Multiple sequence alignment - TraesCS1A01G240400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G240400 chr1A 100.000 8833 0 0 1 8833 427528764 427519932 0.000000e+00 16312.0
1 TraesCS1A01G240400 chr1A 83.859 1840 202 52 3480 5258 427524267 427522462 0.000000e+00 1664.0
2 TraesCS1A01G240400 chr1A 83.859 1840 202 52 4498 6303 427525285 427523507 0.000000e+00 1664.0
3 TraesCS1A01G240400 chr1A 79.218 1126 180 33 2376 3483 427524409 427523320 0.000000e+00 734.0
4 TraesCS1A01G240400 chr1A 79.218 1126 180 33 4356 5445 427526389 427525282 0.000000e+00 734.0
5 TraesCS1A01G240400 chr1A 80.773 983 147 26 2529 3483 427525280 427524312 0.000000e+00 730.0
6 TraesCS1A01G240400 chr1A 80.773 983 147 26 3485 4453 427526236 427525282 0.000000e+00 730.0
7 TraesCS1A01G240400 chr1A 80.450 977 121 39 2376 3303 427523416 427522461 0.000000e+00 682.0
8 TraesCS1A01G240400 chr1A 97.208 394 10 1 5808 6200 292909500 292909893 0.000000e+00 665.0
9 TraesCS1A01G240400 chr1A 80.774 801 111 21 3480 4245 427523277 427522485 3.550000e-163 586.0
10 TraesCS1A01G240400 chr1A 80.774 801 111 21 5488 6280 427525285 427524520 3.550000e-163 586.0
11 TraesCS1A01G240400 chr1A 88.571 350 28 9 343 685 427810530 427810186 1.770000e-111 414.0
12 TraesCS1A01G240400 chr1A 90.698 301 17 6 833 1132 427702897 427702607 2.990000e-104 390.0
13 TraesCS1A01G240400 chr1A 81.886 403 63 8 3770 4168 292909500 292909896 1.840000e-86 331.0
14 TraesCS1A01G240400 chr1A 82.090 402 55 12 2812 3203 292909500 292909894 2.380000e-85 327.0
15 TraesCS1A01G240400 chr1A 82.927 164 10 5 5008 5164 231343245 231343093 2.000000e-26 132.0
16 TraesCS1A01G240400 chr1A 91.954 87 3 2 757 842 427702919 427702836 1.560000e-22 119.0
17 TraesCS1A01G240400 chr1A 98.438 64 1 0 779 842 427527932 427527869 7.250000e-21 113.0
18 TraesCS1A01G240400 chr1A 98.438 64 1 0 833 896 427527986 427527923 7.250000e-21 113.0
19 TraesCS1A01G240400 chr1D 96.699 5484 101 25 833 6289 330541117 330535687 0.000000e+00 9051.0
20 TraesCS1A01G240400 chr1D 95.860 1570 35 10 6637 8183 330534968 330533406 0.000000e+00 2512.0
21 TraesCS1A01G240400 chr1D 84.457 1840 197 51 4498 6303 330538492 330536708 0.000000e+00 1731.0
22 TraesCS1A01G240400 chr1D 83.875 1817 196 50 3480 5238 330537474 330535697 0.000000e+00 1642.0
23 TraesCS1A01G240400 chr1D 79.840 1126 178 31 2376 3483 330537616 330536522 0.000000e+00 776.0
24 TraesCS1A01G240400 chr1D 81.180 983 143 26 2529 3483 330538487 330537519 0.000000e+00 752.0
25 TraesCS1A01G240400 chr1D 80.570 983 149 26 3485 4453 330539443 330538489 0.000000e+00 719.0
26 TraesCS1A01G240400 chr1D 79.734 1051 162 33 4430 5445 330539523 330538489 0.000000e+00 713.0
27 TraesCS1A01G240400 chr1D 91.463 492 28 7 357 841 330541541 330541057 0.000000e+00 664.0
28 TraesCS1A01G240400 chr1D 81.021 901 106 36 5423 6304 330539523 330538669 0.000000e+00 656.0
29 TraesCS1A01G240400 chr1D 79.854 958 115 41 2376 3287 330536617 330535692 5.820000e-176 628.0
30 TraesCS1A01G240400 chr1D 93.532 402 25 1 8270 8671 330533403 330533003 1.640000e-166 597.0
31 TraesCS1A01G240400 chr1D 80.050 802 105 27 3480 4245 330536479 330535697 2.170000e-150 544.0
32 TraesCS1A01G240400 chr1D 96.393 305 11 0 6334 6638 330535434 330535130 3.680000e-138 503.0
33 TraesCS1A01G240400 chr1D 80.220 273 50 4 71 339 442423516 442423788 1.500000e-47 202.0
34 TraesCS1A01G240400 chr1D 89.404 151 13 2 8680 8828 330532959 330532810 4.210000e-43 187.0
35 TraesCS1A01G240400 chr1D 88.652 141 16 0 4372 4512 412515025 412515165 1.180000e-38 172.0
36 TraesCS1A01G240400 chr1D 98.837 86 1 0 6290 6375 330535503 330535418 4.270000e-33 154.0
37 TraesCS1A01G240400 chr1B 95.168 2794 66 20 835 3610 445200646 445197904 0.000000e+00 4348.0
38 TraesCS1A01G240400 chr1B 97.158 2569 44 10 3735 6289 445197566 445195013 0.000000e+00 4313.0
39 TraesCS1A01G240400 chr1B 93.596 2186 81 22 6334 8463 445194702 445192520 0.000000e+00 3206.0
40 TraesCS1A01G240400 chr1B 83.516 1820 201 50 3480 5238 445196803 445195022 0.000000e+00 1607.0
41 TraesCS1A01G240400 chr1B 83.596 1585 173 48 4752 6303 445197566 445196036 0.000000e+00 1406.0
42 TraesCS1A01G240400 chr1B 79.840 1126 179 30 2376 3483 445196945 445195850 0.000000e+00 778.0
43 TraesCS1A01G240400 chr1B 79.876 805 104 26 3480 4245 445195807 445195022 3.630000e-148 536.0
44 TraesCS1A01G240400 chr1B 82.505 543 71 15 2764 3289 445195550 445195015 1.050000e-123 455.0
45 TraesCS1A01G240400 chr1B 82.490 514 79 8 5774 6280 445197565 445197056 2.930000e-119 440.0
46 TraesCS1A01G240400 chr1B 91.131 327 17 7 521 841 445200908 445200588 4.900000e-117 433.0
47 TraesCS1A01G240400 chr1B 86.420 243 31 2 98 339 668921339 668921098 1.890000e-66 265.0
48 TraesCS1A01G240400 chr1B 92.500 160 12 0 343 502 445426068 445425909 6.900000e-56 230.0
49 TraesCS1A01G240400 chr1B 91.411 163 12 2 8671 8833 445184605 445184445 1.150000e-53 222.0
50 TraesCS1A01G240400 chr1B 91.912 136 4 1 8450 8578 445184998 445184863 5.450000e-42 183.0
51 TraesCS1A01G240400 chr1B 88.722 133 13 2 4498 4628 445198035 445197903 2.550000e-35 161.0
52 TraesCS1A01G240400 chr1B 97.826 92 2 0 6284 6375 445194777 445194686 9.180000e-35 159.0
53 TraesCS1A01G240400 chr1B 93.750 96 6 0 8576 8671 445184735 445184640 2.570000e-30 145.0
54 TraesCS1A01G240400 chr6D 93.328 1214 36 11 5008 6200 220271013 220272202 0.000000e+00 1751.0
55 TraesCS1A01G240400 chr6D 79.089 1229 156 47 3992 5159 220271013 220272201 0.000000e+00 752.0
56 TraesCS1A01G240400 chr6D 87.456 574 49 10 5134 5689 225594044 225593476 2.690000e-179 640.0
57 TraesCS1A01G240400 chr6D 76.657 724 108 25 3480 4168 220271508 220272205 2.360000e-90 344.0
58 TraesCS1A01G240400 chr6D 77.037 540 77 25 2376 2900 225593823 225593316 5.260000e-67 267.0
59 TraesCS1A01G240400 chr6D 77.354 393 55 12 2373 2753 220271356 220271726 1.500000e-47 202.0
60 TraesCS1A01G240400 chr6D 80.769 260 46 4 81 339 417352550 417352294 5.410000e-47 200.0
61 TraesCS1A01G240400 chr6D 82.328 232 34 6 3480 3706 225593677 225593448 2.520000e-45 195.0
62 TraesCS1A01G240400 chr6D 80.180 111 13 5 3054 3155 225593319 225593209 3.420000e-09 75.0
63 TraesCS1A01G240400 chr6D 95.349 43 2 0 5080 5122 225593251 225593209 1.590000e-07 69.4
64 TraesCS1A01G240400 chr7D 95.533 985 23 4 5069 6046 205656585 205657555 0.000000e+00 1555.0
65 TraesCS1A01G240400 chr7D 81.451 965 127 22 4078 5009 205656596 205657541 0.000000e+00 743.0
66 TraesCS1A01G240400 chr7D 96.193 394 14 1 5808 6200 287709604 287709997 2.080000e-180 643.0
67 TraesCS1A01G240400 chr7D 87.456 574 50 9 5134 5689 351625883 351625314 7.480000e-180 641.0
68 TraesCS1A01G240400 chr7D 78.322 715 88 34 2373 3051 205656869 205657552 4.970000e-107 399.0
69 TraesCS1A01G240400 chr7D 82.630 403 60 7 3770 4168 287709604 287710000 1.830000e-91 348.0
70 TraesCS1A01G240400 chr7D 82.913 357 45 11 2812 3158 287709604 287709954 3.100000e-79 307.0
71 TraesCS1A01G240400 chr7D 77.593 540 74 25 2376 2900 351625661 351625154 5.220000e-72 283.0
72 TraesCS1A01G240400 chr7D 93.789 161 9 1 6041 6200 205667894 205668054 3.190000e-59 241.0
73 TraesCS1A01G240400 chr7D 84.466 206 29 3 3480 3683 351625515 351625311 5.410000e-47 200.0
74 TraesCS1A01G240400 chr7D 79.615 260 49 4 81 339 214337541 214337285 5.450000e-42 183.0
75 TraesCS1A01G240400 chr7D 79.452 219 44 1 122 339 84325568 84325786 4.270000e-33 154.0
76 TraesCS1A01G240400 chr7D 95.604 91 4 0 8183 8273 519264631 519264541 7.150000e-31 147.0
77 TraesCS1A01G240400 chr7D 80.180 111 13 5 3054 3155 351625157 351625047 3.420000e-09 75.0
78 TraesCS1A01G240400 chr7D 87.692 65 3 5 6942 7004 568622314 568622375 4.420000e-08 71.3
79 TraesCS1A01G240400 chr3B 84.286 770 105 10 3700 4457 418646953 418647718 0.000000e+00 737.0
80 TraesCS1A01G240400 chr3B 87.671 73 6 1 367 439 407105398 407105329 2.040000e-11 82.4
81 TraesCS1A01G240400 chr3B 94.000 50 2 1 6942 6990 754719629 754719678 3.420000e-09 75.0
82 TraesCS1A01G240400 chr3B 85.135 74 8 1 366 439 417370137 417370207 1.230000e-08 73.1
83 TraesCS1A01G240400 chr3A 83.441 773 98 21 3700 4457 432016291 432017048 0.000000e+00 691.0
84 TraesCS1A01G240400 chr3A 76.863 765 131 30 2747 3483 432016298 432017044 2.990000e-104 390.0
85 TraesCS1A01G240400 chr3A 79.134 254 46 7 92 339 695753067 695753319 1.530000e-37 169.0
86 TraesCS1A01G240400 chr2D 87.456 574 50 9 5134 5689 75410727 75410158 7.480000e-180 641.0
87 TraesCS1A01G240400 chr2D 77.222 540 76 25 2376 2900 75410505 75409998 1.130000e-68 272.0
88 TraesCS1A01G240400 chr2D 82.328 232 34 6 3480 3706 75410359 75410130 2.520000e-45 195.0
89 TraesCS1A01G240400 chr2D 79.121 273 53 4 71 339 121784193 121783921 1.510000e-42 185.0
90 TraesCS1A01G240400 chr2D 80.180 111 13 5 3054 3155 75410001 75409891 3.420000e-09 75.0
91 TraesCS1A01G240400 chr3D 87.282 574 51 9 5134 5689 5421181 5420612 3.480000e-178 636.0
92 TraesCS1A01G240400 chr3D 87.391 571 50 9 5134 5686 480833009 480833575 3.480000e-178 636.0
93 TraesCS1A01G240400 chr3D 82.476 622 69 17 4868 5452 302872746 302872128 7.910000e-140 508.0
94 TraesCS1A01G240400 chr3D 76.980 543 78 26 2373 2900 480833228 480833738 5.260000e-67 267.0
95 TraesCS1A01G240400 chr3D 76.667 540 79 25 2376 2900 5420959 5420452 1.140000e-63 255.0
96 TraesCS1A01G240400 chr3D 75.916 573 92 27 2927 3465 302872712 302872152 1.470000e-62 252.0
97 TraesCS1A01G240400 chr3D 83.462 260 38 4 81 339 7091779 7092034 4.120000e-58 237.0
98 TraesCS1A01G240400 chr3D 84.500 200 28 3 3480 3677 480833377 480833575 2.520000e-45 195.0
99 TraesCS1A01G240400 chr3D 81.897 232 35 6 3480 3706 5420813 5420584 1.170000e-43 189.0
100 TraesCS1A01G240400 chr3D 92.157 102 7 1 8178 8279 341550555 341550655 9.240000e-30 143.0
101 TraesCS1A01G240400 chr3D 80.180 111 13 5 3054 3155 5420455 5420345 3.420000e-09 75.0
102 TraesCS1A01G240400 chr3D 80.180 111 13 5 3054 3155 480833735 480833845 3.420000e-09 75.0
103 TraesCS1A01G240400 chr3D 94.000 50 2 1 6942 6990 566132381 566132332 3.420000e-09 75.0
104 TraesCS1A01G240400 chr4D 86.984 315 28 5 3117 3420 73432163 73431851 8.490000e-90 342.0
105 TraesCS1A01G240400 chr4D 79.705 271 53 2 71 339 118377702 118377432 2.520000e-45 195.0
106 TraesCS1A01G240400 chr4D 93.814 97 4 2 8181 8276 489441043 489440948 2.570000e-30 145.0
107 TraesCS1A01G240400 chr4D 81.553 103 18 1 113 214 37019329 37019431 5.680000e-12 84.2
108 TraesCS1A01G240400 chr6A 88.433 268 26 4 4821 5084 65558312 65558046 1.430000e-82 318.0
109 TraesCS1A01G240400 chr6A 76.923 533 76 26 2373 2890 576903983 576904483 8.800000e-65 259.0
110 TraesCS1A01G240400 chr6A 78.755 273 49 7 71 339 123535031 123535298 3.280000e-39 174.0
111 TraesCS1A01G240400 chr6A 85.827 127 12 6 8183 8307 25020217 25020339 7.200000e-26 130.0
112 TraesCS1A01G240400 chrUn 87.833 263 27 4 4821 5079 39183583 39183844 4.010000e-78 303.0
113 TraesCS1A01G240400 chr7A 81.538 260 45 3 81 339 10093313 10093570 2.500000e-50 211.0
114 TraesCS1A01G240400 chr7A 82.456 228 39 1 113 339 734660098 734660325 1.950000e-46 198.0
115 TraesCS1A01G240400 chr5D 77.809 356 57 8 6 339 91865173 91864818 5.410000e-47 200.0
116 TraesCS1A01G240400 chr5D 87.500 72 6 3 368 439 494463601 494463669 7.350000e-11 80.5
117 TraesCS1A01G240400 chr2A 80.309 259 44 7 83 339 677394918 677394665 1.170000e-43 189.0
118 TraesCS1A01G240400 chr4B 94.915 118 4 2 6084 6200 211590502 211590618 5.450000e-42 183.0
119 TraesCS1A01G240400 chr4B 83.077 195 30 3 3808 4000 211590306 211590499 3.280000e-39 174.0
120 TraesCS1A01G240400 chr4B 81.863 204 30 6 2850 3051 211590306 211590504 1.970000e-36 165.0
121 TraesCS1A01G240400 chr4B 92.857 98 5 2 8184 8281 342857159 342857064 3.320000e-29 141.0
122 TraesCS1A01G240400 chr4B 91.071 56 3 2 6925 6978 647623187 647623132 3.420000e-09 75.0
123 TraesCS1A01G240400 chr4B 93.878 49 1 2 6934 6981 15422572 15422525 1.230000e-08 73.1
124 TraesCS1A01G240400 chr7B 80.263 228 43 2 113 339 744900253 744900479 4.240000e-38 171.0
125 TraesCS1A01G240400 chr7B 74.468 329 69 11 7307 7629 88576197 88575878 2.590000e-25 128.0
126 TraesCS1A01G240400 chr6B 83.871 186 20 6 4717 4900 51986873 51987050 1.530000e-37 169.0
127 TraesCS1A01G240400 chr6B 83.799 179 19 6 4717 4893 51963729 51963899 2.550000e-35 161.0
128 TraesCS1A01G240400 chr6B 97.778 45 0 1 6933 6977 675443017 675442974 9.510000e-10 76.8
129 TraesCS1A01G240400 chr2B 91.346 104 6 3 8166 8269 709839426 709839326 1.200000e-28 139.0
130 TraesCS1A01G240400 chr5A 88.696 115 10 2 8171 8282 328804703 328804817 4.300000e-28 137.0
131 TraesCS1A01G240400 chr5A 89.286 112 7 5 8166 8275 113720071 113720179 1.550000e-27 135.0
132 TraesCS1A01G240400 chr5A 86.765 68 4 4 6942 7006 329824406 329824471 4.420000e-08 71.3
133 TraesCS1A01G240400 chr4A 77.895 190 40 2 151 339 294298500 294298312 5.600000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G240400 chr1A 427519932 427528764 8832 True 16312.000000 16312 100.000000 1 8833 1 chr1A.!!$R2 8832
1 TraesCS1A01G240400 chr1A 427522461 427527986 5525 True 757.818182 1664 84.234000 779 6303 11 chr1A.!!$R4 5524
2 TraesCS1A01G240400 chr1D 330532810 330541117 8307 True 2167.333333 9051 95.120833 833 8828 6 chr1D.!!$R1 7995
3 TraesCS1A01G240400 chr1D 330535692 330541541 5849 True 882.500000 1731 82.204400 357 6304 10 chr1D.!!$R2 5947
4 TraesCS1A01G240400 chr1B 445192520 445200908 8388 True 1486.833333 4348 87.952000 521 8463 12 chr1B.!!$R4 7942
5 TraesCS1A01G240400 chr6D 220271013 220272205 1192 False 762.250000 1751 81.607000 2373 6200 4 chr6D.!!$F1 3827
6 TraesCS1A01G240400 chr6D 225593209 225594044 835 True 249.280000 640 84.470000 2376 5689 5 chr6D.!!$R2 3313
7 TraesCS1A01G240400 chr7D 205656585 205657555 970 False 899.000000 1555 85.102000 2373 6046 3 chr7D.!!$F4 3673
8 TraesCS1A01G240400 chr7D 351625047 351625883 836 True 299.750000 641 82.423750 2376 5689 4 chr7D.!!$R3 3313
9 TraesCS1A01G240400 chr3B 418646953 418647718 765 False 737.000000 737 84.286000 3700 4457 1 chr3B.!!$F2 757
10 TraesCS1A01G240400 chr3A 432016291 432017048 757 False 540.500000 691 80.152000 2747 4457 2 chr3A.!!$F2 1710
11 TraesCS1A01G240400 chr2D 75409891 75410727 836 True 295.750000 641 81.796500 2376 5689 4 chr2D.!!$R2 3313
12 TraesCS1A01G240400 chr3D 302872128 302872746 618 True 380.000000 508 79.196000 2927 5452 2 chr3D.!!$R3 2525
13 TraesCS1A01G240400 chr3D 480833009 480833845 836 False 293.250000 636 82.262750 2373 5686 4 chr3D.!!$F3 3313
14 TraesCS1A01G240400 chr3D 5420345 5421181 836 True 288.750000 636 81.506500 2376 5689 4 chr3D.!!$R2 3313
15 TraesCS1A01G240400 chr6A 576903983 576904483 500 False 259.000000 259 76.923000 2373 2890 1 chr6A.!!$F3 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.030638 AATTGTCCACACAAGCACGC 59.969 50.0 0.00 0.0 45.85 5.34 F
246 247 0.037697 ACAATCAGTGCTCCGCGTTA 60.038 50.0 4.92 0.0 0.00 3.18 F
250 251 0.245266 TCAGTGCTCCGCGTTATTGA 59.755 50.0 4.92 0.0 0.00 2.57 F
549 556 0.250727 CAAATCTGGTCCGTGGTGGT 60.251 55.0 0.00 0.0 39.52 4.16 F
592 601 1.095807 GCACATAGGCCCCTTTCGAC 61.096 60.0 0.00 0.0 0.00 4.20 F
6393 7026 2.158842 ACTCCTGCTAGACATGCCAATC 60.159 50.0 0.00 0.0 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
6378 7011 1.939974 TCGTGATTGGCATGTCTAGC 58.060 50.000 0.00 0.0 35.00 3.42 R
6383 7016 3.724508 TGTTTTTCGTGATTGGCATGT 57.275 38.095 0.00 0.0 35.00 3.21 R
6458 7091 4.330074 CCAAACATTCTAGACTACTTGCCG 59.670 45.833 0.00 0.0 0.00 5.69 R
6645 7441 2.098607 AGATGCATGCAAAGGATGAACG 59.901 45.455 26.68 0.0 0.00 3.95 R
6789 7585 1.400530 CGGTGACCTCATAGGACCCC 61.401 65.000 0.00 0.0 37.67 4.95 R
8644 9478 0.321122 CTCTCCTTGTGTGCCAGGAC 60.321 60.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.056125 CTGCGCGACCTCACCTGA 62.056 66.667 12.10 0.00 0.00 3.86
30 31 3.362399 CTGCGCGACCTCACCTGAT 62.362 63.158 12.10 0.00 0.00 2.90
31 32 2.583593 GCGCGACCTCACCTGATC 60.584 66.667 12.10 0.00 0.00 2.92
32 33 2.105128 CGCGACCTCACCTGATCC 59.895 66.667 0.00 0.00 0.00 3.36
33 34 2.105128 GCGACCTCACCTGATCCG 59.895 66.667 0.00 0.00 0.00 4.18
34 35 2.808315 CGACCTCACCTGATCCGG 59.192 66.667 0.91 0.91 0.00 5.14
35 36 2.786495 CGACCTCACCTGATCCGGG 61.786 68.421 8.17 4.29 35.68 5.73
36 37 1.686110 GACCTCACCTGATCCGGGT 60.686 63.158 8.17 0.00 45.12 5.28
50 51 3.890674 GGGTGCCGATGAAGACAC 58.109 61.111 0.00 0.00 0.00 3.67
51 52 2.100631 GGGTGCCGATGAAGACACG 61.101 63.158 0.00 0.00 33.81 4.49
52 53 2.740714 GGTGCCGATGAAGACACGC 61.741 63.158 0.00 0.00 33.81 5.34
53 54 2.434185 TGCCGATGAAGACACGCC 60.434 61.111 0.00 0.00 0.00 5.68
54 55 3.195698 GCCGATGAAGACACGCCC 61.196 66.667 0.00 0.00 0.00 6.13
55 56 2.264480 CCGATGAAGACACGCCCA 59.736 61.111 0.00 0.00 0.00 5.36
56 57 1.153369 CCGATGAAGACACGCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
57 58 0.104120 CCGATGAAGACACGCCCATA 59.896 55.000 0.00 0.00 0.00 2.74
58 59 1.491670 CGATGAAGACACGCCCATAG 58.508 55.000 0.00 0.00 0.00 2.23
59 60 1.221414 GATGAAGACACGCCCATAGC 58.779 55.000 0.00 0.00 38.52 2.97
60 61 0.541392 ATGAAGACACGCCCATAGCA 59.459 50.000 0.00 0.00 44.04 3.49
61 62 0.541392 TGAAGACACGCCCATAGCAT 59.459 50.000 0.00 0.00 44.04 3.79
62 63 0.940126 GAAGACACGCCCATAGCATG 59.060 55.000 0.00 0.00 44.04 4.06
66 67 3.628005 CACGCCCATAGCATGTTTG 57.372 52.632 0.00 0.00 44.04 2.93
67 68 0.810648 CACGCCCATAGCATGTTTGT 59.189 50.000 0.00 0.00 44.04 2.83
68 69 1.202114 CACGCCCATAGCATGTTTGTT 59.798 47.619 0.00 0.00 44.04 2.83
69 70 1.202114 ACGCCCATAGCATGTTTGTTG 59.798 47.619 0.00 0.00 44.04 3.33
70 71 1.472082 CGCCCATAGCATGTTTGTTGA 59.528 47.619 0.00 0.00 44.04 3.18
71 72 2.094803 CGCCCATAGCATGTTTGTTGAA 60.095 45.455 0.00 0.00 44.04 2.69
72 73 3.613671 CGCCCATAGCATGTTTGTTGAAA 60.614 43.478 0.00 0.00 44.04 2.69
73 74 4.506758 GCCCATAGCATGTTTGTTGAAAT 58.493 39.130 0.00 0.00 42.97 2.17
74 75 4.330620 GCCCATAGCATGTTTGTTGAAATG 59.669 41.667 0.00 0.00 42.97 2.32
75 76 4.330620 CCCATAGCATGTTTGTTGAAATGC 59.669 41.667 0.00 0.00 44.56 3.56
76 77 4.330620 CCATAGCATGTTTGTTGAAATGCC 59.669 41.667 3.03 0.00 45.18 4.40
77 78 2.769893 AGCATGTTTGTTGAAATGCCC 58.230 42.857 3.03 0.00 45.18 5.36
78 79 2.104451 AGCATGTTTGTTGAAATGCCCA 59.896 40.909 3.03 0.00 45.18 5.36
79 80 3.075884 GCATGTTTGTTGAAATGCCCAT 58.924 40.909 0.00 0.00 39.58 4.00
80 81 4.020396 AGCATGTTTGTTGAAATGCCCATA 60.020 37.500 3.03 0.00 45.18 2.74
81 82 4.694509 GCATGTTTGTTGAAATGCCCATAA 59.305 37.500 0.00 0.00 39.58 1.90
82 83 5.163834 GCATGTTTGTTGAAATGCCCATAAG 60.164 40.000 0.00 0.00 39.58 1.73
83 84 5.798125 TGTTTGTTGAAATGCCCATAAGA 57.202 34.783 0.00 0.00 0.00 2.10
84 85 6.166984 TGTTTGTTGAAATGCCCATAAGAA 57.833 33.333 0.00 0.00 0.00 2.52
85 86 6.586344 TGTTTGTTGAAATGCCCATAAGAAA 58.414 32.000 0.00 0.00 0.00 2.52
86 87 7.050377 TGTTTGTTGAAATGCCCATAAGAAAA 58.950 30.769 0.00 0.00 0.00 2.29
87 88 7.718753 TGTTTGTTGAAATGCCCATAAGAAAAT 59.281 29.630 0.00 0.00 0.00 1.82
88 89 8.567104 GTTTGTTGAAATGCCCATAAGAAAATT 58.433 29.630 0.00 0.00 0.00 1.82
89 90 7.670009 TGTTGAAATGCCCATAAGAAAATTG 57.330 32.000 0.00 0.00 0.00 2.32
90 91 6.654161 TGTTGAAATGCCCATAAGAAAATTGG 59.346 34.615 0.00 0.00 0.00 3.16
91 92 6.617782 TGAAATGCCCATAAGAAAATTGGA 57.382 33.333 0.00 0.00 31.94 3.53
92 93 6.642430 TGAAATGCCCATAAGAAAATTGGAG 58.358 36.000 0.00 0.00 31.94 3.86
93 94 6.440010 TGAAATGCCCATAAGAAAATTGGAGA 59.560 34.615 0.00 0.00 31.94 3.71
94 95 6.475596 AATGCCCATAAGAAAATTGGAGAG 57.524 37.500 0.00 0.00 31.94 3.20
95 96 5.191727 TGCCCATAAGAAAATTGGAGAGA 57.808 39.130 0.00 0.00 31.94 3.10
96 97 5.195940 TGCCCATAAGAAAATTGGAGAGAG 58.804 41.667 0.00 0.00 31.94 3.20
97 98 5.044919 TGCCCATAAGAAAATTGGAGAGAGA 60.045 40.000 0.00 0.00 31.94 3.10
98 99 5.888161 GCCCATAAGAAAATTGGAGAGAGAA 59.112 40.000 0.00 0.00 31.94 2.87
99 100 6.378280 GCCCATAAGAAAATTGGAGAGAGAAA 59.622 38.462 0.00 0.00 31.94 2.52
100 101 7.416101 GCCCATAAGAAAATTGGAGAGAGAAAG 60.416 40.741 0.00 0.00 31.94 2.62
101 102 7.831193 CCCATAAGAAAATTGGAGAGAGAAAGA 59.169 37.037 0.00 0.00 31.94 2.52
102 103 9.236006 CCATAAGAAAATTGGAGAGAGAAAGAA 57.764 33.333 0.00 0.00 31.94 2.52
105 106 8.986929 AAGAAAATTGGAGAGAGAAAGAAGAA 57.013 30.769 0.00 0.00 0.00 2.52
106 107 8.620116 AGAAAATTGGAGAGAGAAAGAAGAAG 57.380 34.615 0.00 0.00 0.00 2.85
107 108 8.435982 AGAAAATTGGAGAGAGAAAGAAGAAGA 58.564 33.333 0.00 0.00 0.00 2.87
108 109 7.977789 AAATTGGAGAGAGAAAGAAGAAGAC 57.022 36.000 0.00 0.00 0.00 3.01
109 110 6.933514 ATTGGAGAGAGAAAGAAGAAGACT 57.066 37.500 0.00 0.00 0.00 3.24
110 111 5.975693 TGGAGAGAGAAAGAAGAAGACTC 57.024 43.478 0.00 0.00 0.00 3.36
111 112 5.640147 TGGAGAGAGAAAGAAGAAGACTCT 58.360 41.667 0.00 0.00 40.05 3.24
112 113 6.785076 TGGAGAGAGAAAGAAGAAGACTCTA 58.215 40.000 0.00 0.00 37.93 2.43
113 114 6.884295 TGGAGAGAGAAAGAAGAAGACTCTAG 59.116 42.308 0.00 0.00 37.93 2.43
114 115 6.884836 GGAGAGAGAAAGAAGAAGACTCTAGT 59.115 42.308 0.00 0.00 37.93 2.57
115 116 7.065923 GGAGAGAGAAAGAAGAAGACTCTAGTC 59.934 44.444 1.72 1.72 45.08 2.59
127 128 4.116747 GACTCTAGTCATTGACAGGTGG 57.883 50.000 18.57 7.26 44.18 4.61
128 129 2.834549 ACTCTAGTCATTGACAGGTGGG 59.165 50.000 18.57 7.85 34.60 4.61
129 130 2.169352 CTCTAGTCATTGACAGGTGGGG 59.831 54.545 18.57 0.00 34.60 4.96
130 131 0.618458 TAGTCATTGACAGGTGGGGC 59.382 55.000 18.57 0.00 34.60 5.80
131 132 1.678970 GTCATTGACAGGTGGGGCC 60.679 63.158 11.93 0.00 32.09 5.80
132 133 2.362889 CATTGACAGGTGGGGCCC 60.363 66.667 18.17 18.17 38.26 5.80
133 134 2.535317 ATTGACAGGTGGGGCCCT 60.535 61.111 25.93 1.41 38.26 5.19
134 135 2.616458 ATTGACAGGTGGGGCCCTC 61.616 63.158 25.93 21.03 38.26 4.30
141 142 4.717313 GTGGGGCCCTCGTCCAAC 62.717 72.222 25.93 7.77 31.73 3.77
142 143 4.974438 TGGGGCCCTCGTCCAACT 62.974 66.667 25.93 0.00 0.00 3.16
143 144 4.097361 GGGGCCCTCGTCCAACTC 62.097 72.222 24.38 0.00 0.00 3.01
144 145 3.319198 GGGCCCTCGTCCAACTCA 61.319 66.667 17.04 0.00 0.00 3.41
145 146 2.266055 GGCCCTCGTCCAACTCAG 59.734 66.667 0.00 0.00 0.00 3.35
146 147 2.584391 GGCCCTCGTCCAACTCAGT 61.584 63.158 0.00 0.00 0.00 3.41
147 148 1.255667 GGCCCTCGTCCAACTCAGTA 61.256 60.000 0.00 0.00 0.00 2.74
148 149 0.606604 GCCCTCGTCCAACTCAGTAA 59.393 55.000 0.00 0.00 0.00 2.24
149 150 1.001633 GCCCTCGTCCAACTCAGTAAA 59.998 52.381 0.00 0.00 0.00 2.01
150 151 2.354805 GCCCTCGTCCAACTCAGTAAAT 60.355 50.000 0.00 0.00 0.00 1.40
151 152 3.868754 GCCCTCGTCCAACTCAGTAAATT 60.869 47.826 0.00 0.00 0.00 1.82
152 153 3.684788 CCCTCGTCCAACTCAGTAAATTG 59.315 47.826 0.00 0.00 0.00 2.32
153 154 4.315803 CCTCGTCCAACTCAGTAAATTGT 58.684 43.478 0.00 0.00 0.00 2.71
154 155 4.389077 CCTCGTCCAACTCAGTAAATTGTC 59.611 45.833 0.00 0.00 0.00 3.18
155 156 4.312443 TCGTCCAACTCAGTAAATTGTCC 58.688 43.478 0.00 0.00 0.00 4.02
156 157 4.062293 CGTCCAACTCAGTAAATTGTCCA 58.938 43.478 0.00 0.00 0.00 4.02
157 158 4.084013 CGTCCAACTCAGTAAATTGTCCAC 60.084 45.833 0.00 0.00 0.00 4.02
158 159 4.819630 GTCCAACTCAGTAAATTGTCCACA 59.180 41.667 0.00 0.00 0.00 4.17
159 160 4.819630 TCCAACTCAGTAAATTGTCCACAC 59.180 41.667 0.00 0.00 0.00 3.82
160 161 4.578516 CCAACTCAGTAAATTGTCCACACA 59.421 41.667 0.00 0.00 0.00 3.72
161 162 5.067153 CCAACTCAGTAAATTGTCCACACAA 59.933 40.000 0.00 0.00 46.71 3.33
162 163 6.201517 CAACTCAGTAAATTGTCCACACAAG 58.798 40.000 0.00 0.00 45.85 3.16
163 164 4.275936 ACTCAGTAAATTGTCCACACAAGC 59.724 41.667 0.00 0.00 45.85 4.01
164 165 4.203226 TCAGTAAATTGTCCACACAAGCA 58.797 39.130 0.00 0.00 45.85 3.91
165 166 4.036262 TCAGTAAATTGTCCACACAAGCAC 59.964 41.667 0.00 0.00 45.85 4.40
166 167 2.490328 AAATTGTCCACACAAGCACG 57.510 45.000 0.00 0.00 45.85 5.34
167 168 0.030638 AATTGTCCACACAAGCACGC 59.969 50.000 0.00 0.00 45.85 5.34
168 169 1.795170 ATTGTCCACACAAGCACGCC 61.795 55.000 0.00 0.00 45.85 5.68
169 170 2.899838 GTCCACACAAGCACGCCA 60.900 61.111 0.00 0.00 0.00 5.69
170 171 2.899838 TCCACACAAGCACGCCAC 60.900 61.111 0.00 0.00 0.00 5.01
171 172 4.312231 CCACACAAGCACGCCACG 62.312 66.667 0.00 0.00 0.00 4.94
172 173 3.572539 CACACAAGCACGCCACGT 61.573 61.111 0.00 0.00 42.36 4.49
173 174 3.269347 ACACAAGCACGCCACGTC 61.269 61.111 0.00 0.00 38.32 4.34
174 175 3.268603 CACAAGCACGCCACGTCA 61.269 61.111 0.00 0.00 38.32 4.35
175 176 2.967076 ACAAGCACGCCACGTCAG 60.967 61.111 0.00 0.00 38.32 3.51
176 177 4.374702 CAAGCACGCCACGTCAGC 62.375 66.667 0.00 0.00 38.32 4.26
184 185 4.742201 CCACGTCAGCCCGTCAGG 62.742 72.222 0.00 0.00 39.45 3.86
185 186 3.991051 CACGTCAGCCCGTCAGGT 61.991 66.667 0.00 0.00 39.45 4.00
186 187 3.991051 ACGTCAGCCCGTCAGGTG 61.991 66.667 0.00 0.00 35.95 4.00
187 188 4.742201 CGTCAGCCCGTCAGGTGG 62.742 72.222 0.00 0.00 38.26 4.61
204 205 3.380995 GGACCTACCCGTCGGTTT 58.619 61.111 11.06 0.00 40.58 3.27
205 206 1.673477 GGACCTACCCGTCGGTTTT 59.327 57.895 11.06 0.00 40.58 2.43
206 207 0.671472 GGACCTACCCGTCGGTTTTG 60.671 60.000 11.06 0.00 40.58 2.44
207 208 1.293963 GACCTACCCGTCGGTTTTGC 61.294 60.000 11.06 0.00 40.58 3.68
208 209 1.004200 CCTACCCGTCGGTTTTGCT 60.004 57.895 11.06 0.00 40.58 3.91
209 210 0.604511 CCTACCCGTCGGTTTTGCTT 60.605 55.000 11.06 0.00 40.58 3.91
210 211 1.232119 CTACCCGTCGGTTTTGCTTT 58.768 50.000 11.06 0.00 40.58 3.51
211 212 1.605232 CTACCCGTCGGTTTTGCTTTT 59.395 47.619 11.06 0.00 40.58 2.27
212 213 0.818938 ACCCGTCGGTTTTGCTTTTT 59.181 45.000 11.06 0.00 40.58 1.94
234 235 7.938563 TTTTCCGACCAAATTAAACAATCAG 57.061 32.000 0.00 0.00 0.00 2.90
235 236 6.642707 TTCCGACCAAATTAAACAATCAGT 57.357 33.333 0.00 0.00 0.00 3.41
236 237 6.007936 TCCGACCAAATTAAACAATCAGTG 57.992 37.500 0.00 0.00 0.00 3.66
237 238 4.621034 CCGACCAAATTAAACAATCAGTGC 59.379 41.667 0.00 0.00 0.00 4.40
238 239 5.460646 CGACCAAATTAAACAATCAGTGCT 58.539 37.500 0.00 0.00 0.00 4.40
239 240 5.569059 CGACCAAATTAAACAATCAGTGCTC 59.431 40.000 0.00 0.00 0.00 4.26
240 241 5.783111 ACCAAATTAAACAATCAGTGCTCC 58.217 37.500 0.00 0.00 0.00 4.70
241 242 4.858692 CCAAATTAAACAATCAGTGCTCCG 59.141 41.667 0.00 0.00 0.00 4.63
242 243 3.764885 ATTAAACAATCAGTGCTCCGC 57.235 42.857 0.00 0.00 0.00 5.54
243 244 1.075542 TAAACAATCAGTGCTCCGCG 58.924 50.000 0.00 0.00 0.00 6.46
244 245 0.884704 AAACAATCAGTGCTCCGCGT 60.885 50.000 4.92 0.00 0.00 6.01
245 246 0.884704 AACAATCAGTGCTCCGCGTT 60.885 50.000 4.92 0.00 0.00 4.84
246 247 0.037697 ACAATCAGTGCTCCGCGTTA 60.038 50.000 4.92 0.00 0.00 3.18
247 248 1.290203 CAATCAGTGCTCCGCGTTAT 58.710 50.000 4.92 0.00 0.00 1.89
248 249 1.665679 CAATCAGTGCTCCGCGTTATT 59.334 47.619 4.92 0.00 0.00 1.40
249 250 1.290203 ATCAGTGCTCCGCGTTATTG 58.710 50.000 4.92 0.00 0.00 1.90
250 251 0.245266 TCAGTGCTCCGCGTTATTGA 59.755 50.000 4.92 0.00 0.00 2.57
251 252 1.134818 TCAGTGCTCCGCGTTATTGAT 60.135 47.619 4.92 0.00 0.00 2.57
252 253 1.665679 CAGTGCTCCGCGTTATTGATT 59.334 47.619 4.92 0.00 0.00 2.57
253 254 2.863740 CAGTGCTCCGCGTTATTGATTA 59.136 45.455 4.92 0.00 0.00 1.75
254 255 3.060272 CAGTGCTCCGCGTTATTGATTAG 60.060 47.826 4.92 0.00 0.00 1.73
255 256 2.221055 GTGCTCCGCGTTATTGATTAGG 59.779 50.000 4.92 0.00 0.00 2.69
256 257 1.194772 GCTCCGCGTTATTGATTAGGC 59.805 52.381 4.92 0.00 0.00 3.93
257 258 2.479837 CTCCGCGTTATTGATTAGGCA 58.520 47.619 4.92 0.00 0.00 4.75
258 259 2.206750 TCCGCGTTATTGATTAGGCAC 58.793 47.619 4.92 0.00 0.00 5.01
259 260 1.937223 CCGCGTTATTGATTAGGCACA 59.063 47.619 4.92 0.00 0.00 4.57
260 261 2.032894 CCGCGTTATTGATTAGGCACAG 60.033 50.000 4.92 0.00 0.00 3.66
261 262 2.863740 CGCGTTATTGATTAGGCACAGA 59.136 45.455 0.00 0.00 0.00 3.41
262 263 3.060272 CGCGTTATTGATTAGGCACAGAG 60.060 47.826 0.00 0.00 0.00 3.35
263 264 3.871594 GCGTTATTGATTAGGCACAGAGT 59.128 43.478 0.00 0.00 0.00 3.24
264 265 4.332819 GCGTTATTGATTAGGCACAGAGTT 59.667 41.667 0.00 0.00 0.00 3.01
265 266 5.727791 GCGTTATTGATTAGGCACAGAGTTG 60.728 44.000 0.00 0.00 0.00 3.16
266 267 5.220662 CGTTATTGATTAGGCACAGAGTTGG 60.221 44.000 0.00 0.00 0.00 3.77
267 268 3.788227 TTGATTAGGCACAGAGTTGGT 57.212 42.857 0.00 0.00 0.00 3.67
268 269 3.057969 TGATTAGGCACAGAGTTGGTG 57.942 47.619 0.00 0.00 39.25 4.17
269 270 2.637382 TGATTAGGCACAGAGTTGGTGA 59.363 45.455 0.00 0.00 38.54 4.02
270 271 3.264193 TGATTAGGCACAGAGTTGGTGAT 59.736 43.478 0.00 0.00 38.54 3.06
271 272 3.788227 TTAGGCACAGAGTTGGTGATT 57.212 42.857 0.00 0.00 38.54 2.57
272 273 2.664402 AGGCACAGAGTTGGTGATTT 57.336 45.000 0.00 0.00 38.54 2.17
273 274 2.949447 AGGCACAGAGTTGGTGATTTT 58.051 42.857 0.00 0.00 38.54 1.82
274 275 3.299503 AGGCACAGAGTTGGTGATTTTT 58.700 40.909 0.00 0.00 38.54 1.94
292 293 3.731652 TTTTGTGCCCTGACTCAAATG 57.268 42.857 0.00 0.00 34.20 2.32
293 294 2.363306 TTGTGCCCTGACTCAAATGT 57.637 45.000 0.00 0.00 0.00 2.71
294 295 1.608055 TGTGCCCTGACTCAAATGTG 58.392 50.000 0.00 0.00 0.00 3.21
295 296 1.142667 TGTGCCCTGACTCAAATGTGA 59.857 47.619 0.00 0.00 0.00 3.58
296 297 2.224843 TGTGCCCTGACTCAAATGTGAT 60.225 45.455 0.00 0.00 31.85 3.06
297 298 3.008923 TGTGCCCTGACTCAAATGTGATA 59.991 43.478 0.00 0.00 31.85 2.15
298 299 4.202441 GTGCCCTGACTCAAATGTGATAT 58.798 43.478 0.00 0.00 31.85 1.63
299 300 4.274459 GTGCCCTGACTCAAATGTGATATC 59.726 45.833 0.00 0.00 31.85 1.63
300 301 4.080413 TGCCCTGACTCAAATGTGATATCA 60.080 41.667 0.00 0.00 31.85 2.15
301 302 4.883585 GCCCTGACTCAAATGTGATATCAA 59.116 41.667 7.07 0.00 31.68 2.57
302 303 5.008415 GCCCTGACTCAAATGTGATATCAAG 59.992 44.000 7.07 2.58 31.68 3.02
303 304 6.118170 CCCTGACTCAAATGTGATATCAAGT 58.882 40.000 7.07 6.08 31.68 3.16
304 305 6.600822 CCCTGACTCAAATGTGATATCAAGTT 59.399 38.462 7.07 2.53 31.68 2.66
305 306 7.414873 CCCTGACTCAAATGTGATATCAAGTTG 60.415 40.741 7.07 12.83 31.68 3.16
306 307 7.120285 CCTGACTCAAATGTGATATCAAGTTGT 59.880 37.037 7.07 0.77 31.68 3.32
307 308 8.394971 TGACTCAAATGTGATATCAAGTTGTT 57.605 30.769 7.07 6.02 31.85 2.83
308 309 9.500785 TGACTCAAATGTGATATCAAGTTGTTA 57.499 29.630 7.07 0.00 31.85 2.41
309 310 9.760660 GACTCAAATGTGATATCAAGTTGTTAC 57.239 33.333 7.07 6.32 31.85 2.50
310 311 8.730680 ACTCAAATGTGATATCAAGTTGTTACC 58.269 33.333 7.07 0.00 31.85 2.85
311 312 8.050778 TCAAATGTGATATCAAGTTGTTACCC 57.949 34.615 7.07 0.00 0.00 3.69
312 313 7.888021 TCAAATGTGATATCAAGTTGTTACCCT 59.112 33.333 7.07 0.00 0.00 4.34
313 314 9.173021 CAAATGTGATATCAAGTTGTTACCCTA 57.827 33.333 7.07 0.00 0.00 3.53
314 315 9.747898 AAATGTGATATCAAGTTGTTACCCTAA 57.252 29.630 7.07 0.00 0.00 2.69
315 316 8.732746 ATGTGATATCAAGTTGTTACCCTAAC 57.267 34.615 7.07 0.00 39.11 2.34
316 317 7.681679 TGTGATATCAAGTTGTTACCCTAACA 58.318 34.615 7.07 0.00 46.13 2.41
325 326 3.811083 TGTTACCCTAACACCAAGTGTG 58.189 45.455 0.33 0.00 46.79 3.82
326 327 3.143728 GTTACCCTAACACCAAGTGTGG 58.856 50.000 0.33 1.42 46.79 4.17
337 338 2.661718 CCAAGTGTGGTGGTTTTAGGT 58.338 47.619 0.00 0.00 40.42 3.08
338 339 3.822940 CCAAGTGTGGTGGTTTTAGGTA 58.177 45.455 0.00 0.00 40.42 3.08
339 340 3.566742 CCAAGTGTGGTGGTTTTAGGTAC 59.433 47.826 0.00 0.00 40.42 3.34
340 341 4.457466 CAAGTGTGGTGGTTTTAGGTACT 58.543 43.478 0.00 0.00 46.37 2.73
341 342 4.347360 AGTGTGGTGGTTTTAGGTACTC 57.653 45.455 0.00 0.00 41.75 2.59
342 343 3.072038 AGTGTGGTGGTTTTAGGTACTCC 59.928 47.826 0.00 0.00 41.75 3.85
344 345 3.717913 TGTGGTGGTTTTAGGTACTCCTT 59.282 43.478 0.00 0.00 42.12 3.36
345 346 4.166531 TGTGGTGGTTTTAGGTACTCCTTT 59.833 41.667 0.00 0.00 42.12 3.11
346 347 5.135383 GTGGTGGTTTTAGGTACTCCTTTT 58.865 41.667 0.00 0.00 42.12 2.27
347 348 5.009310 GTGGTGGTTTTAGGTACTCCTTTTG 59.991 44.000 0.00 0.00 42.12 2.44
348 349 5.104024 TGGTGGTTTTAGGTACTCCTTTTGA 60.104 40.000 0.00 0.00 42.12 2.69
350 351 6.293698 GTGGTTTTAGGTACTCCTTTTGAGA 58.706 40.000 0.00 0.00 44.42 3.27
351 352 6.204301 GTGGTTTTAGGTACTCCTTTTGAGAC 59.796 42.308 0.00 0.00 44.42 3.36
352 353 5.407691 GGTTTTAGGTACTCCTTTTGAGACG 59.592 44.000 0.00 0.00 44.42 4.18
353 354 6.218746 GTTTTAGGTACTCCTTTTGAGACGA 58.781 40.000 0.00 0.00 44.42 4.20
354 355 5.640189 TTAGGTACTCCTTTTGAGACGAG 57.360 43.478 0.00 0.00 44.42 4.18
355 356 3.764218 AGGTACTCCTTTTGAGACGAGA 58.236 45.455 0.00 0.00 44.42 4.04
375 376 5.705902 GAGAAGCTCGAAAACTACTCTCTT 58.294 41.667 0.00 0.00 0.00 2.85
376 377 6.091718 AGAAGCTCGAAAACTACTCTCTTT 57.908 37.500 0.00 0.00 0.00 2.52
377 378 5.923684 AGAAGCTCGAAAACTACTCTCTTTG 59.076 40.000 0.00 0.00 0.00 2.77
397 398 4.787260 TGTCCCATAATATAAGCGCGTA 57.213 40.909 8.43 5.30 0.00 4.42
453 454 7.921745 GCTCTTATATTAGGAATATCGGGTCAC 59.078 40.741 0.00 0.00 35.72 3.67
549 556 0.250727 CAAATCTGGTCCGTGGTGGT 60.251 55.000 0.00 0.00 39.52 4.16
554 561 2.344872 GGTCCGTGGTGGTGGTAC 59.655 66.667 0.00 0.00 39.52 3.34
559 566 2.858862 CGTGGTGGTGGTACGTCCA 61.859 63.158 0.00 0.00 45.01 4.02
567 576 1.909781 TGGTACGTCCAGTCCCCAC 60.910 63.158 0.00 0.00 41.93 4.61
592 601 1.095807 GCACATAGGCCCCTTTCGAC 61.096 60.000 0.00 0.00 0.00 4.20
6383 7016 7.661536 ATATTTGTTCACTACTCCTGCTAGA 57.338 36.000 0.00 0.00 0.00 2.43
6393 7026 2.158842 ACTCCTGCTAGACATGCCAATC 60.159 50.000 0.00 0.00 0.00 2.67
6402 7035 3.900941 AGACATGCCAATCACGAAAAAC 58.099 40.909 0.00 0.00 0.00 2.43
6411 7044 7.598278 TGCCAATCACGAAAAACAAAGTATAT 58.402 30.769 0.00 0.00 0.00 0.86
6444 7077 5.069119 AGAGATTGCCAGTGTATTCGTGATA 59.931 40.000 0.00 0.00 0.00 2.15
6463 7096 6.019075 CGTGATATGATTTTCTACTTCGGCAA 60.019 38.462 0.00 0.00 0.00 4.52
6536 7169 8.050778 TGCTACTTTTCGATGATTTTACCATT 57.949 30.769 0.00 0.00 0.00 3.16
6645 7441 9.425577 GATGCCTAGTTACCATCTAAATACTTC 57.574 37.037 0.00 0.00 34.12 3.01
6789 7585 7.148188 ACACATTATGAAGCAACACTGGAATAG 60.148 37.037 0.00 0.00 0.00 1.73
6899 7695 8.912988 ACCTATGAGCAGATAGAATAAGCTATC 58.087 37.037 0.00 0.00 44.50 2.08
7015 7830 7.711339 AGTCGAAACTTGAAATAACTTCTGAGT 59.289 33.333 0.00 0.00 34.59 3.41
7257 8072 0.768221 ACCCTGGGTCAGAGCAGAAA 60.768 55.000 14.05 0.00 32.44 2.52
7458 8276 1.281867 CTGCAGGGGTGTTGATTAGGA 59.718 52.381 5.57 0.00 0.00 2.94
7529 8347 1.221293 CAGGGAGCCAGCTCTTCTG 59.779 63.158 18.54 19.60 42.38 3.02
7661 8479 2.205074 GATCAACCGCCAGATGTAGTG 58.795 52.381 0.00 0.00 0.00 2.74
7821 8639 2.369394 CAGAATGGCTTGTCCCTTACC 58.631 52.381 0.00 0.00 0.00 2.85
7938 8759 6.998802 AGCTTTCATCTTGAGTGTAGTACTT 58.001 36.000 0.00 0.00 40.53 2.24
7978 8799 8.883731 GTGAAGTTGAAGCATACATACAGTAAT 58.116 33.333 0.00 0.00 36.05 1.89
8058 8891 1.271325 TGTGCACCCAGTTGTGATAGG 60.271 52.381 15.69 0.00 38.55 2.57
8192 9025 5.878406 TCTTTCATGATTCTACTCCCTCC 57.122 43.478 0.00 0.00 0.00 4.30
8198 9031 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
8210 9043 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
8260 9093 8.947055 AAAACGTTCTTATATTATGGTACGGT 57.053 30.769 0.00 0.00 32.54 4.83
8268 9101 8.117956 TCTTATATTATGGTACGGTGGGAGTAT 58.882 37.037 0.00 0.00 0.00 2.12
8287 9120 9.016438 GGGAGTATGTTTCTTTGGTAATTTGTA 57.984 33.333 0.00 0.00 0.00 2.41
8383 9217 5.233689 GGAGACATTTTGTGCCGTATAGTAC 59.766 44.000 0.00 0.00 0.00 2.73
8384 9218 5.726397 AGACATTTTGTGCCGTATAGTACA 58.274 37.500 0.00 0.00 0.00 2.90
8394 9228 3.714391 CCGTATAGTACAACTTGCCCTC 58.286 50.000 0.00 0.00 0.00 4.30
8408 9242 1.559682 TGCCCTCTGTACTGGGAATTC 59.440 52.381 18.81 0.00 46.15 2.17
8489 9323 8.122952 GGAATGTAAACCTCGAATAGTTGAATG 58.877 37.037 0.00 0.00 0.00 2.67
8503 9337 9.547753 GAATAGTTGAATGTAGCTTCCTGAATA 57.452 33.333 0.00 0.00 0.00 1.75
8506 9340 7.341805 AGTTGAATGTAGCTTCCTGAATATGT 58.658 34.615 0.00 0.00 0.00 2.29
8507 9341 7.281774 AGTTGAATGTAGCTTCCTGAATATGTG 59.718 37.037 0.00 0.00 0.00 3.21
8546 9380 6.690530 CAATTGTTTTGGATTGCTCCTTAGA 58.309 36.000 0.00 0.00 42.59 2.10
8587 9421 5.789643 ATCCTTAGCATGTGTGTTGTTTT 57.210 34.783 0.00 0.00 0.00 2.43
8598 9432 3.932089 GTGTGTTGTTTTTGCTCCATTGT 59.068 39.130 0.00 0.00 0.00 2.71
8634 9468 2.411547 GCACTGTAGATGCAAACGTGAC 60.412 50.000 17.54 7.60 42.88 3.67
8636 9470 2.287970 ACTGTAGATGCAAACGTGACGA 60.288 45.455 13.70 0.00 0.00 4.20
8652 9486 0.900182 ACGATGAGTCTGTCCTGGCA 60.900 55.000 0.00 0.00 0.00 4.92
8666 9500 2.743928 GGCACACAAGGAGAGCCG 60.744 66.667 0.00 0.00 39.96 5.52
8674 9543 1.841556 AAGGAGAGCCGGTGTCCAA 60.842 57.895 15.56 0.00 41.41 3.53
8677 9546 0.322546 GGAGAGCCGGTGTCCAAATT 60.323 55.000 8.84 0.00 38.57 1.82
8678 9547 0.804989 GAGAGCCGGTGTCCAAATTG 59.195 55.000 1.90 0.00 0.00 2.32
8710 9579 4.519540 GAGCATCTCTAGTTCATCCTCC 57.480 50.000 0.00 0.00 0.00 4.30
8711 9580 3.894427 GAGCATCTCTAGTTCATCCTCCA 59.106 47.826 0.00 0.00 0.00 3.86
8716 9585 6.014669 GCATCTCTAGTTCATCCTCCATAACT 60.015 42.308 0.00 0.00 36.26 2.24
8743 9612 4.354208 TCTCCATTCTATCCCCTATCCC 57.646 50.000 0.00 0.00 0.00 3.85
8773 9644 8.477419 TTGTGGAATTAAACCTTCATCTTCTT 57.523 30.769 4.19 0.00 0.00 2.52
8774 9645 7.885297 TGTGGAATTAAACCTTCATCTTCTTG 58.115 34.615 4.19 0.00 0.00 3.02
8778 9649 7.310052 GGAATTAAACCTTCATCTTCTTGCCTT 60.310 37.037 0.00 0.00 0.00 4.35
8784 9655 3.356529 TCATCTTCTTGCCTTTCTCCC 57.643 47.619 0.00 0.00 0.00 4.30
8799 9670 1.841919 TCTCCCGAAACTTAATCCCCC 59.158 52.381 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.362399 ATCAGGTGAGGTCGCGCAG 62.362 63.158 8.75 0.00 0.00 5.18
13 14 3.356639 GATCAGGTGAGGTCGCGCA 62.357 63.158 8.75 0.00 0.00 6.09
14 15 2.583593 GATCAGGTGAGGTCGCGC 60.584 66.667 0.00 0.00 0.00 6.86
15 16 2.105128 GGATCAGGTGAGGTCGCG 59.895 66.667 0.00 0.00 0.00 5.87
16 17 2.105128 CGGATCAGGTGAGGTCGC 59.895 66.667 0.00 0.00 0.00 5.19
17 18 2.786495 CCCGGATCAGGTGAGGTCG 61.786 68.421 11.19 0.00 0.00 4.79
18 19 1.686110 ACCCGGATCAGGTGAGGTC 60.686 63.158 11.19 0.00 35.85 3.85
19 20 2.450243 ACCCGGATCAGGTGAGGT 59.550 61.111 11.19 0.00 35.85 3.85
33 34 2.100631 CGTGTCTTCATCGGCACCC 61.101 63.158 0.00 0.00 0.00 4.61
34 35 2.740714 GCGTGTCTTCATCGGCACC 61.741 63.158 0.00 0.00 0.00 5.01
35 36 2.740714 GGCGTGTCTTCATCGGCAC 61.741 63.158 5.57 0.00 46.44 5.01
36 37 2.434185 GGCGTGTCTTCATCGGCA 60.434 61.111 5.57 0.00 46.44 5.69
37 38 3.195698 GGGCGTGTCTTCATCGGC 61.196 66.667 0.00 0.00 46.46 5.54
38 39 0.104120 TATGGGCGTGTCTTCATCGG 59.896 55.000 0.00 0.00 0.00 4.18
39 40 1.491670 CTATGGGCGTGTCTTCATCG 58.508 55.000 0.00 0.00 0.00 3.84
40 41 1.221414 GCTATGGGCGTGTCTTCATC 58.779 55.000 0.00 0.00 0.00 2.92
41 42 0.541392 TGCTATGGGCGTGTCTTCAT 59.459 50.000 0.00 0.00 45.43 2.57
42 43 0.541392 ATGCTATGGGCGTGTCTTCA 59.459 50.000 0.00 0.00 45.43 3.02
43 44 3.386543 ATGCTATGGGCGTGTCTTC 57.613 52.632 0.00 0.00 45.43 2.87
49 50 1.202114 CAACAAACATGCTATGGGCGT 59.798 47.619 0.00 0.00 45.43 5.68
50 51 1.472082 TCAACAAACATGCTATGGGCG 59.528 47.619 0.00 0.00 45.43 6.13
51 52 3.591196 TTCAACAAACATGCTATGGGC 57.409 42.857 0.00 0.00 42.22 5.36
52 53 4.330620 GCATTTCAACAAACATGCTATGGG 59.669 41.667 0.00 0.00 28.65 4.00
53 54 4.330620 GGCATTTCAACAAACATGCTATGG 59.669 41.667 0.00 0.00 30.98 2.74
54 55 4.330620 GGGCATTTCAACAAACATGCTATG 59.669 41.667 0.00 0.00 30.98 2.23
55 56 4.020396 TGGGCATTTCAACAAACATGCTAT 60.020 37.500 0.00 0.00 30.98 2.97
56 57 3.323115 TGGGCATTTCAACAAACATGCTA 59.677 39.130 0.00 0.00 30.98 3.49
57 58 2.104451 TGGGCATTTCAACAAACATGCT 59.896 40.909 0.00 0.00 30.98 3.79
58 59 2.492012 TGGGCATTTCAACAAACATGC 58.508 42.857 0.00 0.00 29.87 4.06
59 60 6.164876 TCTTATGGGCATTTCAACAAACATG 58.835 36.000 0.00 0.00 0.00 3.21
60 61 6.357579 TCTTATGGGCATTTCAACAAACAT 57.642 33.333 0.00 0.00 0.00 2.71
61 62 5.798125 TCTTATGGGCATTTCAACAAACA 57.202 34.783 0.00 0.00 0.00 2.83
62 63 7.489574 TTTTCTTATGGGCATTTCAACAAAC 57.510 32.000 0.00 0.00 0.00 2.93
63 64 8.566260 CAATTTTCTTATGGGCATTTCAACAAA 58.434 29.630 0.00 0.00 0.00 2.83
64 65 7.174599 CCAATTTTCTTATGGGCATTTCAACAA 59.825 33.333 0.00 0.00 0.00 2.83
65 66 6.654161 CCAATTTTCTTATGGGCATTTCAACA 59.346 34.615 0.00 0.00 0.00 3.33
66 67 6.878389 TCCAATTTTCTTATGGGCATTTCAAC 59.122 34.615 0.00 0.00 34.89 3.18
67 68 7.013823 TCCAATTTTCTTATGGGCATTTCAA 57.986 32.000 0.00 0.00 34.89 2.69
68 69 6.440010 TCTCCAATTTTCTTATGGGCATTTCA 59.560 34.615 0.00 0.00 34.89 2.69
69 70 6.877236 TCTCCAATTTTCTTATGGGCATTTC 58.123 36.000 0.00 0.00 34.89 2.17
70 71 6.669154 TCTCTCCAATTTTCTTATGGGCATTT 59.331 34.615 0.00 0.00 34.89 2.32
71 72 6.197168 TCTCTCCAATTTTCTTATGGGCATT 58.803 36.000 0.00 0.00 34.89 3.56
72 73 5.769835 TCTCTCCAATTTTCTTATGGGCAT 58.230 37.500 0.00 0.00 34.89 4.40
73 74 5.044919 TCTCTCTCCAATTTTCTTATGGGCA 60.045 40.000 0.00 0.00 34.89 5.36
74 75 5.440610 TCTCTCTCCAATTTTCTTATGGGC 58.559 41.667 0.00 0.00 34.89 5.36
75 76 7.831193 TCTTTCTCTCTCCAATTTTCTTATGGG 59.169 37.037 0.00 0.00 34.89 4.00
76 77 8.798859 TCTTTCTCTCTCCAATTTTCTTATGG 57.201 34.615 0.00 0.00 35.49 2.74
80 81 8.986929 TTCTTCTTTCTCTCTCCAATTTTCTT 57.013 30.769 0.00 0.00 0.00 2.52
81 82 8.435982 TCTTCTTCTTTCTCTCTCCAATTTTCT 58.564 33.333 0.00 0.00 0.00 2.52
82 83 8.503196 GTCTTCTTCTTTCTCTCTCCAATTTTC 58.497 37.037 0.00 0.00 0.00 2.29
83 84 8.217111 AGTCTTCTTCTTTCTCTCTCCAATTTT 58.783 33.333 0.00 0.00 0.00 1.82
84 85 7.744733 AGTCTTCTTCTTTCTCTCTCCAATTT 58.255 34.615 0.00 0.00 0.00 1.82
85 86 7.235399 AGAGTCTTCTTCTTTCTCTCTCCAATT 59.765 37.037 0.00 0.00 30.98 2.32
86 87 6.725834 AGAGTCTTCTTCTTTCTCTCTCCAAT 59.274 38.462 0.00 0.00 30.98 3.16
87 88 6.074648 AGAGTCTTCTTCTTTCTCTCTCCAA 58.925 40.000 0.00 0.00 30.98 3.53
88 89 5.640147 AGAGTCTTCTTCTTTCTCTCTCCA 58.360 41.667 0.00 0.00 30.98 3.86
89 90 6.884836 ACTAGAGTCTTCTTCTTTCTCTCTCC 59.115 42.308 0.00 0.00 36.90 3.71
90 91 7.606456 TGACTAGAGTCTTCTTCTTTCTCTCTC 59.394 40.741 10.87 0.00 44.99 3.20
91 92 7.458397 TGACTAGAGTCTTCTTCTTTCTCTCT 58.542 38.462 10.87 0.00 44.99 3.10
92 93 7.681939 TGACTAGAGTCTTCTTCTTTCTCTC 57.318 40.000 10.87 0.00 44.99 3.20
93 94 8.522830 CAATGACTAGAGTCTTCTTCTTTCTCT 58.477 37.037 10.87 0.00 44.99 3.10
94 95 8.519526 TCAATGACTAGAGTCTTCTTCTTTCTC 58.480 37.037 10.87 0.00 44.99 2.87
95 96 8.303876 GTCAATGACTAGAGTCTTCTTCTTTCT 58.696 37.037 6.07 0.00 44.99 2.52
96 97 8.085296 TGTCAATGACTAGAGTCTTCTTCTTTC 58.915 37.037 14.97 0.00 44.99 2.62
97 98 7.957002 TGTCAATGACTAGAGTCTTCTTCTTT 58.043 34.615 14.97 0.00 44.99 2.52
98 99 7.309744 CCTGTCAATGACTAGAGTCTTCTTCTT 60.310 40.741 14.97 0.00 44.99 2.52
99 100 6.152661 CCTGTCAATGACTAGAGTCTTCTTCT 59.847 42.308 14.97 0.00 44.99 2.85
100 101 6.071616 ACCTGTCAATGACTAGAGTCTTCTTC 60.072 42.308 14.97 0.00 44.99 2.87
101 102 5.777732 ACCTGTCAATGACTAGAGTCTTCTT 59.222 40.000 14.97 0.27 44.99 2.52
102 103 5.184864 CACCTGTCAATGACTAGAGTCTTCT 59.815 44.000 14.97 0.00 44.99 2.85
103 104 5.406649 CACCTGTCAATGACTAGAGTCTTC 58.593 45.833 14.97 0.00 44.99 2.87
104 105 4.221703 CCACCTGTCAATGACTAGAGTCTT 59.778 45.833 14.97 1.97 44.99 3.01
105 106 3.766591 CCACCTGTCAATGACTAGAGTCT 59.233 47.826 14.97 0.00 44.99 3.24
106 107 3.118956 CCCACCTGTCAATGACTAGAGTC 60.119 52.174 14.97 2.56 44.97 3.36
107 108 2.834549 CCCACCTGTCAATGACTAGAGT 59.165 50.000 14.97 3.94 33.15 3.24
108 109 2.169352 CCCCACCTGTCAATGACTAGAG 59.831 54.545 14.97 3.69 33.15 2.43
109 110 2.187958 CCCCACCTGTCAATGACTAGA 58.812 52.381 14.97 0.00 33.15 2.43
110 111 1.407437 GCCCCACCTGTCAATGACTAG 60.407 57.143 14.97 9.84 33.15 2.57
111 112 0.618458 GCCCCACCTGTCAATGACTA 59.382 55.000 14.97 0.48 33.15 2.59
112 113 1.380302 GCCCCACCTGTCAATGACT 59.620 57.895 14.97 0.00 33.15 3.41
113 114 1.678970 GGCCCCACCTGTCAATGAC 60.679 63.158 6.41 6.41 34.51 3.06
114 115 2.763215 GGCCCCACCTGTCAATGA 59.237 61.111 0.00 0.00 34.51 2.57
115 116 2.362889 GGGCCCCACCTGTCAATG 60.363 66.667 12.23 0.00 39.10 2.82
116 117 2.535317 AGGGCCCCACCTGTCAAT 60.535 61.111 21.43 0.00 40.04 2.57
117 118 3.256960 GAGGGCCCCACCTGTCAA 61.257 66.667 21.43 0.00 42.10 3.18
124 125 4.717313 GTTGGACGAGGGCCCCAC 62.717 72.222 21.43 12.78 0.00 4.61
125 126 4.974438 AGTTGGACGAGGGCCCCA 62.974 66.667 21.43 5.71 0.00 4.96
126 127 4.097361 GAGTTGGACGAGGGCCCC 62.097 72.222 21.43 9.47 0.00 5.80
127 128 3.316573 CTGAGTTGGACGAGGGCCC 62.317 68.421 16.46 16.46 0.00 5.80
128 129 1.255667 TACTGAGTTGGACGAGGGCC 61.256 60.000 0.00 0.00 0.00 5.80
129 130 0.606604 TTACTGAGTTGGACGAGGGC 59.393 55.000 0.00 0.00 0.00 5.19
130 131 3.611766 ATTTACTGAGTTGGACGAGGG 57.388 47.619 0.00 0.00 0.00 4.30
131 132 4.315803 ACAATTTACTGAGTTGGACGAGG 58.684 43.478 0.00 0.00 0.00 4.63
132 133 4.389077 GGACAATTTACTGAGTTGGACGAG 59.611 45.833 0.00 0.00 0.00 4.18
133 134 4.202274 TGGACAATTTACTGAGTTGGACGA 60.202 41.667 0.00 0.00 0.00 4.20
134 135 4.062293 TGGACAATTTACTGAGTTGGACG 58.938 43.478 0.00 0.00 0.00 4.79
135 136 4.819630 TGTGGACAATTTACTGAGTTGGAC 59.180 41.667 0.00 0.00 0.00 4.02
136 137 4.819630 GTGTGGACAATTTACTGAGTTGGA 59.180 41.667 0.00 0.00 0.00 3.53
137 138 4.578516 TGTGTGGACAATTTACTGAGTTGG 59.421 41.667 0.00 0.00 0.00 3.77
138 139 5.749596 TGTGTGGACAATTTACTGAGTTG 57.250 39.130 0.00 0.00 0.00 3.16
139 140 5.221048 GCTTGTGTGGACAATTTACTGAGTT 60.221 40.000 0.00 0.00 41.33 3.01
140 141 4.275936 GCTTGTGTGGACAATTTACTGAGT 59.724 41.667 0.00 0.00 41.33 3.41
141 142 4.275689 TGCTTGTGTGGACAATTTACTGAG 59.724 41.667 0.00 0.00 41.33 3.35
142 143 4.036262 GTGCTTGTGTGGACAATTTACTGA 59.964 41.667 0.00 0.00 41.33 3.41
143 144 4.290155 GTGCTTGTGTGGACAATTTACTG 58.710 43.478 0.00 0.00 41.33 2.74
144 145 3.003275 CGTGCTTGTGTGGACAATTTACT 59.997 43.478 0.00 0.00 41.33 2.24
145 146 3.296628 CGTGCTTGTGTGGACAATTTAC 58.703 45.455 0.00 0.00 41.33 2.01
146 147 2.287308 GCGTGCTTGTGTGGACAATTTA 60.287 45.455 0.00 0.00 41.33 1.40
147 148 1.535860 GCGTGCTTGTGTGGACAATTT 60.536 47.619 0.00 0.00 41.33 1.82
148 149 0.030638 GCGTGCTTGTGTGGACAATT 59.969 50.000 0.00 0.00 41.33 2.32
149 150 1.654220 GCGTGCTTGTGTGGACAAT 59.346 52.632 0.00 0.00 41.33 2.71
150 151 2.477176 GGCGTGCTTGTGTGGACAA 61.477 57.895 0.00 0.00 39.88 3.18
151 152 2.899838 GGCGTGCTTGTGTGGACA 60.900 61.111 0.00 0.00 0.00 4.02
152 153 2.899838 TGGCGTGCTTGTGTGGAC 60.900 61.111 0.00 0.00 0.00 4.02
153 154 2.899838 GTGGCGTGCTTGTGTGGA 60.900 61.111 0.00 0.00 0.00 4.02
154 155 4.312231 CGTGGCGTGCTTGTGTGG 62.312 66.667 0.00 0.00 0.00 4.17
155 156 3.506312 GACGTGGCGTGCTTGTGTG 62.506 63.158 0.00 0.00 41.37 3.82
156 157 3.269347 GACGTGGCGTGCTTGTGT 61.269 61.111 0.00 0.00 41.37 3.72
157 158 3.227372 CTGACGTGGCGTGCTTGTG 62.227 63.158 0.00 0.00 41.37 3.33
158 159 2.967076 CTGACGTGGCGTGCTTGT 60.967 61.111 0.00 0.00 41.37 3.16
159 160 4.374702 GCTGACGTGGCGTGCTTG 62.375 66.667 0.00 0.00 41.37 4.01
170 171 4.742201 CCACCTGACGGGCTGACG 62.742 72.222 0.00 0.00 39.10 4.35
171 172 4.394712 CCCACCTGACGGGCTGAC 62.395 72.222 0.00 0.00 36.72 3.51
172 173 4.631740 TCCCACCTGACGGGCTGA 62.632 66.667 0.00 0.00 44.11 4.26
173 174 4.394712 GTCCCACCTGACGGGCTG 62.395 72.222 0.00 0.00 44.11 4.85
194 195 3.652292 AAAAAGCAAAACCGACGGG 57.348 47.368 20.00 0.56 40.11 5.28
209 210 7.982354 ACTGATTGTTTAATTTGGTCGGAAAAA 59.018 29.630 0.00 0.00 0.00 1.94
210 211 7.436673 CACTGATTGTTTAATTTGGTCGGAAAA 59.563 33.333 0.00 0.00 0.00 2.29
211 212 6.920758 CACTGATTGTTTAATTTGGTCGGAAA 59.079 34.615 0.00 0.00 0.00 3.13
212 213 6.442952 CACTGATTGTTTAATTTGGTCGGAA 58.557 36.000 0.00 0.00 0.00 4.30
213 214 5.563867 GCACTGATTGTTTAATTTGGTCGGA 60.564 40.000 0.00 0.00 0.00 4.55
214 215 4.621034 GCACTGATTGTTTAATTTGGTCGG 59.379 41.667 0.00 0.00 0.00 4.79
215 216 5.460646 AGCACTGATTGTTTAATTTGGTCG 58.539 37.500 0.00 0.00 0.00 4.79
216 217 5.863935 GGAGCACTGATTGTTTAATTTGGTC 59.136 40.000 0.00 0.00 32.87 4.02
217 218 5.564651 CGGAGCACTGATTGTTTAATTTGGT 60.565 40.000 0.00 0.00 0.00 3.67
218 219 4.858692 CGGAGCACTGATTGTTTAATTTGG 59.141 41.667 0.00 0.00 0.00 3.28
219 220 5.997732 CGGAGCACTGATTGTTTAATTTG 57.002 39.130 0.00 0.00 0.00 2.32
237 238 2.221055 GTGCCTAATCAATAACGCGGAG 59.779 50.000 12.47 0.00 0.00 4.63
238 239 2.206750 GTGCCTAATCAATAACGCGGA 58.793 47.619 12.47 0.00 0.00 5.54
239 240 1.937223 TGTGCCTAATCAATAACGCGG 59.063 47.619 12.47 0.00 0.00 6.46
240 241 2.863740 TCTGTGCCTAATCAATAACGCG 59.136 45.455 3.53 3.53 0.00 6.01
241 242 3.871594 ACTCTGTGCCTAATCAATAACGC 59.128 43.478 0.00 0.00 0.00 4.84
242 243 5.220662 CCAACTCTGTGCCTAATCAATAACG 60.221 44.000 0.00 0.00 0.00 3.18
243 244 5.648092 ACCAACTCTGTGCCTAATCAATAAC 59.352 40.000 0.00 0.00 0.00 1.89
244 245 5.647658 CACCAACTCTGTGCCTAATCAATAA 59.352 40.000 0.00 0.00 0.00 1.40
245 246 5.045942 TCACCAACTCTGTGCCTAATCAATA 60.046 40.000 0.00 0.00 33.71 1.90
246 247 4.012374 CACCAACTCTGTGCCTAATCAAT 58.988 43.478 0.00 0.00 0.00 2.57
247 248 3.072330 TCACCAACTCTGTGCCTAATCAA 59.928 43.478 0.00 0.00 33.71 2.57
248 249 2.637382 TCACCAACTCTGTGCCTAATCA 59.363 45.455 0.00 0.00 33.71 2.57
249 250 3.334583 TCACCAACTCTGTGCCTAATC 57.665 47.619 0.00 0.00 33.71 1.75
250 251 4.307032 AATCACCAACTCTGTGCCTAAT 57.693 40.909 0.00 0.00 33.71 1.73
251 252 3.788227 AATCACCAACTCTGTGCCTAA 57.212 42.857 0.00 0.00 33.71 2.69
252 253 3.788227 AAATCACCAACTCTGTGCCTA 57.212 42.857 0.00 0.00 33.71 3.93
253 254 2.664402 AAATCACCAACTCTGTGCCT 57.336 45.000 0.00 0.00 33.71 4.75
254 255 3.733443 AAAAATCACCAACTCTGTGCC 57.267 42.857 0.00 0.00 33.71 5.01
271 272 3.450457 ACATTTGAGTCAGGGCACAAAAA 59.550 39.130 0.91 0.00 36.19 1.94
272 273 3.030291 ACATTTGAGTCAGGGCACAAAA 58.970 40.909 0.91 0.00 36.19 2.44
273 274 2.361757 CACATTTGAGTCAGGGCACAAA 59.638 45.455 0.00 0.00 36.82 2.83
274 275 1.955778 CACATTTGAGTCAGGGCACAA 59.044 47.619 0.00 0.00 0.00 3.33
275 276 1.142667 TCACATTTGAGTCAGGGCACA 59.857 47.619 0.00 0.00 0.00 4.57
276 277 1.896220 TCACATTTGAGTCAGGGCAC 58.104 50.000 0.00 0.00 0.00 5.01
277 278 2.885135 ATCACATTTGAGTCAGGGCA 57.115 45.000 0.00 0.00 34.35 5.36
278 279 4.454678 TGATATCACATTTGAGTCAGGGC 58.545 43.478 0.00 0.00 34.35 5.19
279 280 6.118170 ACTTGATATCACATTTGAGTCAGGG 58.882 40.000 4.48 7.04 34.39 4.45
280 281 7.120285 ACAACTTGATATCACATTTGAGTCAGG 59.880 37.037 19.75 10.27 35.36 3.86
281 282 8.037382 ACAACTTGATATCACATTTGAGTCAG 57.963 34.615 19.75 12.22 33.95 3.51
282 283 7.984422 ACAACTTGATATCACATTTGAGTCA 57.016 32.000 19.75 0.00 34.35 3.41
283 284 9.760660 GTAACAACTTGATATCACATTTGAGTC 57.239 33.333 19.75 9.91 34.35 3.36
284 285 8.730680 GGTAACAACTTGATATCACATTTGAGT 58.269 33.333 19.75 11.62 34.35 3.41
285 286 8.184192 GGGTAACAACTTGATATCACATTTGAG 58.816 37.037 19.75 11.10 34.01 3.02
286 287 7.888021 AGGGTAACAACTTGATATCACATTTGA 59.112 33.333 19.75 0.98 39.74 2.69
287 288 8.055279 AGGGTAACAACTTGATATCACATTTG 57.945 34.615 4.48 11.03 39.74 2.32
288 289 9.747898 TTAGGGTAACAACTTGATATCACATTT 57.252 29.630 4.48 0.00 39.74 2.32
289 290 9.174166 GTTAGGGTAACAACTTGATATCACATT 57.826 33.333 4.48 0.00 38.52 2.71
290 291 8.325787 TGTTAGGGTAACAACTTGATATCACAT 58.674 33.333 4.48 0.00 44.95 3.21
291 292 7.681679 TGTTAGGGTAACAACTTGATATCACA 58.318 34.615 4.48 0.00 44.95 3.58
304 305 3.433882 CCACACTTGGTGTTAGGGTAACA 60.434 47.826 0.19 0.00 45.08 2.41
305 306 3.143728 CCACACTTGGTGTTAGGGTAAC 58.856 50.000 0.19 0.00 45.08 2.50
306 307 3.495434 CCACACTTGGTGTTAGGGTAA 57.505 47.619 0.19 0.00 45.08 2.85
318 319 4.457466 AGTACCTAAAACCACCACACTTG 58.543 43.478 0.00 0.00 0.00 3.16
319 320 4.445305 GGAGTACCTAAAACCACCACACTT 60.445 45.833 0.00 0.00 0.00 3.16
320 321 3.072038 GGAGTACCTAAAACCACCACACT 59.928 47.826 0.00 0.00 0.00 3.55
321 322 3.072038 AGGAGTACCTAAAACCACCACAC 59.928 47.826 0.00 0.00 45.83 3.82
322 323 3.320129 AGGAGTACCTAAAACCACCACA 58.680 45.455 0.00 0.00 45.83 4.17
335 336 4.487019 CTTCTCGTCTCAAAAGGAGTACC 58.513 47.826 0.00 0.00 44.40 3.34
336 337 3.921630 GCTTCTCGTCTCAAAAGGAGTAC 59.078 47.826 0.00 0.00 44.40 2.73
337 338 3.827302 AGCTTCTCGTCTCAAAAGGAGTA 59.173 43.478 0.00 0.00 44.40 2.59
338 339 2.630580 AGCTTCTCGTCTCAAAAGGAGT 59.369 45.455 0.00 0.00 44.40 3.85
339 340 3.249917 GAGCTTCTCGTCTCAAAAGGAG 58.750 50.000 0.00 0.00 45.49 3.69
340 341 3.305398 GAGCTTCTCGTCTCAAAAGGA 57.695 47.619 0.00 0.00 0.00 3.36
352 353 5.305139 AGAGAGTAGTTTTCGAGCTTCTC 57.695 43.478 10.24 10.24 31.87 2.87
353 354 5.715434 AAGAGAGTAGTTTTCGAGCTTCT 57.285 39.130 0.00 0.00 0.00 2.85
354 355 5.692654 ACAAAGAGAGTAGTTTTCGAGCTTC 59.307 40.000 0.00 0.00 0.00 3.86
355 356 5.602628 ACAAAGAGAGTAGTTTTCGAGCTT 58.397 37.500 0.00 0.00 0.00 3.74
377 378 6.311935 TCAAATACGCGCTTATATTATGGGAC 59.688 38.462 5.73 0.00 0.00 4.46
491 492 9.231297 CAGGGTTGTCTATTTGAAAGAGAATAA 57.769 33.333 3.56 0.74 30.06 1.40
554 561 0.889186 CTTTTGGTGGGGACTGGACG 60.889 60.000 0.00 0.00 0.00 4.79
559 566 0.188342 ATGTGCTTTTGGTGGGGACT 59.812 50.000 0.00 0.00 0.00 3.85
560 567 1.818674 CTATGTGCTTTTGGTGGGGAC 59.181 52.381 0.00 0.00 0.00 4.46
561 568 1.272425 CCTATGTGCTTTTGGTGGGGA 60.272 52.381 0.00 0.00 0.00 4.81
563 570 0.532115 GCCTATGTGCTTTTGGTGGG 59.468 55.000 0.00 0.00 0.00 4.61
567 576 0.324645 AGGGGCCTATGTGCTTTTGG 60.325 55.000 0.84 0.00 0.00 3.28
592 601 1.071471 ACTGGGTTGTGAAGGAGCG 59.929 57.895 0.00 0.00 0.00 5.03
738 749 3.081804 GAGGAAGCCGAGAATGGAAAAA 58.918 45.455 0.00 0.00 0.00 1.94
739 750 2.711542 GAGGAAGCCGAGAATGGAAAA 58.288 47.619 0.00 0.00 0.00 2.29
6378 7011 1.939974 TCGTGATTGGCATGTCTAGC 58.060 50.000 0.00 0.00 35.00 3.42
6383 7016 3.724508 TGTTTTTCGTGATTGGCATGT 57.275 38.095 0.00 0.00 35.00 3.21
6411 7044 9.851686 AATACACTGGCAATCTCTCAATAATAA 57.148 29.630 0.00 0.00 0.00 1.40
6458 7091 4.330074 CCAAACATTCTAGACTACTTGCCG 59.670 45.833 0.00 0.00 0.00 5.69
6463 7096 9.014297 CCAATTTTCCAAACATTCTAGACTACT 57.986 33.333 0.00 0.00 0.00 2.57
6536 7169 2.438021 ACTCTGTCAGTTAAGTGGGCAA 59.562 45.455 10.39 0.00 26.56 4.52
6645 7441 2.098607 AGATGCATGCAAAGGATGAACG 59.901 45.455 26.68 0.00 0.00 3.95
6789 7585 1.400530 CGGTGACCTCATAGGACCCC 61.401 65.000 0.00 0.00 37.67 4.95
6858 7654 6.162777 GCTCATAGGTGGACTAGAAATGATC 58.837 44.000 0.00 0.00 34.56 2.92
6899 7695 4.154918 GTGGCAAAGAAGGTAGAATCTGTG 59.845 45.833 0.00 0.00 34.60 3.66
6989 7804 7.711339 ACTCAGAAGTTATTTCAAGTTTCGACT 59.289 33.333 0.00 0.00 38.31 4.18
7031 7846 5.155278 AGCATTGCATGAAAAATCAAGGA 57.845 34.783 11.91 0.00 0.00 3.36
7210 8025 1.755783 ATAGTGGTCCGACCGTCCC 60.756 63.158 13.02 1.15 42.58 4.46
7458 8276 1.818959 AATTGTGCCGTGCTGCCATT 61.819 50.000 0.00 0.00 0.00 3.16
7661 8479 2.159407 GCTCAGGAATTCTTTCAGCTGC 60.159 50.000 9.47 0.00 33.23 5.25
7964 8785 9.083080 TGAAAGAACGTCATTACTGTATGTATG 57.917 33.333 0.00 0.00 0.00 2.39
7978 8799 4.438148 TGTGAGATGTTGAAAGAACGTCA 58.562 39.130 8.95 0.00 38.34 4.35
8058 8891 5.585047 GGTCTATCCAGGTTTACATCACAAC 59.415 44.000 0.00 0.00 35.97 3.32
8114 8947 5.258051 AGTAAGTGAACAACCACCAAAGAA 58.742 37.500 0.00 0.00 37.76 2.52
8192 9025 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
8233 9066 9.640974 CCGTACCATAATATAAGAACGTTTTTG 57.359 33.333 13.87 0.00 0.00 2.44
8240 9073 6.996509 TCCCACCGTACCATAATATAAGAAC 58.003 40.000 0.00 0.00 0.00 3.01
8241 9074 6.783977 ACTCCCACCGTACCATAATATAAGAA 59.216 38.462 0.00 0.00 0.00 2.52
8250 9083 3.317455 ACATACTCCCACCGTACCATA 57.683 47.619 0.00 0.00 0.00 2.74
8251 9084 2.170012 ACATACTCCCACCGTACCAT 57.830 50.000 0.00 0.00 0.00 3.55
8255 9088 4.563993 CCAAAGAAACATACTCCCACCGTA 60.564 45.833 0.00 0.00 0.00 4.02
8260 9093 7.507616 ACAAATTACCAAAGAAACATACTCCCA 59.492 33.333 0.00 0.00 0.00 4.37
8383 9217 1.611673 CCCAGTACAGAGGGCAAGTTG 60.612 57.143 0.00 0.00 38.44 3.16
8384 9218 0.693049 CCCAGTACAGAGGGCAAGTT 59.307 55.000 5.28 0.00 38.44 2.66
8489 9323 3.491267 GCGACACATATTCAGGAAGCTAC 59.509 47.826 0.00 0.00 0.00 3.58
8503 9337 1.094785 GCCCTATGTTTGCGACACAT 58.905 50.000 0.00 6.88 42.04 3.21
8506 9340 1.832883 ATTGCCCTATGTTTGCGACA 58.167 45.000 0.00 0.00 43.71 4.35
8507 9341 2.094752 ACAATTGCCCTATGTTTGCGAC 60.095 45.455 5.05 0.00 0.00 5.19
8565 9399 5.789643 AAAACAACACACATGCTAAGGAT 57.210 34.783 0.00 0.00 0.00 3.24
8587 9421 3.691118 GCAGATAGACAACAATGGAGCAA 59.309 43.478 0.00 0.00 0.00 3.91
8598 9432 1.220749 GTGCCCGGCAGATAGACAA 59.779 57.895 13.92 0.00 40.08 3.18
8634 9468 0.459237 GTGCCAGGACAGACTCATCG 60.459 60.000 0.00 0.00 0.00 3.84
8636 9470 0.322975 GTGTGCCAGGACAGACTCAT 59.677 55.000 0.00 0.00 31.44 2.90
8644 9478 0.321122 CTCTCCTTGTGTGCCAGGAC 60.321 60.000 0.00 0.00 0.00 3.85
8652 9486 2.100879 GACACCGGCTCTCCTTGTGT 62.101 60.000 0.00 0.00 43.88 3.72
8666 9500 4.937201 AAGAAACTCCAATTTGGACACC 57.063 40.909 14.24 4.51 42.67 4.16
8674 9543 6.956497 AGAGATGCTCTAAGAAACTCCAATT 58.044 36.000 0.00 0.00 39.28 2.32
8677 9546 6.191315 ACTAGAGATGCTCTAAGAAACTCCA 58.809 40.000 0.00 0.00 41.74 3.86
8678 9547 6.709018 ACTAGAGATGCTCTAAGAAACTCC 57.291 41.667 0.00 0.00 41.74 3.85
8716 9585 8.836735 GGATAGGGGATAGAATGGAGAATTAAA 58.163 37.037 0.00 0.00 0.00 1.52
8723 9592 4.360425 AGGGATAGGGGATAGAATGGAG 57.640 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.