Multiple sequence alignment - TraesCS1A01G241000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G241000 chr1A 100.000 5599 0 0 1 5599 428545431 428551029 0.000000e+00 10340.0
1 TraesCS1A01G241000 chr1A 90.298 907 60 4 4704 5599 524601829 524602718 0.000000e+00 1162.0
2 TraesCS1A01G241000 chr1A 91.471 809 56 1 4791 5599 505738523 505737728 0.000000e+00 1099.0
3 TraesCS1A01G241000 chr1A 76.517 511 105 11 414 916 577806240 577805737 1.200000e-66 265.0
4 TraesCS1A01G241000 chr1A 74.414 512 112 14 413 914 58465056 58465558 9.510000e-48 202.0
5 TraesCS1A01G241000 chr1A 85.938 64 8 1 738 800 561231525 561231588 3.620000e-07 67.6
6 TraesCS1A01G241000 chr1D 93.622 3810 146 34 917 4706 331300878 331304610 0.000000e+00 5600.0
7 TraesCS1A01G241000 chr1D 88.119 303 18 8 1 286 331300582 331300883 1.490000e-90 344.0
8 TraesCS1A01G241000 chr1B 92.822 3817 205 41 917 4706 445742378 445746152 0.000000e+00 5467.0
9 TraesCS1A01G241000 chr1B 89.503 905 67 8 4706 5599 593811868 593810981 0.000000e+00 1120.0
10 TraesCS1A01G241000 chr1B 87.444 892 94 3 4706 5597 18860269 18859396 0.000000e+00 1011.0
11 TraesCS1A01G241000 chr1B 83.775 906 116 15 4701 5599 427969437 427968556 0.000000e+00 830.0
12 TraesCS1A01G241000 chr1B 97.436 39 1 0 248 286 445742345 445742383 3.620000e-07 67.6
13 TraesCS1A01G241000 chrUn 92.503 907 42 4 4706 5599 10474206 10475099 0.000000e+00 1275.0
14 TraesCS1A01G241000 chrUn 88.975 907 68 9 4704 5599 77046956 77047841 0.000000e+00 1092.0
15 TraesCS1A01G241000 chrUn 88.619 905 77 8 4706 5599 27611216 27612105 0.000000e+00 1077.0
16 TraesCS1A01G241000 chrUn 75.726 482 99 12 444 915 34698734 34698261 5.640000e-55 226.0
17 TraesCS1A01G241000 chr6D 89.625 906 64 8 4706 5599 39780233 39781120 0.000000e+00 1125.0
18 TraesCS1A01G241000 chr6D 88.994 318 34 1 528 844 313190596 313190279 5.260000e-105 392.0
19 TraesCS1A01G241000 chr3B 89.503 905 67 6 4706 5599 52712011 52712898 0.000000e+00 1120.0
20 TraesCS1A01G241000 chr3B 75.486 514 107 13 413 916 767761434 767761938 3.370000e-57 233.0
21 TraesCS1A01G241000 chr6A 90.041 723 57 3 4878 5599 49926710 49927418 0.000000e+00 922.0
22 TraesCS1A01G241000 chr2B 84.684 901 115 11 4705 5599 627134213 627135096 0.000000e+00 878.0
23 TraesCS1A01G241000 chr2B 84.268 909 117 13 4698 5599 712780906 712781795 0.000000e+00 863.0
24 TraesCS1A01G241000 chr2B 84.385 903 114 14 4705 5599 785969473 785970356 0.000000e+00 861.0
25 TraesCS1A01G241000 chr4B 84.479 902 115 12 4705 5599 460600683 460601566 0.000000e+00 867.0
26 TraesCS1A01G241000 chr7B 84.462 901 115 12 4706 5599 23382909 23383791 0.000000e+00 865.0
27 TraesCS1A01G241000 chr7B 75.947 449 89 13 478 916 61047823 61047384 4.390000e-51 213.0
28 TraesCS1A01G241000 chr3A 83.987 918 125 10 4687 5599 119382406 119383306 0.000000e+00 861.0
29 TraesCS1A01G241000 chr7A 84.240 901 117 12 4706 5599 9721039 9721921 0.000000e+00 854.0
30 TraesCS1A01G241000 chr6B 75.591 508 107 13 415 914 114963415 114963913 9.380000e-58 235.0
31 TraesCS1A01G241000 chr6B 75.192 520 110 13 413 922 120331981 120332491 1.570000e-55 228.0
32 TraesCS1A01G241000 chr5D 76.200 479 89 19 441 907 486290392 486290857 4.360000e-56 230.0
33 TraesCS1A01G241000 chr7D 77.017 409 82 9 514 916 46895075 46895477 2.030000e-54 224.0
34 TraesCS1A01G241000 chr7D 76.883 385 78 7 537 916 619010837 619010459 2.040000e-49 207.0
35 TraesCS1A01G241000 chr2D 76.303 422 88 9 499 915 598610197 598610611 1.220000e-51 215.0
36 TraesCS1A01G241000 chr3D 78.241 216 40 4 694 907 552949377 552949167 1.270000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G241000 chr1A 428545431 428551029 5598 False 10340.0 10340 100.0000 1 5599 1 chr1A.!!$F2 5598
1 TraesCS1A01G241000 chr1A 524601829 524602718 889 False 1162.0 1162 90.2980 4704 5599 1 chr1A.!!$F3 895
2 TraesCS1A01G241000 chr1A 505737728 505738523 795 True 1099.0 1099 91.4710 4791 5599 1 chr1A.!!$R1 808
3 TraesCS1A01G241000 chr1A 577805737 577806240 503 True 265.0 265 76.5170 414 916 1 chr1A.!!$R2 502
4 TraesCS1A01G241000 chr1A 58465056 58465558 502 False 202.0 202 74.4140 413 914 1 chr1A.!!$F1 501
5 TraesCS1A01G241000 chr1D 331300582 331304610 4028 False 2972.0 5600 90.8705 1 4706 2 chr1D.!!$F1 4705
6 TraesCS1A01G241000 chr1B 445742345 445746152 3807 False 2767.3 5467 95.1290 248 4706 2 chr1B.!!$F1 4458
7 TraesCS1A01G241000 chr1B 593810981 593811868 887 True 1120.0 1120 89.5030 4706 5599 1 chr1B.!!$R3 893
8 TraesCS1A01G241000 chr1B 18859396 18860269 873 True 1011.0 1011 87.4440 4706 5597 1 chr1B.!!$R1 891
9 TraesCS1A01G241000 chr1B 427968556 427969437 881 True 830.0 830 83.7750 4701 5599 1 chr1B.!!$R2 898
10 TraesCS1A01G241000 chrUn 10474206 10475099 893 False 1275.0 1275 92.5030 4706 5599 1 chrUn.!!$F1 893
11 TraesCS1A01G241000 chrUn 77046956 77047841 885 False 1092.0 1092 88.9750 4704 5599 1 chrUn.!!$F3 895
12 TraesCS1A01G241000 chrUn 27611216 27612105 889 False 1077.0 1077 88.6190 4706 5599 1 chrUn.!!$F2 893
13 TraesCS1A01G241000 chr6D 39780233 39781120 887 False 1125.0 1125 89.6250 4706 5599 1 chr6D.!!$F1 893
14 TraesCS1A01G241000 chr3B 52712011 52712898 887 False 1120.0 1120 89.5030 4706 5599 1 chr3B.!!$F1 893
15 TraesCS1A01G241000 chr3B 767761434 767761938 504 False 233.0 233 75.4860 413 916 1 chr3B.!!$F2 503
16 TraesCS1A01G241000 chr6A 49926710 49927418 708 False 922.0 922 90.0410 4878 5599 1 chr6A.!!$F1 721
17 TraesCS1A01G241000 chr2B 627134213 627135096 883 False 878.0 878 84.6840 4705 5599 1 chr2B.!!$F1 894
18 TraesCS1A01G241000 chr2B 712780906 712781795 889 False 863.0 863 84.2680 4698 5599 1 chr2B.!!$F2 901
19 TraesCS1A01G241000 chr2B 785969473 785970356 883 False 861.0 861 84.3850 4705 5599 1 chr2B.!!$F3 894
20 TraesCS1A01G241000 chr4B 460600683 460601566 883 False 867.0 867 84.4790 4705 5599 1 chr4B.!!$F1 894
21 TraesCS1A01G241000 chr7B 23382909 23383791 882 False 865.0 865 84.4620 4706 5599 1 chr7B.!!$F1 893
22 TraesCS1A01G241000 chr3A 119382406 119383306 900 False 861.0 861 83.9870 4687 5599 1 chr3A.!!$F1 912
23 TraesCS1A01G241000 chr7A 9721039 9721921 882 False 854.0 854 84.2400 4706 5599 1 chr7A.!!$F1 893
24 TraesCS1A01G241000 chr6B 120331981 120332491 510 False 228.0 228 75.1920 413 922 1 chr6B.!!$F2 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 377 0.034767 CCTTGAGGAGCTTGGCATCA 60.035 55.000 0.00 0.00 37.39 3.07 F
362 380 0.179065 TGAGGAGCTTGGCATCATCG 60.179 55.000 0.00 0.00 0.00 3.84 F
408 426 0.249911 AGAACTGTCCCACAAGTCGC 60.250 55.000 0.00 0.00 0.00 5.19 F
410 428 0.249911 AACTGTCCCACAAGTCGCTC 60.250 55.000 0.00 0.00 0.00 5.03 F
512 533 0.251354 GGCTGTGCAGAGATGAAGGA 59.749 55.000 16.28 0.00 0.00 3.36 F
536 557 0.324368 ACTACATGGGGAGCTCGACA 60.324 55.000 7.83 9.55 0.00 4.35 F
1103 1127 0.621862 CTCCTCCCCTAAACCCTGCT 60.622 60.000 0.00 0.00 0.00 4.24 F
1716 1749 1.407437 GCCCAGTGGACAGGAATAGTG 60.407 57.143 11.95 0.00 0.00 2.74 F
2381 2425 2.111613 TGTCACCCAATTCCCTTTCCAT 59.888 45.455 0.00 0.00 0.00 3.41 F
3215 3265 2.026169 GCCTACTTAAAAGCAGGTCCCT 60.026 50.000 10.09 0.00 40.95 4.20 F
3764 3817 0.670162 GCACCCACATCCATGCATAC 59.330 55.000 0.00 0.00 38.00 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1264 1295 0.034616 GGATGGGCTTGGATCTCTCG 59.965 60.000 0.00 0.00 0.00 4.04 R
1888 1921 0.539986 GGGCAAACCTATCGTCTGGA 59.460 55.000 0.00 0.00 35.85 3.86 R
2088 2121 0.607217 TGACACCTCTGGCTGCAATG 60.607 55.000 0.50 0.00 0.00 2.82 R
2365 2409 3.198417 CCAGAAATGGAAAGGGAATTGGG 59.802 47.826 0.00 0.00 0.00 4.12 R
2451 2495 4.344968 TCACAGAGTTGATCAGAAACAGGA 59.655 41.667 0.00 0.00 0.00 3.86 R
2480 2524 5.243730 TGTCAAAGGAAATCATGAAACTCCC 59.756 40.000 14.39 6.28 0.00 4.30 R
2630 2674 1.592081 CTACAGATCTCAAAGCTGCGC 59.408 52.381 0.00 0.00 33.03 6.09 R
3167 3217 0.039074 AGACAGTTTCGGCAGACTCG 60.039 55.000 0.00 0.00 0.00 4.18 R
3497 3550 0.323360 GCCCACCACTAAATCCTGCA 60.323 55.000 0.00 0.00 0.00 4.41 R
4499 4556 0.576798 CCGTGTGTGCTACATATGCG 59.423 55.000 1.58 0.00 42.24 4.73 R
5259 5331 0.322975 CGATCCAAGGAGGGCTATGG 59.677 60.000 0.00 0.00 38.24 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 88 4.873746 AAAAGACGAAGATGACCAGAGA 57.126 40.909 0.00 0.00 0.00 3.10
84 89 3.859411 AAGACGAAGATGACCAGAGAC 57.141 47.619 0.00 0.00 0.00 3.36
86 91 3.426615 AGACGAAGATGACCAGAGACTT 58.573 45.455 0.00 0.00 0.00 3.01
87 92 3.829601 AGACGAAGATGACCAGAGACTTT 59.170 43.478 0.00 0.00 0.00 2.66
88 93 5.010933 AGACGAAGATGACCAGAGACTTTA 58.989 41.667 0.00 0.00 0.00 1.85
89 94 5.124776 AGACGAAGATGACCAGAGACTTTAG 59.875 44.000 0.00 0.00 0.00 1.85
90 95 4.109050 CGAAGATGACCAGAGACTTTAGC 58.891 47.826 0.00 0.00 0.00 3.09
91 96 4.142271 CGAAGATGACCAGAGACTTTAGCT 60.142 45.833 0.00 0.00 0.00 3.32
92 97 4.734398 AGATGACCAGAGACTTTAGCTG 57.266 45.455 0.00 0.00 0.00 4.24
93 98 4.093011 AGATGACCAGAGACTTTAGCTGT 58.907 43.478 0.00 0.00 0.00 4.40
102 120 4.774726 AGAGACTTTAGCTGTGAAGATCCA 59.225 41.667 11.72 0.00 0.00 3.41
114 132 1.354368 GAAGATCCAAGGTTCCCCACA 59.646 52.381 0.00 0.00 0.00 4.17
117 135 0.631212 ATCCAAGGTTCCCCACATCC 59.369 55.000 0.00 0.00 0.00 3.51
118 136 0.477597 TCCAAGGTTCCCCACATCCT 60.478 55.000 0.00 0.00 0.00 3.24
194 212 4.514401 GGTACCTTTCTCAATCCATTCGT 58.486 43.478 4.06 0.00 0.00 3.85
196 214 3.262420 ACCTTTCTCAATCCATTCGTCG 58.738 45.455 0.00 0.00 0.00 5.12
280 298 4.510038 AGCTGAATTTTCTTCGCACATT 57.490 36.364 0.00 0.00 0.00 2.71
281 299 4.874970 AGCTGAATTTTCTTCGCACATTT 58.125 34.783 0.00 0.00 0.00 2.32
282 300 4.682860 AGCTGAATTTTCTTCGCACATTTG 59.317 37.500 0.00 0.00 0.00 2.32
283 301 4.664891 GCTGAATTTTCTTCGCACATTTGC 60.665 41.667 0.00 0.00 46.21 3.68
293 311 3.778969 CACATTTGCATGCACGAGT 57.221 47.368 22.58 15.74 33.05 4.18
294 312 1.609932 CACATTTGCATGCACGAGTC 58.390 50.000 22.58 0.00 33.05 3.36
295 313 1.069091 CACATTTGCATGCACGAGTCA 60.069 47.619 22.58 0.52 33.05 3.41
296 314 1.608109 ACATTTGCATGCACGAGTCAA 59.392 42.857 22.58 11.56 33.05 3.18
297 315 2.229543 ACATTTGCATGCACGAGTCAAT 59.770 40.909 22.58 13.53 33.05 2.57
298 316 3.247442 CATTTGCATGCACGAGTCAATT 58.753 40.909 22.58 0.00 0.00 2.32
299 317 3.367992 TTTGCATGCACGAGTCAATTT 57.632 38.095 22.58 0.00 0.00 1.82
300 318 3.367992 TTGCATGCACGAGTCAATTTT 57.632 38.095 22.58 0.00 0.00 1.82
301 319 2.932498 TGCATGCACGAGTCAATTTTC 58.068 42.857 18.46 0.00 0.00 2.29
302 320 2.253603 GCATGCACGAGTCAATTTTCC 58.746 47.619 14.21 0.00 0.00 3.13
303 321 2.351641 GCATGCACGAGTCAATTTTCCA 60.352 45.455 14.21 0.00 0.00 3.53
304 322 3.495193 CATGCACGAGTCAATTTTCCAG 58.505 45.455 0.00 0.00 0.00 3.86
305 323 2.844946 TGCACGAGTCAATTTTCCAGA 58.155 42.857 0.00 0.00 0.00 3.86
306 324 2.807967 TGCACGAGTCAATTTTCCAGAG 59.192 45.455 0.00 0.00 0.00 3.35
307 325 2.413371 GCACGAGTCAATTTTCCAGAGC 60.413 50.000 0.00 0.00 0.00 4.09
308 326 2.160417 CACGAGTCAATTTTCCAGAGCC 59.840 50.000 0.00 0.00 0.00 4.70
309 327 1.740025 CGAGTCAATTTTCCAGAGCCC 59.260 52.381 0.00 0.00 0.00 5.19
310 328 2.616510 CGAGTCAATTTTCCAGAGCCCT 60.617 50.000 0.00 0.00 0.00 5.19
311 329 3.013219 GAGTCAATTTTCCAGAGCCCTC 58.987 50.000 0.00 0.00 0.00 4.30
312 330 2.376518 AGTCAATTTTCCAGAGCCCTCA 59.623 45.455 0.00 0.00 0.00 3.86
313 331 3.157087 GTCAATTTTCCAGAGCCCTCAA 58.843 45.455 0.00 0.00 0.00 3.02
314 332 3.192212 GTCAATTTTCCAGAGCCCTCAAG 59.808 47.826 0.00 0.00 0.00 3.02
315 333 1.844687 ATTTTCCAGAGCCCTCAAGC 58.155 50.000 0.00 0.00 0.00 4.01
317 335 1.656587 TTTCCAGAGCCCTCAAGCTA 58.343 50.000 0.00 0.00 45.15 3.32
318 336 1.885049 TTCCAGAGCCCTCAAGCTAT 58.115 50.000 0.00 0.00 45.15 2.97
319 337 1.885049 TCCAGAGCCCTCAAGCTATT 58.115 50.000 0.00 0.00 45.15 1.73
320 338 1.765314 TCCAGAGCCCTCAAGCTATTC 59.235 52.381 0.00 0.00 45.15 1.75
321 339 1.487976 CCAGAGCCCTCAAGCTATTCA 59.512 52.381 0.00 0.00 45.15 2.57
322 340 2.106166 CCAGAGCCCTCAAGCTATTCAT 59.894 50.000 0.00 0.00 45.15 2.57
323 341 3.326006 CCAGAGCCCTCAAGCTATTCATA 59.674 47.826 0.00 0.00 45.15 2.15
324 342 4.563168 CCAGAGCCCTCAAGCTATTCATAG 60.563 50.000 0.00 0.00 45.15 2.23
325 343 4.040217 CAGAGCCCTCAAGCTATTCATAGT 59.960 45.833 0.00 0.00 45.15 2.12
326 344 4.657969 AGAGCCCTCAAGCTATTCATAGTT 59.342 41.667 0.00 0.00 45.15 2.24
327 345 5.131809 AGAGCCCTCAAGCTATTCATAGTTT 59.868 40.000 0.00 0.00 45.15 2.66
328 346 5.372373 AGCCCTCAAGCTATTCATAGTTTC 58.628 41.667 0.00 0.00 42.70 2.78
329 347 5.104360 AGCCCTCAAGCTATTCATAGTTTCA 60.104 40.000 0.00 0.00 42.70 2.69
330 348 5.767168 GCCCTCAAGCTATTCATAGTTTCAT 59.233 40.000 0.00 0.00 32.50 2.57
331 349 6.264067 GCCCTCAAGCTATTCATAGTTTCATT 59.736 38.462 0.00 0.00 32.50 2.57
332 350 7.646314 CCCTCAAGCTATTCATAGTTTCATTG 58.354 38.462 0.00 0.00 32.50 2.82
333 351 7.255381 CCCTCAAGCTATTCATAGTTTCATTGG 60.255 40.741 0.00 0.00 32.50 3.16
334 352 7.031226 TCAAGCTATTCATAGTTTCATTGGC 57.969 36.000 0.00 0.00 32.50 4.52
335 353 6.602803 TCAAGCTATTCATAGTTTCATTGGCA 59.397 34.615 0.00 0.00 32.50 4.92
336 354 6.630444 AGCTATTCATAGTTTCATTGGCAG 57.370 37.500 0.00 0.00 32.96 4.85
337 355 6.359804 AGCTATTCATAGTTTCATTGGCAGA 58.640 36.000 0.00 0.00 32.96 4.26
338 356 7.002879 AGCTATTCATAGTTTCATTGGCAGAT 58.997 34.615 0.00 0.00 32.96 2.90
339 357 7.504911 AGCTATTCATAGTTTCATTGGCAGATT 59.495 33.333 0.00 0.00 32.96 2.40
340 358 7.806960 GCTATTCATAGTTTCATTGGCAGATTC 59.193 37.037 0.00 0.00 32.96 2.52
341 359 6.455360 TTCATAGTTTCATTGGCAGATTCC 57.545 37.500 0.00 0.00 0.00 3.01
342 360 5.759059 TCATAGTTTCATTGGCAGATTCCT 58.241 37.500 0.00 0.00 0.00 3.36
343 361 6.189859 TCATAGTTTCATTGGCAGATTCCTT 58.810 36.000 0.00 0.00 0.00 3.36
344 362 4.796038 AGTTTCATTGGCAGATTCCTTG 57.204 40.909 0.00 0.00 0.00 3.61
345 363 4.410099 AGTTTCATTGGCAGATTCCTTGA 58.590 39.130 0.00 0.00 0.00 3.02
346 364 4.461781 AGTTTCATTGGCAGATTCCTTGAG 59.538 41.667 0.00 0.00 0.00 3.02
347 365 3.008835 TCATTGGCAGATTCCTTGAGG 57.991 47.619 0.00 0.00 0.00 3.86
348 366 2.577563 TCATTGGCAGATTCCTTGAGGA 59.422 45.455 0.00 0.00 43.73 3.71
349 367 2.795231 TTGGCAGATTCCTTGAGGAG 57.205 50.000 0.00 0.00 46.36 3.69
350 368 0.254178 TGGCAGATTCCTTGAGGAGC 59.746 55.000 0.00 0.52 46.36 4.70
351 369 0.545646 GGCAGATTCCTTGAGGAGCT 59.454 55.000 8.37 0.00 46.36 4.09
352 370 1.064832 GGCAGATTCCTTGAGGAGCTT 60.065 52.381 8.37 0.00 46.36 3.74
353 371 2.015587 GCAGATTCCTTGAGGAGCTTG 58.984 52.381 0.00 1.98 46.36 4.01
354 372 2.641305 CAGATTCCTTGAGGAGCTTGG 58.359 52.381 0.00 0.00 46.36 3.61
355 373 1.064832 AGATTCCTTGAGGAGCTTGGC 60.065 52.381 0.00 0.00 46.36 4.52
356 374 0.700564 ATTCCTTGAGGAGCTTGGCA 59.299 50.000 0.00 0.00 46.36 4.92
357 375 0.700564 TTCCTTGAGGAGCTTGGCAT 59.299 50.000 0.00 0.00 46.36 4.40
358 376 0.254178 TCCTTGAGGAGCTTGGCATC 59.746 55.000 0.00 0.00 39.78 3.91
359 377 0.034767 CCTTGAGGAGCTTGGCATCA 60.035 55.000 0.00 0.00 37.39 3.07
360 378 1.409802 CCTTGAGGAGCTTGGCATCAT 60.410 52.381 0.00 0.00 37.39 2.45
361 379 1.948145 CTTGAGGAGCTTGGCATCATC 59.052 52.381 0.00 0.00 0.00 2.92
362 380 0.179065 TGAGGAGCTTGGCATCATCG 60.179 55.000 0.00 0.00 0.00 3.84
363 381 0.883814 GAGGAGCTTGGCATCATCGG 60.884 60.000 0.00 0.00 0.00 4.18
364 382 1.146930 GGAGCTTGGCATCATCGGA 59.853 57.895 0.00 0.00 0.00 4.55
365 383 0.464373 GGAGCTTGGCATCATCGGAA 60.464 55.000 0.00 0.00 0.00 4.30
366 384 1.382522 GAGCTTGGCATCATCGGAAA 58.617 50.000 0.00 0.00 0.00 3.13
367 385 1.064654 GAGCTTGGCATCATCGGAAAC 59.935 52.381 0.00 0.00 0.00 2.78
368 386 0.810648 GCTTGGCATCATCGGAAACA 59.189 50.000 0.00 0.00 0.00 2.83
369 387 1.202222 GCTTGGCATCATCGGAAACAG 60.202 52.381 0.00 0.00 0.00 3.16
370 388 1.402968 CTTGGCATCATCGGAAACAGG 59.597 52.381 0.00 0.00 0.00 4.00
371 389 1.031571 TGGCATCATCGGAAACAGGC 61.032 55.000 0.00 0.00 0.00 4.85
372 390 1.031571 GGCATCATCGGAAACAGGCA 61.032 55.000 0.00 0.00 0.00 4.75
373 391 0.810648 GCATCATCGGAAACAGGCAA 59.189 50.000 0.00 0.00 0.00 4.52
374 392 1.406539 GCATCATCGGAAACAGGCAAT 59.593 47.619 0.00 0.00 0.00 3.56
375 393 2.159198 GCATCATCGGAAACAGGCAATT 60.159 45.455 0.00 0.00 0.00 2.32
376 394 3.066621 GCATCATCGGAAACAGGCAATTA 59.933 43.478 0.00 0.00 0.00 1.40
377 395 4.439974 GCATCATCGGAAACAGGCAATTAA 60.440 41.667 0.00 0.00 0.00 1.40
378 396 5.649557 CATCATCGGAAACAGGCAATTAAA 58.350 37.500 0.00 0.00 0.00 1.52
379 397 5.054390 TCATCGGAAACAGGCAATTAAAC 57.946 39.130 0.00 0.00 0.00 2.01
380 398 4.520874 TCATCGGAAACAGGCAATTAAACA 59.479 37.500 0.00 0.00 0.00 2.83
381 399 4.231718 TCGGAAACAGGCAATTAAACAC 57.768 40.909 0.00 0.00 0.00 3.32
382 400 3.632604 TCGGAAACAGGCAATTAAACACA 59.367 39.130 0.00 0.00 0.00 3.72
383 401 4.279671 TCGGAAACAGGCAATTAAACACAT 59.720 37.500 0.00 0.00 0.00 3.21
384 402 4.621034 CGGAAACAGGCAATTAAACACATC 59.379 41.667 0.00 0.00 0.00 3.06
385 403 5.564651 CGGAAACAGGCAATTAAACACATCT 60.565 40.000 0.00 0.00 0.00 2.90
386 404 5.634859 GGAAACAGGCAATTAAACACATCTG 59.365 40.000 0.00 0.00 0.00 2.90
387 405 5.789643 AACAGGCAATTAAACACATCTGT 57.210 34.783 0.00 0.00 36.00 3.41
388 406 6.892658 AACAGGCAATTAAACACATCTGTA 57.107 33.333 0.00 0.00 34.35 2.74
389 407 6.892658 ACAGGCAATTAAACACATCTGTAA 57.107 33.333 0.00 0.00 33.20 2.41
390 408 6.913170 ACAGGCAATTAAACACATCTGTAAG 58.087 36.000 0.00 0.00 33.20 2.34
404 422 4.336889 TCTGTAAGAACTGTCCCACAAG 57.663 45.455 0.00 0.00 42.31 3.16
405 423 3.709653 TCTGTAAGAACTGTCCCACAAGT 59.290 43.478 0.00 0.00 42.31 3.16
406 424 4.058817 CTGTAAGAACTGTCCCACAAGTC 58.941 47.826 0.00 0.00 34.07 3.01
407 425 2.240493 AAGAACTGTCCCACAAGTCG 57.760 50.000 0.00 0.00 0.00 4.18
408 426 0.249911 AGAACTGTCCCACAAGTCGC 60.250 55.000 0.00 0.00 0.00 5.19
409 427 0.249911 GAACTGTCCCACAAGTCGCT 60.250 55.000 0.00 0.00 0.00 4.93
410 428 0.249911 AACTGTCCCACAAGTCGCTC 60.250 55.000 0.00 0.00 0.00 5.03
411 429 1.367471 CTGTCCCACAAGTCGCTCA 59.633 57.895 0.00 0.00 0.00 4.26
420 438 0.883833 CAAGTCGCTCAAAGGCCAAT 59.116 50.000 5.01 0.00 0.00 3.16
463 481 5.744171 TGTAAGATACATGTTGATGCAGGT 58.256 37.500 2.30 0.00 37.20 4.00
466 484 4.194640 AGATACATGTTGATGCAGGTGTC 58.805 43.478 2.30 0.00 40.08 3.67
472 490 1.307355 TTGATGCAGGTGTCATGGCG 61.307 55.000 0.00 0.00 0.00 5.69
473 491 2.438975 ATGCAGGTGTCATGGCGG 60.439 61.111 0.00 0.00 0.00 6.13
476 495 2.436646 CAGGTGTCATGGCGGGAC 60.437 66.667 0.00 1.80 35.83 4.46
480 499 2.606213 TGTCATGGCGGGACAGGA 60.606 61.111 6.92 0.00 40.16 3.86
492 511 1.617947 GGACAGGAAGGATCGGCAGT 61.618 60.000 0.00 0.00 0.00 4.40
493 512 0.460987 GACAGGAAGGATCGGCAGTG 60.461 60.000 0.00 0.00 0.00 3.66
512 533 0.251354 GGCTGTGCAGAGATGAAGGA 59.749 55.000 16.28 0.00 0.00 3.36
534 555 1.480954 GAAACTACATGGGGAGCTCGA 59.519 52.381 7.83 0.00 0.00 4.04
536 557 0.324368 ACTACATGGGGAGCTCGACA 60.324 55.000 7.83 9.55 0.00 4.35
539 560 1.194781 ACATGGGGAGCTCGACACTT 61.195 55.000 7.83 0.00 0.00 3.16
543 564 0.951040 GGGGAGCTCGACACTTGTTG 60.951 60.000 7.83 0.00 0.00 3.33
554 575 3.195661 GACACTTGTTGTCGAAGGAGTT 58.804 45.455 0.00 0.00 45.33 3.01
555 576 3.195661 ACACTTGTTGTCGAAGGAGTTC 58.804 45.455 0.00 0.00 29.79 3.01
557 578 3.809832 CACTTGTTGTCGAAGGAGTTCAT 59.190 43.478 0.00 0.00 32.36 2.57
569 590 2.750237 GTTCATGACCCGGCCACC 60.750 66.667 2.24 0.00 0.00 4.61
572 593 3.776781 CATGACCCGGCCACCGTA 61.777 66.667 2.24 0.00 46.80 4.02
578 599 4.077184 CCGGCCACCGTAGAAGCA 62.077 66.667 2.24 0.00 46.80 3.91
584 605 1.583054 CCACCGTAGAAGCAATAGCC 58.417 55.000 0.00 0.00 43.56 3.93
590 611 2.481969 CGTAGAAGCAATAGCCTGCAGA 60.482 50.000 17.39 0.00 45.18 4.26
611 632 0.977108 AGGCTCTCTCCCTTGCAGAG 60.977 60.000 0.00 0.00 39.11 3.35
621 642 3.965539 CTTGCAGAGGACCTGGGCG 62.966 68.421 0.00 0.00 43.13 6.13
638 659 2.794350 GGGCGTTCAGAATTTTGTTGTG 59.206 45.455 0.00 0.00 0.00 3.33
641 662 3.705604 CGTTCAGAATTTTGTTGTGGCT 58.294 40.909 0.00 0.00 0.00 4.75
659 680 0.883833 CTTCGGATTGCCAGCAAGTT 59.116 50.000 11.21 0.00 39.47 2.66
665 686 2.157738 GATTGCCAGCAAGTTGTCTCT 58.842 47.619 11.21 0.00 39.47 3.10
675 696 4.454847 AGCAAGTTGTCTCTGACATCAATG 59.545 41.667 4.48 9.38 42.40 2.82
680 701 4.897509 TGTCTCTGACATCAATGGAAGT 57.102 40.909 0.00 0.00 37.67 3.01
681 702 4.572909 TGTCTCTGACATCAATGGAAGTG 58.427 43.478 0.00 0.00 37.67 3.16
685 706 1.805943 TGACATCAATGGAAGTGCACG 59.194 47.619 12.01 0.00 0.00 5.34
686 707 1.131126 GACATCAATGGAAGTGCACGG 59.869 52.381 12.01 0.00 0.00 4.94
689 710 1.603455 CAATGGAAGTGCACGGGGT 60.603 57.895 12.01 0.00 0.00 4.95
701 722 0.747644 CACGGGGTGCATATGAAGCA 60.748 55.000 14.81 0.00 40.19 3.91
710 731 4.277672 GGTGCATATGAAGCAATCATCACT 59.722 41.667 6.97 0.00 45.91 3.41
724 745 9.023962 AGCAATCATCACTGAAATAAACCTTAA 57.976 29.630 0.00 0.00 34.37 1.85
725 746 9.294030 GCAATCATCACTGAAATAAACCTTAAG 57.706 33.333 0.00 0.00 34.37 1.85
729 750 7.450014 TCATCACTGAAATAAACCTTAAGGCAA 59.550 33.333 21.92 7.45 39.32 4.52
730 751 7.775053 TCACTGAAATAAACCTTAAGGCAAT 57.225 32.000 21.92 9.51 39.32 3.56
733 754 9.353999 CACTGAAATAAACCTTAAGGCAATTAC 57.646 33.333 21.92 8.48 39.32 1.89
734 755 9.309224 ACTGAAATAAACCTTAAGGCAATTACT 57.691 29.630 21.92 6.00 39.32 2.24
801 823 6.405278 AGCACATAGTTTAGCCAAGTTTTT 57.595 33.333 0.00 0.00 0.00 1.94
802 824 7.519032 AGCACATAGTTTAGCCAAGTTTTTA 57.481 32.000 0.00 0.00 0.00 1.52
805 827 7.865889 GCACATAGTTTAGCCAAGTTTTTACTT 59.134 33.333 0.00 0.00 0.00 2.24
820 842 8.208575 AGTTTTTACTTTCTAGAGGTCCAGAT 57.791 34.615 4.11 0.00 0.00 2.90
827 849 2.238898 TCTAGAGGTCCAGATCGTCACA 59.761 50.000 0.00 0.00 0.00 3.58
835 857 4.250464 GTCCAGATCGTCACATTTGGTTA 58.750 43.478 0.00 0.00 31.25 2.85
837 859 4.221924 TCCAGATCGTCACATTTGGTTAGA 59.778 41.667 0.00 0.00 31.25 2.10
844 866 4.932799 CGTCACATTTGGTTAGATGTACCA 59.067 41.667 0.00 0.00 43.71 3.25
848 870 6.945435 TCACATTTGGTTAGATGTACCACATT 59.055 34.615 0.00 0.00 45.00 2.71
850 872 8.902806 CACATTTGGTTAGATGTACCACATTAT 58.097 33.333 0.00 0.00 45.00 1.28
869 891 8.906867 CACATTATCAAAGATGTATCCCACTTT 58.093 33.333 0.00 0.00 34.88 2.66
907 929 9.938280 GCTTTATAAATAAACTTGGTTTTCCCT 57.062 29.630 0.00 0.00 37.01 4.20
1025 1049 4.704833 TGCCTCTCACAAGCCGCC 62.705 66.667 0.00 0.00 0.00 6.13
1086 1110 2.734673 CGCGCTGCTTCTTCCACTC 61.735 63.158 5.56 0.00 0.00 3.51
1103 1127 0.621862 CTCCTCCCCTAAACCCTGCT 60.622 60.000 0.00 0.00 0.00 4.24
1129 1153 2.607750 ACCCCACGGTGCTCATCT 60.608 61.111 1.68 0.00 42.48 2.90
1214 1244 2.271800 ACCTGAATCGAATCGAACTGC 58.728 47.619 10.12 0.00 39.99 4.40
1219 1250 3.125146 TGAATCGAATCGAACTGCTTTGG 59.875 43.478 10.12 0.00 39.99 3.28
1264 1295 4.154347 CTGAGGGAGGACTGGCGC 62.154 72.222 0.00 0.00 0.00 6.53
1435 1466 5.236911 TCCATGTTTTTCTTCTTTGCATTGC 59.763 36.000 0.46 0.46 0.00 3.56
1445 1476 1.999735 CTTTGCATTGCCATTGCTCTG 59.000 47.619 12.30 0.02 40.77 3.35
1521 1552 2.285743 GGAGGGGCAGGAAGGACT 60.286 66.667 0.00 0.00 0.00 3.85
1605 1636 5.334879 CCTGTTCAAGGTTTCATTTACCGAG 60.335 44.000 0.00 0.00 41.74 4.63
1613 1644 3.973206 TTCATTTACCGAGCTTCTCCA 57.027 42.857 0.00 0.00 0.00 3.86
1614 1645 4.487714 TTCATTTACCGAGCTTCTCCAT 57.512 40.909 0.00 0.00 0.00 3.41
1615 1646 4.487714 TCATTTACCGAGCTTCTCCATT 57.512 40.909 0.00 0.00 0.00 3.16
1616 1647 4.442706 TCATTTACCGAGCTTCTCCATTC 58.557 43.478 0.00 0.00 0.00 2.67
1617 1648 3.973206 TTTACCGAGCTTCTCCATTCA 57.027 42.857 0.00 0.00 0.00 2.57
1621 1652 3.274288 ACCGAGCTTCTCCATTCAATTC 58.726 45.455 0.00 0.00 0.00 2.17
1680 1711 2.094675 CCAGCTTGGTTTACCTCCATG 58.905 52.381 0.00 0.00 34.75 3.66
1716 1749 1.407437 GCCCAGTGGACAGGAATAGTG 60.407 57.143 11.95 0.00 0.00 2.74
1761 1794 6.127281 TGCTGAAATCAAATATGGTTGATGCT 60.127 34.615 3.87 0.00 45.42 3.79
1888 1921 7.886629 ATTTATTACCACAATCTGCAGTGAT 57.113 32.000 14.67 0.00 37.97 3.06
1949 1982 7.293745 CAGGTATAGTCGAATTGATCAATTGC 58.706 38.462 32.89 22.72 40.77 3.56
1960 1993 5.988310 TTGATCAATTGCCAGTTTCATCT 57.012 34.783 3.38 0.00 0.00 2.90
1964 1997 5.534207 TCAATTGCCAGTTTCATCTGTTT 57.466 34.783 0.00 0.00 34.02 2.83
1995 2028 3.559238 GTGTGTAGCACTTGGAATTGG 57.441 47.619 0.90 0.00 44.41 3.16
2002 2035 6.821665 GTGTAGCACTTGGAATTGGTCTATTA 59.178 38.462 0.00 0.00 0.00 0.98
2009 2042 8.960591 CACTTGGAATTGGTCTATTATCAGTTT 58.039 33.333 0.00 0.00 0.00 2.66
2088 2121 2.563179 TGCTAGGACACCAGAAGAAGTC 59.437 50.000 0.00 0.00 0.00 3.01
2195 2237 8.236585 TCATGCTATATACTTTGCCATTGTTT 57.763 30.769 0.00 0.00 0.00 2.83
2338 2382 7.510675 TGTTCAGAGATTTTTCTATACCCCT 57.489 36.000 0.00 0.00 0.00 4.79
2343 2387 9.447279 TCAGAGATTTTTCTATACCCCTATTCA 57.553 33.333 0.00 0.00 0.00 2.57
2365 2409 7.214467 TCAAGGGACTGAAAATTTATGTCAC 57.786 36.000 15.30 13.03 40.86 3.67
2381 2425 2.111613 TGTCACCCAATTCCCTTTCCAT 59.888 45.455 0.00 0.00 0.00 3.41
2429 2473 3.991773 GCCAAAGACGTTACACTATGACA 59.008 43.478 0.00 0.00 0.00 3.58
2439 2483 6.018751 ACGTTACACTATGACATCATGATTGC 60.019 38.462 5.16 1.41 37.15 3.56
2449 2493 4.466827 ACATCATGATTGCTGCCTCATAA 58.533 39.130 5.16 1.98 31.05 1.90
2451 2495 5.538813 ACATCATGATTGCTGCCTCATAAAT 59.461 36.000 5.16 8.23 31.05 1.40
2480 2524 6.609237 TTCTGATCAACTCTGTGAAAACTG 57.391 37.500 0.00 0.00 0.00 3.16
2940 2985 5.010922 TCTCCCATTTTGGAACAGTTTCATG 59.989 40.000 0.00 0.00 40.96 3.07
2949 2994 7.459795 TTGGAACAGTTTCATGCATGTAATA 57.540 32.000 25.43 4.01 42.39 0.98
3060 3106 5.883673 TGTTTTCCTTTCCCGATTTCGATAT 59.116 36.000 0.67 0.00 43.02 1.63
3061 3107 6.183360 TGTTTTCCTTTCCCGATTTCGATATG 60.183 38.462 0.67 0.00 43.02 1.78
3065 3115 2.163818 TCCCGATTTCGATATGTGGC 57.836 50.000 0.67 0.00 43.02 5.01
3085 3135 4.202315 TGGCAGTGTTGTATAACTGTGAGT 60.202 41.667 3.89 0.00 44.59 3.41
3089 3139 7.222224 GGCAGTGTTGTATAACTGTGAGTATAC 59.778 40.741 3.89 0.00 44.59 1.47
3163 3213 7.825270 CACCCACCTGTTTGTAGTATTATACAA 59.175 37.037 5.11 0.00 42.42 2.41
3202 3252 6.360370 AACTGTCTCTTCATTGCCTACTTA 57.640 37.500 0.00 0.00 0.00 2.24
3215 3265 2.026169 GCCTACTTAAAAGCAGGTCCCT 60.026 50.000 10.09 0.00 40.95 4.20
3286 3336 3.243873 TGCTACAGGTATGCTATGCTCAC 60.244 47.826 0.00 0.00 0.00 3.51
3342 3393 3.607741 AGTCAGGCATCACTCTCAAATG 58.392 45.455 0.00 0.00 0.00 2.32
3345 3396 3.008266 TCAGGCATCACTCTCAAATGTCA 59.992 43.478 0.00 0.00 0.00 3.58
3414 3465 2.750350 CTTGGCGGTGAGGTTCCT 59.250 61.111 0.00 0.00 0.00 3.36
3454 3507 9.586435 CTTTTCTGTTTCTATTCCAACAGTTTT 57.414 29.630 10.90 0.00 46.76 2.43
3455 3508 9.581099 TTTTCTGTTTCTATTCCAACAGTTTTC 57.419 29.630 10.90 0.00 46.76 2.29
3484 3537 7.378181 CCTTGCATATGGAAAACTAAAAGTGT 58.622 34.615 11.06 0.00 0.00 3.55
3497 3550 6.267496 ACTAAAAGTGTCTGTTGCAAAAGT 57.733 33.333 16.28 0.00 0.00 2.66
3616 3669 5.301805 ACAAATTTAACCAGCTAGCTGTTGT 59.698 36.000 36.14 31.71 42.15 3.32
3744 3797 1.459592 CGCCAACAGTTAGCAGTGTAC 59.540 52.381 4.52 0.00 35.31 2.90
3764 3817 0.670162 GCACCCACATCCATGCATAC 59.330 55.000 0.00 0.00 38.00 2.39
3784 3837 3.323729 CAAGTGCACTTGTGTACTGTG 57.676 47.619 39.48 20.32 46.11 3.66
3805 3858 3.527253 TGGGGTAGGATTCATTGTGTGAT 59.473 43.478 0.00 0.00 36.54 3.06
3806 3859 4.017591 TGGGGTAGGATTCATTGTGTGATT 60.018 41.667 0.00 0.00 36.54 2.57
3830 3883 3.595709 TTTTCGTGTCAACCGATGTTC 57.404 42.857 0.00 0.00 33.81 3.18
3831 3884 1.133407 TTCGTGTCAACCGATGTTCG 58.867 50.000 0.00 0.00 40.07 3.95
3889 3942 1.270518 ACAGTGAAAGCTGACGATGCT 60.271 47.619 0.00 0.00 43.32 3.79
3939 3992 3.386078 TGGTGTTCCTTATTTTGCAGCAA 59.614 39.130 2.83 2.83 32.55 3.91
3977 4030 6.317140 TGCTTGGATCTGACTAAAATGTGATC 59.683 38.462 0.00 0.00 0.00 2.92
4015 4068 1.177401 CAGGAAAAGGCCCTGCTAAC 58.823 55.000 0.00 0.00 43.93 2.34
4072 4125 3.260884 TCCTGCTAAACCTGGTTAGTGAG 59.739 47.826 13.37 9.07 34.20 3.51
4361 4418 9.525409 CGATATATATGAAGTGCTCATGAATGA 57.475 33.333 0.00 0.00 44.84 2.57
4436 4493 2.858158 GCGTACAACAAGGACGGC 59.142 61.111 1.78 0.00 37.08 5.68
4496 4553 3.918591 GTGTATTGTATCATACCTCCGCG 59.081 47.826 0.00 0.00 0.00 6.46
4499 4556 3.631145 TTGTATCATACCTCCGCGTAC 57.369 47.619 4.92 0.00 0.00 3.67
4540 4597 2.293677 CCACGCGATCCTTGTAGATAGT 59.706 50.000 15.93 0.00 0.00 2.12
4541 4598 3.501062 CCACGCGATCCTTGTAGATAGTA 59.499 47.826 15.93 0.00 0.00 1.82
4542 4599 4.465016 CACGCGATCCTTGTAGATAGTAC 58.535 47.826 15.93 0.00 0.00 2.73
4543 4600 4.213694 CACGCGATCCTTGTAGATAGTACT 59.786 45.833 15.93 0.00 0.00 2.73
4544 4601 4.213694 ACGCGATCCTTGTAGATAGTACTG 59.786 45.833 15.93 0.00 0.00 2.74
4570 4627 9.405587 GTATTAGCAAGCAAAACAAATAGTGAA 57.594 29.630 0.00 0.00 0.00 3.18
4670 4727 1.703438 GCAGCAGGCTCAACGATCAG 61.703 60.000 0.00 0.00 40.25 2.90
4827 4899 6.326843 GGAACAATATAGTCTAACACCCTCCT 59.673 42.308 0.00 0.00 0.00 3.69
4844 4916 3.944015 CCTCCTTCAATCTTAGCCACTTG 59.056 47.826 0.00 0.00 0.00 3.16
4963 5035 7.238486 AGAGATGAACTTGATCTGTAGTTGT 57.762 36.000 11.45 3.18 34.88 3.32
5021 5093 2.055838 CTTCGATGTGTTTCGTTCGGA 58.944 47.619 0.00 0.00 40.03 4.55
5035 5107 1.937899 GTTCGGACATGAAATACCGGG 59.062 52.381 6.32 0.00 42.71 5.73
5085 5157 4.015872 TGTCACACCAAAGAATAGGACC 57.984 45.455 0.00 0.00 0.00 4.46
5086 5158 3.392947 TGTCACACCAAAGAATAGGACCA 59.607 43.478 0.00 0.00 0.00 4.02
5087 5159 4.141367 TGTCACACCAAAGAATAGGACCAA 60.141 41.667 0.00 0.00 0.00 3.67
5088 5160 4.825085 GTCACACCAAAGAATAGGACCAAA 59.175 41.667 0.00 0.00 0.00 3.28
5089 5161 5.048713 GTCACACCAAAGAATAGGACCAAAG 60.049 44.000 0.00 0.00 0.00 2.77
5090 5162 5.070001 CACACCAAAGAATAGGACCAAAGA 58.930 41.667 0.00 0.00 0.00 2.52
5091 5163 5.534654 CACACCAAAGAATAGGACCAAAGAA 59.465 40.000 0.00 0.00 0.00 2.52
5092 5164 6.209391 CACACCAAAGAATAGGACCAAAGAAT 59.791 38.462 0.00 0.00 0.00 2.40
5093 5165 7.393234 CACACCAAAGAATAGGACCAAAGAATA 59.607 37.037 0.00 0.00 0.00 1.75
5094 5166 7.611855 ACACCAAAGAATAGGACCAAAGAATAG 59.388 37.037 0.00 0.00 0.00 1.73
5095 5167 7.067494 CACCAAAGAATAGGACCAAAGAATAGG 59.933 40.741 0.00 0.00 0.00 2.57
5096 5168 7.036863 ACCAAAGAATAGGACCAAAGAATAGGA 60.037 37.037 0.00 0.00 0.00 2.94
5097 5169 7.500559 CCAAAGAATAGGACCAAAGAATAGGAG 59.499 40.741 0.00 0.00 0.00 3.69
5152 5224 8.814038 AGCAAAGACTGTATCCAGATAATTTT 57.186 30.769 0.00 0.00 41.50 1.82
5247 5319 2.366916 CTCCAGGCGATCAAGGTAGAAT 59.633 50.000 0.00 0.00 0.00 2.40
5259 5331 6.861065 TCAAGGTAGAATCAAAGAACACAC 57.139 37.500 0.00 0.00 0.00 3.82
5271 5343 0.912486 GAACACACCATAGCCCTCCT 59.088 55.000 0.00 0.00 0.00 3.69
5300 5372 2.685017 TCATCCGGACTGCCAGCT 60.685 61.111 6.12 0.00 0.00 4.24
5347 5419 1.305046 TCCCAGAGGAGTTCGGTCC 60.305 63.158 0.00 0.00 37.19 4.46
5446 5518 2.169352 GTGCCTGGAGATACTGACACAT 59.831 50.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 73 4.109050 GCTAAAGTCTCTGGTCATCTTCG 58.891 47.826 0.00 0.00 0.00 3.79
76 81 3.898123 TCTTCACAGCTAAAGTCTCTGGT 59.102 43.478 0.00 0.00 32.42 4.00
82 87 4.633565 CCTTGGATCTTCACAGCTAAAGTC 59.366 45.833 0.00 0.00 0.00 3.01
83 88 4.042187 ACCTTGGATCTTCACAGCTAAAGT 59.958 41.667 0.00 0.00 0.00 2.66
84 89 4.583871 ACCTTGGATCTTCACAGCTAAAG 58.416 43.478 0.00 0.00 0.00 1.85
86 91 4.565652 GGAACCTTGGATCTTCACAGCTAA 60.566 45.833 0.00 0.00 0.00 3.09
87 92 3.055094 GGAACCTTGGATCTTCACAGCTA 60.055 47.826 0.00 0.00 0.00 3.32
88 93 2.290577 GGAACCTTGGATCTTCACAGCT 60.291 50.000 0.00 0.00 0.00 4.24
89 94 2.087646 GGAACCTTGGATCTTCACAGC 58.912 52.381 0.00 0.00 0.00 4.40
102 120 2.358195 GCATTAGGATGTGGGGAACCTT 60.358 50.000 0.00 0.00 41.56 3.50
135 153 2.837031 GAATTTCTGGCCCCCTCGCA 62.837 60.000 0.00 0.00 0.00 5.10
175 193 3.262420 CGACGAATGGATTGAGAAAGGT 58.738 45.455 0.00 0.00 0.00 3.50
180 198 0.179084 GCCCGACGAATGGATTGAGA 60.179 55.000 0.00 0.00 0.00 3.27
194 212 1.272872 ACCACTTCTACTAAGGCCCGA 60.273 52.381 0.00 0.00 0.00 5.14
196 214 1.485480 GGACCACTTCTACTAAGGCCC 59.515 57.143 0.00 0.00 0.00 5.80
280 298 3.307674 GAAAATTGACTCGTGCATGCAA 58.692 40.909 24.58 6.97 0.00 4.08
281 299 2.351641 GGAAAATTGACTCGTGCATGCA 60.352 45.455 18.46 18.46 0.00 3.96
282 300 2.253603 GGAAAATTGACTCGTGCATGC 58.746 47.619 11.82 11.82 0.00 4.06
283 301 3.189080 TCTGGAAAATTGACTCGTGCATG 59.811 43.478 0.00 0.00 0.00 4.06
284 302 3.411446 TCTGGAAAATTGACTCGTGCAT 58.589 40.909 0.00 0.00 0.00 3.96
285 303 2.807967 CTCTGGAAAATTGACTCGTGCA 59.192 45.455 0.00 0.00 0.00 4.57
286 304 2.413371 GCTCTGGAAAATTGACTCGTGC 60.413 50.000 0.00 0.00 0.00 5.34
287 305 2.160417 GGCTCTGGAAAATTGACTCGTG 59.840 50.000 0.00 0.00 0.00 4.35
288 306 2.427506 GGCTCTGGAAAATTGACTCGT 58.572 47.619 0.00 0.00 0.00 4.18
289 307 1.740025 GGGCTCTGGAAAATTGACTCG 59.260 52.381 0.00 0.00 0.00 4.18
290 308 3.013219 GAGGGCTCTGGAAAATTGACTC 58.987 50.000 0.00 0.00 0.00 3.36
291 309 2.376518 TGAGGGCTCTGGAAAATTGACT 59.623 45.455 0.00 0.00 0.00 3.41
292 310 2.795329 TGAGGGCTCTGGAAAATTGAC 58.205 47.619 0.00 0.00 0.00 3.18
293 311 3.424703 CTTGAGGGCTCTGGAAAATTGA 58.575 45.455 0.00 0.00 0.00 2.57
294 312 2.094338 GCTTGAGGGCTCTGGAAAATTG 60.094 50.000 0.00 0.00 0.00 2.32
295 313 2.174360 GCTTGAGGGCTCTGGAAAATT 58.826 47.619 0.00 0.00 0.00 1.82
296 314 1.357079 AGCTTGAGGGCTCTGGAAAAT 59.643 47.619 0.00 0.00 38.24 1.82
297 315 0.773644 AGCTTGAGGGCTCTGGAAAA 59.226 50.000 0.00 0.00 38.24 2.29
298 316 1.656587 TAGCTTGAGGGCTCTGGAAA 58.343 50.000 0.00 0.00 42.97 3.13
299 317 1.885049 ATAGCTTGAGGGCTCTGGAA 58.115 50.000 0.00 0.00 42.97 3.53
300 318 1.765314 GAATAGCTTGAGGGCTCTGGA 59.235 52.381 0.00 0.00 42.97 3.86
301 319 1.487976 TGAATAGCTTGAGGGCTCTGG 59.512 52.381 0.00 0.00 42.97 3.86
302 320 2.996249 TGAATAGCTTGAGGGCTCTG 57.004 50.000 0.00 0.00 42.97 3.35
303 321 4.230455 ACTATGAATAGCTTGAGGGCTCT 58.770 43.478 0.00 0.00 42.97 4.09
304 322 4.615588 ACTATGAATAGCTTGAGGGCTC 57.384 45.455 0.00 0.00 42.97 4.70
305 323 5.104360 TGAAACTATGAATAGCTTGAGGGCT 60.104 40.000 0.00 0.00 45.29 5.19
306 324 5.126067 TGAAACTATGAATAGCTTGAGGGC 58.874 41.667 0.00 0.00 33.68 5.19
307 325 7.255381 CCAATGAAACTATGAATAGCTTGAGGG 60.255 40.741 0.00 0.00 33.68 4.30
308 326 7.646314 CCAATGAAACTATGAATAGCTTGAGG 58.354 38.462 0.00 0.00 33.68 3.86
309 327 7.137426 GCCAATGAAACTATGAATAGCTTGAG 58.863 38.462 0.00 0.00 33.68 3.02
310 328 6.602803 TGCCAATGAAACTATGAATAGCTTGA 59.397 34.615 0.00 0.00 33.68 3.02
311 329 6.798482 TGCCAATGAAACTATGAATAGCTTG 58.202 36.000 0.00 0.00 33.68 4.01
312 330 6.830324 TCTGCCAATGAAACTATGAATAGCTT 59.170 34.615 0.00 0.00 33.68 3.74
313 331 6.359804 TCTGCCAATGAAACTATGAATAGCT 58.640 36.000 0.00 0.00 33.68 3.32
314 332 6.624352 TCTGCCAATGAAACTATGAATAGC 57.376 37.500 0.00 0.00 33.68 2.97
315 333 8.295288 GGAATCTGCCAATGAAACTATGAATAG 58.705 37.037 0.00 0.00 36.46 1.73
316 334 8.000709 AGGAATCTGCCAATGAAACTATGAATA 58.999 33.333 0.00 0.00 0.00 1.75
317 335 6.837568 AGGAATCTGCCAATGAAACTATGAAT 59.162 34.615 0.00 0.00 0.00 2.57
318 336 6.189859 AGGAATCTGCCAATGAAACTATGAA 58.810 36.000 0.00 0.00 0.00 2.57
319 337 5.759059 AGGAATCTGCCAATGAAACTATGA 58.241 37.500 0.00 0.00 0.00 2.15
320 338 6.095860 TCAAGGAATCTGCCAATGAAACTATG 59.904 38.462 0.00 0.00 0.00 2.23
321 339 6.189859 TCAAGGAATCTGCCAATGAAACTAT 58.810 36.000 0.00 0.00 0.00 2.12
322 340 5.569355 TCAAGGAATCTGCCAATGAAACTA 58.431 37.500 0.00 0.00 0.00 2.24
323 341 4.410099 TCAAGGAATCTGCCAATGAAACT 58.590 39.130 0.00 0.00 0.00 2.66
324 342 4.381292 CCTCAAGGAATCTGCCAATGAAAC 60.381 45.833 0.00 0.00 37.39 2.78
325 343 3.765511 CCTCAAGGAATCTGCCAATGAAA 59.234 43.478 0.00 0.00 37.39 2.69
326 344 3.010472 TCCTCAAGGAATCTGCCAATGAA 59.990 43.478 0.00 0.00 42.18 2.57
327 345 2.577563 TCCTCAAGGAATCTGCCAATGA 59.422 45.455 0.00 0.00 42.18 2.57
328 346 2.950309 CTCCTCAAGGAATCTGCCAATG 59.050 50.000 0.00 0.00 44.91 2.82
329 347 2.686118 GCTCCTCAAGGAATCTGCCAAT 60.686 50.000 0.00 0.00 44.91 3.16
330 348 1.340405 GCTCCTCAAGGAATCTGCCAA 60.340 52.381 0.00 0.00 44.91 4.52
331 349 0.254178 GCTCCTCAAGGAATCTGCCA 59.746 55.000 0.00 0.00 44.91 4.92
332 350 0.545646 AGCTCCTCAAGGAATCTGCC 59.454 55.000 0.00 0.00 44.91 4.85
333 351 2.015587 CAAGCTCCTCAAGGAATCTGC 58.984 52.381 0.00 0.29 44.91 4.26
334 352 2.641305 CCAAGCTCCTCAAGGAATCTG 58.359 52.381 0.00 0.00 44.91 2.90
335 353 1.064832 GCCAAGCTCCTCAAGGAATCT 60.065 52.381 0.00 0.00 44.91 2.40
336 354 1.340405 TGCCAAGCTCCTCAAGGAATC 60.340 52.381 0.00 0.00 44.91 2.52
337 355 0.700564 TGCCAAGCTCCTCAAGGAAT 59.299 50.000 0.00 0.00 44.91 3.01
338 356 0.700564 ATGCCAAGCTCCTCAAGGAA 59.299 50.000 0.00 0.00 44.91 3.36
339 357 0.254178 GATGCCAAGCTCCTCAAGGA 59.746 55.000 0.00 0.00 43.08 3.36
340 358 0.034767 TGATGCCAAGCTCCTCAAGG 60.035 55.000 0.00 0.00 0.00 3.61
341 359 1.948145 GATGATGCCAAGCTCCTCAAG 59.052 52.381 0.00 0.00 0.00 3.02
342 360 1.744798 CGATGATGCCAAGCTCCTCAA 60.745 52.381 0.00 0.00 0.00 3.02
343 361 0.179065 CGATGATGCCAAGCTCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
344 362 0.883814 CCGATGATGCCAAGCTCCTC 60.884 60.000 0.00 0.00 0.00 3.71
345 363 1.147824 CCGATGATGCCAAGCTCCT 59.852 57.895 0.00 0.00 0.00 3.69
346 364 0.464373 TTCCGATGATGCCAAGCTCC 60.464 55.000 0.00 0.00 0.00 4.70
347 365 1.064654 GTTTCCGATGATGCCAAGCTC 59.935 52.381 0.00 0.00 0.00 4.09
348 366 1.098050 GTTTCCGATGATGCCAAGCT 58.902 50.000 0.00 0.00 0.00 3.74
349 367 0.810648 TGTTTCCGATGATGCCAAGC 59.189 50.000 0.00 0.00 0.00 4.01
350 368 1.402968 CCTGTTTCCGATGATGCCAAG 59.597 52.381 0.00 0.00 0.00 3.61
351 369 1.462616 CCTGTTTCCGATGATGCCAA 58.537 50.000 0.00 0.00 0.00 4.52
352 370 1.031571 GCCTGTTTCCGATGATGCCA 61.032 55.000 0.00 0.00 0.00 4.92
353 371 1.031571 TGCCTGTTTCCGATGATGCC 61.032 55.000 0.00 0.00 0.00 4.40
354 372 0.810648 TTGCCTGTTTCCGATGATGC 59.189 50.000 0.00 0.00 0.00 3.91
355 373 3.788333 AATTGCCTGTTTCCGATGATG 57.212 42.857 0.00 0.00 0.00 3.07
356 374 5.184864 TGTTTAATTGCCTGTTTCCGATGAT 59.815 36.000 0.00 0.00 0.00 2.45
357 375 4.520874 TGTTTAATTGCCTGTTTCCGATGA 59.479 37.500 0.00 0.00 0.00 2.92
358 376 4.621034 GTGTTTAATTGCCTGTTTCCGATG 59.379 41.667 0.00 0.00 0.00 3.84
359 377 4.279671 TGTGTTTAATTGCCTGTTTCCGAT 59.720 37.500 0.00 0.00 0.00 4.18
360 378 3.632604 TGTGTTTAATTGCCTGTTTCCGA 59.367 39.130 0.00 0.00 0.00 4.55
361 379 3.971150 TGTGTTTAATTGCCTGTTTCCG 58.029 40.909 0.00 0.00 0.00 4.30
362 380 5.634859 CAGATGTGTTTAATTGCCTGTTTCC 59.365 40.000 0.00 0.00 0.00 3.13
363 381 6.215845 ACAGATGTGTTTAATTGCCTGTTTC 58.784 36.000 0.00 0.00 30.30 2.78
364 382 6.160576 ACAGATGTGTTTAATTGCCTGTTT 57.839 33.333 0.00 0.00 30.30 2.83
365 383 5.789643 ACAGATGTGTTTAATTGCCTGTT 57.210 34.783 0.00 0.00 30.30 3.16
366 384 6.714810 TCTTACAGATGTGTTTAATTGCCTGT 59.285 34.615 0.00 0.00 38.19 4.00
367 385 7.144722 TCTTACAGATGTGTTTAATTGCCTG 57.855 36.000 0.00 0.00 38.19 4.85
368 386 7.448469 AGTTCTTACAGATGTGTTTAATTGCCT 59.552 33.333 0.00 0.00 38.19 4.75
369 387 7.538678 CAGTTCTTACAGATGTGTTTAATTGCC 59.461 37.037 0.00 0.00 38.19 4.52
370 388 8.076178 ACAGTTCTTACAGATGTGTTTAATTGC 58.924 33.333 0.00 0.00 38.19 3.56
371 389 9.599322 GACAGTTCTTACAGATGTGTTTAATTG 57.401 33.333 0.00 3.67 38.19 2.32
372 390 8.784043 GGACAGTTCTTACAGATGTGTTTAATT 58.216 33.333 0.00 0.00 38.19 1.40
373 391 7.390718 GGGACAGTTCTTACAGATGTGTTTAAT 59.609 37.037 0.00 0.00 38.19 1.40
374 392 6.708949 GGGACAGTTCTTACAGATGTGTTTAA 59.291 38.462 0.00 0.00 38.19 1.52
375 393 6.183361 TGGGACAGTTCTTACAGATGTGTTTA 60.183 38.462 0.00 0.00 38.19 2.01
376 394 5.063880 GGGACAGTTCTTACAGATGTGTTT 58.936 41.667 0.00 0.00 38.19 2.83
377 395 4.102524 TGGGACAGTTCTTACAGATGTGTT 59.897 41.667 0.00 0.00 38.19 3.32
378 396 3.646162 TGGGACAGTTCTTACAGATGTGT 59.354 43.478 0.00 0.00 41.06 3.72
379 397 3.997021 GTGGGACAGTTCTTACAGATGTG 59.003 47.826 0.00 0.00 41.80 3.21
380 398 3.646162 TGTGGGACAGTTCTTACAGATGT 59.354 43.478 0.00 0.00 41.80 3.06
381 399 4.271696 TGTGGGACAGTTCTTACAGATG 57.728 45.455 0.00 0.00 41.80 2.90
382 400 4.348168 ACTTGTGGGACAGTTCTTACAGAT 59.652 41.667 0.00 0.00 41.80 2.90
383 401 3.709653 ACTTGTGGGACAGTTCTTACAGA 59.290 43.478 0.00 0.00 41.80 3.41
384 402 4.058817 GACTTGTGGGACAGTTCTTACAG 58.941 47.826 0.00 0.00 41.80 2.74
385 403 3.491964 CGACTTGTGGGACAGTTCTTACA 60.492 47.826 0.00 0.00 41.80 2.41
386 404 3.057734 CGACTTGTGGGACAGTTCTTAC 58.942 50.000 0.00 0.00 41.80 2.34
387 405 2.547218 GCGACTTGTGGGACAGTTCTTA 60.547 50.000 0.00 0.00 41.80 2.10
388 406 1.810412 GCGACTTGTGGGACAGTTCTT 60.810 52.381 0.00 0.00 41.80 2.52
389 407 0.249911 GCGACTTGTGGGACAGTTCT 60.250 55.000 0.00 0.00 41.80 3.01
390 408 0.249911 AGCGACTTGTGGGACAGTTC 60.250 55.000 0.00 0.00 41.80 3.01
391 409 0.249911 GAGCGACTTGTGGGACAGTT 60.250 55.000 0.00 0.00 41.80 3.16
392 410 1.367840 GAGCGACTTGTGGGACAGT 59.632 57.895 0.00 0.00 41.80 3.55
393 411 0.249868 TTGAGCGACTTGTGGGACAG 60.250 55.000 0.00 0.00 41.80 3.51
394 412 0.179234 TTTGAGCGACTTGTGGGACA 59.821 50.000 0.00 0.00 0.00 4.02
395 413 0.868406 CTTTGAGCGACTTGTGGGAC 59.132 55.000 0.00 0.00 0.00 4.46
396 414 0.250295 CCTTTGAGCGACTTGTGGGA 60.250 55.000 0.00 0.00 0.00 4.37
397 415 1.856265 GCCTTTGAGCGACTTGTGGG 61.856 60.000 0.00 0.00 0.00 4.61
398 416 1.576421 GCCTTTGAGCGACTTGTGG 59.424 57.895 0.00 0.00 0.00 4.17
399 417 1.165907 TGGCCTTTGAGCGACTTGTG 61.166 55.000 3.32 0.00 0.00 3.33
400 418 0.465460 TTGGCCTTTGAGCGACTTGT 60.465 50.000 3.32 0.00 0.00 3.16
401 419 0.883833 ATTGGCCTTTGAGCGACTTG 59.116 50.000 3.32 0.00 0.00 3.16
402 420 0.883833 CATTGGCCTTTGAGCGACTT 59.116 50.000 3.32 0.00 0.00 3.01
403 421 0.036732 TCATTGGCCTTTGAGCGACT 59.963 50.000 3.32 0.00 0.00 4.18
404 422 0.881118 TTCATTGGCCTTTGAGCGAC 59.119 50.000 3.32 0.00 0.00 5.19
405 423 1.167851 CTTCATTGGCCTTTGAGCGA 58.832 50.000 3.32 0.00 0.00 4.93
406 424 0.457337 GCTTCATTGGCCTTTGAGCG 60.457 55.000 3.32 3.74 0.00 5.03
407 425 0.108472 GGCTTCATTGGCCTTTGAGC 60.108 55.000 3.32 11.70 45.57 4.26
430 448 1.760613 TGTATCTTACAGAAGCCCGGG 59.239 52.381 19.09 19.09 34.06 5.73
436 454 7.254692 CCTGCATCAACATGTATCTTACAGAAG 60.255 40.741 0.00 0.00 42.77 2.85
438 456 6.051074 CCTGCATCAACATGTATCTTACAGA 58.949 40.000 0.00 0.00 42.77 3.41
442 460 5.744171 ACACCTGCATCAACATGTATCTTA 58.256 37.500 0.00 0.00 31.86 2.10
463 481 2.184020 CTTCCTGTCCCGCCATGACA 62.184 60.000 0.00 0.00 40.28 3.58
466 484 1.987807 ATCCTTCCTGTCCCGCCATG 61.988 60.000 0.00 0.00 0.00 3.66
472 490 2.317149 CTGCCGATCCTTCCTGTCCC 62.317 65.000 0.00 0.00 0.00 4.46
473 491 1.144936 CTGCCGATCCTTCCTGTCC 59.855 63.158 0.00 0.00 0.00 4.02
476 495 1.153289 CCACTGCCGATCCTTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
480 499 2.270205 CAGCCACTGCCGATCCTT 59.730 61.111 0.00 0.00 38.69 3.36
492 511 0.035725 CCTTCATCTCTGCACAGCCA 60.036 55.000 0.00 0.00 0.00 4.75
493 512 0.251354 TCCTTCATCTCTGCACAGCC 59.749 55.000 0.00 0.00 0.00 4.85
512 533 1.840635 GAGCTCCCCATGTAGTTTCCT 59.159 52.381 0.87 0.00 0.00 3.36
534 555 2.981859 ACTCCTTCGACAACAAGTGT 57.018 45.000 0.00 0.00 45.74 3.55
536 557 3.536956 TGAACTCCTTCGACAACAAGT 57.463 42.857 0.00 0.00 0.00 3.16
539 560 3.390135 GTCATGAACTCCTTCGACAACA 58.610 45.455 0.00 0.00 0.00 3.33
543 564 1.736032 CGGGTCATGAACTCCTTCGAC 60.736 57.143 11.29 0.00 0.00 4.20
569 590 1.863454 CTGCAGGCTATTGCTTCTACG 59.137 52.381 5.57 0.00 44.38 3.51
570 591 3.129871 CTCTGCAGGCTATTGCTTCTAC 58.870 50.000 15.13 0.00 44.38 2.59
572 593 1.836166 TCTCTGCAGGCTATTGCTTCT 59.164 47.619 15.13 0.00 44.38 2.85
590 611 0.977108 CTGCAAGGGAGAGAGCCTCT 60.977 60.000 0.00 0.00 44.28 3.69
596 617 0.616111 GGTCCTCTGCAAGGGAGAGA 60.616 60.000 15.20 0.66 46.23 3.10
597 618 0.617249 AGGTCCTCTGCAAGGGAGAG 60.617 60.000 12.99 7.68 46.23 3.20
599 620 1.601171 CAGGTCCTCTGCAAGGGAG 59.399 63.158 12.99 5.04 46.23 4.30
611 632 0.322546 AATTCTGAACGCCCAGGTCC 60.323 55.000 5.04 0.00 35.10 4.46
621 642 4.207019 CGAAGCCACAACAAAATTCTGAAC 59.793 41.667 0.00 0.00 0.00 3.18
641 662 0.597568 CAACTTGCTGGCAATCCGAA 59.402 50.000 8.49 0.00 35.20 4.30
659 680 4.572909 CACTTCCATTGATGTCAGAGACA 58.427 43.478 1.95 1.95 46.90 3.41
665 686 1.805943 CGTGCACTTCCATTGATGTCA 59.194 47.619 16.19 0.00 0.00 3.58
685 706 2.309613 TGATTGCTTCATATGCACCCC 58.690 47.619 0.00 0.00 40.40 4.95
686 707 3.570975 TGATGATTGCTTCATATGCACCC 59.429 43.478 0.00 0.00 45.29 4.61
689 710 5.127491 TCAGTGATGATTGCTTCATATGCA 58.873 37.500 0.00 0.00 45.29 3.96
697 718 7.472334 AGGTTTATTTCAGTGATGATTGCTT 57.528 32.000 0.00 0.00 0.00 3.91
701 722 8.470002 GCCTTAAGGTTTATTTCAGTGATGATT 58.530 33.333 22.55 0.00 37.57 2.57
751 772 8.927721 TCATAATTAACAACACGATTCTCGAAA 58.072 29.630 3.20 0.00 43.74 3.46
759 781 7.139896 TGTGCTTCATAATTAACAACACGAT 57.860 32.000 0.00 0.00 0.00 3.73
801 823 5.113446 ACGATCTGGACCTCTAGAAAGTA 57.887 43.478 0.00 0.00 37.03 2.24
802 824 3.949113 GACGATCTGGACCTCTAGAAAGT 59.051 47.826 0.00 0.00 37.03 2.66
805 827 3.280295 GTGACGATCTGGACCTCTAGAA 58.720 50.000 0.00 0.00 37.03 2.10
820 842 5.172934 GGTACATCTAACCAAATGTGACGA 58.827 41.667 0.00 0.00 36.78 4.20
837 859 9.507329 GGATACATCTTTGATAATGTGGTACAT 57.493 33.333 0.00 0.00 44.52 2.29
848 870 9.559732 CACATAAAGTGGGATACATCTTTGATA 57.440 33.333 6.79 0.00 44.69 2.15
850 872 7.864108 CACATAAAGTGGGATACATCTTTGA 57.136 36.000 6.79 0.00 44.69 2.69
1086 1110 0.256177 GAAGCAGGGTTTAGGGGAGG 59.744 60.000 0.00 0.00 0.00 4.30
1103 1127 3.478780 CCGTGGGGTGAAGGAGAA 58.521 61.111 0.00 0.00 0.00 2.87
1126 1150 3.483869 GCTGGCGGGGAGGAAGAT 61.484 66.667 0.00 0.00 0.00 2.40
1160 1190 3.584733 AGGAATGGACTGGATTTAGGC 57.415 47.619 0.00 0.00 0.00 3.93
1264 1295 0.034616 GGATGGGCTTGGATCTCTCG 59.965 60.000 0.00 0.00 0.00 4.04
1435 1466 2.182842 GGCCGTAGCAGAGCAATGG 61.183 63.158 0.00 0.00 42.56 3.16
1445 1476 2.169146 ACGCGTTAATGGCCGTAGC 61.169 57.895 5.58 0.94 38.76 3.58
1521 1552 4.202315 CCCGTAGTACATTTCATCCATGGA 60.202 45.833 18.88 18.88 0.00 3.41
1605 1636 5.969423 TGAAATGGAATTGAATGGAGAAGC 58.031 37.500 0.00 0.00 36.10 3.86
1613 1644 5.031495 TGGTGGGATGAAATGGAATTGAAT 58.969 37.500 0.00 0.00 36.10 2.57
1614 1645 4.423913 TGGTGGGATGAAATGGAATTGAA 58.576 39.130 0.00 0.00 36.10 2.69
1615 1646 4.058417 TGGTGGGATGAAATGGAATTGA 57.942 40.909 0.00 0.00 36.10 2.57
1616 1647 6.460781 CATATGGTGGGATGAAATGGAATTG 58.539 40.000 0.00 0.00 36.10 2.32
1617 1648 5.012354 GCATATGGTGGGATGAAATGGAATT 59.988 40.000 4.56 0.00 38.98 2.17
1621 1652 3.232662 TGCATATGGTGGGATGAAATGG 58.767 45.455 4.56 0.00 0.00 3.16
1680 1711 3.641906 ACTGGGCTCCTACATGTGTATAC 59.358 47.826 9.11 0.00 0.00 1.47
1716 1749 3.740590 CATCTCAACTGCGATTGTTGTC 58.259 45.455 12.76 0.00 43.54 3.18
1761 1794 2.164624 GTGCCTTTGTACACAAACCACA 59.835 45.455 19.13 10.19 40.55 4.17
1888 1921 0.539986 GGGCAAACCTATCGTCTGGA 59.460 55.000 0.00 0.00 35.85 3.86
1931 1964 4.012374 ACTGGCAATTGATCAATTCGACT 58.988 39.130 27.08 7.19 38.84 4.18
1934 1967 5.162794 TGAAACTGGCAATTGATCAATTCG 58.837 37.500 27.08 22.08 38.84 3.34
1995 2028 8.908786 TGGGAATGATGAAACTGATAATAGAC 57.091 34.615 0.00 0.00 0.00 2.59
2002 2035 7.398047 TCAAAGAATGGGAATGATGAAACTGAT 59.602 33.333 0.00 0.00 0.00 2.90
2009 2042 8.635328 CATAACATCAAAGAATGGGAATGATGA 58.365 33.333 17.94 0.68 46.43 2.92
2024 2057 9.739276 ACTGAATCTTACTTCCATAACATCAAA 57.261 29.630 0.00 0.00 0.00 2.69
2088 2121 0.607217 TGACACCTCTGGCTGCAATG 60.607 55.000 0.50 0.00 0.00 2.82
2195 2237 4.892345 AGATCACAAGATACAGCAGCTAGA 59.108 41.667 0.00 0.00 33.72 2.43
2284 2326 5.241506 GTCCAAGTTCATGTTCAAAGATCCA 59.758 40.000 0.00 0.00 0.00 3.41
2338 2382 9.527157 TGACATAAATTTTCAGTCCCTTGAATA 57.473 29.630 0.00 0.00 36.97 1.75
2343 2387 5.480422 GGGTGACATAAATTTTCAGTCCCTT 59.520 40.000 0.00 0.00 0.00 3.95
2365 2409 3.198417 CCAGAAATGGAAAGGGAATTGGG 59.802 47.826 0.00 0.00 0.00 4.12
2429 2473 5.185249 GGATTTATGAGGCAGCAATCATGAT 59.815 40.000 18.26 1.18 36.81 2.45
2439 2483 5.188434 TCAGAAACAGGATTTATGAGGCAG 58.812 41.667 0.00 0.00 0.00 4.85
2449 2493 5.704515 CACAGAGTTGATCAGAAACAGGATT 59.295 40.000 0.00 0.00 0.00 3.01
2451 2495 4.344968 TCACAGAGTTGATCAGAAACAGGA 59.655 41.667 0.00 0.00 0.00 3.86
2480 2524 5.243730 TGTCAAAGGAAATCATGAAACTCCC 59.756 40.000 14.39 6.28 0.00 4.30
2630 2674 1.592081 CTACAGATCTCAAAGCTGCGC 59.408 52.381 0.00 0.00 33.03 6.09
2949 2994 8.691661 AACTGTTGATTGTAGAAGTAAATGGT 57.308 30.769 0.00 0.00 0.00 3.55
3021 3067 9.626045 GAAAGGAAAACAACCATTACTATCAAG 57.374 33.333 0.00 0.00 0.00 3.02
3022 3068 8.581578 GGAAAGGAAAACAACCATTACTATCAA 58.418 33.333 0.00 0.00 0.00 2.57
3023 3069 7.177744 GGGAAAGGAAAACAACCATTACTATCA 59.822 37.037 0.00 0.00 0.00 2.15
3026 3072 5.474189 CGGGAAAGGAAAACAACCATTACTA 59.526 40.000 0.00 0.00 0.00 1.82
3030 3076 3.301274 TCGGGAAAGGAAAACAACCATT 58.699 40.909 0.00 0.00 0.00 3.16
3034 3080 3.978855 CGAAATCGGGAAAGGAAAACAAC 59.021 43.478 0.00 0.00 35.37 3.32
3060 3106 3.812609 CACAGTTATACAACACTGCCACA 59.187 43.478 2.78 0.00 43.72 4.17
3061 3107 4.062293 TCACAGTTATACAACACTGCCAC 58.938 43.478 2.78 0.00 43.72 5.01
3065 3115 9.290483 CAGTATACTCACAGTTATACAACACTG 57.710 37.037 1.26 1.51 45.15 3.66
3085 3135 5.800296 TGCTTTAAGTGAACCTGCAGTATA 58.200 37.500 13.81 0.00 0.00 1.47
3089 3139 4.510038 AATGCTTTAAGTGAACCTGCAG 57.490 40.909 6.78 6.78 32.42 4.41
3148 3198 9.577110 CAGACTCGGTTTTGTATAATACTACAA 57.423 33.333 0.00 0.00 39.27 2.41
3163 3213 0.106149 AGTTTCGGCAGACTCGGTTT 59.894 50.000 0.00 0.00 0.00 3.27
3167 3217 0.039074 AGACAGTTTCGGCAGACTCG 60.039 55.000 0.00 0.00 0.00 4.18
3202 3252 4.286032 GGGAAAAATAAGGGACCTGCTTTT 59.714 41.667 0.00 0.00 0.00 2.27
3215 3265 2.317371 TGGCTGGCAGGGAAAAATAA 57.683 45.000 17.64 0.00 0.00 1.40
3286 3336 9.754382 ATAAACTAAAGCAATGGATTTATGCAG 57.246 29.630 0.00 0.00 42.45 4.41
3317 3368 3.668447 TGAGAGTGATGCCTGACTTTTC 58.332 45.455 0.00 0.00 0.00 2.29
3364 3415 3.008375 AGTCAAAGCAGCTGAAGATGGTA 59.992 43.478 20.43 0.00 41.64 3.25
3372 3423 2.908688 TGTGTAGTCAAAGCAGCTGA 57.091 45.000 20.43 0.00 0.00 4.26
3457 3510 5.337578 TTTAGTTTTCCATATGCAAGGGC 57.662 39.130 0.00 0.00 41.68 5.19
3497 3550 0.323360 GCCCACCACTAAATCCTGCA 60.323 55.000 0.00 0.00 0.00 4.41
3616 3669 7.040478 CCACTGTTGAGTAATTTGATTCCTCAA 60.040 37.037 5.04 5.04 41.15 3.02
3713 3766 1.572085 CTGTTGGCGTGCTCTCCAAG 61.572 60.000 10.35 0.00 42.44 3.61
3744 3797 0.818852 TATGCATGGATGTGGGTGCG 60.819 55.000 10.16 0.00 40.34 5.34
3779 3832 2.919602 ACAATGAATCCTACCCCACAGT 59.080 45.455 0.00 0.00 0.00 3.55
3784 3837 3.644966 TCACACAATGAATCCTACCCC 57.355 47.619 0.00 0.00 33.02 4.95
3823 3876 2.263077 CCCTGAAGAAGACGAACATCG 58.737 52.381 0.00 0.00 46.93 3.84
3830 3883 1.819288 TCTAGCACCCTGAAGAAGACG 59.181 52.381 0.00 0.00 0.00 4.18
3831 3884 2.563179 TGTCTAGCACCCTGAAGAAGAC 59.437 50.000 0.00 0.00 34.00 3.01
3880 3933 0.447406 CCATTTTCGCAGCATCGTCA 59.553 50.000 0.00 0.00 0.00 4.35
3889 3942 9.562408 TTAGTCATATAAATACCCATTTTCGCA 57.438 29.630 0.00 0.00 35.88 5.10
3977 4030 0.606096 GAAAAATCAACCCCCGGTGG 59.394 55.000 0.00 0.00 35.34 4.61
4015 4068 1.696063 CCACAAATATGGGAGCTGGG 58.304 55.000 0.00 0.00 35.95 4.45
4072 4125 2.933906 CCATCCAAAATGCAGCATTCAC 59.066 45.455 21.10 0.00 32.43 3.18
4109 4162 2.689471 GGTTGGTTCATCATGCATGCTA 59.311 45.455 22.25 6.15 31.70 3.49
4110 4163 1.479323 GGTTGGTTCATCATGCATGCT 59.521 47.619 22.25 9.87 31.70 3.79
4361 4418 2.161855 TCCGCTCTGCAACATGAAATT 58.838 42.857 0.00 0.00 0.00 1.82
4397 4454 3.885297 CCTCCACGATTTTCTTGGCATAT 59.115 43.478 0.00 0.00 35.92 1.78
4496 4553 2.215587 CGTGTGTGCTACATATGCGTAC 59.784 50.000 1.58 4.87 42.24 3.67
4499 4556 0.576798 CCGTGTGTGCTACATATGCG 59.423 55.000 1.58 0.00 42.24 4.73
4541 4598 8.576442 ACTATTTGTTTTGCTTGCTAATACAGT 58.424 29.630 0.00 0.00 0.00 3.55
4542 4599 8.853345 CACTATTTGTTTTGCTTGCTAATACAG 58.147 33.333 0.00 0.00 0.00 2.74
4543 4600 8.572185 TCACTATTTGTTTTGCTTGCTAATACA 58.428 29.630 0.00 0.00 0.00 2.29
4544 4601 8.964420 TCACTATTTGTTTTGCTTGCTAATAC 57.036 30.769 0.00 0.00 0.00 1.89
4570 4627 7.337689 TCTGAACTAAATATTTCTGCTGTGCAT 59.662 33.333 3.39 0.00 38.13 3.96
4664 4721 1.799403 GCATCATTGGAGAGCTGATCG 59.201 52.381 0.00 0.00 0.00 3.69
4670 4727 5.961396 ATTCTATTGCATCATTGGAGAGC 57.039 39.130 0.00 0.00 0.00 4.09
4844 4916 9.267084 CAATCTTACCCTTCTAGATTCTTTAGC 57.733 37.037 0.00 0.00 36.70 3.09
5021 5093 1.272203 TGCCAACCCGGTATTTCATGT 60.272 47.619 0.00 0.00 36.97 3.21
5035 5107 2.280628 GCTACATACCTGTCTGCCAAC 58.719 52.381 0.00 0.00 36.79 3.77
5085 5157 7.326454 TCTCAATCACAGTCTCCTATTCTTTG 58.674 38.462 0.00 0.00 0.00 2.77
5086 5158 7.487822 TCTCAATCACAGTCTCCTATTCTTT 57.512 36.000 0.00 0.00 0.00 2.52
5087 5159 7.673641 ATCTCAATCACAGTCTCCTATTCTT 57.326 36.000 0.00 0.00 0.00 2.52
5088 5160 8.954834 ATATCTCAATCACAGTCTCCTATTCT 57.045 34.615 0.00 0.00 0.00 2.40
5090 5162 9.030452 GGTATATCTCAATCACAGTCTCCTATT 57.970 37.037 0.00 0.00 0.00 1.73
5091 5163 7.617723 GGGTATATCTCAATCACAGTCTCCTAT 59.382 40.741 0.00 0.00 0.00 2.57
5092 5164 6.948886 GGGTATATCTCAATCACAGTCTCCTA 59.051 42.308 0.00 0.00 0.00 2.94
5093 5165 5.777732 GGGTATATCTCAATCACAGTCTCCT 59.222 44.000 0.00 0.00 0.00 3.69
5094 5166 5.540337 TGGGTATATCTCAATCACAGTCTCC 59.460 44.000 0.00 0.00 0.00 3.71
5095 5167 6.656632 TGGGTATATCTCAATCACAGTCTC 57.343 41.667 0.00 0.00 0.00 3.36
5096 5168 7.623999 ATTGGGTATATCTCAATCACAGTCT 57.376 36.000 0.00 0.00 42.98 3.24
5097 5169 7.389053 GGAATTGGGTATATCTCAATCACAGTC 59.611 40.741 2.11 0.00 45.43 3.51
5247 5319 2.375174 AGGGCTATGGTGTGTTCTTTGA 59.625 45.455 0.00 0.00 0.00 2.69
5259 5331 0.322975 CGATCCAAGGAGGGCTATGG 59.677 60.000 0.00 0.00 38.24 2.74
5271 5343 1.143838 CGGATGACAGGCGATCCAA 59.856 57.895 0.00 0.00 38.50 3.53
5347 5419 3.674138 GCTGTCCTATGGTTTGCACATTG 60.674 47.826 0.00 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.