 6.990000e-47 198.0
13 TraesCS1A01G242000 chr1D 92.857 56 2 2 1981 2036 454810981 454810928 2.640000e-11 80.5
14 TraesCS1A01G242000 chr1B 91.894 1172 77 8 2027 3191 447173725 447172565 0.000000e+00 1622.0
15 TraesCS1A01G242000 chr1B 93.087 1027 60 5 929 1948 447174750 447173728 0.000000e+00 1493.0
16 TraesCS1A01G242000 chr1B 79.082 937 160 19 1004 1913 576921362 576922289 2.110000e-171 612.0
17 TraesCS1A01G242000 chr1B 78.998 938 159 23 1004 1913 577036834 577037761 9.800000e-170 606.0
18 TraesCS1A01G242000 chr1B 80.924 498 74 9 1150 1626 577206807 577207304 1.080000e-99 374.0
19 TraesCS1A01G242000 chr1B 87.387 222 9 14 350 565 447175991 447175783 1.480000e-58 237.0
20 TraesCS1A01G242000 chr1B 97.531 81 2 0 576 656 409673975 409673895 4.300000e-29 139.0
21 TraesCS1A01G242000 chr5A 97.143 350 10 0 1 350 30652466 30652117 2.740000e-165 592.0
22 TraesCS1A01G242000 chr5A 97.468 79 2 0 576 654 708080928 708080850 5.560000e-28 135.0
23 TraesCS1A01G242000 chr5A 83.810 105 7 7 1944 2040 477706695 477706797 1.220000e-14 91.6
24 TraesCS1A01G242000 chr5B 94.602 352 16 2 1 350 15254434 15254784 2.800000e-150 542.0
25 TraesCS1A01G242000 chr5B 93.429 350 22 1 1 350 533015493 533015841 4.720000e-143 518.0
26 TraesCS1A01G242000 chr5B 97.531 81 2 0 576 656 664878724 664878804 4.300000e-29 139.0
27 TraesCS1A01G242000 chr2B 91.643 347 27 2 1 346 728608776 728609121 2.230000e-131 479.0
28 TraesCS1A01G242000 chr2B 98.750 80 1 0 576 655 682861994 682862073 3.320000e-30 143.0
29 TraesCS1A01G242000 chrUn 79.009 686 111 18 1004 1665 371289726 371289050 3.780000e-119 438.0
30 TraesCS1A01G242000 chrUn 82.653 98 7 6 1945 2034 15908443 15908538 9.500000e-11 78.7
31 TraesCS1A01G242000 chr7B 85.816 282 30 5 1 282 704894041 704893770 1.120000e-74 291.0
32 TraesCS1A01G242000 chr7B 97.468 79 2 0 576 654 97964072 97964150 5.560000e-28 135.0
33 TraesCS1A01G242000 chr3A 97.500 80 2 0 576 655 627707010 627707089 1.550000e-28 137.0
34 TraesCS1A01G242000 chr2A 97.500 80 2 0 576 655 45092539 45092460 1.550000e-28 137.0
35 TraesCS1A01G242000 chr4A 97.468 79 2 0 576 654 638676807 638676885 5.560000e-28 135.0
36 TraesCS1A01G242000 chr4B 96.203 79 3 0 576 654 582571738 582571816 2.590000e-26 130.0
37 TraesCS1A01G242000 chr4B 83.333 90 6 5 1945 2026 646745163 646745075 1.230000e-09 75.0
38 TraesCS1A01G242000 chr4D 83.505 97 6 6 1934 2022 35665576 35665482 7.350000e-12 82.4
39 TraesCS1A01G242000 chr4D 85.897 78 7 2 1945 2022 69687443 69687370 2.640000e-11 80.5
40 TraesCS1A01G242000 chr7A 92.453 53 1 1 1975 2024 516498098 516498046 4.420000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G242000 chr1A 430187788 430190982 3194 True 5901.000000 5901 100.000000 1 3195 1 chr1A.!!$R2 3194
1 TraesCS1A01G242000 chr1A 522189658 522190597 939 False 689.000000 689 80.529000 1004 1913 1 chr1A.!!$F3 909
2 TraesCS1A01G242000 chr1A 521977626 521978553 927 False 606.000000 606 79.087000 1004 1913 1 chr1A.!!$F1 909
3 TraesCS1A01G242000 chr1A 521989928 521990741 813 False 582.000000 582 80.098000 1120 1913 1 chr1A.!!$F2 793
4 TraesCS1A01G242000 chr1D 332410676 332413685 3009 True 908.750000 1857 90.974500 362 3195 4 chr1D.!!$R2 2833
5 TraesCS1A01G242000 chr1D 427039110 427040049 939 False 667.000000 667 80.127000 1004 1913 1 chr1D.!!$F2 909
6 TraesCS1A01G242000 chr1D 426978317 426979244 927 False 651.000000 651 79.851000 1004 1913 1 chr1D.!!$F1 909
7 TraesCS1A01G242000 chr1B 447172565 447175991 3426 True 1117.333333 1622 90.789333 350 3191 3 chr1B.!!$R2 2841
8 TraesCS1A01G242000 chr1B 576921362 576922289 927 False 612.000000 612 79.082000 1004 1913 1 chr1B.!!$F1 909
9 TraesCS1A01G242000 chr1B 577036834 577037761 927 False 606.000000 606 78.998000 1004 1913 1 chr1B.!!$F2 909
10 TraesCS1A01G242000 chrUn 371289050 371289726 676 True 438.000000 438 79.009000 1004 1665 1 chrUn.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.034337 GCCATAGCCGGGATTTACGA 59.966 55.0 2.18 0.00 0.0 3.43 F
321 322 0.036765 GTGGATTGAGCACCGGTACA 60.037 55.0 6.87 5.38 0.0 2.90 F
1044 1854 0.172578 TCGATTCTACCGTGGCAGTG 59.827 55.0 0.00 0.00 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 2486 1.410517 TCGGTGAGCTCCTTCATCATC 59.589 52.381 12.15 0.00 0.00 2.92 R
2098 2966 0.107066 TCGTGTCCGTGCCTCCTATA 60.107 55.000 0.00 0.00 35.01 1.31 R
2883 3758 0.179936 GTCTCCAATGAGCTCCCCTG 59.820 60.000 12.15 5.56 38.58 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.096003 CCCCGTGGTAGGTGCCTG 62.096 72.222 0.12 0.00 0.00 4.85
18 19 4.778143 CCCGTGGTAGGTGCCTGC 62.778 72.222 0.12 0.00 0.00 4.85
21 22 4.016706 GTGGTAGGTGCCTGCGGT 62.017 66.667 0.12 0.00 0.00 5.68
22 23 4.015406 TGGTAGGTGCCTGCGGTG 62.015 66.667 0.12 0.00 0.00 4.94
23 24 4.778143 GGTAGGTGCCTGCGGTGG 62.778 72.222 0.12 0.00 0.00 4.61
24 25 3.702048 GTAGGTGCCTGCGGTGGA 61.702 66.667 0.12 0.00 0.00 4.02
25 26 2.925706 TAGGTGCCTGCGGTGGAA 60.926 61.111 0.12 0.00 0.00 3.53
26 27 3.248446 TAGGTGCCTGCGGTGGAAC 62.248 63.158 0.12 0.00 34.85 3.62
37 38 4.637771 GTGGAACCCTGAATCCGG 57.362 61.111 0.00 0.00 38.63 5.14
38 39 1.683441 GTGGAACCCTGAATCCGGT 59.317 57.895 0.00 0.00 38.63 5.28
39 40 0.676782 GTGGAACCCTGAATCCGGTG 60.677 60.000 0.00 0.00 38.63 4.94
40 41 1.749258 GGAACCCTGAATCCGGTGC 60.749 63.158 0.00 0.00 30.96 5.01
41 42 1.749258 GAACCCTGAATCCGGTGCC 60.749 63.158 0.00 0.00 30.96 5.01
42 43 3.622060 AACCCTGAATCCGGTGCCG 62.622 63.158 0.00 3.25 39.44 5.69
52 53 3.803082 CGGTGCCGGATGTTGCTG 61.803 66.667 5.05 0.00 35.56 4.41
53 54 3.443045 GGTGCCGGATGTTGCTGG 61.443 66.667 5.05 0.00 37.37 4.85
54 55 2.359850 GTGCCGGATGTTGCTGGA 60.360 61.111 5.05 0.00 36.35 3.86
55 56 2.046023 TGCCGGATGTTGCTGGAG 60.046 61.111 5.05 0.00 36.35 3.86
56 57 2.268920 GCCGGATGTTGCTGGAGA 59.731 61.111 5.05 0.00 36.35 3.71
57 58 1.377202 GCCGGATGTTGCTGGAGAA 60.377 57.895 5.05 0.00 36.35 2.87
58 59 1.372087 GCCGGATGTTGCTGGAGAAG 61.372 60.000 5.05 0.00 36.35 2.85
59 60 0.745845 CCGGATGTTGCTGGAGAAGG 60.746 60.000 0.00 0.00 36.35 3.46
60 61 1.372087 CGGATGTTGCTGGAGAAGGC 61.372 60.000 0.00 0.00 0.00 4.35
61 62 1.372087 GGATGTTGCTGGAGAAGGCG 61.372 60.000 0.00 0.00 0.00 5.52
62 63 1.372087 GATGTTGCTGGAGAAGGCGG 61.372 60.000 0.00 0.00 0.00 6.13
63 64 1.841302 ATGTTGCTGGAGAAGGCGGA 61.841 55.000 0.00 0.00 0.00 5.54
64 65 1.078143 GTTGCTGGAGAAGGCGGAT 60.078 57.895 0.00 0.00 0.00 4.18
65 66 1.092345 GTTGCTGGAGAAGGCGGATC 61.092 60.000 0.00 0.00 0.00 3.36
66 67 1.267574 TTGCTGGAGAAGGCGGATCT 61.268 55.000 0.00 0.00 0.00 2.75
67 68 1.068921 GCTGGAGAAGGCGGATCTC 59.931 63.158 8.81 8.81 42.09 2.75
68 69 1.361993 CTGGAGAAGGCGGATCTCG 59.638 63.158 10.44 0.00 43.43 4.04
79 80 4.357947 GATCTCGCGGCGGCCATA 62.358 66.667 23.46 0.96 35.02 2.74
80 81 4.363990 ATCTCGCGGCGGCCATAG 62.364 66.667 23.46 12.07 35.02 2.23
92 93 2.540145 GCCATAGCCGGGATTTACG 58.460 57.895 2.18 0.00 0.00 3.18
93 94 0.034337 GCCATAGCCGGGATTTACGA 59.966 55.000 2.18 0.00 0.00 3.43
94 95 1.792006 CCATAGCCGGGATTTACGAC 58.208 55.000 2.18 0.00 0.00 4.34
95 96 1.415374 CATAGCCGGGATTTACGACG 58.585 55.000 2.18 0.00 0.00 5.12
99 100 4.008035 CGGGATTTACGACGGAGC 57.992 61.111 0.00 0.00 0.00 4.70
100 101 1.590792 CGGGATTTACGACGGAGCC 60.591 63.158 0.00 0.00 0.00 4.70
101 102 1.227468 GGGATTTACGACGGAGCCC 60.227 63.158 0.00 2.60 0.00 5.19
102 103 1.227468 GGATTTACGACGGAGCCCC 60.227 63.158 0.00 0.00 0.00 5.80
103 104 1.518774 GATTTACGACGGAGCCCCA 59.481 57.895 0.00 0.00 0.00 4.96
104 105 0.106149 GATTTACGACGGAGCCCCAT 59.894 55.000 0.00 0.00 0.00 4.00
105 106 0.179056 ATTTACGACGGAGCCCCATG 60.179 55.000 0.00 0.00 0.00 3.66
106 107 1.259142 TTTACGACGGAGCCCCATGA 61.259 55.000 0.00 0.00 0.00 3.07
107 108 1.259142 TTACGACGGAGCCCCATGAA 61.259 55.000 0.00 0.00 0.00 2.57
108 109 1.259142 TACGACGGAGCCCCATGAAA 61.259 55.000 0.00 0.00 0.00 2.69
109 110 2.106683 CGACGGAGCCCCATGAAAC 61.107 63.158 0.00 0.00 0.00 2.78
110 111 2.046314 ACGGAGCCCCATGAAACG 60.046 61.111 0.00 0.00 0.00 3.60
111 112 2.267642 CGGAGCCCCATGAAACGA 59.732 61.111 0.00 0.00 0.00 3.85
112 113 1.376683 CGGAGCCCCATGAAACGAA 60.377 57.895 0.00 0.00 0.00 3.85
113 114 1.644786 CGGAGCCCCATGAAACGAAC 61.645 60.000 0.00 0.00 0.00 3.95
114 115 0.322546 GGAGCCCCATGAAACGAACT 60.323 55.000 0.00 0.00 0.00 3.01
115 116 0.804989 GAGCCCCATGAAACGAACTG 59.195 55.000 0.00 0.00 0.00 3.16
116 117 0.400213 AGCCCCATGAAACGAACTGA 59.600 50.000 0.00 0.00 0.00 3.41
117 118 0.521735 GCCCCATGAAACGAACTGAC 59.478 55.000 0.00 0.00 0.00 3.51
118 119 1.890876 CCCCATGAAACGAACTGACA 58.109 50.000 0.00 0.00 0.00 3.58
119 120 2.226330 CCCCATGAAACGAACTGACAA 58.774 47.619 0.00 0.00 0.00 3.18
120 121 2.226437 CCCCATGAAACGAACTGACAAG 59.774 50.000 0.00 0.00 0.00 3.16
121 122 3.138304 CCCATGAAACGAACTGACAAGA 58.862 45.455 0.00 0.00 0.00 3.02
122 123 3.187227 CCCATGAAACGAACTGACAAGAG 59.813 47.826 0.00 0.00 0.00 2.85
123 124 4.058124 CCATGAAACGAACTGACAAGAGA 58.942 43.478 0.00 0.00 0.00 3.10
124 125 4.692625 CCATGAAACGAACTGACAAGAGAT 59.307 41.667 0.00 0.00 0.00 2.75
125 126 5.390251 CCATGAAACGAACTGACAAGAGATG 60.390 44.000 0.00 0.00 0.00 2.90
126 127 4.058124 TGAAACGAACTGACAAGAGATGG 58.942 43.478 0.00 0.00 0.00 3.51
127 128 2.751166 ACGAACTGACAAGAGATGGG 57.249 50.000 0.00 0.00 0.00 4.00
128 129 1.276421 ACGAACTGACAAGAGATGGGG 59.724 52.381 0.00 0.00 0.00 4.96
129 130 1.276421 CGAACTGACAAGAGATGGGGT 59.724 52.381 0.00 0.00 0.00 4.95
130 131 2.704572 GAACTGACAAGAGATGGGGTG 58.295 52.381 0.00 0.00 0.00 4.61
131 132 0.987294 ACTGACAAGAGATGGGGTGG 59.013 55.000 0.00 0.00 0.00 4.61
132 133 0.254178 CTGACAAGAGATGGGGTGGG 59.746 60.000 0.00 0.00 0.00 4.61
133 134 1.207488 TGACAAGAGATGGGGTGGGG 61.207 60.000 0.00 0.00 0.00 4.96
134 135 0.914417 GACAAGAGATGGGGTGGGGA 60.914 60.000 0.00 0.00 0.00 4.81
135 136 0.916358 ACAAGAGATGGGGTGGGGAG 60.916 60.000 0.00 0.00 0.00 4.30
136 137 0.621571 CAAGAGATGGGGTGGGGAGA 60.622 60.000 0.00 0.00 0.00 3.71
137 138 0.121197 AAGAGATGGGGTGGGGAGAA 59.879 55.000 0.00 0.00 0.00 2.87
138 139 0.121197 AGAGATGGGGTGGGGAGAAA 59.879 55.000 0.00 0.00 0.00 2.52
139 140 0.548510 GAGATGGGGTGGGGAGAAAG 59.451 60.000 0.00 0.00 0.00 2.62
140 141 0.921256 AGATGGGGTGGGGAGAAAGG 60.921 60.000 0.00 0.00 0.00 3.11
141 142 0.919289 GATGGGGTGGGGAGAAAGGA 60.919 60.000 0.00 0.00 0.00 3.36
142 143 0.921256 ATGGGGTGGGGAGAAAGGAG 60.921 60.000 0.00 0.00 0.00 3.69
143 144 1.229853 GGGGTGGGGAGAAAGGAGA 60.230 63.158 0.00 0.00 0.00 3.71
144 145 0.624795 GGGGTGGGGAGAAAGGAGAT 60.625 60.000 0.00 0.00 0.00 2.75
145 146 0.840617 GGGTGGGGAGAAAGGAGATC 59.159 60.000 0.00 0.00 0.00 2.75
146 147 0.466124 GGTGGGGAGAAAGGAGATCG 59.534 60.000 0.00 0.00 0.00 3.69
147 148 1.486211 GTGGGGAGAAAGGAGATCGA 58.514 55.000 0.00 0.00 0.00 3.59
148 149 2.043227 GTGGGGAGAAAGGAGATCGAT 58.957 52.381 0.00 0.00 0.00 3.59
149 150 2.042464 TGGGGAGAAAGGAGATCGATG 58.958 52.381 0.54 0.00 0.00 3.84
150 151 1.270571 GGGGAGAAAGGAGATCGATGC 60.271 57.143 0.54 0.00 0.00 3.91
151 152 1.604185 GGGAGAAAGGAGATCGATGCG 60.604 57.143 0.54 0.00 0.00 4.73
152 153 1.604185 GGAGAAAGGAGATCGATGCGG 60.604 57.143 0.54 0.00 0.00 5.69
153 154 0.390860 AGAAAGGAGATCGATGCGGG 59.609 55.000 0.54 0.00 0.00 6.13
154 155 0.389391 GAAAGGAGATCGATGCGGGA 59.611 55.000 0.54 0.00 0.00 5.14
155 156 0.830648 AAAGGAGATCGATGCGGGAA 59.169 50.000 0.54 0.00 0.00 3.97
156 157 0.390860 AAGGAGATCGATGCGGGAAG 59.609 55.000 0.54 0.00 0.00 3.46
157 158 1.005630 GGAGATCGATGCGGGAAGG 60.006 63.158 0.54 0.00 0.00 3.46
158 159 1.464376 GGAGATCGATGCGGGAAGGA 61.464 60.000 0.54 0.00 0.00 3.36
159 160 0.038709 GAGATCGATGCGGGAAGGAG 60.039 60.000 0.54 0.00 0.00 3.69
160 161 0.468214 AGATCGATGCGGGAAGGAGA 60.468 55.000 0.54 0.00 0.00 3.71
161 162 0.319125 GATCGATGCGGGAAGGAGAC 60.319 60.000 0.54 0.00 0.00 3.36
162 163 1.043116 ATCGATGCGGGAAGGAGACA 61.043 55.000 0.00 0.00 0.00 3.41
163 164 1.227089 CGATGCGGGAAGGAGACAG 60.227 63.158 0.00 0.00 0.00 3.51
164 165 1.522580 GATGCGGGAAGGAGACAGC 60.523 63.158 0.00 0.00 0.00 4.40
165 166 3.376935 ATGCGGGAAGGAGACAGCG 62.377 63.158 0.00 0.00 0.00 5.18
166 167 4.821589 GCGGGAAGGAGACAGCGG 62.822 72.222 0.00 0.00 0.00 5.52
167 168 4.821589 CGGGAAGGAGACAGCGGC 62.822 72.222 0.00 0.00 0.00 6.53
168 169 4.821589 GGGAAGGAGACAGCGGCG 62.822 72.222 0.51 0.51 0.00 6.46
169 170 4.070552 GGAAGGAGACAGCGGCGT 62.071 66.667 9.37 0.00 0.00 5.68
170 171 2.811317 GAAGGAGACAGCGGCGTG 60.811 66.667 9.37 8.36 0.00 5.34
171 172 4.379243 AAGGAGACAGCGGCGTGG 62.379 66.667 9.37 3.23 0.00 4.94
179 180 3.395702 AGCGGCGTGGGGTTGATA 61.396 61.111 9.37 0.00 0.00 2.15
180 181 2.203153 GCGGCGTGGGGTTGATAT 60.203 61.111 9.37 0.00 0.00 1.63
181 182 2.251642 GCGGCGTGGGGTTGATATC 61.252 63.158 9.37 0.00 0.00 1.63
182 183 1.597027 CGGCGTGGGGTTGATATCC 60.597 63.158 0.00 0.00 0.00 2.59
183 184 1.837090 GGCGTGGGGTTGATATCCT 59.163 57.895 0.00 0.00 0.00 3.24
184 185 0.250338 GGCGTGGGGTTGATATCCTC 60.250 60.000 0.00 0.00 0.00 3.71
185 186 0.759346 GCGTGGGGTTGATATCCTCT 59.241 55.000 0.00 0.00 0.00 3.69
186 187 1.270358 GCGTGGGGTTGATATCCTCTC 60.270 57.143 0.00 0.00 0.00 3.20
187 188 2.320781 CGTGGGGTTGATATCCTCTCT 58.679 52.381 0.00 0.00 0.00 3.10
188 189 2.700897 CGTGGGGTTGATATCCTCTCTT 59.299 50.000 0.00 0.00 0.00 2.85
189 190 3.134804 CGTGGGGTTGATATCCTCTCTTT 59.865 47.826 0.00 0.00 0.00 2.52
190 191 4.709250 GTGGGGTTGATATCCTCTCTTTC 58.291 47.826 0.00 0.00 0.00 2.62
191 192 3.388024 TGGGGTTGATATCCTCTCTTTCG 59.612 47.826 0.00 0.00 0.00 3.46
192 193 3.388350 GGGGTTGATATCCTCTCTTTCGT 59.612 47.826 0.00 0.00 0.00 3.85
193 194 4.372656 GGGTTGATATCCTCTCTTTCGTG 58.627 47.826 0.00 0.00 0.00 4.35
194 195 4.372656 GGTTGATATCCTCTCTTTCGTGG 58.627 47.826 0.00 0.00 0.00 4.94
195 196 4.372656 GTTGATATCCTCTCTTTCGTGGG 58.627 47.826 0.00 0.00 0.00 4.61
196 197 2.965831 TGATATCCTCTCTTTCGTGGGG 59.034 50.000 0.00 0.00 0.00 4.96
197 198 1.120530 TATCCTCTCTTTCGTGGGGC 58.879 55.000 0.00 0.00 0.00 5.80
198 199 1.627297 ATCCTCTCTTTCGTGGGGCC 61.627 60.000 0.00 0.00 0.00 5.80
199 200 2.269241 CTCTCTTTCGTGGGGCCC 59.731 66.667 18.17 18.17 0.00 5.80
200 201 2.528127 TCTCTTTCGTGGGGCCCA 60.528 61.111 24.76 24.76 0.00 5.36
201 202 1.915078 CTCTCTTTCGTGGGGCCCAT 61.915 60.000 31.48 0.00 35.28 4.00
202 203 1.452108 CTCTTTCGTGGGGCCCATC 60.452 63.158 31.48 20.76 35.28 3.51
203 204 2.196997 CTCTTTCGTGGGGCCCATCA 62.197 60.000 31.48 16.00 35.28 3.07
204 205 2.034999 TTTCGTGGGGCCCATCAC 59.965 61.111 31.48 22.03 35.28 3.06
208 209 2.915869 GTGGGGCCCATCACGTAT 59.084 61.111 31.48 0.00 35.28 3.06
209 210 1.226262 GTGGGGCCCATCACGTATT 59.774 57.895 31.48 0.00 35.28 1.89
210 211 0.395173 GTGGGGCCCATCACGTATTT 60.395 55.000 31.48 0.00 35.28 1.40
211 212 0.395036 TGGGGCCCATCACGTATTTG 60.395 55.000 24.76 0.00 0.00 2.32
212 213 1.733526 GGGCCCATCACGTATTTGC 59.266 57.895 19.95 0.00 0.00 3.68
213 214 1.034838 GGGCCCATCACGTATTTGCA 61.035 55.000 19.95 0.00 0.00 4.08
214 215 0.381801 GGCCCATCACGTATTTGCAG 59.618 55.000 0.00 0.00 0.00 4.41
215 216 1.094785 GCCCATCACGTATTTGCAGT 58.905 50.000 0.00 0.00 0.00 4.40
216 217 1.472480 GCCCATCACGTATTTGCAGTT 59.528 47.619 0.00 0.00 0.00 3.16
217 218 2.731968 GCCCATCACGTATTTGCAGTTG 60.732 50.000 0.00 0.00 0.00 3.16
218 219 2.487762 CCCATCACGTATTTGCAGTTGT 59.512 45.455 0.00 0.00 0.00 3.32
219 220 3.687212 CCCATCACGTATTTGCAGTTGTA 59.313 43.478 0.00 0.00 0.00 2.41
220 221 4.335315 CCCATCACGTATTTGCAGTTGTAT 59.665 41.667 0.00 0.00 0.00 2.29
221 222 5.525745 CCCATCACGTATTTGCAGTTGTATA 59.474 40.000 0.00 0.00 0.00 1.47
222 223 6.418956 CCATCACGTATTTGCAGTTGTATAC 58.581 40.000 0.00 0.00 0.00 1.47
223 224 6.036626 CCATCACGTATTTGCAGTTGTATACA 59.963 38.462 0.08 0.08 0.00 2.29
224 225 6.641176 TCACGTATTTGCAGTTGTATACAG 57.359 37.500 5.56 0.00 0.00 2.74
225 226 5.062934 TCACGTATTTGCAGTTGTATACAGC 59.937 40.000 11.45 11.45 39.52 4.40
226 227 5.063438 CACGTATTTGCAGTTGTATACAGCT 59.937 40.000 15.74 15.74 39.76 4.24
227 228 5.642063 ACGTATTTGCAGTTGTATACAGCTT 59.358 36.000 18.50 7.64 39.76 3.74
228 229 5.959527 CGTATTTGCAGTTGTATACAGCTTG 59.040 40.000 18.50 14.59 39.76 4.01
229 230 5.964958 ATTTGCAGTTGTATACAGCTTGT 57.035 34.783 18.50 0.00 39.76 3.16
230 231 7.201487 CGTATTTGCAGTTGTATACAGCTTGTA 60.201 37.037 18.50 11.30 39.76 2.41
231 232 7.630242 ATTTGCAGTTGTATACAGCTTGTAT 57.370 32.000 18.50 8.11 44.89 2.29
232 233 6.662414 TTGCAGTTGTATACAGCTTGTATC 57.338 37.500 18.50 7.38 42.16 2.24
233 234 5.116180 TGCAGTTGTATACAGCTTGTATCC 58.884 41.667 18.50 5.30 42.16 2.59
234 235 5.104941 TGCAGTTGTATACAGCTTGTATCCT 60.105 40.000 18.50 0.00 42.16 3.24
235 236 5.235186 GCAGTTGTATACAGCTTGTATCCTG 59.765 44.000 18.50 7.96 42.16 3.86
236 237 5.755375 CAGTTGTATACAGCTTGTATCCTGG 59.245 44.000 18.50 2.12 42.16 4.45
237 238 5.661312 AGTTGTATACAGCTTGTATCCTGGA 59.339 40.000 15.74 0.00 42.16 3.86
238 239 6.156256 AGTTGTATACAGCTTGTATCCTGGAA 59.844 38.462 15.74 0.00 42.16 3.53
239 240 6.747414 TGTATACAGCTTGTATCCTGGAAT 57.253 37.500 0.00 0.00 42.16 3.01
240 241 6.759272 TGTATACAGCTTGTATCCTGGAATC 58.241 40.000 0.00 0.00 42.16 2.52
241 242 6.554982 TGTATACAGCTTGTATCCTGGAATCT 59.445 38.462 0.00 0.00 42.16 2.40
242 243 4.148128 ACAGCTTGTATCCTGGAATCTG 57.852 45.455 0.00 4.81 33.43 2.90
243 244 3.776969 ACAGCTTGTATCCTGGAATCTGA 59.223 43.478 0.00 0.00 33.43 3.27
244 245 4.141756 ACAGCTTGTATCCTGGAATCTGAG 60.142 45.833 0.00 0.00 33.43 3.35
245 246 3.390639 AGCTTGTATCCTGGAATCTGAGG 59.609 47.826 0.00 0.00 0.00 3.86
246 247 3.135530 GCTTGTATCCTGGAATCTGAGGT 59.864 47.826 0.00 0.00 0.00 3.85
247 248 4.701765 CTTGTATCCTGGAATCTGAGGTG 58.298 47.826 0.00 0.00 0.00 4.00
248 249 3.041211 TGTATCCTGGAATCTGAGGTGG 58.959 50.000 0.00 0.00 0.00 4.61
249 250 2.575921 ATCCTGGAATCTGAGGTGGA 57.424 50.000 0.00 0.00 0.00 4.02
250 251 2.342406 TCCTGGAATCTGAGGTGGAA 57.658 50.000 0.00 0.00 0.00 3.53
251 252 2.631384 TCCTGGAATCTGAGGTGGAAA 58.369 47.619 0.00 0.00 0.00 3.13
252 253 3.192944 TCCTGGAATCTGAGGTGGAAAT 58.807 45.455 0.00 0.00 0.00 2.17
253 254 4.370776 TCCTGGAATCTGAGGTGGAAATA 58.629 43.478 0.00 0.00 0.00 1.40
254 255 4.788075 TCCTGGAATCTGAGGTGGAAATAA 59.212 41.667 0.00 0.00 0.00 1.40
255 256 5.252863 TCCTGGAATCTGAGGTGGAAATAAA 59.747 40.000 0.00 0.00 0.00 1.40
256 257 5.951747 CCTGGAATCTGAGGTGGAAATAAAA 59.048 40.000 0.00 0.00 0.00 1.52
257 258 6.437162 CCTGGAATCTGAGGTGGAAATAAAAA 59.563 38.462 0.00 0.00 0.00 1.94
273 274 2.287977 AAAAACTAGCAGGGTCCACC 57.712 50.000 0.00 0.00 40.67 4.61
283 284 3.463585 GGTCCACCCGCACGGATA 61.464 66.667 11.42 0.00 37.50 2.59
284 285 2.803817 GGTCCACCCGCACGGATAT 61.804 63.158 11.42 0.00 37.50 1.63
285 286 1.466025 GGTCCACCCGCACGGATATA 61.466 60.000 11.42 0.00 37.50 0.86
286 287 0.038526 GTCCACCCGCACGGATATAG 60.039 60.000 11.42 0.00 37.50 1.31
287 288 0.178984 TCCACCCGCACGGATATAGA 60.179 55.000 11.42 0.00 37.50 1.98
288 289 0.677288 CCACCCGCACGGATATAGAA 59.323 55.000 11.42 0.00 37.50 2.10
289 290 1.336887 CCACCCGCACGGATATAGAAG 60.337 57.143 11.42 0.00 37.50 2.85
290 291 0.317479 ACCCGCACGGATATAGAAGC 59.683 55.000 11.42 0.00 37.50 3.86
291 292 0.317160 CCCGCACGGATATAGAAGCA 59.683 55.000 11.42 0.00 37.50 3.91
292 293 1.419374 CCGCACGGATATAGAAGCAC 58.581 55.000 2.01 0.00 37.50 4.40
293 294 1.000163 CCGCACGGATATAGAAGCACT 60.000 52.381 2.01 0.00 37.50 4.40
294 295 2.054363 CGCACGGATATAGAAGCACTG 58.946 52.381 0.00 0.00 0.00 3.66
295 296 2.287608 CGCACGGATATAGAAGCACTGA 60.288 50.000 0.00 0.00 0.00 3.41
296 297 3.312828 GCACGGATATAGAAGCACTGAG 58.687 50.000 0.00 0.00 0.00 3.35
297 298 3.858877 GCACGGATATAGAAGCACTGAGG 60.859 52.174 0.00 0.00 0.00 3.86
298 299 2.894126 ACGGATATAGAAGCACTGAGGG 59.106 50.000 0.00 0.00 0.00 4.30
299 300 3.157881 CGGATATAGAAGCACTGAGGGA 58.842 50.000 0.00 0.00 0.00 4.20
300 301 3.766591 CGGATATAGAAGCACTGAGGGAT 59.233 47.826 0.00 0.00 0.00 3.85
301 302 4.381398 CGGATATAGAAGCACTGAGGGATG 60.381 50.000 0.00 0.00 0.00 3.51
302 303 4.081198 GGATATAGAAGCACTGAGGGATGG 60.081 50.000 0.00 0.00 0.00 3.51
303 304 2.254152 TAGAAGCACTGAGGGATGGT 57.746 50.000 0.00 0.00 0.00 3.55
304 305 0.617413 AGAAGCACTGAGGGATGGTG 59.383 55.000 0.00 0.00 0.00 4.17
305 306 0.393537 GAAGCACTGAGGGATGGTGG 60.394 60.000 0.00 0.00 0.00 4.61
306 307 0.842030 AAGCACTGAGGGATGGTGGA 60.842 55.000 0.00 0.00 0.00 4.02
307 308 0.622738 AGCACTGAGGGATGGTGGAT 60.623 55.000 0.00 0.00 0.00 3.41
308 309 0.257039 GCACTGAGGGATGGTGGATT 59.743 55.000 0.00 0.00 0.00 3.01
309 310 2.020694 GCACTGAGGGATGGTGGATTG 61.021 57.143 0.00 0.00 0.00 2.67
310 311 1.561076 CACTGAGGGATGGTGGATTGA 59.439 52.381 0.00 0.00 0.00 2.57
311 312 1.842562 ACTGAGGGATGGTGGATTGAG 59.157 52.381 0.00 0.00 0.00 3.02
312 313 0.548031 TGAGGGATGGTGGATTGAGC 59.452 55.000 0.00 0.00 0.00 4.26
313 314 0.548031 GAGGGATGGTGGATTGAGCA 59.452 55.000 0.00 0.00 0.00 4.26
314 315 0.257039 AGGGATGGTGGATTGAGCAC 59.743 55.000 0.00 0.00 0.00 4.40
315 316 0.753111 GGGATGGTGGATTGAGCACC 60.753 60.000 0.00 0.00 39.33 5.01
316 317 1.097547 GGATGGTGGATTGAGCACCG 61.098 60.000 0.00 0.00 41.64 4.94
317 318 1.077501 ATGGTGGATTGAGCACCGG 60.078 57.895 0.00 0.00 41.64 5.28
318 319 1.852157 ATGGTGGATTGAGCACCGGT 61.852 55.000 0.00 0.00 41.64 5.28
319 320 1.195442 TGGTGGATTGAGCACCGGTA 61.195 55.000 6.87 0.00 41.64 4.02
320 321 0.743345 GGTGGATTGAGCACCGGTAC 60.743 60.000 6.87 0.00 0.00 3.34
321 322 0.036765 GTGGATTGAGCACCGGTACA 60.037 55.000 6.87 5.38 0.00 2.90
322 323 0.908910 TGGATTGAGCACCGGTACAT 59.091 50.000 6.87 0.00 0.00 2.29
323 324 1.134521 TGGATTGAGCACCGGTACATC 60.135 52.381 6.87 6.33 0.00 3.06
324 325 1.583054 GATTGAGCACCGGTACATCC 58.417 55.000 6.87 0.00 0.00 3.51
325 326 0.180406 ATTGAGCACCGGTACATCCC 59.820 55.000 6.87 0.00 0.00 3.85
326 327 1.906105 TTGAGCACCGGTACATCCCC 61.906 60.000 6.87 0.00 0.00 4.81
327 328 3.441011 GAGCACCGGTACATCCCCG 62.441 68.421 6.87 0.00 45.07 5.73
329 330 3.467226 CACCGGTACATCCCCGCT 61.467 66.667 6.87 0.00 44.13 5.52
330 331 3.152400 ACCGGTACATCCCCGCTC 61.152 66.667 4.49 0.00 44.13 5.03
331 332 3.925090 CCGGTACATCCCCGCTCC 61.925 72.222 0.00 0.00 44.13 4.70
332 333 4.280494 CGGTACATCCCCGCTCCG 62.280 72.222 0.00 0.00 38.85 4.63
334 335 3.152400 GTACATCCCCGCTCCGGT 61.152 66.667 0.00 0.00 46.80 5.28
335 336 1.829533 GTACATCCCCGCTCCGGTA 60.830 63.158 0.00 0.00 46.80 4.02
336 337 1.076118 TACATCCCCGCTCCGGTAA 60.076 57.895 0.00 0.00 46.80 2.85
337 338 0.687098 TACATCCCCGCTCCGGTAAA 60.687 55.000 0.00 0.00 46.80 2.01
338 339 1.222387 CATCCCCGCTCCGGTAAAA 59.778 57.895 0.00 0.00 46.80 1.52
339 340 0.393267 CATCCCCGCTCCGGTAAAAA 60.393 55.000 0.00 0.00 46.80 1.94
408 409 1.357991 GCGCTGCTCACCTTCTCTTC 61.358 60.000 0.00 0.00 0.00 2.87
556 576 1.153309 TGCCGATGGAGAGCACATG 60.153 57.895 0.00 0.00 0.00 3.21
557 577 1.153289 GCCGATGGAGAGCACATGT 60.153 57.895 0.00 0.00 0.00 3.21
558 578 0.745845 GCCGATGGAGAGCACATGTT 60.746 55.000 0.00 0.00 0.00 2.71
559 579 1.742761 CCGATGGAGAGCACATGTTT 58.257 50.000 0.00 0.00 0.00 2.83
560 580 1.667724 CCGATGGAGAGCACATGTTTC 59.332 52.381 0.00 0.00 0.00 2.78
561 581 2.349590 CGATGGAGAGCACATGTTTCA 58.650 47.619 0.00 0.00 0.00 2.69
562 582 2.094894 CGATGGAGAGCACATGTTTCAC 59.905 50.000 0.00 0.00 0.00 3.18
563 583 1.511850 TGGAGAGCACATGTTTCACG 58.488 50.000 0.00 0.00 0.00 4.35
564 584 0.798776 GGAGAGCACATGTTTCACGG 59.201 55.000 0.00 0.00 0.00 4.94
565 585 0.798776 GAGAGCACATGTTTCACGGG 59.201 55.000 0.00 0.00 0.00 5.28
566 586 0.606401 AGAGCACATGTTTCACGGGG 60.606 55.000 0.00 0.00 0.00 5.73
567 587 0.605319 GAGCACATGTTTCACGGGGA 60.605 55.000 0.00 0.00 0.00 4.81
568 588 0.606401 AGCACATGTTTCACGGGGAG 60.606 55.000 0.00 0.00 0.00 4.30
569 589 1.875963 CACATGTTTCACGGGGAGC 59.124 57.895 0.00 0.00 0.00 4.70
570 590 0.606401 CACATGTTTCACGGGGAGCT 60.606 55.000 0.00 0.00 0.00 4.09
571 591 0.606401 ACATGTTTCACGGGGAGCTG 60.606 55.000 0.00 0.00 0.00 4.24
572 592 1.002134 ATGTTTCACGGGGAGCTGG 60.002 57.895 0.00 0.00 0.00 4.85
573 593 1.488705 ATGTTTCACGGGGAGCTGGA 61.489 55.000 0.00 0.00 0.00 3.86
574 594 1.299976 GTTTCACGGGGAGCTGGAT 59.700 57.895 0.00 0.00 0.00 3.41
575 595 0.744771 GTTTCACGGGGAGCTGGATC 60.745 60.000 0.00 0.00 0.00 3.36
576 596 1.910580 TTTCACGGGGAGCTGGATCC 61.911 60.000 4.20 4.20 38.76 3.36
582 602 3.893324 GGAGCTGGATCCCCTACC 58.107 66.667 9.90 4.36 32.79 3.18
583 603 2.210711 GGAGCTGGATCCCCTACCG 61.211 68.421 9.90 0.00 32.79 4.02
584 604 1.457831 GAGCTGGATCCCCTACCGT 60.458 63.158 9.90 0.00 0.00 4.83
585 605 1.003051 AGCTGGATCCCCTACCGTT 59.997 57.895 9.90 0.00 0.00 4.44
586 606 1.146263 GCTGGATCCCCTACCGTTG 59.854 63.158 9.90 0.00 0.00 4.10
587 607 1.830145 CTGGATCCCCTACCGTTGG 59.170 63.158 9.90 0.00 0.00 3.77
588 608 1.691337 TGGATCCCCTACCGTTGGG 60.691 63.158 9.90 10.88 44.19 4.12
589 609 2.509422 GATCCCCTACCGTTGGGC 59.491 66.667 12.27 0.00 43.26 5.36
590 610 2.042261 ATCCCCTACCGTTGGGCT 59.958 61.111 12.27 0.00 43.26 5.19
591 611 2.325393 GATCCCCTACCGTTGGGCTG 62.325 65.000 12.27 0.72 43.26 4.85
592 612 4.796495 CCCCTACCGTTGGGCTGC 62.796 72.222 12.27 0.00 43.26 5.25
593 613 3.717294 CCCTACCGTTGGGCTGCT 61.717 66.667 5.01 0.00 37.99 4.24
594 614 2.436646 CCTACCGTTGGGCTGCTG 60.437 66.667 0.00 0.00 36.48 4.41
595 615 2.662596 CTACCGTTGGGCTGCTGA 59.337 61.111 0.00 0.00 36.48 4.26
596 616 1.741770 CTACCGTTGGGCTGCTGAC 60.742 63.158 0.00 0.00 36.48 3.51
597 617 3.583276 TACCGTTGGGCTGCTGACG 62.583 63.158 13.18 13.18 36.48 4.35
600 620 4.643387 GTTGGGCTGCTGACGGGT 62.643 66.667 0.00 0.00 0.00 5.28
601 621 4.641645 TTGGGCTGCTGACGGGTG 62.642 66.667 0.00 0.00 0.00 4.61
606 626 4.394712 CTGCTGACGGGTGGGTCC 62.395 72.222 0.00 0.00 36.07 4.46
631 651 2.972505 CACGTCAGTGTGTGGGCC 60.973 66.667 0.00 0.00 43.15 5.80
632 652 4.602259 ACGTCAGTGTGTGGGCCG 62.602 66.667 0.00 0.00 0.00 6.13
633 653 4.602259 CGTCAGTGTGTGGGCCGT 62.602 66.667 0.00 0.00 0.00 5.68
634 654 2.738480 GTCAGTGTGTGGGCCGTA 59.262 61.111 0.00 0.00 0.00 4.02
635 655 1.666872 GTCAGTGTGTGGGCCGTAC 60.667 63.158 0.00 0.29 0.00 3.67
636 656 2.736995 CAGTGTGTGGGCCGTACG 60.737 66.667 8.69 8.69 0.00 3.67
637 657 3.228759 AGTGTGTGGGCCGTACGT 61.229 61.111 15.21 0.00 0.00 3.57
638 658 2.735857 GTGTGTGGGCCGTACGTC 60.736 66.667 15.21 0.00 0.00 4.34
639 659 3.225061 TGTGTGGGCCGTACGTCA 61.225 61.111 15.21 6.80 0.00 4.35
640 660 2.431942 GTGTGGGCCGTACGTCAG 60.432 66.667 15.21 0.00 0.00 3.51
641 661 2.598099 TGTGGGCCGTACGTCAGA 60.598 61.111 15.21 5.46 0.00 3.27
642 662 2.126189 GTGGGCCGTACGTCAGAC 60.126 66.667 15.21 0.25 0.00 3.51
644 664 3.434319 GGGCCGTACGTCAGACGA 61.434 66.667 29.53 10.29 46.05 4.20
645 665 2.099831 GGCCGTACGTCAGACGAG 59.900 66.667 29.53 18.07 46.05 4.18
646 666 2.576317 GCCGTACGTCAGACGAGC 60.576 66.667 29.53 20.07 46.05 5.03
647 667 2.099831 CCGTACGTCAGACGAGCC 59.900 66.667 29.53 14.28 46.05 4.70
648 668 2.276493 CGTACGTCAGACGAGCCG 60.276 66.667 29.53 21.16 46.05 5.52
649 669 2.576317 GTACGTCAGACGAGCCGC 60.576 66.667 29.53 10.01 46.05 6.53
650 670 4.156622 TACGTCAGACGAGCCGCG 62.157 66.667 29.53 0.00 46.05 6.46
673 693 2.829206 TTTCACGGCCGTGCAACAG 61.829 57.895 45.55 26.77 45.04 3.16
773 835 4.200851 CGTGCGCGACTCTGCATG 62.201 66.667 16.08 0.00 43.96 4.06
774 836 4.511443 GTGCGCGACTCTGCATGC 62.511 66.667 12.10 11.82 43.96 4.06
791 853 4.529219 CGGCATGCCACTCCGCTA 62.529 66.667 34.93 0.00 36.53 4.26
803 865 1.455959 TCCGCTAGCTCCTTCCTCC 60.456 63.158 13.93 0.00 0.00 4.30
895 961 2.158004 CCTCCCTATCCTACCCAATCCA 60.158 54.545 0.00 0.00 0.00 3.41
897 963 2.251605 TCCCTATCCTACCCAATCCACA 59.748 50.000 0.00 0.00 0.00 4.17
898 964 2.372172 CCCTATCCTACCCAATCCACAC 59.628 54.545 0.00 0.00 0.00 3.82
899 965 2.037251 CCTATCCTACCCAATCCACACG 59.963 54.545 0.00 0.00 0.00 4.49
900 966 0.180406 ATCCTACCCAATCCACACGC 59.820 55.000 0.00 0.00 0.00 5.34
952 1762 0.997196 CGTACGCCTTAAGTTCAGCC 59.003 55.000 0.52 0.00 0.00 4.85
987 1797 1.492873 CATTCCACACACGTGCTCG 59.507 57.895 17.22 6.63 42.17 5.03
990 1800 0.874175 TTCCACACACGTGCTCGAAG 60.874 55.000 17.22 9.29 42.17 3.79
991 1801 2.310233 CCACACACGTGCTCGAAGG 61.310 63.158 17.22 5.57 42.17 3.46
995 1805 1.007271 ACACGTGCTCGAAGGTCAG 60.007 57.895 17.22 0.00 40.62 3.51
996 1806 1.285950 CACGTGCTCGAAGGTCAGA 59.714 57.895 16.04 0.00 40.62 3.27
999 1809 1.272781 CGTGCTCGAAGGTCAGAATC 58.727 55.000 1.00 0.00 39.71 2.52
1044 1854 0.172578 TCGATTCTACCGTGGCAGTG 59.827 55.000 0.00 0.00 0.00 3.66
1230 2052 3.014085 TTACGGCCCGCTCTTCCTG 62.014 63.158 1.23 0.00 0.00 3.86
1901 2764 1.729881 GGATTGATGTCAAGGCGCC 59.270 57.895 21.89 21.89 39.47 6.53
1919 2782 2.878406 CGCCCATCTTGGTAATTCGATT 59.122 45.455 0.00 0.00 35.17 3.34
1938 2805 3.874392 TTAAGAACCACGGCCTACTAC 57.126 47.619 0.00 0.00 0.00 2.73
1948 2815 1.874872 CGGCCTACTACTCTGCTACTC 59.125 57.143 0.00 0.00 0.00 2.59
1950 2817 2.232399 GCCTACTACTCTGCTACTCCC 58.768 57.143 0.00 0.00 0.00 4.30
1951 2818 2.158579 GCCTACTACTCTGCTACTCCCT 60.159 54.545 0.00 0.00 0.00 4.20
1952 2819 3.746940 CCTACTACTCTGCTACTCCCTC 58.253 54.545 0.00 0.00 0.00 4.30
1953 2820 2.740506 ACTACTCTGCTACTCCCTCC 57.259 55.000 0.00 0.00 0.00 4.30
1954 2821 1.134037 ACTACTCTGCTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
1955 2822 0.917533 TACTCTGCTACTCCCTCCGT 59.082 55.000 0.00 0.00 0.00 4.69
1956 2823 0.917533 ACTCTGCTACTCCCTCCGTA 59.082 55.000 0.00 0.00 0.00 4.02
1957 2824 1.284198 ACTCTGCTACTCCCTCCGTAA 59.716 52.381 0.00 0.00 0.00 3.18
1958 2825 2.291411 ACTCTGCTACTCCCTCCGTAAA 60.291 50.000 0.00 0.00 0.00 2.01
1959 2826 2.097825 TCTGCTACTCCCTCCGTAAAC 58.902 52.381 0.00 0.00 0.00 2.01
1960 2827 2.100989 CTGCTACTCCCTCCGTAAACT 58.899 52.381 0.00 0.00 0.00 2.66
1961 2828 3.054139 TCTGCTACTCCCTCCGTAAACTA 60.054 47.826 0.00 0.00 0.00 2.24
1962 2829 3.698040 CTGCTACTCCCTCCGTAAACTAA 59.302 47.826 0.00 0.00 0.00 2.24
1963 2830 4.284178 TGCTACTCCCTCCGTAAACTAAT 58.716 43.478 0.00 0.00 0.00 1.73
1964 2831 4.713321 TGCTACTCCCTCCGTAAACTAATT 59.287 41.667 0.00 0.00 0.00 1.40
1965 2832 5.163478 TGCTACTCCCTCCGTAAACTAATTC 60.163 44.000 0.00 0.00 0.00 2.17
1966 2833 4.382345 ACTCCCTCCGTAAACTAATTCG 57.618 45.455 0.00 0.00 0.00 3.34
1967 2834 4.019174 ACTCCCTCCGTAAACTAATTCGA 58.981 43.478 0.00 0.00 0.00 3.71
1968 2835 4.648307 ACTCCCTCCGTAAACTAATTCGAT 59.352 41.667 0.00 0.00 0.00 3.59
1969 2836 5.192327 TCCCTCCGTAAACTAATTCGATC 57.808 43.478 0.00 0.00 0.00 3.69
1970 2837 4.646040 TCCCTCCGTAAACTAATTCGATCA 59.354 41.667 0.00 0.00 0.00 2.92
1971 2838 5.127519 TCCCTCCGTAAACTAATTCGATCAA 59.872 40.000 0.00 0.00 0.00 2.57
1972 2839 5.462398 CCCTCCGTAAACTAATTCGATCAAG 59.538 44.000 0.00 0.00 0.00 3.02
1973 2840 6.270815 CCTCCGTAAACTAATTCGATCAAGA 58.729 40.000 0.00 0.00 0.00 3.02
1974 2841 6.755141 CCTCCGTAAACTAATTCGATCAAGAA 59.245 38.462 0.00 0.00 34.31 2.52
1975 2842 7.438459 CCTCCGTAAACTAATTCGATCAAGAAT 59.562 37.037 0.00 0.00 42.13 2.40
1976 2843 8.348983 TCCGTAAACTAATTCGATCAAGAATC 57.651 34.615 0.00 0.00 39.69 2.52
1977 2844 7.977293 TCCGTAAACTAATTCGATCAAGAATCA 59.023 33.333 0.00 0.00 39.69 2.57
1978 2845 8.056571 CCGTAAACTAATTCGATCAAGAATCAC 58.943 37.037 0.00 0.00 39.69 3.06
1979 2846 8.808529 CGTAAACTAATTCGATCAAGAATCACT 58.191 33.333 0.00 0.00 39.69 3.41
1982 2849 9.653287 AAACTAATTCGATCAAGAATCACTACA 57.347 29.630 0.00 0.00 39.69 2.74
1983 2850 8.864069 ACTAATTCGATCAAGAATCACTACAG 57.136 34.615 0.00 0.00 39.69 2.74
1984 2851 8.470805 ACTAATTCGATCAAGAATCACTACAGT 58.529 33.333 0.00 0.00 39.69 3.55
1985 2852 7.531280 AATTCGATCAAGAATCACTACAGTG 57.469 36.000 2.84 2.84 39.69 3.66
2041 2908 4.530946 AGTACTGTTGTAACCTAGCACCAT 59.469 41.667 0.00 0.00 0.00 3.55
2079 2947 4.499758 GTGTTAACACGATCGATCCTTCTC 59.500 45.833 24.34 5.66 37.10 2.87
2098 2966 2.559668 CTCCACATTGCAGGACATGTTT 59.440 45.455 0.00 0.00 0.00 2.83
2157 3026 1.730064 GACGATGGCGAGCTTGTTAAA 59.270 47.619 2.14 0.00 41.64 1.52
2165 3034 3.673338 GGCGAGCTTGTTAAAAATCCAAC 59.327 43.478 2.14 0.00 0.00 3.77
2226 3095 2.893398 GGTACGCAGGGAGGAGTG 59.107 66.667 0.00 0.00 0.00 3.51
2241 3110 0.175531 GAGTGCTTGAGGAGGAGCTC 59.824 60.000 4.71 4.71 39.60 4.09
2277 3146 0.250684 TCCACGCTGCCATGAAAGAA 60.251 50.000 0.00 0.00 0.00 2.52
2443 3312 1.522580 GATGAGTTCCGGCCAGAGC 60.523 63.158 2.24 0.00 38.76 4.09
2470 3339 1.144057 GACAGGGCCATGGACTACG 59.856 63.158 23.35 8.78 0.00 3.51
2475 3344 4.157120 GCCATGGACTACGGCGGT 62.157 66.667 18.40 0.00 35.79 5.68
2481 3350 0.396139 TGGACTACGGCGGTAAGGAT 60.396 55.000 13.24 0.00 0.00 3.24
2577 3446 5.163509 ACTCACACTAGCGAACATGATGTAT 60.164 40.000 0.00 0.00 0.00 2.29
2613 3482 3.727258 CCGGATGGCCAGAACCCA 61.727 66.667 13.05 0.00 36.66 4.51
2622 3491 1.680249 GGCCAGAACCCAGAGTCATTC 60.680 57.143 0.00 0.00 0.00 2.67
2679 3548 5.710567 GCTTAAGTACCCTTTGATCCTTGTT 59.289 40.000 4.02 0.00 31.89 2.83
2703 3572 5.581479 TGCAAAACCTTTATAAGCATGCATG 59.419 36.000 22.70 22.70 0.00 4.06
2705 3574 4.326504 AACCTTTATAAGCATGCATGGC 57.673 40.909 27.34 18.86 0.00 4.40
2708 3577 3.501828 CCTTTATAAGCATGCATGGCGTA 59.498 43.478 27.34 20.11 36.08 4.42
2749 3623 8.886719 CACCGATCTTACTACCGTATATTATCA 58.113 37.037 0.00 0.00 0.00 2.15
2820 3695 4.368067 TCTTGGGTGGGCTTACTTATAGT 58.632 43.478 0.00 0.00 0.00 2.12
2821 3696 4.786454 TCTTGGGTGGGCTTACTTATAGTT 59.214 41.667 0.00 0.00 0.00 2.24
2842 3717 7.684937 AGTTAGTCACGTAGAAGTATGAAGT 57.315 36.000 0.00 0.00 0.00 3.01
2843 3718 8.783833 AGTTAGTCACGTAGAAGTATGAAGTA 57.216 34.615 0.00 0.00 0.00 2.24
2844 3719 9.393512 AGTTAGTCACGTAGAAGTATGAAGTAT 57.606 33.333 0.00 0.00 0.00 2.12
2848 3723 7.502895 AGTCACGTAGAAGTATGAAGTATCCAT 59.497 37.037 0.00 0.00 0.00 3.41
2862 3737 1.264869 ATCCATAGGGGGAGGGAGAA 58.735 55.000 0.00 0.00 41.08 2.87
2868 3743 1.162951 AGGGGGAGGGAGAAGGAGAA 61.163 60.000 0.00 0.00 0.00 2.87
2883 3758 1.916206 GAGAAGGAGGTTGGAGCCCC 61.916 65.000 0.00 0.00 0.00 5.80
2915 3790 6.550938 TCATTGGAGACTATGAAGACACAT 57.449 37.500 0.00 0.00 46.99 3.21
2920 3795 6.533730 TGGAGACTATGAAGACACATGTTTT 58.466 36.000 0.00 0.00 0.00 2.43
2930 3805 3.880490 AGACACATGTTTTCGCAGGTTAA 59.120 39.130 0.00 0.00 30.45 2.01
2931 3806 4.024048 AGACACATGTTTTCGCAGGTTAAG 60.024 41.667 0.00 0.00 30.45 1.85
2935 3810 0.109919 GTTTTCGCAGGTTAAGGCCG 60.110 55.000 0.00 0.00 0.00 6.13
2967 3842 0.393077 CGATGGGTGATGGACCTACC 59.607 60.000 0.00 0.00 45.33 3.18
3097 4288 2.169978 GGGACCTTGGGTACTCATGTAC 59.830 54.545 0.00 0.00 46.06 2.90
3132 4323 3.201290 GTCGGTAAGTCATCGGTCTCTA 58.799 50.000 0.00 0.00 0.00 2.43
3136 4327 3.946558 GGTAAGTCATCGGTCTCTAGTGT 59.053 47.826 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.096003 CAGGCACCTACCACGGGG 62.096 72.222 0.00 0.00 41.29 5.73
1 2 4.778143 GCAGGCACCTACCACGGG 62.778 72.222 0.00 0.00 0.00 5.28
15 16 1.002134 ATTCAGGGTTCCACCGCAG 60.002 57.895 0.00 0.00 39.83 5.18
16 17 1.002624 GATTCAGGGTTCCACCGCA 60.003 57.895 0.00 0.00 39.83 5.69
17 18 1.749258 GGATTCAGGGTTCCACCGC 60.749 63.158 0.00 0.00 39.83 5.68
18 19 1.449601 CGGATTCAGGGTTCCACCG 60.450 63.158 0.00 0.00 39.83 4.94
19 20 1.077716 CCGGATTCAGGGTTCCACC 60.078 63.158 0.00 0.00 37.60 4.61
20 21 0.676782 CACCGGATTCAGGGTTCCAC 60.677 60.000 9.46 0.00 33.23 4.02
21 22 1.682849 CACCGGATTCAGGGTTCCA 59.317 57.895 9.46 0.00 33.23 3.53
22 23 1.749258 GCACCGGATTCAGGGTTCC 60.749 63.158 9.46 0.00 33.23 3.62
23 24 1.749258 GGCACCGGATTCAGGGTTC 60.749 63.158 9.46 0.00 33.23 3.62
24 25 2.355115 GGCACCGGATTCAGGGTT 59.645 61.111 9.46 0.00 33.23 4.11
25 26 4.096003 CGGCACCGGATTCAGGGT 62.096 66.667 9.46 0.48 36.87 4.34
35 36 3.803082 CAGCAACATCCGGCACCG 61.803 66.667 1.02 1.02 39.44 4.94
36 37 3.443045 CCAGCAACATCCGGCACC 61.443 66.667 0.00 0.00 0.00 5.01
37 38 2.359850 TCCAGCAACATCCGGCAC 60.360 61.111 0.00 0.00 0.00 5.01
38 39 2.046023 CTCCAGCAACATCCGGCA 60.046 61.111 0.00 0.00 0.00 5.69
39 40 1.372087 CTTCTCCAGCAACATCCGGC 61.372 60.000 0.00 0.00 0.00 6.13
40 41 0.745845 CCTTCTCCAGCAACATCCGG 60.746 60.000 0.00 0.00 0.00 5.14
41 42 1.372087 GCCTTCTCCAGCAACATCCG 61.372 60.000 0.00 0.00 0.00 4.18
42 43 1.372087 CGCCTTCTCCAGCAACATCC 61.372 60.000 0.00 0.00 0.00 3.51
43 44 1.372087 CCGCCTTCTCCAGCAACATC 61.372 60.000 0.00 0.00 0.00 3.06
44 45 1.377725 CCGCCTTCTCCAGCAACAT 60.378 57.895 0.00 0.00 0.00 2.71
45 46 1.841302 ATCCGCCTTCTCCAGCAACA 61.841 55.000 0.00 0.00 0.00 3.33
46 47 1.078143 ATCCGCCTTCTCCAGCAAC 60.078 57.895 0.00 0.00 0.00 4.17
47 48 1.221840 GATCCGCCTTCTCCAGCAA 59.778 57.895 0.00 0.00 0.00 3.91
48 49 1.680522 GAGATCCGCCTTCTCCAGCA 61.681 60.000 0.00 0.00 34.75 4.41
49 50 1.068921 GAGATCCGCCTTCTCCAGC 59.931 63.158 0.00 0.00 34.75 4.85
50 51 1.361993 CGAGATCCGCCTTCTCCAG 59.638 63.158 0.00 0.00 37.00 3.86
51 52 3.526430 CGAGATCCGCCTTCTCCA 58.474 61.111 0.00 0.00 37.00 3.86
62 63 4.357947 TATGGCCGCCGCGAGATC 62.358 66.667 15.93 1.09 35.02 2.75
63 64 4.363990 CTATGGCCGCCGCGAGAT 62.364 66.667 15.93 5.40 35.02 2.75
74 75 0.034337 TCGTAAATCCCGGCTATGGC 59.966 55.000 0.00 0.00 37.82 4.40
75 76 1.792006 GTCGTAAATCCCGGCTATGG 58.208 55.000 0.00 0.00 0.00 2.74
76 77 1.415374 CGTCGTAAATCCCGGCTATG 58.585 55.000 0.00 0.00 0.00 2.23
77 78 0.316204 CCGTCGTAAATCCCGGCTAT 59.684 55.000 0.00 0.00 33.20 2.97
78 79 0.751277 TCCGTCGTAAATCCCGGCTA 60.751 55.000 0.00 0.00 40.23 3.93
79 80 2.012902 CTCCGTCGTAAATCCCGGCT 62.013 60.000 0.00 0.00 40.23 5.52
80 81 1.590792 CTCCGTCGTAAATCCCGGC 60.591 63.158 0.00 0.00 40.23 6.13
81 82 1.590792 GCTCCGTCGTAAATCCCGG 60.591 63.158 0.00 0.00 41.75 5.73
82 83 1.590792 GGCTCCGTCGTAAATCCCG 60.591 63.158 0.00 0.00 0.00 5.14
83 84 1.227468 GGGCTCCGTCGTAAATCCC 60.227 63.158 0.00 0.00 0.00 3.85
84 85 1.227468 GGGGCTCCGTCGTAAATCC 60.227 63.158 0.00 0.00 0.00 3.01
85 86 0.106149 ATGGGGCTCCGTCGTAAATC 59.894 55.000 0.00 0.00 35.24 2.17
86 87 0.179056 CATGGGGCTCCGTCGTAAAT 60.179 55.000 0.00 0.00 35.24 1.40
87 88 1.219664 CATGGGGCTCCGTCGTAAA 59.780 57.895 0.00 0.00 35.24 2.01
88 89 1.259142 TTCATGGGGCTCCGTCGTAA 61.259 55.000 0.00 0.00 35.24 3.18
89 90 1.259142 TTTCATGGGGCTCCGTCGTA 61.259 55.000 0.00 0.00 35.24 3.43
90 91 2.589157 TTTCATGGGGCTCCGTCGT 61.589 57.895 0.00 0.00 35.24 4.34
91 92 2.106683 GTTTCATGGGGCTCCGTCG 61.107 63.158 0.00 0.00 35.24 5.12
92 93 2.106683 CGTTTCATGGGGCTCCGTC 61.107 63.158 0.00 0.00 35.24 4.79
93 94 2.046314 CGTTTCATGGGGCTCCGT 60.046 61.111 0.00 0.00 35.24 4.69
94 95 1.376683 TTCGTTTCATGGGGCTCCG 60.377 57.895 0.00 0.00 35.24 4.63
95 96 0.322546 AGTTCGTTTCATGGGGCTCC 60.323 55.000 0.00 0.00 0.00 4.70
96 97 0.804989 CAGTTCGTTTCATGGGGCTC 59.195 55.000 0.00 0.00 0.00 4.70
97 98 0.400213 TCAGTTCGTTTCATGGGGCT 59.600 50.000 0.00 0.00 0.00 5.19
98 99 0.521735 GTCAGTTCGTTTCATGGGGC 59.478 55.000 0.00 0.00 0.00 5.80
99 100 1.890876 TGTCAGTTCGTTTCATGGGG 58.109 50.000 0.00 0.00 0.00 4.96
100 101 3.138304 TCTTGTCAGTTCGTTTCATGGG 58.862 45.455 0.00 0.00 0.00 4.00
101 102 4.058124 TCTCTTGTCAGTTCGTTTCATGG 58.942 43.478 0.00 0.00 0.00 3.66
102 103 5.390251 CCATCTCTTGTCAGTTCGTTTCATG 60.390 44.000 0.00 0.00 0.00 3.07
103 104 4.692625 CCATCTCTTGTCAGTTCGTTTCAT 59.307 41.667 0.00 0.00 0.00 2.57
104 105 4.058124 CCATCTCTTGTCAGTTCGTTTCA 58.942 43.478 0.00 0.00 0.00 2.69
105 106 3.433615 CCCATCTCTTGTCAGTTCGTTTC 59.566 47.826 0.00 0.00 0.00 2.78
106 107 3.403038 CCCATCTCTTGTCAGTTCGTTT 58.597 45.455 0.00 0.00 0.00 3.60
107 108 2.289694 CCCCATCTCTTGTCAGTTCGTT 60.290 50.000 0.00 0.00 0.00 3.85
108 109 1.276421 CCCCATCTCTTGTCAGTTCGT 59.724 52.381 0.00 0.00 0.00 3.85
109 110 1.276421 ACCCCATCTCTTGTCAGTTCG 59.724 52.381 0.00 0.00 0.00 3.95
110 111 2.616510 CCACCCCATCTCTTGTCAGTTC 60.617 54.545 0.00 0.00 0.00 3.01
111 112 1.352352 CCACCCCATCTCTTGTCAGTT 59.648 52.381 0.00 0.00 0.00 3.16
112 113 0.987294 CCACCCCATCTCTTGTCAGT 59.013 55.000 0.00 0.00 0.00 3.41
113 114 0.254178 CCCACCCCATCTCTTGTCAG 59.746 60.000 0.00 0.00 0.00 3.51
114 115 1.207488 CCCCACCCCATCTCTTGTCA 61.207 60.000 0.00 0.00 0.00 3.58
115 116 0.914417 TCCCCACCCCATCTCTTGTC 60.914 60.000 0.00 0.00 0.00 3.18
116 117 0.916358 CTCCCCACCCCATCTCTTGT 60.916 60.000 0.00 0.00 0.00 3.16
117 118 0.621571 TCTCCCCACCCCATCTCTTG 60.622 60.000 0.00 0.00 0.00 3.02
118 119 0.121197 TTCTCCCCACCCCATCTCTT 59.879 55.000 0.00 0.00 0.00 2.85
119 120 0.121197 TTTCTCCCCACCCCATCTCT 59.879 55.000 0.00 0.00 0.00 3.10
120 121 0.548510 CTTTCTCCCCACCCCATCTC 59.451 60.000 0.00 0.00 0.00 2.75
121 122 0.921256 CCTTTCTCCCCACCCCATCT 60.921 60.000 0.00 0.00 0.00 2.90
122 123 0.919289 TCCTTTCTCCCCACCCCATC 60.919 60.000 0.00 0.00 0.00 3.51
123 124 0.921256 CTCCTTTCTCCCCACCCCAT 60.921 60.000 0.00 0.00 0.00 4.00
124 125 1.541368 CTCCTTTCTCCCCACCCCA 60.541 63.158 0.00 0.00 0.00 4.96
125 126 0.624795 ATCTCCTTTCTCCCCACCCC 60.625 60.000 0.00 0.00 0.00 4.95
126 127 0.840617 GATCTCCTTTCTCCCCACCC 59.159 60.000 0.00 0.00 0.00 4.61
127 128 0.466124 CGATCTCCTTTCTCCCCACC 59.534 60.000 0.00 0.00 0.00 4.61
128 129 1.486211 TCGATCTCCTTTCTCCCCAC 58.514 55.000 0.00 0.00 0.00 4.61
129 130 2.042464 CATCGATCTCCTTTCTCCCCA 58.958 52.381 0.00 0.00 0.00 4.96
130 131 1.270571 GCATCGATCTCCTTTCTCCCC 60.271 57.143 0.00 0.00 0.00 4.81
131 132 1.604185 CGCATCGATCTCCTTTCTCCC 60.604 57.143 0.00 0.00 0.00 4.30
132 133 1.604185 CCGCATCGATCTCCTTTCTCC 60.604 57.143 0.00 0.00 0.00 3.71
133 134 1.604185 CCCGCATCGATCTCCTTTCTC 60.604 57.143 0.00 0.00 0.00 2.87
134 135 0.390860 CCCGCATCGATCTCCTTTCT 59.609 55.000 0.00 0.00 0.00 2.52
135 136 0.389391 TCCCGCATCGATCTCCTTTC 59.611 55.000 0.00 0.00 0.00 2.62
136 137 0.830648 TTCCCGCATCGATCTCCTTT 59.169 50.000 0.00 0.00 0.00 3.11
137 138 0.390860 CTTCCCGCATCGATCTCCTT 59.609 55.000 0.00 0.00 0.00 3.36
138 139 1.467678 CCTTCCCGCATCGATCTCCT 61.468 60.000 0.00 0.00 0.00 3.69
139 140 1.005630 CCTTCCCGCATCGATCTCC 60.006 63.158 0.00 0.00 0.00 3.71
140 141 0.038709 CTCCTTCCCGCATCGATCTC 60.039 60.000 0.00 0.00 0.00 2.75
141 142 0.468214 TCTCCTTCCCGCATCGATCT 60.468 55.000 0.00 0.00 0.00 2.75
142 143 0.319125 GTCTCCTTCCCGCATCGATC 60.319 60.000 0.00 0.00 0.00 3.69
143 144 1.043116 TGTCTCCTTCCCGCATCGAT 61.043 55.000 0.00 0.00 0.00 3.59
144 145 1.667154 CTGTCTCCTTCCCGCATCGA 61.667 60.000 0.00 0.00 0.00 3.59
145 146 1.227089 CTGTCTCCTTCCCGCATCG 60.227 63.158 0.00 0.00 0.00 3.84
146 147 1.522580 GCTGTCTCCTTCCCGCATC 60.523 63.158 0.00 0.00 0.00 3.91
147 148 2.586792 GCTGTCTCCTTCCCGCAT 59.413 61.111 0.00 0.00 0.00 4.73
148 149 4.069232 CGCTGTCTCCTTCCCGCA 62.069 66.667 0.00 0.00 0.00 5.69
149 150 4.821589 CCGCTGTCTCCTTCCCGC 62.822 72.222 0.00 0.00 0.00 6.13
150 151 4.821589 GCCGCTGTCTCCTTCCCG 62.822 72.222 0.00 0.00 0.00 5.14
151 152 4.821589 CGCCGCTGTCTCCTTCCC 62.822 72.222 0.00 0.00 0.00 3.97
152 153 4.070552 ACGCCGCTGTCTCCTTCC 62.071 66.667 0.00 0.00 0.00 3.46
153 154 2.811317 CACGCCGCTGTCTCCTTC 60.811 66.667 0.00 0.00 0.00 3.46
154 155 4.379243 CCACGCCGCTGTCTCCTT 62.379 66.667 0.00 0.00 0.00 3.36
161 162 2.940890 ATATCAACCCCACGCCGCTG 62.941 60.000 0.00 0.00 0.00 5.18
162 163 2.660258 GATATCAACCCCACGCCGCT 62.660 60.000 0.00 0.00 0.00 5.52
163 164 2.203153 ATATCAACCCCACGCCGC 60.203 61.111 0.00 0.00 0.00 6.53
164 165 1.597027 GGATATCAACCCCACGCCG 60.597 63.158 4.83 0.00 0.00 6.46
165 166 0.250338 GAGGATATCAACCCCACGCC 60.250 60.000 4.83 0.00 0.00 5.68
166 167 0.759346 AGAGGATATCAACCCCACGC 59.241 55.000 4.83 0.00 0.00 5.34
167 168 2.320781 AGAGAGGATATCAACCCCACG 58.679 52.381 4.83 0.00 0.00 4.94
168 169 4.709250 GAAAGAGAGGATATCAACCCCAC 58.291 47.826 4.83 0.00 0.00 4.61
169 170 3.388024 CGAAAGAGAGGATATCAACCCCA 59.612 47.826 4.83 0.00 0.00 4.96
170 171 3.388350 ACGAAAGAGAGGATATCAACCCC 59.612 47.826 4.83 0.00 0.00 4.95
171 172 4.372656 CACGAAAGAGAGGATATCAACCC 58.627 47.826 4.83 0.00 0.00 4.11
172 173 4.372656 CCACGAAAGAGAGGATATCAACC 58.627 47.826 4.83 0.00 0.00 3.77
173 174 4.372656 CCCACGAAAGAGAGGATATCAAC 58.627 47.826 4.83 0.00 0.00 3.18
174 175 3.388024 CCCCACGAAAGAGAGGATATCAA 59.612 47.826 4.83 0.00 0.00 2.57
175 176 2.965831 CCCCACGAAAGAGAGGATATCA 59.034 50.000 4.83 0.00 0.00 2.15
176 177 2.289133 GCCCCACGAAAGAGAGGATATC 60.289 54.545 0.00 0.00 0.00 1.63
177 178 1.694696 GCCCCACGAAAGAGAGGATAT 59.305 52.381 0.00 0.00 0.00 1.63
178 179 1.120530 GCCCCACGAAAGAGAGGATA 58.879 55.000 0.00 0.00 0.00 2.59
179 180 1.627297 GGCCCCACGAAAGAGAGGAT 61.627 60.000 0.00 0.00 0.00 3.24
180 181 2.291043 GGCCCCACGAAAGAGAGGA 61.291 63.158 0.00 0.00 0.00 3.71
181 182 2.269241 GGCCCCACGAAAGAGAGG 59.731 66.667 0.00 0.00 0.00 3.69
182 183 1.915078 ATGGGCCCCACGAAAGAGAG 61.915 60.000 22.27 0.00 35.80 3.20
183 184 1.910580 GATGGGCCCCACGAAAGAGA 61.911 60.000 22.27 0.00 35.80 3.10
184 185 1.452108 GATGGGCCCCACGAAAGAG 60.452 63.158 22.27 0.00 35.80 2.85
185 186 2.227757 TGATGGGCCCCACGAAAGA 61.228 57.895 22.27 0.00 35.80 2.52
186 187 2.046285 GTGATGGGCCCCACGAAAG 61.046 63.158 22.27 0.00 35.80 2.62
187 188 2.034999 GTGATGGGCCCCACGAAA 59.965 61.111 22.27 0.00 35.80 3.46
191 192 0.395173 AAATACGTGATGGGCCCCAC 60.395 55.000 22.27 20.06 35.80 4.61
192 193 0.395036 CAAATACGTGATGGGCCCCA 60.395 55.000 22.27 4.05 38.19 4.96
193 194 1.734388 GCAAATACGTGATGGGCCCC 61.734 60.000 22.27 4.91 0.00 5.80
194 195 1.034838 TGCAAATACGTGATGGGCCC 61.035 55.000 17.59 17.59 0.00 5.80
195 196 0.381801 CTGCAAATACGTGATGGGCC 59.618 55.000 0.00 0.00 0.00 5.80
196 197 1.094785 ACTGCAAATACGTGATGGGC 58.905 50.000 0.00 0.00 0.00 5.36
197 198 2.487762 ACAACTGCAAATACGTGATGGG 59.512 45.455 0.00 0.00 0.00 4.00
198 199 3.829886 ACAACTGCAAATACGTGATGG 57.170 42.857 0.00 0.00 0.00 3.51
199 200 6.999456 TGTATACAACTGCAAATACGTGATG 58.001 36.000 2.20 0.00 0.00 3.07
200 201 7.234187 CTGTATACAACTGCAAATACGTGAT 57.766 36.000 7.06 0.00 0.00 3.06
201 202 6.641176 CTGTATACAACTGCAAATACGTGA 57.359 37.500 7.06 0.00 0.00 4.35
208 209 8.012601 AGGATACAAGCTGTATACAACTGCAAA 61.013 37.037 9.50 0.00 44.69 3.68
209 210 6.576244 AGGATACAAGCTGTATACAACTGCAA 60.576 38.462 9.50 0.00 44.69 4.08
210 211 5.104941 AGGATACAAGCTGTATACAACTGCA 60.105 40.000 9.50 0.00 44.69 4.41
211 212 5.235186 CAGGATACAAGCTGTATACAACTGC 59.765 44.000 9.50 8.35 44.69 4.40
212 213 5.755375 CCAGGATACAAGCTGTATACAACTG 59.245 44.000 9.50 7.98 44.69 3.16
213 214 5.661312 TCCAGGATACAAGCTGTATACAACT 59.339 40.000 16.20 4.89 44.69 3.16
214 215 5.914033 TCCAGGATACAAGCTGTATACAAC 58.086 41.667 16.20 2.23 44.69 3.32
215 216 6.553953 TTCCAGGATACAAGCTGTATACAA 57.446 37.500 16.20 0.00 44.69 2.41
216 217 6.554982 AGATTCCAGGATACAAGCTGTATACA 59.445 38.462 16.20 5.25 44.69 2.29
217 218 6.870965 CAGATTCCAGGATACAAGCTGTATAC 59.129 42.308 9.35 9.35 43.08 1.47
218 219 6.782494 TCAGATTCCAGGATACAAGCTGTATA 59.218 38.462 4.41 0.00 43.08 1.47
219 220 5.604231 TCAGATTCCAGGATACAAGCTGTAT 59.396 40.000 4.41 8.09 45.48 2.29
220 221 4.962362 TCAGATTCCAGGATACAAGCTGTA 59.038 41.667 4.41 0.00 35.64 2.74
221 222 3.776969 TCAGATTCCAGGATACAAGCTGT 59.223 43.478 4.41 0.00 35.64 4.40
222 223 4.378774 CTCAGATTCCAGGATACAAGCTG 58.621 47.826 0.00 0.00 35.51 4.24
223 224 3.390639 CCTCAGATTCCAGGATACAAGCT 59.609 47.826 0.00 0.00 41.41 3.74
224 225 3.135530 ACCTCAGATTCCAGGATACAAGC 59.864 47.826 6.32 0.00 41.41 4.01
225 226 4.444022 CCACCTCAGATTCCAGGATACAAG 60.444 50.000 6.32 0.00 41.41 3.16
226 227 3.455910 CCACCTCAGATTCCAGGATACAA 59.544 47.826 6.32 0.00 41.41 2.41
227 228 3.041211 CCACCTCAGATTCCAGGATACA 58.959 50.000 6.32 0.00 41.41 2.29
228 229 3.309296 TCCACCTCAGATTCCAGGATAC 58.691 50.000 6.32 0.00 33.52 2.24
229 230 3.706389 TCCACCTCAGATTCCAGGATA 57.294 47.619 6.32 0.00 33.52 2.59
230 231 2.575921 TCCACCTCAGATTCCAGGAT 57.424 50.000 6.32 0.00 33.52 3.24
231 232 2.342406 TTCCACCTCAGATTCCAGGA 57.658 50.000 6.32 0.00 33.52 3.86
232 233 3.659183 ATTTCCACCTCAGATTCCAGG 57.341 47.619 0.00 0.00 35.69 4.45
233 234 7.466746 TTTTTATTTCCACCTCAGATTCCAG 57.533 36.000 0.00 0.00 0.00 3.86
254 255 2.287977 GGTGGACCCTGCTAGTTTTT 57.712 50.000 0.00 0.00 0.00 1.94
266 267 1.466025 TATATCCGTGCGGGTGGACC 61.466 60.000 10.94 0.00 37.02 4.46
267 268 0.038526 CTATATCCGTGCGGGTGGAC 60.039 60.000 10.94 0.00 37.02 4.02
268 269 0.178984 TCTATATCCGTGCGGGTGGA 60.179 55.000 10.94 1.90 38.95 4.02
269 270 0.677288 TTCTATATCCGTGCGGGTGG 59.323 55.000 10.94 0.00 37.00 4.61
270 271 1.935300 GCTTCTATATCCGTGCGGGTG 60.935 57.143 10.94 0.00 37.00 4.61
271 272 0.317479 GCTTCTATATCCGTGCGGGT 59.683 55.000 10.94 6.17 37.00 5.28
272 273 0.317160 TGCTTCTATATCCGTGCGGG 59.683 55.000 10.94 0.00 35.59 6.13
273 274 1.000163 AGTGCTTCTATATCCGTGCGG 60.000 52.381 3.94 3.94 0.00 5.69
274 275 2.054363 CAGTGCTTCTATATCCGTGCG 58.946 52.381 0.00 0.00 0.00 5.34
275 276 3.312828 CTCAGTGCTTCTATATCCGTGC 58.687 50.000 0.00 0.00 0.00 5.34
276 277 3.305676 CCCTCAGTGCTTCTATATCCGTG 60.306 52.174 0.00 0.00 0.00 4.94
277 278 2.894126 CCCTCAGTGCTTCTATATCCGT 59.106 50.000 0.00 0.00 0.00 4.69
278 279 3.157881 TCCCTCAGTGCTTCTATATCCG 58.842 50.000 0.00 0.00 0.00 4.18
279 280 4.081198 CCATCCCTCAGTGCTTCTATATCC 60.081 50.000 0.00 0.00 0.00 2.59
280 281 4.530161 ACCATCCCTCAGTGCTTCTATATC 59.470 45.833 0.00 0.00 0.00 1.63
281 282 4.285517 CACCATCCCTCAGTGCTTCTATAT 59.714 45.833 0.00 0.00 0.00 0.86
282 283 3.643320 CACCATCCCTCAGTGCTTCTATA 59.357 47.826 0.00 0.00 0.00 1.31
283 284 2.437281 CACCATCCCTCAGTGCTTCTAT 59.563 50.000 0.00 0.00 0.00 1.98
284 285 1.833630 CACCATCCCTCAGTGCTTCTA 59.166 52.381 0.00 0.00 0.00 2.10
285 286 0.617413 CACCATCCCTCAGTGCTTCT 59.383 55.000 0.00 0.00 0.00 2.85
286 287 0.393537 CCACCATCCCTCAGTGCTTC 60.394 60.000 0.00 0.00 0.00 3.86
287 288 0.842030 TCCACCATCCCTCAGTGCTT 60.842 55.000 0.00 0.00 0.00 3.91
288 289 0.622738 ATCCACCATCCCTCAGTGCT 60.623 55.000 0.00 0.00 0.00 4.40
289 290 0.257039 AATCCACCATCCCTCAGTGC 59.743 55.000 0.00 0.00 0.00 4.40
290 291 1.561076 TCAATCCACCATCCCTCAGTG 59.439 52.381 0.00 0.00 0.00 3.66
291 292 1.842562 CTCAATCCACCATCCCTCAGT 59.157 52.381 0.00 0.00 0.00 3.41
292 293 1.476471 GCTCAATCCACCATCCCTCAG 60.476 57.143 0.00 0.00 0.00 3.35
293 294 0.548031 GCTCAATCCACCATCCCTCA 59.452 55.000 0.00 0.00 0.00 3.86
294 295 0.548031 TGCTCAATCCACCATCCCTC 59.452 55.000 0.00 0.00 0.00 4.30
295 296 0.257039 GTGCTCAATCCACCATCCCT 59.743 55.000 0.00 0.00 0.00 4.20
296 297 2.799176 GTGCTCAATCCACCATCCC 58.201 57.895 0.00 0.00 0.00 3.85
302 303 0.036765 TGTACCGGTGCTCAATCCAC 60.037 55.000 23.67 7.81 0.00 4.02
303 304 0.908910 ATGTACCGGTGCTCAATCCA 59.091 50.000 23.67 1.33 0.00 3.41
304 305 1.583054 GATGTACCGGTGCTCAATCC 58.417 55.000 23.67 7.35 0.00 3.01
305 306 1.583054 GGATGTACCGGTGCTCAATC 58.417 55.000 23.67 16.94 0.00 2.67
306 307 0.180406 GGGATGTACCGGTGCTCAAT 59.820 55.000 23.67 8.98 40.11 2.57
307 308 1.600107 GGGATGTACCGGTGCTCAA 59.400 57.895 23.67 3.75 40.11 3.02
308 309 2.363975 GGGGATGTACCGGTGCTCA 61.364 63.158 23.67 16.40 40.11 4.26
309 310 2.504519 GGGGATGTACCGGTGCTC 59.495 66.667 23.67 16.86 40.11 4.26
316 317 3.925090 CCGGAGCGGGGATGTACC 61.925 72.222 0.00 0.00 44.15 3.34
337 338 2.089201 CCCCGCCTCGAATAAGTTTTT 58.911 47.619 0.00 0.00 0.00 1.94
338 339 1.279846 TCCCCGCCTCGAATAAGTTTT 59.720 47.619 0.00 0.00 0.00 2.43
339 340 0.906775 TCCCCGCCTCGAATAAGTTT 59.093 50.000 0.00 0.00 0.00 2.66
340 341 0.906775 TTCCCCGCCTCGAATAAGTT 59.093 50.000 0.00 0.00 0.00 2.66
341 342 1.129058 ATTCCCCGCCTCGAATAAGT 58.871 50.000 0.00 0.00 0.00 2.24
342 343 3.195825 AGATATTCCCCGCCTCGAATAAG 59.804 47.826 0.00 0.00 35.26 1.73
343 344 3.056107 CAGATATTCCCCGCCTCGAATAA 60.056 47.826 0.00 0.00 35.26 1.40
344 345 2.496070 CAGATATTCCCCGCCTCGAATA 59.504 50.000 0.00 0.00 35.88 1.75
345 346 1.276421 CAGATATTCCCCGCCTCGAAT 59.724 52.381 0.00 0.00 33.39 3.34
346 347 0.679505 CAGATATTCCCCGCCTCGAA 59.320 55.000 0.00 0.00 0.00 3.71
347 348 1.816863 GCAGATATTCCCCGCCTCGA 61.817 60.000 0.00 0.00 0.00 4.04
348 349 1.374758 GCAGATATTCCCCGCCTCG 60.375 63.158 0.00 0.00 0.00 4.63
355 356 0.792640 CATGCGACGCAGATATTCCC 59.207 55.000 28.10 0.00 43.65 3.97
392 393 1.206849 GGGAGAAGAGAAGGTGAGCAG 59.793 57.143 0.00 0.00 0.00 4.24
393 394 1.203237 AGGGAGAAGAGAAGGTGAGCA 60.203 52.381 0.00 0.00 0.00 4.26
439 440 4.041740 AGGCGTCAGGTTTTTCTTTTTC 57.958 40.909 0.00 0.00 0.00 2.29
445 446 1.535896 GGAAGAGGCGTCAGGTTTTTC 59.464 52.381 9.41 2.50 0.00 2.29
556 576 0.744771 GATCCAGCTCCCCGTGAAAC 60.745 60.000 0.00 0.00 0.00 2.78
557 577 1.602237 GATCCAGCTCCCCGTGAAA 59.398 57.895 0.00 0.00 0.00 2.69
558 578 2.367202 GGATCCAGCTCCCCGTGAA 61.367 63.158 6.95 0.00 0.00 3.18
559 579 2.764128 GGATCCAGCTCCCCGTGA 60.764 66.667 6.95 0.00 0.00 4.35
565 585 2.210711 CGGTAGGGGATCCAGCTCC 61.211 68.421 15.23 5.27 34.83 4.70
566 586 1.049289 AACGGTAGGGGATCCAGCTC 61.049 60.000 15.23 0.86 34.83 4.09
567 587 1.003051 AACGGTAGGGGATCCAGCT 59.997 57.895 15.23 0.00 34.83 4.24
568 588 1.146263 CAACGGTAGGGGATCCAGC 59.854 63.158 15.23 1.52 34.83 4.85
569 589 1.830145 CCAACGGTAGGGGATCCAG 59.170 63.158 15.23 0.00 34.83 3.86
570 590 4.060065 CCAACGGTAGGGGATCCA 57.940 61.111 15.23 0.00 34.83 3.41
575 595 4.796495 GCAGCCCAACGGTAGGGG 62.796 72.222 12.26 12.26 46.86 4.79
577 597 2.436646 CAGCAGCCCAACGGTAGG 60.437 66.667 0.00 0.00 0.00 3.18
578 598 1.741770 GTCAGCAGCCCAACGGTAG 60.742 63.158 0.00 0.00 0.00 3.18
579 599 2.345991 GTCAGCAGCCCAACGGTA 59.654 61.111 0.00 0.00 0.00 4.02
580 600 4.988598 CGTCAGCAGCCCAACGGT 62.989 66.667 4.34 0.00 0.00 4.83
583 603 4.643387 ACCCGTCAGCAGCCCAAC 62.643 66.667 0.00 0.00 0.00 3.77
584 604 4.641645 CACCCGTCAGCAGCCCAA 62.642 66.667 0.00 0.00 0.00 4.12
589 609 4.394712 GGACCCACCCGTCAGCAG 62.395 72.222 0.00 0.00 34.24 4.24
614 634 2.972505 GGCCCACACACTGACGTG 60.973 66.667 0.00 0.00 46.63 4.49
615 635 4.602259 CGGCCCACACACTGACGT 62.602 66.667 0.00 0.00 0.00 4.34
616 636 3.215597 TACGGCCCACACACTGACG 62.216 63.158 0.00 0.00 0.00 4.35
617 637 1.666872 GTACGGCCCACACACTGAC 60.667 63.158 0.00 0.00 0.00 3.51
618 638 2.738480 GTACGGCCCACACACTGA 59.262 61.111 0.00 0.00 0.00 3.41
619 639 2.736995 CGTACGGCCCACACACTG 60.737 66.667 7.57 0.00 0.00 3.66
620 640 3.216944 GACGTACGGCCCACACACT 62.217 63.158 21.06 0.00 0.00 3.55
621 641 2.735857 GACGTACGGCCCACACAC 60.736 66.667 21.06 0.00 0.00 3.82
622 642 3.215597 CTGACGTACGGCCCACACA 62.216 63.158 20.48 0.00 0.00 3.72
623 643 2.431942 CTGACGTACGGCCCACAC 60.432 66.667 20.48 1.76 0.00 3.82
624 644 2.598099 TCTGACGTACGGCCCACA 60.598 61.111 20.48 9.53 0.00 4.17
625 645 2.126189 GTCTGACGTACGGCCCAC 60.126 66.667 20.48 11.37 0.00 4.61
626 646 3.740397 CGTCTGACGTACGGCCCA 61.740 66.667 20.48 12.43 36.74 5.36
627 647 3.392595 CTCGTCTGACGTACGGCCC 62.393 68.421 27.16 8.13 43.14 5.80
628 648 2.099831 CTCGTCTGACGTACGGCC 59.900 66.667 27.16 10.81 43.14 6.13
629 649 2.576317 GCTCGTCTGACGTACGGC 60.576 66.667 27.16 18.72 43.14 5.68
630 650 2.099831 GGCTCGTCTGACGTACGG 59.900 66.667 27.16 16.97 43.14 4.02
631 651 2.276493 CGGCTCGTCTGACGTACG 60.276 66.667 27.16 23.69 43.14 3.67
632 652 2.576317 GCGGCTCGTCTGACGTAC 60.576 66.667 27.16 19.93 43.14 3.67
633 653 4.156622 CGCGGCTCGTCTGACGTA 62.157 66.667 27.16 14.42 43.14 3.57
643 663 3.774702 GTGAAACGGACGCGGCTC 61.775 66.667 13.91 0.70 0.00 4.70
673 693 1.333524 CGAATCACATTCAGCGATGGC 60.334 52.381 0.00 0.00 39.22 4.40
686 706 0.935366 GCTCGGATCGGACGAATCAC 60.935 60.000 0.00 0.00 40.16 3.06
687 707 1.101635 AGCTCGGATCGGACGAATCA 61.102 55.000 0.00 0.00 40.16 2.57
688 708 0.661780 CAGCTCGGATCGGACGAATC 60.662 60.000 0.00 0.00 40.16 2.52
689 709 1.360551 CAGCTCGGATCGGACGAAT 59.639 57.895 0.00 0.00 40.16 3.34
717 779 3.343788 GACGGACAGAGACCCTGCG 62.344 68.421 0.00 0.00 46.81 5.18
775 837 2.590007 CTAGCGGAGTGGCATGCC 60.590 66.667 30.54 30.54 34.64 4.40
776 838 3.275338 GCTAGCGGAGTGGCATGC 61.275 66.667 9.90 9.90 34.64 4.06
777 839 1.593750 GAGCTAGCGGAGTGGCATG 60.594 63.158 9.55 0.00 34.64 4.06
778 840 2.801631 GGAGCTAGCGGAGTGGCAT 61.802 63.158 9.55 0.00 34.64 4.40
785 847 1.455959 GGAGGAAGGAGCTAGCGGA 60.456 63.158 9.55 0.00 0.00 5.54
791 853 4.722535 TGGCGGGAGGAAGGAGCT 62.723 66.667 0.00 0.00 0.00 4.09
829 891 3.130164 CCTGATGGATAGATACGGCTGAG 59.870 52.174 0.00 0.00 34.57 3.35
895 961 1.594293 GGCTAGTGTGTGTGCGTGT 60.594 57.895 0.00 0.00 0.00 4.49
897 963 1.145156 TTGGCTAGTGTGTGTGCGT 59.855 52.632 0.00 0.00 0.00 5.24
898 964 1.569493 GTTGGCTAGTGTGTGTGCG 59.431 57.895 0.00 0.00 0.00 5.34
899 965 1.569493 CGTTGGCTAGTGTGTGTGC 59.431 57.895 0.00 0.00 0.00 4.57
900 966 1.841663 GCCGTTGGCTAGTGTGTGTG 61.842 60.000 0.00 0.00 46.69 3.82
925 991 3.665825 TAAGGCGTACGTGCGTCGG 62.666 63.158 26.31 0.00 44.69 4.79
926 992 1.726845 CTTAAGGCGTACGTGCGTCG 61.727 60.000 26.31 8.35 41.85 5.12
927 993 0.730494 ACTTAAGGCGTACGTGCGTC 60.730 55.000 23.24 23.24 36.64 5.19
952 1762 0.389391 ATGGCCACGTAGAAGATCGG 59.611 55.000 8.16 0.00 0.00 4.18
987 1797 0.659957 GCGCCATGATTCTGACCTTC 59.340 55.000 0.00 0.00 0.00 3.46
990 1800 0.462581 TGAGCGCCATGATTCTGACC 60.463 55.000 2.29 0.00 0.00 4.02
991 1801 1.590932 ATGAGCGCCATGATTCTGAC 58.409 50.000 2.29 0.00 33.39 3.51
1044 1854 2.945398 CTACGAAGGCGAGGCAGAGC 62.945 65.000 0.00 0.00 41.64 4.09
1212 2034 2.682494 AGGAAGAGCGGGCCGTAA 60.682 61.111 28.82 0.00 0.00 3.18
1517 2354 2.125912 CGTTGACTGCTCCCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
1629 2486 1.410517 TCGGTGAGCTCCTTCATCATC 59.589 52.381 12.15 0.00 0.00 2.92
1732 2592 2.799371 CTCAGCCGTCGTCCTACC 59.201 66.667 0.00 0.00 0.00 3.18
1741 2601 2.986413 ACTGTCGAGCTCAGCCGT 60.986 61.111 15.40 5.21 36.50 5.68
1901 2764 7.282224 TGGTTCTTAATCGAATTACCAAGATGG 59.718 37.037 0.00 0.00 45.02 3.51
1919 2782 3.019564 GAGTAGTAGGCCGTGGTTCTTA 58.980 50.000 0.00 0.00 0.00 2.10
1938 2805 2.054232 TTACGGAGGGAGTAGCAGAG 57.946 55.000 0.00 0.00 0.00 3.35
1948 2815 4.940463 TGATCGAATTAGTTTACGGAGGG 58.060 43.478 0.00 0.00 0.00 4.30
1950 2817 7.751047 TTCTTGATCGAATTAGTTTACGGAG 57.249 36.000 0.00 0.00 0.00 4.63
1951 2818 7.977293 TGATTCTTGATCGAATTAGTTTACGGA 59.023 33.333 0.00 0.00 37.60 4.69
1952 2819 8.056571 GTGATTCTTGATCGAATTAGTTTACGG 58.943 37.037 0.00 0.00 37.60 4.02
1953 2820 8.808529 AGTGATTCTTGATCGAATTAGTTTACG 58.191 33.333 0.00 0.00 37.60 3.18
1956 2823 9.653287 TGTAGTGATTCTTGATCGAATTAGTTT 57.347 29.630 0.00 0.00 37.60 2.66
1957 2824 9.307121 CTGTAGTGATTCTTGATCGAATTAGTT 57.693 33.333 0.00 0.00 37.60 2.24
1958 2825 8.470805 ACTGTAGTGATTCTTGATCGAATTAGT 58.529 33.333 0.00 0.72 37.60 2.24
1959 2826 8.864069 ACTGTAGTGATTCTTGATCGAATTAG 57.136 34.615 0.00 0.00 37.60 1.73
2000 2867 9.490083 AACAGTACTCCCTCTGTAAACTAATAT 57.510 33.333 0.00 0.00 42.95 1.28
2001 2868 8.746530 CAACAGTACTCCCTCTGTAAACTAATA 58.253 37.037 0.00 0.00 42.95 0.98
2002 2869 7.234988 ACAACAGTACTCCCTCTGTAAACTAAT 59.765 37.037 0.00 0.00 42.95 1.73
2003 2870 6.552350 ACAACAGTACTCCCTCTGTAAACTAA 59.448 38.462 0.00 0.00 42.95 2.24
2004 2871 6.073314 ACAACAGTACTCCCTCTGTAAACTA 58.927 40.000 0.00 0.00 42.95 2.24
2005 2872 4.900054 ACAACAGTACTCCCTCTGTAAACT 59.100 41.667 0.00 0.00 42.95 2.66
2006 2873 5.211174 ACAACAGTACTCCCTCTGTAAAC 57.789 43.478 0.00 0.00 42.95 2.01
2007 2874 6.239402 GGTTACAACAGTACTCCCTCTGTAAA 60.239 42.308 0.00 0.00 42.95 2.01
2008 2875 5.244626 GGTTACAACAGTACTCCCTCTGTAA 59.755 44.000 0.00 0.55 42.95 2.41
2009 2876 4.768968 GGTTACAACAGTACTCCCTCTGTA 59.231 45.833 0.00 0.00 42.95 2.74
2010 2877 3.577415 GGTTACAACAGTACTCCCTCTGT 59.423 47.826 0.00 0.00 45.21 3.41
2011 2878 3.833070 AGGTTACAACAGTACTCCCTCTG 59.167 47.826 0.00 0.00 37.65 3.35
2012 2879 4.129317 AGGTTACAACAGTACTCCCTCT 57.871 45.455 0.00 0.00 0.00 3.69
2013 2880 4.142204 GCTAGGTTACAACAGTACTCCCTC 60.142 50.000 0.00 0.00 0.00 4.30
2014 2881 3.768215 GCTAGGTTACAACAGTACTCCCT 59.232 47.826 0.00 0.00 0.00 4.20
2015 2882 3.512724 TGCTAGGTTACAACAGTACTCCC 59.487 47.826 0.00 0.00 0.00 4.30
2016 2883 4.492611 GTGCTAGGTTACAACAGTACTCC 58.507 47.826 0.00 0.00 0.00 3.85
2017 2884 4.021719 TGGTGCTAGGTTACAACAGTACTC 60.022 45.833 0.00 0.00 0.00 2.59
2018 2885 3.899360 TGGTGCTAGGTTACAACAGTACT 59.101 43.478 0.00 0.00 0.00 2.73
2019 2886 4.261578 TGGTGCTAGGTTACAACAGTAC 57.738 45.455 0.00 0.00 0.00 2.73
2020 2887 5.492855 AATGGTGCTAGGTTACAACAGTA 57.507 39.130 0.00 0.00 36.82 2.74
2021 2888 4.367039 AATGGTGCTAGGTTACAACAGT 57.633 40.909 0.00 0.00 36.82 3.55
2022 2889 4.332819 GCTAATGGTGCTAGGTTACAACAG 59.667 45.833 0.00 0.00 36.82 3.16
2023 2890 4.258543 GCTAATGGTGCTAGGTTACAACA 58.741 43.478 0.00 0.00 38.00 3.33
2024 2891 4.258543 TGCTAATGGTGCTAGGTTACAAC 58.741 43.478 0.00 0.00 0.00 3.32
2025 2892 4.561500 TGCTAATGGTGCTAGGTTACAA 57.438 40.909 0.00 0.00 0.00 2.41
2041 2908 2.483014 AACACGTGGGCTATTGCTAA 57.517 45.000 21.57 0.00 39.59 3.09
2079 2947 4.724074 ATAAACATGTCCTGCAATGTGG 57.276 40.909 0.00 0.00 0.00 4.17
2098 2966 0.107066 TCGTGTCCGTGCCTCCTATA 60.107 55.000 0.00 0.00 35.01 1.31
2157 3026 5.244626 CACCTTCTCCATTTCTGTTGGATTT 59.755 40.000 0.00 0.00 42.26 2.17
2165 3034 2.094854 GCTTGCACCTTCTCCATTTCTG 60.095 50.000 0.00 0.00 0.00 3.02
2175 3044 0.250467 TCACCTCTGCTTGCACCTTC 60.250 55.000 0.00 0.00 0.00 3.46
2226 3095 1.034838 TCTCGAGCTCCTCCTCAAGC 61.035 60.000 7.81 0.00 38.84 4.01
2241 3110 0.673437 GGAGGAGGCTCATCTTCTCG 59.327 60.000 26.20 0.00 39.69 4.04
2277 3146 1.734137 CGGATGTAGCCGTAGTGCT 59.266 57.895 0.00 0.00 46.07 4.40
2443 3312 2.438434 GGCCCTGTCCATGAACCG 60.438 66.667 0.00 0.00 0.00 4.44
2470 3339 3.937447 CCGGGGATCCTTACCGCC 61.937 72.222 19.32 7.31 45.93 6.13
2475 3344 2.332117 GGTATGAACCGGGGATCCTTA 58.668 52.381 12.58 0.00 35.62 2.69
2539 3408 2.743928 GAGTTCCACCAGCCGCAG 60.744 66.667 0.00 0.00 0.00 5.18
2549 3418 1.684450 TGTTCGCTAGTGTGAGTTCCA 59.316 47.619 2.66 0.00 33.90 3.53
2553 3422 3.056536 ACATCATGTTCGCTAGTGTGAGT 60.057 43.478 2.66 0.00 33.90 3.41
2608 3477 1.550976 GACCTCGAATGACTCTGGGTT 59.449 52.381 0.00 0.00 30.08 4.11
2613 3482 2.160205 TCAACGACCTCGAATGACTCT 58.840 47.619 0.78 0.00 43.02 3.24
2622 3491 2.810486 GTTGGACTCAACGACCTCG 58.190 57.895 0.00 0.00 42.99 4.63
2679 3548 5.144692 TGCATGCTTATAAAGGTTTTGCA 57.855 34.783 20.33 0.00 35.42 4.08
2703 3572 2.223641 TGGTACATTCATCGTCTACGCC 60.224 50.000 0.00 0.00 39.60 5.68
2705 3574 3.369385 GGTGGTACATTCATCGTCTACG 58.631 50.000 0.00 0.00 44.52 3.51
2708 3577 2.097036 TCGGTGGTACATTCATCGTCT 58.903 47.619 3.69 0.00 44.52 4.18
2749 3623 5.299279 CCTTCGGTATCATAGCCAAAACAAT 59.701 40.000 0.00 0.00 0.00 2.71
2820 3695 8.834465 GGATACTTCATACTTCTACGTGACTAA 58.166 37.037 0.00 0.00 0.00 2.24
2821 3696 7.989170 TGGATACTTCATACTTCTACGTGACTA 59.011 37.037 0.00 0.00 37.61 2.59
2838 3713 2.113777 TCCCTCCCCCTATGGATACTTC 59.886 54.545 0.00 0.00 35.39 3.01
2839 3714 2.114506 CTCCCTCCCCCTATGGATACTT 59.885 54.545 0.00 0.00 35.39 2.24
2842 3717 2.181493 TCTCCCTCCCCCTATGGATA 57.819 55.000 0.00 0.00 35.39 2.59
2843 3718 1.153132 CTTCTCCCTCCCCCTATGGAT 59.847 57.143 0.00 0.00 35.39 3.41
2844 3719 0.568192 CTTCTCCCTCCCCCTATGGA 59.432 60.000 0.00 0.00 35.39 3.41
2848 3723 0.254638 TCTCCTTCTCCCTCCCCCTA 60.255 60.000 0.00 0.00 0.00 3.53
2862 3737 0.912006 GGCTCCAACCTCCTTCTCCT 60.912 60.000 0.00 0.00 0.00 3.69
2868 3743 2.612115 CTGGGGCTCCAACCTCCT 60.612 66.667 6.84 0.00 43.51 3.69
2883 3758 0.179936 GTCTCCAATGAGCTCCCCTG 59.820 60.000 12.15 5.56 38.58 4.45
2915 3790 0.955905 GGCCTTAACCTGCGAAAACA 59.044 50.000 0.00 0.00 0.00 2.83
2920 3795 4.770874 GGCGGCCTTAACCTGCGA 62.771 66.667 12.87 0.00 32.35 5.10
2935 3810 3.237741 CATCGAGGAGGGAGGGGC 61.238 72.222 0.00 0.00 0.00 5.80
3008 4199 3.828875 AGCTTGTAGGTCCAATCTAGC 57.171 47.619 0.00 0.00 0.00 3.42
3097 4288 4.331717 ACTTACCGACGAATAAAATGCCTG 59.668 41.667 0.00 0.00 0.00 4.85
3152 4343 3.252701 GCGATGATTCCAAGAGCATGATT 59.747 43.478 0.00 0.00 0.00 2.57
3162 4353 1.581934 GACATCCGCGATGATTCCAA 58.418 50.000 20.36 0.00 42.09 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.