Multiple sequence alignment - TraesCS1A01G240000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G240000 chr1A 100.000 5645 0 0 1 5645 426934652 426929008 0.000000e+00 10425
1 TraesCS1A01G240000 chr1A 82.217 1299 164 36 3475 4754 465952743 465953993 0.000000e+00 1057
2 TraesCS1A01G240000 chr1A 82.309 537 62 24 2893 3403 465951846 465952375 8.690000e-118 435
3 TraesCS1A01G240000 chr1A 81.818 231 33 7 2414 2644 465951258 465951479 9.660000e-43 185
4 TraesCS1A01G240000 chr1B 95.458 3677 116 22 1414 5058 444790515 444786858 0.000000e+00 5818
5 TraesCS1A01G240000 chr1B 89.984 639 50 9 873 1506 487558586 487559215 0.000000e+00 813
6 TraesCS1A01G240000 chr1B 91.176 578 42 7 931 1506 143191682 143192252 0.000000e+00 776
7 TraesCS1A01G240000 chr1B 93.119 218 12 2 854 1069 444791491 444791275 3.280000e-82 316
8 TraesCS1A01G240000 chr1B 92.511 227 5 6 1112 1338 444790728 444790514 1.180000e-81 315
9 TraesCS1A01G240000 chr1B 83.660 306 31 9 470 773 444792250 444791962 2.590000e-68 270
10 TraesCS1A01G240000 chr1B 85.321 109 15 1 5065 5173 646915480 646915587 1.660000e-20 111
11 TraesCS1A01G240000 chr1D 94.336 2807 115 26 2286 5058 329739693 329736897 0.000000e+00 4263
12 TraesCS1A01G240000 chr1D 84.583 960 110 23 3702 4646 367139676 367140612 0.000000e+00 918
13 TraesCS1A01G240000 chr1D 92.262 504 23 6 860 1354 329741010 329740514 0.000000e+00 701
14 TraesCS1A01G240000 chr1D 88.727 479 38 5 1468 1946 329740290 329739828 6.340000e-159 571
15 TraesCS1A01G240000 chr1D 91.254 343 25 3 5304 5645 236089624 236089286 3.980000e-126 462
16 TraesCS1A01G240000 chr1D 89.600 125 12 1 453 576 329741679 329741555 2.110000e-34 158
17 TraesCS1A01G240000 chr6A 82.563 1233 154 35 3539 4754 429113683 429114871 0.000000e+00 1029
18 TraesCS1A01G240000 chr6A 86.976 453 54 4 1 450 604933507 604933057 6.530000e-139 505
19 TraesCS1A01G240000 chr6A 82.495 537 61 24 2893 3403 429104460 429104989 1.870000e-119 440
20 TraesCS1A01G240000 chr6A 81.818 231 33 7 2414 2644 429103872 429104093 9.660000e-43 185
21 TraesCS1A01G240000 chr3B 88.889 639 47 11 873 1506 80296560 80295941 0.000000e+00 765
22 TraesCS1A01G240000 chr3B 89.111 450 45 3 1 450 530994820 530994375 1.780000e-154 556
23 TraesCS1A01G240000 chr5D 84.968 632 79 15 3475 4095 15659829 15660455 1.340000e-175 627
24 TraesCS1A01G240000 chr6B 89.912 456 38 8 1 454 689124051 689123602 1.050000e-161 580
25 TraesCS1A01G240000 chrUn 89.693 456 40 7 1 454 349681416 349680966 4.900000e-160 575
26 TraesCS1A01G240000 chrUn 87.361 451 51 5 1 450 15861972 15862417 3.900000e-141 512
27 TraesCS1A01G240000 chr7D 89.800 451 43 3 1 450 148122427 148121979 4.900000e-160 575
28 TraesCS1A01G240000 chr7D 88.470 451 48 4 4 453 264333266 264332819 4.970000e-150 542
29 TraesCS1A01G240000 chr6D 89.955 448 42 3 4 450 12033028 12032583 4.900000e-160 575
30 TraesCS1A01G240000 chr5A 94.152 342 20 0 5304 5645 482322352 482322011 6.480000e-144 521
31 TraesCS1A01G240000 chr5A 93.878 343 20 1 5304 5645 482319170 482318828 3.020000e-142 516
32 TraesCS1A01G240000 chr5A 93.860 342 21 0 5304 5645 482329528 482329187 3.020000e-142 516
33 TraesCS1A01G240000 chr5A 93.860 342 21 0 5304 5645 482337054 482336713 3.020000e-142 516
34 TraesCS1A01G240000 chr5A 93.860 342 21 0 5304 5645 482344234 482343893 3.020000e-142 516
35 TraesCS1A01G240000 chr5A 93.989 183 11 0 5122 5304 482322635 482322453 1.550000e-70 278
36 TraesCS1A01G240000 chr5A 93.989 183 11 0 5122 5304 482337337 482337155 1.550000e-70 278
37 TraesCS1A01G240000 chr5A 93.443 183 12 0 5122 5304 482329811 482329629 7.210000e-69 272
38 TraesCS1A01G240000 chr5A 93.443 183 12 0 5122 5304 482344517 482344335 7.210000e-69 272
39 TraesCS1A01G240000 chr5A 95.683 139 6 0 5122 5260 482319733 482319595 2.050000e-54 224
40 TraesCS1A01G240000 chr2D 87.168 452 47 9 1 450 634643428 634642986 2.350000e-138 503
41 TraesCS1A01G240000 chr2B 84.274 496 43 15 2673 3139 253938773 253939262 8.620000e-123 451
42 TraesCS1A01G240000 chr4A 86.567 335 38 6 5306 5635 201578487 201578819 4.160000e-96 363
43 TraesCS1A01G240000 chr4A 90.909 55 5 0 5245 5299 201577637 201577691 2.180000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G240000 chr1A 426929008 426934652 5644 True 10425.00 10425 100.000000 1 5645 1 chr1A.!!$R1 5644
1 TraesCS1A01G240000 chr1A 465951258 465953993 2735 False 559.00 1057 82.114667 2414 4754 3 chr1A.!!$F1 2340
2 TraesCS1A01G240000 chr1B 444786858 444792250 5392 True 1679.75 5818 91.187000 470 5058 4 chr1B.!!$R1 4588
3 TraesCS1A01G240000 chr1B 487558586 487559215 629 False 813.00 813 89.984000 873 1506 1 chr1B.!!$F2 633
4 TraesCS1A01G240000 chr1B 143191682 143192252 570 False 776.00 776 91.176000 931 1506 1 chr1B.!!$F1 575
5 TraesCS1A01G240000 chr1D 329736897 329741679 4782 True 1423.25 4263 91.231250 453 5058 4 chr1D.!!$R2 4605
6 TraesCS1A01G240000 chr1D 367139676 367140612 936 False 918.00 918 84.583000 3702 4646 1 chr1D.!!$F1 944
7 TraesCS1A01G240000 chr6A 429113683 429114871 1188 False 1029.00 1029 82.563000 3539 4754 1 chr6A.!!$F1 1215
8 TraesCS1A01G240000 chr6A 429103872 429104989 1117 False 312.50 440 82.156500 2414 3403 2 chr6A.!!$F2 989
9 TraesCS1A01G240000 chr3B 80295941 80296560 619 True 765.00 765 88.889000 873 1506 1 chr3B.!!$R1 633
10 TraesCS1A01G240000 chr5D 15659829 15660455 626 False 627.00 627 84.968000 3475 4095 1 chr5D.!!$F1 620
11 TraesCS1A01G240000 chr5A 482336713 482337337 624 True 397.00 516 93.924500 5122 5645 2 chr5A.!!$R3 523
12 TraesCS1A01G240000 chr5A 482329187 482329811 624 True 394.00 516 93.651500 5122 5645 2 chr5A.!!$R2 523
13 TraesCS1A01G240000 chr5A 482343893 482344517 624 True 394.00 516 93.651500 5122 5645 2 chr5A.!!$R4 523
14 TraesCS1A01G240000 chr5A 482318828 482322635 3807 True 384.75 521 94.425500 5122 5645 4 chr5A.!!$R1 523
15 TraesCS1A01G240000 chr4A 201577637 201578819 1182 False 219.00 363 88.738000 5245 5635 2 chr4A.!!$F1 390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.101219 GAAATCCATGTCGGCTTGCC 59.899 55.000 0.75 0.75 33.14 4.52 F
216 217 0.179034 GCCGCCATCTCATTCCTTCT 60.179 55.000 0.00 0.00 0.00 2.85 F
308 309 0.319555 GTTGCCGGGCTTTCCTTTTC 60.320 55.000 21.46 0.00 0.00 2.29 F
386 387 0.329261 TTTGGGCTCTGCTATGCTGT 59.671 50.000 0.00 0.00 0.00 4.40 F
387 388 0.393402 TTGGGCTCTGCTATGCTGTG 60.393 55.000 0.00 0.00 0.00 3.66 F
962 1381 1.063942 TGGTCGCTCCTAAGATCCTCA 60.064 52.381 0.00 0.00 37.07 3.86 F
1276 2201 1.134729 GCGACCCGTCCAAGGTAATAA 60.135 52.381 0.00 0.00 37.88 1.40 F
1497 2595 2.483876 TGAGCTGTTGTAGTGTTGAGC 58.516 47.619 0.00 0.00 0.00 4.26 F
3514 5227 2.565834 GGTGGTTAGCAGTGTAGAAGGA 59.434 50.000 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 2978 0.458370 CCGGCAAGCTTAATTGTGGC 60.458 55.000 0.00 0.0 32.56 5.01 R
1959 3057 3.030291 ACACAGGCTTTTGGAATGTCAA 58.970 40.909 0.00 0.0 0.00 3.18 R
2163 3261 4.559502 GCCTGATTCAAGTTGGAGAAAACC 60.560 45.833 2.34 0.0 0.00 3.27 R
2324 3538 5.465532 TGCAAATCCTTACTGAAAATGCA 57.534 34.783 0.00 0.0 38.78 3.96 R
2948 4339 4.973168 TCAAGATGTTTGGCTCAGTAGTT 58.027 39.130 0.00 0.0 0.00 2.24 R
3384 4801 5.345202 CACAACATTCAGTAGTCGGTACTTC 59.655 44.000 0.00 0.0 40.27 3.01 R
3785 5499 1.493871 AGGATCTGATTGGCTTCCCAG 59.506 52.381 0.00 0.0 43.37 4.45 R
4177 5899 9.530633 AACCAGTATCAATCGAAGTTATAGAAC 57.469 33.333 0.00 0.0 35.64 3.01 R
4658 6384 0.037975 GCAAAATGTGGTGGCTGAGG 60.038 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.635769 GGGGTGATGCATGTCGAA 57.364 55.556 2.46 0.00 0.00 3.71
18 19 2.866872 GGGGTGATGCATGTCGAAA 58.133 52.632 2.46 0.00 0.00 3.46
19 20 1.392589 GGGGTGATGCATGTCGAAAT 58.607 50.000 2.46 0.00 0.00 2.17
20 21 1.066002 GGGGTGATGCATGTCGAAATG 59.934 52.381 11.47 11.47 0.00 2.32
27 28 0.947244 GCATGTCGAAATGCCTAGGG 59.053 55.000 27.18 0.00 45.93 3.53
38 39 4.096003 CCTAGGGCGGTGGTGGTG 62.096 72.222 0.00 0.00 0.00 4.17
39 40 4.096003 CTAGGGCGGTGGTGGTGG 62.096 72.222 0.00 0.00 0.00 4.61
40 41 4.966274 TAGGGCGGTGGTGGTGGT 62.966 66.667 0.00 0.00 0.00 4.16
43 44 4.344865 GGCGGTGGTGGTGGTCAT 62.345 66.667 0.00 0.00 0.00 3.06
44 45 3.055719 GCGGTGGTGGTGGTCATG 61.056 66.667 0.00 0.00 0.00 3.07
45 46 2.359850 CGGTGGTGGTGGTCATGG 60.360 66.667 0.00 0.00 0.00 3.66
46 47 2.889606 CGGTGGTGGTGGTCATGGA 61.890 63.158 0.00 0.00 0.00 3.41
47 48 1.303317 GGTGGTGGTGGTCATGGAC 60.303 63.158 0.00 0.00 0.00 4.02
48 49 1.761174 GTGGTGGTGGTCATGGACT 59.239 57.895 0.00 0.00 32.47 3.85
49 50 0.606401 GTGGTGGTGGTCATGGACTG 60.606 60.000 0.00 0.00 32.47 3.51
50 51 1.002134 GGTGGTGGTCATGGACTGG 60.002 63.158 0.00 0.00 32.47 4.00
51 52 1.002134 GTGGTGGTCATGGACTGGG 60.002 63.158 0.00 0.00 32.47 4.45
52 53 1.151921 TGGTGGTCATGGACTGGGA 60.152 57.895 0.00 0.00 32.47 4.37
53 54 1.200760 TGGTGGTCATGGACTGGGAG 61.201 60.000 0.00 0.00 32.47 4.30
54 55 0.909610 GGTGGTCATGGACTGGGAGA 60.910 60.000 0.00 0.00 32.47 3.71
55 56 0.984230 GTGGTCATGGACTGGGAGAA 59.016 55.000 0.00 0.00 32.47 2.87
56 57 1.351017 GTGGTCATGGACTGGGAGAAA 59.649 52.381 0.00 0.00 32.47 2.52
57 58 2.025887 GTGGTCATGGACTGGGAGAAAT 60.026 50.000 0.00 0.00 32.47 2.17
58 59 2.239654 TGGTCATGGACTGGGAGAAATC 59.760 50.000 0.00 0.00 32.47 2.17
59 60 2.422093 GGTCATGGACTGGGAGAAATCC 60.422 54.545 0.00 0.00 32.47 3.01
60 61 2.239654 GTCATGGACTGGGAGAAATCCA 59.760 50.000 0.00 0.00 45.12 3.41
63 64 2.278245 TGGACTGGGAGAAATCCATGT 58.722 47.619 0.00 0.00 36.30 3.21
64 65 2.239654 TGGACTGGGAGAAATCCATGTC 59.760 50.000 9.15 9.15 36.30 3.06
65 66 2.555199 GACTGGGAGAAATCCATGTCG 58.445 52.381 0.00 0.00 33.29 4.35
66 67 1.210478 ACTGGGAGAAATCCATGTCGG 59.790 52.381 0.00 0.00 33.29 4.79
67 68 0.107214 TGGGAGAAATCCATGTCGGC 60.107 55.000 0.00 0.00 33.14 5.54
68 69 0.181350 GGGAGAAATCCATGTCGGCT 59.819 55.000 0.00 0.00 33.14 5.52
69 70 1.408822 GGGAGAAATCCATGTCGGCTT 60.409 52.381 0.00 0.00 33.14 4.35
70 71 1.672881 GGAGAAATCCATGTCGGCTTG 59.327 52.381 0.00 0.00 33.14 4.01
71 72 1.064654 GAGAAATCCATGTCGGCTTGC 59.935 52.381 0.00 0.00 33.14 4.01
72 73 0.101219 GAAATCCATGTCGGCTTGCC 59.899 55.000 0.75 0.75 33.14 4.52
73 74 1.322538 AAATCCATGTCGGCTTGCCC 61.323 55.000 6.02 0.00 33.14 5.36
109 110 4.552365 CCTGTGGGCGCCATCGAT 62.552 66.667 30.85 0.00 35.28 3.59
110 111 2.969238 CTGTGGGCGCCATCGATC 60.969 66.667 30.85 10.31 35.28 3.69
111 112 4.545706 TGTGGGCGCCATCGATCC 62.546 66.667 30.85 9.47 35.28 3.36
114 115 4.688966 GGGCGCCATCGATCCCTC 62.689 72.222 30.85 1.84 35.79 4.30
115 116 4.688966 GGCGCCATCGATCCCTCC 62.689 72.222 24.80 0.00 38.10 4.30
116 117 3.620785 GCGCCATCGATCCCTCCT 61.621 66.667 0.00 0.00 38.10 3.69
117 118 2.341543 CGCCATCGATCCCTCCTG 59.658 66.667 0.00 0.00 38.10 3.86
118 119 2.203082 CGCCATCGATCCCTCCTGA 61.203 63.158 0.00 0.00 38.10 3.86
119 120 1.670590 GCCATCGATCCCTCCTGAG 59.329 63.158 0.00 0.00 0.00 3.35
120 121 0.829602 GCCATCGATCCCTCCTGAGA 60.830 60.000 0.00 0.00 0.00 3.27
121 122 1.255882 CCATCGATCCCTCCTGAGAG 58.744 60.000 0.00 0.00 40.09 3.20
129 130 4.328041 CTCCTGAGAGGCGTCAGA 57.672 61.111 18.23 6.66 46.02 3.27
130 131 2.805897 CTCCTGAGAGGCGTCAGAT 58.194 57.895 18.23 0.00 46.02 2.90
131 132 0.385029 CTCCTGAGAGGCGTCAGATG 59.615 60.000 18.23 8.76 46.02 2.90
132 133 0.323816 TCCTGAGAGGCGTCAGATGT 60.324 55.000 18.23 0.00 46.02 3.06
133 134 1.064685 TCCTGAGAGGCGTCAGATGTA 60.065 52.381 18.23 2.26 46.02 2.29
134 135 1.959985 CCTGAGAGGCGTCAGATGTAT 59.040 52.381 18.23 0.00 46.02 2.29
135 136 2.030363 CCTGAGAGGCGTCAGATGTATC 60.030 54.545 18.23 0.00 46.02 2.24
136 137 1.957177 TGAGAGGCGTCAGATGTATCC 59.043 52.381 9.41 0.00 0.00 2.59
137 138 1.271102 GAGAGGCGTCAGATGTATCCC 59.729 57.143 9.41 0.00 0.00 3.85
138 139 1.133325 AGAGGCGTCAGATGTATCCCT 60.133 52.381 9.41 0.00 0.00 4.20
139 140 1.689273 GAGGCGTCAGATGTATCCCTT 59.311 52.381 0.52 0.00 0.00 3.95
140 141 1.689273 AGGCGTCAGATGTATCCCTTC 59.311 52.381 0.00 0.00 0.00 3.46
141 142 1.270358 GGCGTCAGATGTATCCCTTCC 60.270 57.143 0.00 0.00 0.00 3.46
142 143 1.270358 GCGTCAGATGTATCCCTTCCC 60.270 57.143 0.00 0.00 0.00 3.97
143 144 1.344763 CGTCAGATGTATCCCTTCCCC 59.655 57.143 0.00 0.00 0.00 4.81
144 145 2.408565 GTCAGATGTATCCCTTCCCCA 58.591 52.381 0.00 0.00 0.00 4.96
145 146 2.104963 GTCAGATGTATCCCTTCCCCAC 59.895 54.545 0.00 0.00 0.00 4.61
146 147 1.421646 CAGATGTATCCCTTCCCCACC 59.578 57.143 0.00 0.00 0.00 4.61
147 148 1.010793 AGATGTATCCCTTCCCCACCA 59.989 52.381 0.00 0.00 0.00 4.17
148 149 2.065799 GATGTATCCCTTCCCCACCAT 58.934 52.381 0.00 0.00 0.00 3.55
149 150 1.994399 TGTATCCCTTCCCCACCATT 58.006 50.000 0.00 0.00 0.00 3.16
150 151 1.850345 TGTATCCCTTCCCCACCATTC 59.150 52.381 0.00 0.00 0.00 2.67
151 152 1.145119 GTATCCCTTCCCCACCATTCC 59.855 57.143 0.00 0.00 0.00 3.01
152 153 1.296662 ATCCCTTCCCCACCATTCCC 61.297 60.000 0.00 0.00 0.00 3.97
153 154 2.689813 CCTTCCCCACCATTCCCC 59.310 66.667 0.00 0.00 0.00 4.81
154 155 2.275418 CTTCCCCACCATTCCCCG 59.725 66.667 0.00 0.00 0.00 5.73
155 156 2.533232 TTCCCCACCATTCCCCGT 60.533 61.111 0.00 0.00 0.00 5.28
156 157 2.837031 CTTCCCCACCATTCCCCGTG 62.837 65.000 0.00 0.00 0.00 4.94
157 158 3.657350 CCCCACCATTCCCCGTGT 61.657 66.667 0.00 0.00 0.00 4.49
158 159 2.302509 CCCCACCATTCCCCGTGTA 61.303 63.158 0.00 0.00 0.00 2.90
159 160 1.078001 CCCACCATTCCCCGTGTAC 60.078 63.158 0.00 0.00 0.00 2.90
160 161 1.559065 CCCACCATTCCCCGTGTACT 61.559 60.000 0.00 0.00 0.00 2.73
161 162 0.392461 CCACCATTCCCCGTGTACTG 60.392 60.000 0.00 0.00 0.00 2.74
162 163 0.392461 CACCATTCCCCGTGTACTGG 60.392 60.000 0.00 0.00 0.00 4.00
163 164 1.223487 CCATTCCCCGTGTACTGGG 59.777 63.158 14.80 14.80 46.93 4.45
168 169 3.486001 CCCGTGTACTGGGGGAAA 58.514 61.111 14.13 0.00 44.10 3.13
169 170 1.002990 CCCGTGTACTGGGGGAAAC 60.003 63.158 14.13 0.00 44.10 2.78
185 186 3.072211 GGAAACCCTAGAACTTGTTCGG 58.928 50.000 7.71 6.21 0.00 4.30
186 187 2.853235 AACCCTAGAACTTGTTCGGG 57.147 50.000 18.55 18.55 37.70 5.14
187 188 0.323957 ACCCTAGAACTTGTTCGGGC 59.676 55.000 19.49 0.00 35.05 6.13
188 189 0.323629 CCCTAGAACTTGTTCGGGCA 59.676 55.000 16.70 3.16 0.00 5.36
189 190 1.271163 CCCTAGAACTTGTTCGGGCAA 60.271 52.381 16.70 0.00 0.00 4.52
190 191 1.804748 CCTAGAACTTGTTCGGGCAAC 59.195 52.381 7.71 0.00 35.28 4.17
191 192 2.489971 CTAGAACTTGTTCGGGCAACA 58.510 47.619 7.71 0.00 43.68 3.33
196 197 4.466133 TGTTCGGGCAACAACGAT 57.534 50.000 0.00 0.00 42.35 3.73
197 198 1.945522 TGTTCGGGCAACAACGATG 59.054 52.632 0.00 0.00 42.35 3.84
198 199 1.442017 GTTCGGGCAACAACGATGC 60.442 57.895 0.00 0.00 43.08 3.91
203 204 4.036804 GCAACAACGATGCCGCCA 62.037 61.111 0.00 0.00 39.95 5.69
204 205 2.876955 CAACAACGATGCCGCCAT 59.123 55.556 0.00 0.00 39.95 4.40
205 206 1.226379 CAACAACGATGCCGCCATC 60.226 57.895 0.00 0.00 43.55 3.51
206 207 1.377202 AACAACGATGCCGCCATCT 60.377 52.632 4.71 0.00 44.56 2.90
207 208 1.369091 AACAACGATGCCGCCATCTC 61.369 55.000 4.71 0.00 44.56 2.75
208 209 1.815003 CAACGATGCCGCCATCTCA 60.815 57.895 4.71 0.00 44.56 3.27
209 210 1.146930 AACGATGCCGCCATCTCAT 59.853 52.632 4.71 0.00 44.56 2.90
210 211 0.464373 AACGATGCCGCCATCTCATT 60.464 50.000 4.71 0.00 44.56 2.57
211 212 0.882042 ACGATGCCGCCATCTCATTC 60.882 55.000 4.71 0.00 44.56 2.67
212 213 1.572085 CGATGCCGCCATCTCATTCC 61.572 60.000 4.71 0.00 44.56 3.01
213 214 0.250640 GATGCCGCCATCTCATTCCT 60.251 55.000 0.00 0.00 43.62 3.36
214 215 0.184451 ATGCCGCCATCTCATTCCTT 59.816 50.000 0.00 0.00 0.00 3.36
215 216 0.464373 TGCCGCCATCTCATTCCTTC 60.464 55.000 0.00 0.00 0.00 3.46
216 217 0.179034 GCCGCCATCTCATTCCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
217 218 1.748591 GCCGCCATCTCATTCCTTCTT 60.749 52.381 0.00 0.00 0.00 2.52
218 219 2.485479 GCCGCCATCTCATTCCTTCTTA 60.485 50.000 0.00 0.00 0.00 2.10
219 220 3.397482 CCGCCATCTCATTCCTTCTTAG 58.603 50.000 0.00 0.00 0.00 2.18
220 221 3.070159 CCGCCATCTCATTCCTTCTTAGA 59.930 47.826 0.00 0.00 0.00 2.10
221 222 4.305769 CGCCATCTCATTCCTTCTTAGAG 58.694 47.826 0.00 0.00 0.00 2.43
222 223 4.640364 GCCATCTCATTCCTTCTTAGAGG 58.360 47.826 0.00 0.00 38.20 3.69
223 224 4.102367 GCCATCTCATTCCTTCTTAGAGGT 59.898 45.833 0.00 0.00 38.04 3.85
224 225 5.609423 CCATCTCATTCCTTCTTAGAGGTG 58.391 45.833 0.00 0.00 37.23 4.00
225 226 5.130145 CCATCTCATTCCTTCTTAGAGGTGT 59.870 44.000 0.00 0.00 36.07 4.16
226 227 6.352565 CCATCTCATTCCTTCTTAGAGGTGTT 60.353 42.308 0.00 0.00 36.07 3.32
227 228 6.042638 TCTCATTCCTTCTTAGAGGTGTTG 57.957 41.667 0.00 0.00 38.04 3.33
228 229 4.579869 TCATTCCTTCTTAGAGGTGTTGC 58.420 43.478 0.00 0.00 38.04 4.17
229 230 4.287067 TCATTCCTTCTTAGAGGTGTTGCT 59.713 41.667 0.00 0.00 38.04 3.91
230 231 4.706842 TTCCTTCTTAGAGGTGTTGCTT 57.293 40.909 0.00 0.00 38.04 3.91
231 232 4.008074 TCCTTCTTAGAGGTGTTGCTTG 57.992 45.455 0.00 0.00 38.04 4.01
232 233 3.077359 CCTTCTTAGAGGTGTTGCTTGG 58.923 50.000 0.00 0.00 31.89 3.61
233 234 3.496870 CCTTCTTAGAGGTGTTGCTTGGT 60.497 47.826 0.00 0.00 31.89 3.67
234 235 3.126001 TCTTAGAGGTGTTGCTTGGTG 57.874 47.619 0.00 0.00 0.00 4.17
235 236 1.537202 CTTAGAGGTGTTGCTTGGTGC 59.463 52.381 0.00 0.00 43.25 5.01
250 251 4.015406 TGCACGGCACTTCGGGAT 62.015 61.111 0.00 0.00 35.20 3.85
251 252 3.499737 GCACGGCACTTCGGGATG 61.500 66.667 0.00 0.00 35.20 3.51
252 253 3.499737 CACGGCACTTCGGGATGC 61.500 66.667 0.00 0.00 41.29 3.91
253 254 3.706373 ACGGCACTTCGGGATGCT 61.706 61.111 5.82 0.00 41.74 3.79
254 255 3.197790 CGGCACTTCGGGATGCTG 61.198 66.667 5.82 3.50 41.74 4.41
255 256 2.825836 GGCACTTCGGGATGCTGG 60.826 66.667 0.00 0.00 41.74 4.85
256 257 2.825836 GCACTTCGGGATGCTGGG 60.826 66.667 0.00 0.00 38.84 4.45
257 258 2.989639 CACTTCGGGATGCTGGGA 59.010 61.111 0.00 0.00 0.00 4.37
258 259 1.153289 CACTTCGGGATGCTGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
259 260 2.203126 CTTCGGGATGCTGGGAGC 60.203 66.667 0.00 0.00 42.82 4.70
268 269 2.998097 GCTGGGAGCATGGTGGTA 59.002 61.111 0.00 0.00 41.89 3.25
269 270 1.452108 GCTGGGAGCATGGTGGTAC 60.452 63.158 0.00 0.00 41.89 3.34
270 271 1.915078 GCTGGGAGCATGGTGGTACT 61.915 60.000 0.00 0.00 41.89 2.73
271 272 0.620556 CTGGGAGCATGGTGGTACTT 59.379 55.000 0.00 0.00 0.00 2.24
272 273 0.618458 TGGGAGCATGGTGGTACTTC 59.382 55.000 0.00 0.00 0.00 3.01
273 274 0.912486 GGGAGCATGGTGGTACTTCT 59.088 55.000 0.00 0.00 0.00 2.85
274 275 1.282157 GGGAGCATGGTGGTACTTCTT 59.718 52.381 0.00 0.00 0.00 2.52
275 276 2.633488 GGAGCATGGTGGTACTTCTTC 58.367 52.381 0.00 0.00 0.00 2.87
276 277 2.271800 GAGCATGGTGGTACTTCTTCG 58.728 52.381 0.00 0.00 0.00 3.79
277 278 1.066143 AGCATGGTGGTACTTCTTCGG 60.066 52.381 0.00 0.00 0.00 4.30
278 279 1.066430 GCATGGTGGTACTTCTTCGGA 60.066 52.381 0.00 0.00 0.00 4.55
279 280 2.614481 GCATGGTGGTACTTCTTCGGAA 60.614 50.000 0.00 0.00 0.00 4.30
287 288 2.166270 CTTCTTCGGAAGGTGCAGC 58.834 57.895 17.19 8.11 45.52 5.25
288 289 1.630244 CTTCTTCGGAAGGTGCAGCG 61.630 60.000 17.19 0.00 45.52 5.18
289 290 3.121030 CTTCGGAAGGTGCAGCGG 61.121 66.667 10.78 1.66 0.00 5.52
290 291 3.883744 CTTCGGAAGGTGCAGCGGT 62.884 63.158 10.78 2.10 0.00 5.68
291 292 3.469863 TTCGGAAGGTGCAGCGGTT 62.470 57.895 10.78 0.00 0.00 4.44
292 293 3.726517 CGGAAGGTGCAGCGGTTG 61.727 66.667 10.78 0.00 0.00 3.77
305 306 2.600470 GGTTGCCGGGCTTTCCTT 60.600 61.111 21.46 0.00 0.00 3.36
306 307 2.207229 GGTTGCCGGGCTTTCCTTT 61.207 57.895 21.46 0.00 0.00 3.11
307 308 1.745890 GTTGCCGGGCTTTCCTTTT 59.254 52.632 21.46 0.00 0.00 2.27
308 309 0.319555 GTTGCCGGGCTTTCCTTTTC 60.320 55.000 21.46 0.00 0.00 2.29
309 310 0.469144 TTGCCGGGCTTTCCTTTTCT 60.469 50.000 21.46 0.00 0.00 2.52
310 311 0.893727 TGCCGGGCTTTCCTTTTCTC 60.894 55.000 21.46 0.00 0.00 2.87
311 312 1.595993 GCCGGGCTTTCCTTTTCTCC 61.596 60.000 12.87 0.00 0.00 3.71
312 313 1.305930 CCGGGCTTTCCTTTTCTCCG 61.306 60.000 0.00 0.00 36.23 4.63
313 314 0.605589 CGGGCTTTCCTTTTCTCCGT 60.606 55.000 0.00 0.00 0.00 4.69
314 315 1.617322 GGGCTTTCCTTTTCTCCGTT 58.383 50.000 0.00 0.00 0.00 4.44
315 316 1.269723 GGGCTTTCCTTTTCTCCGTTG 59.730 52.381 0.00 0.00 0.00 4.10
316 317 2.227194 GGCTTTCCTTTTCTCCGTTGA 58.773 47.619 0.00 0.00 0.00 3.18
317 318 2.820197 GGCTTTCCTTTTCTCCGTTGAT 59.180 45.455 0.00 0.00 0.00 2.57
318 319 4.007659 GGCTTTCCTTTTCTCCGTTGATA 58.992 43.478 0.00 0.00 0.00 2.15
319 320 4.640647 GGCTTTCCTTTTCTCCGTTGATAT 59.359 41.667 0.00 0.00 0.00 1.63
320 321 5.449177 GGCTTTCCTTTTCTCCGTTGATATG 60.449 44.000 0.00 0.00 0.00 1.78
321 322 5.560966 TTTCCTTTTCTCCGTTGATATGC 57.439 39.130 0.00 0.00 0.00 3.14
322 323 3.541632 TCCTTTTCTCCGTTGATATGCC 58.458 45.455 0.00 0.00 0.00 4.40
323 324 2.287915 CCTTTTCTCCGTTGATATGCCG 59.712 50.000 0.00 0.00 0.00 5.69
324 325 2.971660 TTTCTCCGTTGATATGCCGA 57.028 45.000 0.00 0.00 0.00 5.54
325 326 3.469008 TTTCTCCGTTGATATGCCGAT 57.531 42.857 0.00 0.00 0.00 4.18
326 327 2.438868 TCTCCGTTGATATGCCGATG 57.561 50.000 0.00 0.00 0.00 3.84
327 328 1.686587 TCTCCGTTGATATGCCGATGT 59.313 47.619 0.00 0.00 0.00 3.06
328 329 2.061773 CTCCGTTGATATGCCGATGTC 58.938 52.381 0.00 0.00 0.00 3.06
329 330 0.784178 CCGTTGATATGCCGATGTCG 59.216 55.000 0.00 0.00 39.44 4.35
344 345 5.409643 CGATGTCGGCATTTATTTCTCTT 57.590 39.130 2.92 0.00 35.07 2.85
345 346 5.435557 CGATGTCGGCATTTATTTCTCTTC 58.564 41.667 2.92 0.00 35.07 2.87
346 347 5.235186 CGATGTCGGCATTTATTTCTCTTCT 59.765 40.000 2.92 0.00 35.07 2.85
347 348 6.238211 CGATGTCGGCATTTATTTCTCTTCTT 60.238 38.462 2.92 0.00 35.07 2.52
348 349 6.817765 TGTCGGCATTTATTTCTCTTCTTT 57.182 33.333 0.00 0.00 0.00 2.52
349 350 7.214467 TGTCGGCATTTATTTCTCTTCTTTT 57.786 32.000 0.00 0.00 0.00 2.27
350 351 7.657336 TGTCGGCATTTATTTCTCTTCTTTTT 58.343 30.769 0.00 0.00 0.00 1.94
382 383 4.789012 TTTTCTTTTGGGCTCTGCTATG 57.211 40.909 0.00 0.00 0.00 2.23
383 384 1.755179 TCTTTTGGGCTCTGCTATGC 58.245 50.000 0.00 0.00 0.00 3.14
384 385 1.283029 TCTTTTGGGCTCTGCTATGCT 59.717 47.619 0.00 0.00 0.00 3.79
385 386 1.404391 CTTTTGGGCTCTGCTATGCTG 59.596 52.381 0.00 0.00 0.00 4.41
386 387 0.329261 TTTGGGCTCTGCTATGCTGT 59.671 50.000 0.00 0.00 0.00 4.40
387 388 0.393402 TTGGGCTCTGCTATGCTGTG 60.393 55.000 0.00 0.00 0.00 3.66
388 389 1.525535 GGGCTCTGCTATGCTGTGG 60.526 63.158 0.00 0.00 0.00 4.17
389 390 2.185494 GGCTCTGCTATGCTGTGGC 61.185 63.158 8.60 8.60 38.66 5.01
390 391 2.185494 GCTCTGCTATGCTGTGGCC 61.185 63.158 0.00 0.00 37.74 5.36
391 392 1.525535 CTCTGCTATGCTGTGGCCC 60.526 63.158 0.00 0.00 37.74 5.80
392 393 2.517875 CTGCTATGCTGTGGCCCC 60.518 66.667 0.00 0.00 37.74 5.80
393 394 3.337409 TGCTATGCTGTGGCCCCA 61.337 61.111 0.00 0.00 37.74 4.96
394 395 2.517875 GCTATGCTGTGGCCCCAG 60.518 66.667 11.40 11.40 37.74 4.45
400 401 2.203538 CTGTGGCCCCAGCAAACT 60.204 61.111 1.00 0.00 42.56 2.66
401 402 2.521465 TGTGGCCCCAGCAAACTG 60.521 61.111 0.00 0.00 44.05 3.16
412 413 2.632377 CAGCAAACTGGATGTATCGGT 58.368 47.619 0.00 0.00 40.48 4.69
413 414 3.009723 CAGCAAACTGGATGTATCGGTT 58.990 45.455 0.00 0.00 40.48 4.44
414 415 3.009723 AGCAAACTGGATGTATCGGTTG 58.990 45.455 0.00 0.00 0.00 3.77
415 416 2.747446 GCAAACTGGATGTATCGGTTGT 59.253 45.455 0.00 0.00 0.00 3.32
416 417 3.181510 GCAAACTGGATGTATCGGTTGTC 60.182 47.826 0.00 0.00 0.00 3.18
417 418 4.253685 CAAACTGGATGTATCGGTTGTCT 58.746 43.478 0.00 0.00 0.00 3.41
418 419 3.526931 ACTGGATGTATCGGTTGTCTG 57.473 47.619 0.00 0.00 0.00 3.51
419 420 2.832129 ACTGGATGTATCGGTTGTCTGT 59.168 45.455 0.00 0.00 0.00 3.41
420 421 3.260884 ACTGGATGTATCGGTTGTCTGTT 59.739 43.478 0.00 0.00 0.00 3.16
421 422 4.253685 CTGGATGTATCGGTTGTCTGTTT 58.746 43.478 0.00 0.00 0.00 2.83
422 423 4.647611 TGGATGTATCGGTTGTCTGTTTT 58.352 39.130 0.00 0.00 0.00 2.43
423 424 5.795972 TGGATGTATCGGTTGTCTGTTTTA 58.204 37.500 0.00 0.00 0.00 1.52
424 425 6.411376 TGGATGTATCGGTTGTCTGTTTTAT 58.589 36.000 0.00 0.00 0.00 1.40
425 426 7.557724 TGGATGTATCGGTTGTCTGTTTTATA 58.442 34.615 0.00 0.00 0.00 0.98
426 427 8.208224 TGGATGTATCGGTTGTCTGTTTTATAT 58.792 33.333 0.00 0.00 0.00 0.86
427 428 9.701098 GGATGTATCGGTTGTCTGTTTTATATA 57.299 33.333 0.00 0.00 0.00 0.86
434 435 8.757789 TCGGTTGTCTGTTTTATATATAAAGCG 58.242 33.333 20.48 16.12 36.59 4.68
435 436 8.007716 CGGTTGTCTGTTTTATATATAAAGCGG 58.992 37.037 24.39 24.39 39.62 5.52
436 437 8.287503 GGTTGTCTGTTTTATATATAAAGCGGG 58.712 37.037 27.27 20.23 39.11 6.13
437 438 7.972832 TGTCTGTTTTATATATAAAGCGGGG 57.027 36.000 27.27 18.59 39.11 5.73
438 439 6.938030 TGTCTGTTTTATATATAAAGCGGGGG 59.062 38.462 27.27 16.97 39.11 5.40
460 461 4.999311 GGGAACTCTTTATTGTACAACGGT 59.001 41.667 11.22 0.00 0.00 4.83
476 477 6.144078 ACAACGGTTCTAGCAGAAATTTTT 57.856 33.333 0.00 0.00 35.75 1.94
516 518 4.268644 TGAATCGATCTCGTTCAAGCATTC 59.731 41.667 0.00 7.58 36.89 2.67
567 569 7.572759 CACAAGTTAGAGCGTTATTCTTTTGA 58.427 34.615 0.00 0.00 0.00 2.69
602 604 3.782656 TTTTCTGGGTTGGTAGTCCTC 57.217 47.619 0.00 0.00 34.23 3.71
633 635 8.191446 TGTTATTTTGGATGAAGTTTTGAACGA 58.809 29.630 0.00 0.00 36.23 3.85
635 637 7.642071 ATTTTGGATGAAGTTTTGAACGATG 57.358 32.000 0.00 0.00 36.23 3.84
636 638 4.159377 TGGATGAAGTTTTGAACGATGC 57.841 40.909 0.00 0.00 36.23 3.91
652 654 7.144661 TGAACGATGCAAGTTTATTCACAAAT 58.855 30.769 11.44 0.00 31.14 2.32
691 693 3.570926 GGCTTTCCCCGTAAAAAGAAG 57.429 47.619 5.21 0.00 35.02 2.85
692 694 3.151554 GGCTTTCCCCGTAAAAAGAAGA 58.848 45.455 5.21 0.00 35.02 2.87
695 697 5.279306 GGCTTTCCCCGTAAAAAGAAGATTT 60.279 40.000 5.21 0.00 35.02 2.17
696 698 6.220930 GCTTTCCCCGTAAAAAGAAGATTTT 58.779 36.000 5.21 0.00 35.02 1.82
697 699 6.365247 GCTTTCCCCGTAAAAAGAAGATTTTC 59.635 38.462 5.21 0.00 35.02 2.29
698 700 5.970317 TCCCCGTAAAAAGAAGATTTTCC 57.030 39.130 0.00 0.00 34.51 3.13
699 701 5.637127 TCCCCGTAAAAAGAAGATTTTCCT 58.363 37.500 0.00 0.00 34.51 3.36
700 702 5.475564 TCCCCGTAAAAAGAAGATTTTCCTG 59.524 40.000 0.00 0.00 34.51 3.86
701 703 5.161358 CCCGTAAAAAGAAGATTTTCCTGC 58.839 41.667 0.00 0.00 34.51 4.85
702 704 5.278758 CCCGTAAAAAGAAGATTTTCCTGCA 60.279 40.000 0.00 0.00 34.51 4.41
703 705 5.629435 CCGTAAAAAGAAGATTTTCCTGCAC 59.371 40.000 0.00 0.00 34.51 4.57
704 706 6.438763 CGTAAAAAGAAGATTTTCCTGCACT 58.561 36.000 0.00 0.00 34.51 4.40
705 707 6.918022 CGTAAAAAGAAGATTTTCCTGCACTT 59.082 34.615 0.00 0.00 34.51 3.16
706 708 7.435192 CGTAAAAAGAAGATTTTCCTGCACTTT 59.565 33.333 0.00 0.00 34.51 2.66
707 709 7.543947 AAAAAGAAGATTTTCCTGCACTTTG 57.456 32.000 0.00 0.00 33.64 2.77
708 710 4.861102 AGAAGATTTTCCTGCACTTTGG 57.139 40.909 0.00 0.00 33.64 3.28
709 711 4.218312 AGAAGATTTTCCTGCACTTTGGT 58.782 39.130 0.00 0.00 33.64 3.67
710 712 4.279420 AGAAGATTTTCCTGCACTTTGGTC 59.721 41.667 0.00 0.00 33.64 4.02
775 778 6.399639 AATTGTTAAGTTTTCGTGGTGGAT 57.600 33.333 0.00 0.00 0.00 3.41
776 779 7.513371 AATTGTTAAGTTTTCGTGGTGGATA 57.487 32.000 0.00 0.00 0.00 2.59
777 780 7.696992 ATTGTTAAGTTTTCGTGGTGGATAT 57.303 32.000 0.00 0.00 0.00 1.63
782 1168 6.642707 AAGTTTTCGTGGTGGATATTTTCA 57.357 33.333 0.00 0.00 0.00 2.69
783 1169 6.834168 AGTTTTCGTGGTGGATATTTTCAT 57.166 33.333 0.00 0.00 0.00 2.57
786 1172 5.574891 TTCGTGGTGGATATTTTCATTGG 57.425 39.130 0.00 0.00 0.00 3.16
795 1181 6.488683 GTGGATATTTTCATTGGATCGGGTTA 59.511 38.462 0.00 0.00 0.00 2.85
810 1196 5.640158 TCGGGTTAGGTGGATATTTTCAT 57.360 39.130 0.00 0.00 0.00 2.57
811 1197 6.008696 TCGGGTTAGGTGGATATTTTCATT 57.991 37.500 0.00 0.00 0.00 2.57
812 1198 6.428295 TCGGGTTAGGTGGATATTTTCATTT 58.572 36.000 0.00 0.00 0.00 2.32
813 1199 6.544564 TCGGGTTAGGTGGATATTTTCATTTC 59.455 38.462 0.00 0.00 0.00 2.17
814 1200 6.320164 CGGGTTAGGTGGATATTTTCATTTCA 59.680 38.462 0.00 0.00 0.00 2.69
815 1201 7.147983 CGGGTTAGGTGGATATTTTCATTTCAA 60.148 37.037 0.00 0.00 0.00 2.69
818 1204 6.796785 AGGTGGATATTTTCATTTCAAGGG 57.203 37.500 0.00 0.00 0.00 3.95
849 1235 2.345341 GTGGCAATTTCGCATAAACAGC 59.655 45.455 0.00 0.00 0.00 4.40
852 1238 2.539476 CAATTTCGCATAAACAGCCCC 58.461 47.619 0.00 0.00 0.00 5.80
853 1239 2.143876 ATTTCGCATAAACAGCCCCT 57.856 45.000 0.00 0.00 0.00 4.79
855 1241 2.325583 TTCGCATAAACAGCCCCTAG 57.674 50.000 0.00 0.00 0.00 3.02
858 1244 2.101917 TCGCATAAACAGCCCCTAGTAC 59.898 50.000 0.00 0.00 0.00 2.73
904 1321 1.878656 CTCCAGGTTCGCCTCGTTCT 61.879 60.000 0.00 0.00 46.86 3.01
905 1322 1.738099 CCAGGTTCGCCTCGTTCTG 60.738 63.158 0.00 0.00 46.86 3.02
962 1381 1.063942 TGGTCGCTCCTAAGATCCTCA 60.064 52.381 0.00 0.00 37.07 3.86
1074 1494 2.360600 CCGATTTCCGTTGCCCCA 60.361 61.111 0.00 0.00 36.31 4.96
1276 2201 1.134729 GCGACCCGTCCAAGGTAATAA 60.135 52.381 0.00 0.00 37.88 1.40
1306 2237 2.900106 GCTCCTGCACTTCCCACCT 61.900 63.158 0.00 0.00 39.41 4.00
1396 2327 5.912149 TGCTGAATTATATTCTGGGGACT 57.088 39.130 7.94 0.00 0.00 3.85
1407 2338 3.164977 GGGGACTCCTGGGCTAGC 61.165 72.222 6.04 6.04 0.00 3.42
1497 2595 2.483876 TGAGCTGTTGTAGTGTTGAGC 58.516 47.619 0.00 0.00 0.00 4.26
1511 2609 3.944015 GTGTTGAGCTCATGCCTATTTCT 59.056 43.478 19.04 0.00 40.80 2.52
1512 2610 4.397417 GTGTTGAGCTCATGCCTATTTCTT 59.603 41.667 19.04 0.00 40.80 2.52
1513 2611 4.637534 TGTTGAGCTCATGCCTATTTCTTC 59.362 41.667 19.04 0.00 40.80 2.87
1545 2643 5.448632 CGCCACTTATTATGTTTCTTGGACC 60.449 44.000 0.00 0.00 0.00 4.46
1624 2722 3.047877 GGGGTGACGTTCTTGGCG 61.048 66.667 0.00 0.00 0.00 5.69
1678 2776 2.941453 TCGAGGTCTGTGCTTCATAC 57.059 50.000 0.00 0.00 0.00 2.39
1707 2805 7.556733 ACACACTTTTGTCTTTAATTCGGTA 57.443 32.000 0.00 0.00 31.66 4.02
1766 2864 6.717084 AGTTGCCTAAGAAAAAGCTACTCAAT 59.283 34.615 0.00 0.00 36.78 2.57
1768 2866 6.476378 TGCCTAAGAAAAAGCTACTCAATCT 58.524 36.000 0.00 0.00 0.00 2.40
1880 2978 3.880047 ATGTGGCATCCAAAATCACAG 57.120 42.857 0.00 0.00 40.89 3.66
1990 3088 7.113658 TCCAAAAGCCTGTGTAAATGTAAAA 57.886 32.000 0.00 0.00 0.00 1.52
2047 3145 5.195001 TGGTATCTGTTTTGCAAGGAAAC 57.805 39.130 0.00 2.14 37.48 2.78
2324 3538 7.633789 ACATTAAGTACTCTGGGATGTTGAAT 58.366 34.615 0.00 0.00 0.00 2.57
2359 3574 4.265073 AGGATTTGCAGGTTGTAGCTAAG 58.735 43.478 0.00 0.00 0.00 2.18
2478 3693 7.486232 GCCTGATTGTCTACAAATTTTAGCTTC 59.514 37.037 0.00 0.00 39.55 3.86
2652 4011 5.478679 CCCCTGTCACATTATAGAGAGGTAG 59.521 48.000 0.00 0.00 42.17 3.18
2948 4339 3.010027 TGATGGACAATGGCTTTCCACTA 59.990 43.478 0.00 0.00 46.92 2.74
3384 4801 9.813446 AACTAAAACTGGACTTTAGTATATCGG 57.187 33.333 8.06 0.00 44.81 4.18
3514 5227 2.565834 GGTGGTTAGCAGTGTAGAAGGA 59.434 50.000 0.00 0.00 0.00 3.36
3579 5292 3.131046 CCTCACTTTGTTGTCTTTTGGCT 59.869 43.478 0.00 0.00 0.00 4.75
3606 5319 6.473455 CCATGACTCTGAAATAAATTTTCCGC 59.527 38.462 0.00 0.00 0.00 5.54
3629 5343 5.858581 GCTGTTGACATCTTTATTGGTTGAC 59.141 40.000 0.00 0.00 0.00 3.18
3785 5499 2.629051 CCTTGTGTCCGATTTAGACCC 58.371 52.381 0.00 0.00 33.09 4.46
4168 5890 5.675684 TGATCAGGTCAGTACATTGCTTA 57.324 39.130 0.00 0.00 31.80 3.09
4177 5899 4.759693 TCAGTACATTGCTTACCACCAAAG 59.240 41.667 0.00 0.00 0.00 2.77
4355 6079 7.655236 TTCTACACTCGAGCACTCTATATAC 57.345 40.000 13.61 0.00 0.00 1.47
4356 6080 4.994220 ACACTCGAGCACTCTATATACG 57.006 45.455 13.61 0.00 0.00 3.06
4357 6081 4.378774 ACACTCGAGCACTCTATATACGT 58.621 43.478 13.61 0.00 0.00 3.57
4358 6082 4.815308 ACACTCGAGCACTCTATATACGTT 59.185 41.667 13.61 0.00 0.00 3.99
4467 6193 3.702045 CCCTCTCTGGAAATCTACGTCTT 59.298 47.826 0.00 0.00 38.35 3.01
4712 6443 1.609783 GTGCCATAGCCCAGAACCT 59.390 57.895 0.00 0.00 38.69 3.50
4723 6454 0.179045 CCAGAACCTTGGGGCTATCG 60.179 60.000 0.00 0.00 34.46 2.92
4733 6464 4.322801 CCTTGGGGCTATCGAAGGTATTAG 60.323 50.000 0.00 0.00 37.69 1.73
4783 6514 3.872696 AGGTCAACATTCGACATGCATA 58.127 40.909 0.00 0.00 34.97 3.14
4822 6553 0.915227 GACGGCGAAGATTTCTCGTC 59.085 55.000 16.62 13.99 42.15 4.20
4841 6573 1.414181 TCTGTAGATGCTTAGCAGCCC 59.586 52.381 19.25 10.57 46.90 5.19
4903 6635 6.019479 GGCTAGAACAATCAGTTAATCTGTCG 60.019 42.308 0.00 0.00 41.51 4.35
4924 6656 5.227391 GTCGATGTTCAGTCATGTAACTACG 59.773 44.000 0.00 4.89 0.00 3.51
4926 6658 4.182693 TGTTCAGTCATGTAACTACGGG 57.817 45.455 0.00 0.00 0.00 5.28
4935 6667 4.463539 TCATGTAACTACGGGCAGTTAGAA 59.536 41.667 0.00 1.27 40.70 2.10
4938 6670 5.797051 TGTAACTACGGGCAGTTAGAAAAT 58.203 37.500 0.00 0.00 40.70 1.82
4951 6683 5.983118 CAGTTAGAAAATGGGTGGTGTTTTC 59.017 40.000 0.00 0.00 40.41 2.29
4954 6686 5.692115 AGAAAATGGGTGGTGTTTTCTTT 57.308 34.783 6.52 0.00 45.07 2.52
4955 6687 6.061022 AGAAAATGGGTGGTGTTTTCTTTT 57.939 33.333 6.52 0.00 45.07 2.27
4956 6688 6.112734 AGAAAATGGGTGGTGTTTTCTTTTC 58.887 36.000 6.52 0.00 45.07 2.29
4957 6689 5.692115 AAATGGGTGGTGTTTTCTTTTCT 57.308 34.783 0.00 0.00 0.00 2.52
5024 6756 4.730966 TGTACAAAAGGATTAGGGTTGCA 58.269 39.130 0.00 0.00 0.00 4.08
5068 6800 7.905604 ATGAAAGATAGACATTGTTGTTCGA 57.094 32.000 0.00 0.00 35.79 3.71
5069 6801 7.722795 TGAAAGATAGACATTGTTGTTCGAA 57.277 32.000 0.00 0.00 35.79 3.71
5070 6802 8.148807 TGAAAGATAGACATTGTTGTTCGAAA 57.851 30.769 0.00 0.00 35.79 3.46
5071 6803 8.616942 TGAAAGATAGACATTGTTGTTCGAAAA 58.383 29.630 0.00 0.00 35.79 2.29
5072 6804 9.612620 GAAAGATAGACATTGTTGTTCGAAAAT 57.387 29.630 0.00 0.00 35.79 1.82
5073 6805 9.612620 AAAGATAGACATTGTTGTTCGAAAATC 57.387 29.630 0.00 0.00 35.79 2.17
5074 6806 8.322906 AGATAGACATTGTTGTTCGAAAATCA 57.677 30.769 0.00 0.00 35.79 2.57
5075 6807 8.446273 AGATAGACATTGTTGTTCGAAAATCAG 58.554 33.333 0.00 0.00 35.79 2.90
5076 6808 6.377327 AGACATTGTTGTTCGAAAATCAGT 57.623 33.333 0.00 0.00 35.79 3.41
5077 6809 6.795399 AGACATTGTTGTTCGAAAATCAGTT 58.205 32.000 0.00 0.00 35.79 3.16
5078 6810 7.257722 AGACATTGTTGTTCGAAAATCAGTTT 58.742 30.769 0.00 0.00 35.79 2.66
5079 6811 7.432252 AGACATTGTTGTTCGAAAATCAGTTTC 59.568 33.333 0.00 0.00 38.28 2.78
5080 6812 7.257722 ACATTGTTGTTCGAAAATCAGTTTCT 58.742 30.769 0.00 0.00 37.12 2.52
5081 6813 7.220683 ACATTGTTGTTCGAAAATCAGTTTCTG 59.779 33.333 0.00 0.00 37.12 3.02
5082 6814 6.429791 TGTTGTTCGAAAATCAGTTTCTGA 57.570 33.333 0.00 1.92 44.99 3.27
5083 6815 6.486248 TGTTGTTCGAAAATCAGTTTCTGAG 58.514 36.000 0.00 0.00 44.08 3.35
5084 6816 5.095691 TGTTCGAAAATCAGTTTCTGAGC 57.904 39.130 0.00 0.00 44.08 4.26
5085 6817 4.024048 TGTTCGAAAATCAGTTTCTGAGCC 60.024 41.667 0.00 0.00 44.08 4.70
5086 6818 3.074412 TCGAAAATCAGTTTCTGAGCCC 58.926 45.455 5.71 0.00 44.08 5.19
5087 6819 2.159653 CGAAAATCAGTTTCTGAGCCCG 60.160 50.000 5.71 3.45 44.08 6.13
5088 6820 2.859165 AAATCAGTTTCTGAGCCCGA 57.141 45.000 5.71 0.00 44.08 5.14
5089 6821 2.393271 AATCAGTTTCTGAGCCCGAG 57.607 50.000 5.71 0.00 44.08 4.63
5090 6822 0.107945 ATCAGTTTCTGAGCCCGAGC 60.108 55.000 5.71 0.00 44.08 5.03
5100 6832 4.040068 GCCCGAGCTCACATGATC 57.960 61.111 15.40 0.00 35.50 2.92
5101 6833 1.596477 GCCCGAGCTCACATGATCC 60.596 63.158 15.40 0.00 35.50 3.36
5102 6834 2.037620 GCCCGAGCTCACATGATCCT 62.038 60.000 15.40 0.00 35.50 3.24
5103 6835 0.249784 CCCGAGCTCACATGATCCTG 60.250 60.000 15.40 0.00 0.00 3.86
5104 6836 0.749049 CCGAGCTCACATGATCCTGA 59.251 55.000 15.40 0.00 0.00 3.86
5105 6837 1.137675 CCGAGCTCACATGATCCTGAA 59.862 52.381 15.40 0.00 0.00 3.02
5106 6838 2.419159 CCGAGCTCACATGATCCTGAAA 60.419 50.000 15.40 0.00 0.00 2.69
5107 6839 3.464907 CGAGCTCACATGATCCTGAAAT 58.535 45.455 15.40 0.00 0.00 2.17
5108 6840 3.493877 CGAGCTCACATGATCCTGAAATC 59.506 47.826 15.40 0.00 0.00 2.17
5109 6841 4.706035 GAGCTCACATGATCCTGAAATCT 58.294 43.478 9.40 0.00 0.00 2.40
5110 6842 5.508657 CGAGCTCACATGATCCTGAAATCTA 60.509 44.000 15.40 0.00 0.00 1.98
5111 6843 5.609423 AGCTCACATGATCCTGAAATCTAC 58.391 41.667 0.00 0.00 0.00 2.59
5112 6844 5.129980 AGCTCACATGATCCTGAAATCTACA 59.870 40.000 0.00 0.00 0.00 2.74
5113 6845 5.236047 GCTCACATGATCCTGAAATCTACAC 59.764 44.000 0.00 0.00 0.00 2.90
5114 6846 5.674525 TCACATGATCCTGAAATCTACACC 58.325 41.667 0.00 0.00 0.00 4.16
5115 6847 5.189539 TCACATGATCCTGAAATCTACACCA 59.810 40.000 0.00 0.00 0.00 4.17
5116 6848 5.295292 CACATGATCCTGAAATCTACACCAC 59.705 44.000 0.00 0.00 0.00 4.16
5117 6849 4.487714 TGATCCTGAAATCTACACCACC 57.512 45.455 0.00 0.00 0.00 4.61
5118 6850 3.118775 TGATCCTGAAATCTACACCACCG 60.119 47.826 0.00 0.00 0.00 4.94
5119 6851 2.531771 TCCTGAAATCTACACCACCGA 58.468 47.619 0.00 0.00 0.00 4.69
5120 6852 3.104512 TCCTGAAATCTACACCACCGAT 58.895 45.455 0.00 0.00 0.00 4.18
5233 6965 1.141881 CAGTAGCGAGGCGGAACAT 59.858 57.895 0.00 0.00 0.00 2.71
5252 6984 1.153025 GCAGCAGGCTGATGGATCA 60.153 57.895 31.40 0.00 46.30 2.92
5329 7852 3.294214 CATTGCTCTAGCCCTCCAAATT 58.706 45.455 0.00 0.00 41.18 1.82
5330 7853 2.717639 TGCTCTAGCCCTCCAAATTC 57.282 50.000 0.00 0.00 41.18 2.17
5401 7925 3.572584 GCAATCACCTCTTGCTGAAAAG 58.427 45.455 0.99 0.00 44.36 2.27
5572 8099 1.080230 CTGTGACGTGCCTCTCCAG 60.080 63.158 0.00 0.00 0.00 3.86
5587 8114 0.687354 TCCAGACTGAGGAACAAGCC 59.313 55.000 3.32 0.00 30.71 4.35
5614 8141 2.559998 AAGCTCACAAAAACACACCG 57.440 45.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.480224 CATTTCGACATGCATCACCC 57.520 50.000 0.00 0.00 0.00 4.61
21 22 4.096003 CACCACCACCGCCCTAGG 62.096 72.222 0.06 0.06 37.30 3.02
22 23 4.096003 CCACCACCACCGCCCTAG 62.096 72.222 0.00 0.00 0.00 3.02
23 24 4.966274 ACCACCACCACCGCCCTA 62.966 66.667 0.00 0.00 0.00 3.53
26 27 4.344865 ATGACCACCACCACCGCC 62.345 66.667 0.00 0.00 0.00 6.13
27 28 3.055719 CATGACCACCACCACCGC 61.056 66.667 0.00 0.00 0.00 5.68
28 29 2.359850 CCATGACCACCACCACCG 60.360 66.667 0.00 0.00 0.00 4.94
29 30 1.303317 GTCCATGACCACCACCACC 60.303 63.158 0.00 0.00 0.00 4.61
30 31 0.606401 CAGTCCATGACCACCACCAC 60.606 60.000 0.00 0.00 32.18 4.16
31 32 1.760527 CAGTCCATGACCACCACCA 59.239 57.895 0.00 0.00 32.18 4.17
32 33 1.002134 CCAGTCCATGACCACCACC 60.002 63.158 0.00 0.00 32.18 4.61
33 34 1.002134 CCCAGTCCATGACCACCAC 60.002 63.158 0.00 0.00 32.18 4.16
34 35 1.151921 TCCCAGTCCATGACCACCA 60.152 57.895 0.00 0.00 32.18 4.17
35 36 0.909610 TCTCCCAGTCCATGACCACC 60.910 60.000 0.00 0.00 32.18 4.61
36 37 0.984230 TTCTCCCAGTCCATGACCAC 59.016 55.000 0.00 0.00 32.18 4.16
37 38 1.741028 TTTCTCCCAGTCCATGACCA 58.259 50.000 0.00 0.00 32.18 4.02
38 39 2.422093 GGATTTCTCCCAGTCCATGACC 60.422 54.545 0.00 0.00 35.28 4.02
39 40 2.239654 TGGATTTCTCCCAGTCCATGAC 59.760 50.000 0.00 0.00 41.29 3.06
40 41 2.561187 TGGATTTCTCCCAGTCCATGA 58.439 47.619 0.00 0.00 41.29 3.07
41 42 3.589951 ATGGATTTCTCCCAGTCCATG 57.410 47.619 5.04 0.00 46.72 3.66
43 44 2.239654 GACATGGATTTCTCCCAGTCCA 59.760 50.000 0.00 0.00 44.22 4.02
44 45 2.743183 CGACATGGATTTCTCCCAGTCC 60.743 54.545 0.00 0.00 41.29 3.85
45 46 2.555199 CGACATGGATTTCTCCCAGTC 58.445 52.381 0.00 0.00 41.29 3.51
46 47 1.210478 CCGACATGGATTTCTCCCAGT 59.790 52.381 0.00 0.00 41.29 4.00
47 48 1.959042 CCGACATGGATTTCTCCCAG 58.041 55.000 0.00 0.00 41.29 4.45
48 49 0.107214 GCCGACATGGATTTCTCCCA 60.107 55.000 0.00 0.00 41.29 4.37
49 50 0.181350 AGCCGACATGGATTTCTCCC 59.819 55.000 0.00 0.00 41.29 4.30
50 51 1.672881 CAAGCCGACATGGATTTCTCC 59.327 52.381 0.00 0.00 46.53 3.71
51 52 1.064654 GCAAGCCGACATGGATTTCTC 59.935 52.381 0.00 0.00 46.53 2.87
52 53 1.098050 GCAAGCCGACATGGATTTCT 58.902 50.000 0.00 0.00 46.53 2.52
53 54 0.101219 GGCAAGCCGACATGGATTTC 59.899 55.000 0.00 0.00 46.53 2.17
54 55 1.322538 GGGCAAGCCGACATGGATTT 61.323 55.000 4.80 0.00 46.53 2.17
56 57 2.124151 GGGCAAGCCGACATGGAT 60.124 61.111 4.80 0.00 42.00 3.41
57 58 4.776322 CGGGCAAGCCGACATGGA 62.776 66.667 4.80 0.00 42.00 3.41
92 93 4.552365 ATCGATGGCGCCCACAGG 62.552 66.667 26.77 8.93 35.80 4.00
93 94 2.969238 GATCGATGGCGCCCACAG 60.969 66.667 26.77 13.05 35.80 3.66
94 95 4.545706 GGATCGATGGCGCCCACA 62.546 66.667 26.77 5.45 35.80 4.17
97 98 4.688966 GAGGGATCGATGGCGCCC 62.689 72.222 26.77 8.57 39.33 6.13
98 99 4.688966 GGAGGGATCGATGGCGCC 62.689 72.222 22.73 22.73 37.46 6.53
99 100 3.620785 AGGAGGGATCGATGGCGC 61.621 66.667 0.54 0.00 37.46 6.53
100 101 2.152297 CTCAGGAGGGATCGATGGCG 62.152 65.000 0.54 0.00 39.35 5.69
101 102 0.829602 TCTCAGGAGGGATCGATGGC 60.830 60.000 0.54 0.00 0.00 4.40
102 103 1.255882 CTCTCAGGAGGGATCGATGG 58.744 60.000 0.54 0.00 36.03 3.51
112 113 0.385029 CATCTGACGCCTCTCAGGAG 59.615 60.000 1.40 0.00 41.31 3.69
113 114 0.323816 ACATCTGACGCCTCTCAGGA 60.324 55.000 1.40 0.00 37.67 3.86
114 115 1.393603 TACATCTGACGCCTCTCAGG 58.606 55.000 1.40 0.00 38.62 3.86
115 116 2.030363 GGATACATCTGACGCCTCTCAG 60.030 54.545 0.00 0.00 39.35 3.35
116 117 1.957177 GGATACATCTGACGCCTCTCA 59.043 52.381 0.00 0.00 0.00 3.27
117 118 1.271102 GGGATACATCTGACGCCTCTC 59.729 57.143 0.00 0.00 39.74 3.20
118 119 1.133325 AGGGATACATCTGACGCCTCT 60.133 52.381 0.00 0.00 39.74 3.69
119 120 1.333177 AGGGATACATCTGACGCCTC 58.667 55.000 0.00 0.00 39.74 4.70
120 121 1.689273 GAAGGGATACATCTGACGCCT 59.311 52.381 0.00 0.00 39.74 5.52
121 122 1.270358 GGAAGGGATACATCTGACGCC 60.270 57.143 0.00 0.00 39.74 5.68
122 123 1.270358 GGGAAGGGATACATCTGACGC 60.270 57.143 0.00 0.00 39.74 5.19
123 124 1.344763 GGGGAAGGGATACATCTGACG 59.655 57.143 0.00 0.00 39.74 4.35
124 125 2.104963 GTGGGGAAGGGATACATCTGAC 59.895 54.545 0.00 0.00 39.74 3.51
125 126 2.408565 GTGGGGAAGGGATACATCTGA 58.591 52.381 0.00 0.00 39.74 3.27
126 127 1.421646 GGTGGGGAAGGGATACATCTG 59.578 57.143 0.00 0.00 39.74 2.90
127 128 1.010793 TGGTGGGGAAGGGATACATCT 59.989 52.381 0.00 0.00 39.74 2.90
128 129 1.518367 TGGTGGGGAAGGGATACATC 58.482 55.000 0.00 0.00 39.74 3.06
129 130 2.228978 ATGGTGGGGAAGGGATACAT 57.771 50.000 0.00 0.00 39.74 2.29
130 131 1.850345 GAATGGTGGGGAAGGGATACA 59.150 52.381 0.00 0.00 39.74 2.29
131 132 1.145119 GGAATGGTGGGGAAGGGATAC 59.855 57.143 0.00 0.00 0.00 2.24
132 133 1.529744 GGAATGGTGGGGAAGGGATA 58.470 55.000 0.00 0.00 0.00 2.59
133 134 1.296662 GGGAATGGTGGGGAAGGGAT 61.297 60.000 0.00 0.00 0.00 3.85
134 135 1.933812 GGGAATGGTGGGGAAGGGA 60.934 63.158 0.00 0.00 0.00 4.20
135 136 2.689813 GGGAATGGTGGGGAAGGG 59.310 66.667 0.00 0.00 0.00 3.95
136 137 2.689813 GGGGAATGGTGGGGAAGG 59.310 66.667 0.00 0.00 0.00 3.46
137 138 2.275418 CGGGGAATGGTGGGGAAG 59.725 66.667 0.00 0.00 0.00 3.46
138 139 2.533232 ACGGGGAATGGTGGGGAA 60.533 61.111 0.00 0.00 0.00 3.97
139 140 2.767424 TACACGGGGAATGGTGGGGA 62.767 60.000 0.00 0.00 38.46 4.81
140 141 2.302509 TACACGGGGAATGGTGGGG 61.303 63.158 0.00 0.00 38.46 4.96
141 142 1.078001 GTACACGGGGAATGGTGGG 60.078 63.158 0.00 0.00 38.46 4.61
142 143 0.392461 CAGTACACGGGGAATGGTGG 60.392 60.000 0.00 0.00 38.46 4.61
143 144 0.392461 CCAGTACACGGGGAATGGTG 60.392 60.000 8.62 0.00 39.98 4.17
144 145 1.988015 CCAGTACACGGGGAATGGT 59.012 57.895 8.62 0.00 0.00 3.55
145 146 4.954933 CCAGTACACGGGGAATGG 57.045 61.111 0.00 0.00 0.00 3.16
151 152 1.002990 GTTTCCCCCAGTACACGGG 60.003 63.158 12.45 12.45 44.07 5.28
152 153 1.002990 GGTTTCCCCCAGTACACGG 60.003 63.158 0.00 0.00 0.00 4.94
153 154 4.707791 GGTTTCCCCCAGTACACG 57.292 61.111 0.00 0.00 0.00 4.49
160 161 6.285619 GAACAAGTTCTAGGGTTTCCCCCA 62.286 50.000 5.72 0.00 44.99 4.96
161 162 3.813240 GAACAAGTTCTAGGGTTTCCCCC 60.813 52.174 5.72 0.00 43.00 5.40
162 163 3.418995 GAACAAGTTCTAGGGTTTCCCC 58.581 50.000 5.72 0.00 42.66 4.81
163 164 3.072211 CGAACAAGTTCTAGGGTTTCCC 58.928 50.000 10.83 0.00 39.60 3.97
164 165 3.072211 CCGAACAAGTTCTAGGGTTTCC 58.928 50.000 10.83 0.00 37.44 3.13
165 166 3.072211 CCCGAACAAGTTCTAGGGTTTC 58.928 50.000 14.31 0.00 36.26 2.78
166 167 2.812983 GCCCGAACAAGTTCTAGGGTTT 60.813 50.000 20.13 0.00 40.33 3.27
167 168 1.271217 GCCCGAACAAGTTCTAGGGTT 60.271 52.381 20.13 0.00 40.33 4.11
168 169 0.323957 GCCCGAACAAGTTCTAGGGT 59.676 55.000 20.13 0.00 40.33 4.34
169 170 0.323629 TGCCCGAACAAGTTCTAGGG 59.676 55.000 16.88 16.88 40.82 3.53
170 171 1.804748 GTTGCCCGAACAAGTTCTAGG 59.195 52.381 10.83 11.55 37.44 3.02
171 172 2.489971 TGTTGCCCGAACAAGTTCTAG 58.510 47.619 10.83 3.64 41.80 2.43
172 173 2.623878 TGTTGCCCGAACAAGTTCTA 57.376 45.000 10.83 0.00 41.80 2.10
173 174 3.487576 TGTTGCCCGAACAAGTTCT 57.512 47.368 10.83 0.00 41.80 3.01
179 180 1.945522 CATCGTTGTTGCCCGAACA 59.054 52.632 0.00 0.00 43.11 3.18
180 181 1.442017 GCATCGTTGTTGCCCGAAC 60.442 57.895 0.00 0.00 36.57 3.95
181 182 2.950673 GCATCGTTGTTGCCCGAA 59.049 55.556 0.00 0.00 36.57 4.30
186 187 3.340953 ATGGCGGCATCGTTGTTGC 62.341 57.895 20.18 0.01 39.41 4.17
187 188 1.226379 GATGGCGGCATCGTTGTTG 60.226 57.895 32.59 0.00 38.89 3.33
188 189 1.369091 GAGATGGCGGCATCGTTGTT 61.369 55.000 36.87 24.40 38.89 2.83
189 190 1.815421 GAGATGGCGGCATCGTTGT 60.815 57.895 36.87 24.74 38.89 3.32
190 191 1.162181 ATGAGATGGCGGCATCGTTG 61.162 55.000 36.87 0.00 38.89 4.10
191 192 0.464373 AATGAGATGGCGGCATCGTT 60.464 50.000 36.87 29.77 38.89 3.85
192 193 0.882042 GAATGAGATGGCGGCATCGT 60.882 55.000 36.87 27.63 38.89 3.73
193 194 1.572085 GGAATGAGATGGCGGCATCG 61.572 60.000 36.87 0.00 36.73 3.84
194 195 0.250640 AGGAATGAGATGGCGGCATC 60.251 55.000 37.04 37.04 0.00 3.91
195 196 0.184451 AAGGAATGAGATGGCGGCAT 59.816 50.000 26.11 26.11 0.00 4.40
196 197 0.464373 GAAGGAATGAGATGGCGGCA 60.464 55.000 16.34 16.34 0.00 5.69
197 198 0.179034 AGAAGGAATGAGATGGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
198 199 2.338577 AAGAAGGAATGAGATGGCGG 57.661 50.000 0.00 0.00 0.00 6.13
199 200 4.305769 CTCTAAGAAGGAATGAGATGGCG 58.694 47.826 0.00 0.00 0.00 5.69
200 201 4.102367 ACCTCTAAGAAGGAATGAGATGGC 59.898 45.833 0.00 0.00 38.87 4.40
201 202 5.130145 ACACCTCTAAGAAGGAATGAGATGG 59.870 44.000 0.00 0.00 38.87 3.51
202 203 6.232581 ACACCTCTAAGAAGGAATGAGATG 57.767 41.667 0.00 0.00 38.87 2.90
203 204 6.648192 CAACACCTCTAAGAAGGAATGAGAT 58.352 40.000 0.00 0.00 38.87 2.75
204 205 5.569630 GCAACACCTCTAAGAAGGAATGAGA 60.570 44.000 0.00 0.00 38.87 3.27
205 206 4.633565 GCAACACCTCTAAGAAGGAATGAG 59.366 45.833 0.00 0.00 38.87 2.90
206 207 4.287067 AGCAACACCTCTAAGAAGGAATGA 59.713 41.667 0.00 0.00 38.87 2.57
207 208 4.583871 AGCAACACCTCTAAGAAGGAATG 58.416 43.478 0.00 0.00 38.87 2.67
208 209 4.917906 AGCAACACCTCTAAGAAGGAAT 57.082 40.909 0.00 0.00 38.87 3.01
209 210 4.389374 CAAGCAACACCTCTAAGAAGGAA 58.611 43.478 0.00 0.00 38.87 3.36
210 211 3.244561 CCAAGCAACACCTCTAAGAAGGA 60.245 47.826 0.00 0.00 38.87 3.36
211 212 3.077359 CCAAGCAACACCTCTAAGAAGG 58.923 50.000 0.00 0.00 42.55 3.46
212 213 3.499918 CACCAAGCAACACCTCTAAGAAG 59.500 47.826 0.00 0.00 0.00 2.85
213 214 3.476552 CACCAAGCAACACCTCTAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
214 215 2.810400 GCACCAAGCAACACCTCTAAGA 60.810 50.000 0.00 0.00 44.79 2.10
215 216 1.537202 GCACCAAGCAACACCTCTAAG 59.463 52.381 0.00 0.00 44.79 2.18
216 217 1.604604 GCACCAAGCAACACCTCTAA 58.395 50.000 0.00 0.00 44.79 2.10
217 218 3.322514 GCACCAAGCAACACCTCTA 57.677 52.632 0.00 0.00 44.79 2.43
218 219 4.164258 GCACCAAGCAACACCTCT 57.836 55.556 0.00 0.00 44.79 3.69
233 234 4.015406 ATCCCGAAGTGCCGTGCA 62.015 61.111 0.00 0.00 35.60 4.57
234 235 3.499737 CATCCCGAAGTGCCGTGC 61.500 66.667 0.00 0.00 0.00 5.34
235 236 3.499737 GCATCCCGAAGTGCCGTG 61.500 66.667 0.00 0.00 35.35 4.94
236 237 3.706373 AGCATCCCGAAGTGCCGT 61.706 61.111 2.90 0.00 42.20 5.68
237 238 3.197790 CAGCATCCCGAAGTGCCG 61.198 66.667 2.90 0.00 42.20 5.69
238 239 2.825836 CCAGCATCCCGAAGTGCC 60.826 66.667 2.90 0.00 42.20 5.01
239 240 2.825836 CCCAGCATCCCGAAGTGC 60.826 66.667 0.00 0.00 41.57 4.40
240 241 1.153289 CTCCCAGCATCCCGAAGTG 60.153 63.158 0.00 0.00 0.00 3.16
241 242 3.036429 GCTCCCAGCATCCCGAAGT 62.036 63.158 0.00 0.00 41.89 3.01
242 243 2.203126 GCTCCCAGCATCCCGAAG 60.203 66.667 0.00 0.00 41.89 3.79
251 252 1.452108 GTACCACCATGCTCCCAGC 60.452 63.158 0.00 0.00 42.82 4.85
252 253 0.620556 AAGTACCACCATGCTCCCAG 59.379 55.000 0.00 0.00 0.00 4.45
253 254 0.618458 GAAGTACCACCATGCTCCCA 59.382 55.000 0.00 0.00 0.00 4.37
254 255 0.912486 AGAAGTACCACCATGCTCCC 59.088 55.000 0.00 0.00 0.00 4.30
255 256 2.633488 GAAGAAGTACCACCATGCTCC 58.367 52.381 0.00 0.00 0.00 4.70
256 257 2.271800 CGAAGAAGTACCACCATGCTC 58.728 52.381 0.00 0.00 0.00 4.26
257 258 1.066143 CCGAAGAAGTACCACCATGCT 60.066 52.381 0.00 0.00 0.00 3.79
258 259 1.066430 TCCGAAGAAGTACCACCATGC 60.066 52.381 0.00 0.00 0.00 4.06
259 260 3.262420 CTTCCGAAGAAGTACCACCATG 58.738 50.000 1.51 0.00 43.90 3.66
260 261 2.236395 CCTTCCGAAGAAGTACCACCAT 59.764 50.000 9.87 0.00 46.93 3.55
261 262 1.621814 CCTTCCGAAGAAGTACCACCA 59.378 52.381 9.87 0.00 46.93 4.17
262 263 1.622312 ACCTTCCGAAGAAGTACCACC 59.378 52.381 9.87 0.00 46.93 4.61
263 264 2.685100 CACCTTCCGAAGAAGTACCAC 58.315 52.381 9.87 0.00 46.93 4.16
264 265 1.001633 GCACCTTCCGAAGAAGTACCA 59.998 52.381 9.87 0.00 46.93 3.25
265 266 1.001633 TGCACCTTCCGAAGAAGTACC 59.998 52.381 9.87 0.00 46.93 3.34
266 267 2.338500 CTGCACCTTCCGAAGAAGTAC 58.662 52.381 9.87 0.00 46.93 2.73
267 268 1.337823 GCTGCACCTTCCGAAGAAGTA 60.338 52.381 9.87 0.79 46.93 2.24
268 269 0.603975 GCTGCACCTTCCGAAGAAGT 60.604 55.000 9.87 0.00 46.93 3.01
270 271 1.667830 CGCTGCACCTTCCGAAGAA 60.668 57.895 9.87 0.00 0.00 2.52
271 272 2.048222 CGCTGCACCTTCCGAAGA 60.048 61.111 9.87 0.00 0.00 2.87
272 273 3.121030 CCGCTGCACCTTCCGAAG 61.121 66.667 0.00 0.68 0.00 3.79
273 274 3.469863 AACCGCTGCACCTTCCGAA 62.470 57.895 0.00 0.00 0.00 4.30
274 275 3.936203 AACCGCTGCACCTTCCGA 61.936 61.111 0.00 0.00 0.00 4.55
275 276 3.726517 CAACCGCTGCACCTTCCG 61.727 66.667 0.00 0.00 0.00 4.30
288 289 1.754380 AAAAGGAAAGCCCGGCAACC 61.754 55.000 13.15 11.46 40.87 3.77
289 290 0.319555 GAAAAGGAAAGCCCGGCAAC 60.320 55.000 13.15 2.02 40.87 4.17
290 291 0.469144 AGAAAAGGAAAGCCCGGCAA 60.469 50.000 13.15 0.00 40.87 4.52
291 292 0.893727 GAGAAAAGGAAAGCCCGGCA 60.894 55.000 13.15 0.00 40.87 5.69
292 293 1.595993 GGAGAAAAGGAAAGCCCGGC 61.596 60.000 0.00 0.00 40.87 6.13
293 294 1.305930 CGGAGAAAAGGAAAGCCCGG 61.306 60.000 0.00 0.00 40.87 5.73
294 295 0.605589 ACGGAGAAAAGGAAAGCCCG 60.606 55.000 0.00 0.00 40.87 6.13
295 296 1.269723 CAACGGAGAAAAGGAAAGCCC 59.730 52.381 0.00 0.00 33.31 5.19
296 297 2.227194 TCAACGGAGAAAAGGAAAGCC 58.773 47.619 0.00 0.00 0.00 4.35
297 298 5.573146 CATATCAACGGAGAAAAGGAAAGC 58.427 41.667 0.00 0.00 0.00 3.51
298 299 5.449177 GGCATATCAACGGAGAAAAGGAAAG 60.449 44.000 0.00 0.00 0.00 2.62
299 300 4.398044 GGCATATCAACGGAGAAAAGGAAA 59.602 41.667 0.00 0.00 0.00 3.13
300 301 3.945285 GGCATATCAACGGAGAAAAGGAA 59.055 43.478 0.00 0.00 0.00 3.36
301 302 3.541632 GGCATATCAACGGAGAAAAGGA 58.458 45.455 0.00 0.00 0.00 3.36
302 303 2.287915 CGGCATATCAACGGAGAAAAGG 59.712 50.000 0.00 0.00 0.00 3.11
303 304 3.194861 TCGGCATATCAACGGAGAAAAG 58.805 45.455 0.00 0.00 0.00 2.27
304 305 3.254470 TCGGCATATCAACGGAGAAAA 57.746 42.857 0.00 0.00 0.00 2.29
305 306 2.971660 TCGGCATATCAACGGAGAAA 57.028 45.000 0.00 0.00 0.00 2.52
306 307 2.102420 ACATCGGCATATCAACGGAGAA 59.898 45.455 0.00 0.00 0.00 2.87
307 308 1.686587 ACATCGGCATATCAACGGAGA 59.313 47.619 0.00 0.00 0.00 3.71
308 309 2.061773 GACATCGGCATATCAACGGAG 58.938 52.381 0.00 0.00 0.00 4.63
309 310 1.601914 CGACATCGGCATATCAACGGA 60.602 52.381 0.00 0.00 35.37 4.69
310 311 0.784178 CGACATCGGCATATCAACGG 59.216 55.000 0.00 0.00 35.37 4.44
322 323 5.235186 AGAAGAGAAATAAATGCCGACATCG 59.765 40.000 0.00 0.00 34.62 3.84
323 324 6.610741 AGAAGAGAAATAAATGCCGACATC 57.389 37.500 0.00 0.00 34.62 3.06
324 325 7.396540 AAAGAAGAGAAATAAATGCCGACAT 57.603 32.000 0.00 0.00 38.49 3.06
325 326 6.817765 AAAGAAGAGAAATAAATGCCGACA 57.182 33.333 0.00 0.00 0.00 4.35
360 361 4.561326 GCATAGCAGAGCCCAAAAGAAAAA 60.561 41.667 0.00 0.00 0.00 1.94
361 362 3.056607 GCATAGCAGAGCCCAAAAGAAAA 60.057 43.478 0.00 0.00 0.00 2.29
362 363 2.493278 GCATAGCAGAGCCCAAAAGAAA 59.507 45.455 0.00 0.00 0.00 2.52
363 364 2.094675 GCATAGCAGAGCCCAAAAGAA 58.905 47.619 0.00 0.00 0.00 2.52
364 365 1.283029 AGCATAGCAGAGCCCAAAAGA 59.717 47.619 0.00 0.00 0.00 2.52
365 366 1.404391 CAGCATAGCAGAGCCCAAAAG 59.596 52.381 0.00 0.00 0.00 2.27
366 367 1.272092 ACAGCATAGCAGAGCCCAAAA 60.272 47.619 0.00 0.00 0.00 2.44
367 368 0.329261 ACAGCATAGCAGAGCCCAAA 59.671 50.000 0.00 0.00 0.00 3.28
368 369 0.393402 CACAGCATAGCAGAGCCCAA 60.393 55.000 0.00 0.00 0.00 4.12
369 370 1.222661 CACAGCATAGCAGAGCCCA 59.777 57.895 0.00 0.00 0.00 5.36
370 371 1.525535 CCACAGCATAGCAGAGCCC 60.526 63.158 0.00 0.00 0.00 5.19
371 372 2.185494 GCCACAGCATAGCAGAGCC 61.185 63.158 0.00 0.00 39.53 4.70
372 373 2.185494 GGCCACAGCATAGCAGAGC 61.185 63.158 0.00 0.00 42.56 4.09
373 374 1.525535 GGGCCACAGCATAGCAGAG 60.526 63.158 4.39 0.00 42.56 3.35
374 375 2.591753 GGGCCACAGCATAGCAGA 59.408 61.111 4.39 0.00 42.56 4.26
375 376 2.517875 GGGGCCACAGCATAGCAG 60.518 66.667 4.39 0.00 42.56 4.24
376 377 3.337409 TGGGGCCACAGCATAGCA 61.337 61.111 1.54 0.00 42.56 3.49
377 378 2.517875 CTGGGGCCACAGCATAGC 60.518 66.667 25.05 0.00 42.56 2.97
383 384 2.203538 AGTTTGCTGGGGCCACAG 60.204 61.111 31.74 31.74 41.41 3.66
384 385 2.521465 CAGTTTGCTGGGGCCACA 60.521 61.111 7.89 7.89 39.01 4.17
392 393 2.632377 ACCGATACATCCAGTTTGCTG 58.368 47.619 0.00 0.00 42.22 4.41
393 394 3.009723 CAACCGATACATCCAGTTTGCT 58.990 45.455 0.00 0.00 0.00 3.91
394 395 2.747446 ACAACCGATACATCCAGTTTGC 59.253 45.455 0.00 0.00 0.00 3.68
395 396 4.093408 CAGACAACCGATACATCCAGTTTG 59.907 45.833 0.00 0.00 0.00 2.93
396 397 4.253685 CAGACAACCGATACATCCAGTTT 58.746 43.478 0.00 0.00 0.00 2.66
397 398 3.260884 ACAGACAACCGATACATCCAGTT 59.739 43.478 0.00 0.00 0.00 3.16
398 399 2.832129 ACAGACAACCGATACATCCAGT 59.168 45.455 0.00 0.00 0.00 4.00
399 400 3.526931 ACAGACAACCGATACATCCAG 57.473 47.619 0.00 0.00 0.00 3.86
400 401 3.973206 AACAGACAACCGATACATCCA 57.027 42.857 0.00 0.00 0.00 3.41
401 402 6.920569 ATAAAACAGACAACCGATACATCC 57.079 37.500 0.00 0.00 0.00 3.51
408 409 8.757789 CGCTTTATATATAAAACAGACAACCGA 58.242 33.333 16.69 0.00 32.39 4.69
409 410 8.007716 CCGCTTTATATATAAAACAGACAACCG 58.992 37.037 16.69 6.19 32.39 4.44
410 411 8.287503 CCCGCTTTATATATAAAACAGACAACC 58.712 37.037 16.69 0.00 32.39 3.77
411 412 8.287503 CCCCGCTTTATATATAAAACAGACAAC 58.712 37.037 16.69 2.15 32.39 3.32
412 413 7.446013 CCCCCGCTTTATATATAAAACAGACAA 59.554 37.037 16.69 0.00 32.39 3.18
413 414 6.938030 CCCCCGCTTTATATATAAAACAGACA 59.062 38.462 16.69 0.00 32.39 3.41
414 415 7.373778 CCCCCGCTTTATATATAAAACAGAC 57.626 40.000 16.69 5.88 32.39 3.51
435 436 4.393990 CGTTGTACAATAAAGAGTTCCCCC 59.606 45.833 12.26 0.00 0.00 5.40
436 437 4.393990 CCGTTGTACAATAAAGAGTTCCCC 59.606 45.833 12.26 0.00 0.00 4.81
437 438 4.999311 ACCGTTGTACAATAAAGAGTTCCC 59.001 41.667 12.26 0.00 0.00 3.97
438 439 6.426025 AGAACCGTTGTACAATAAAGAGTTCC 59.574 38.462 12.26 0.00 32.34 3.62
439 440 7.417496 AGAACCGTTGTACAATAAAGAGTTC 57.583 36.000 12.26 16.08 0.00 3.01
440 441 7.117379 GCTAGAACCGTTGTACAATAAAGAGTT 59.883 37.037 12.26 9.10 0.00 3.01
441 442 6.589139 GCTAGAACCGTTGTACAATAAAGAGT 59.411 38.462 12.26 0.93 0.00 3.24
442 443 6.588756 TGCTAGAACCGTTGTACAATAAAGAG 59.411 38.462 12.26 5.27 0.00 2.85
443 444 6.457355 TGCTAGAACCGTTGTACAATAAAGA 58.543 36.000 12.26 0.00 0.00 2.52
444 445 6.588756 TCTGCTAGAACCGTTGTACAATAAAG 59.411 38.462 12.26 3.80 0.00 1.85
445 446 6.457355 TCTGCTAGAACCGTTGTACAATAAA 58.543 36.000 12.26 0.00 0.00 1.40
446 447 6.028146 TCTGCTAGAACCGTTGTACAATAA 57.972 37.500 12.26 0.00 0.00 1.40
447 448 5.648178 TCTGCTAGAACCGTTGTACAATA 57.352 39.130 12.26 0.00 0.00 1.90
448 449 4.530710 TCTGCTAGAACCGTTGTACAAT 57.469 40.909 12.26 0.00 0.00 2.71
449 450 4.325028 TTCTGCTAGAACCGTTGTACAA 57.675 40.909 3.59 3.59 0.00 2.41
450 451 4.325028 TTTCTGCTAGAACCGTTGTACA 57.675 40.909 0.00 0.00 33.26 2.90
451 452 5.857822 AATTTCTGCTAGAACCGTTGTAC 57.142 39.130 0.00 0.00 33.26 2.90
476 477 4.022416 CGATTCAATCCTTCCCACAACAAA 60.022 41.667 0.00 0.00 0.00 2.83
483 485 3.243873 CGAGATCGATTCAATCCTTCCCA 60.244 47.826 0.00 0.00 43.02 4.37
495 497 4.437239 AGAATGCTTGAACGAGATCGATT 58.563 39.130 9.58 0.00 43.02 3.34
516 518 2.315925 TTGATTAGCTTCCCGCAGAG 57.684 50.000 0.00 0.00 42.61 3.35
576 578 7.935405 AGGACTACCAACCCAGAAAATTATAA 58.065 34.615 0.00 0.00 38.94 0.98
591 593 2.112279 AACACTGGGAGGACTACCAA 57.888 50.000 4.56 0.00 44.45 3.67
602 604 5.982890 ACTTCATCCAAAATAACACTGGG 57.017 39.130 0.00 0.00 0.00 4.45
652 654 3.844211 AGCCCTCTGGTGTACTTTATTGA 59.156 43.478 0.00 0.00 0.00 2.57
681 683 8.542953 CAAAGTGCAGGAAAATCTTCTTTTTAC 58.457 33.333 0.00 0.00 30.82 2.01
682 684 7.710475 CCAAAGTGCAGGAAAATCTTCTTTTTA 59.290 33.333 0.00 0.00 0.00 1.52
688 690 4.037923 TGACCAAAGTGCAGGAAAATCTTC 59.962 41.667 0.00 0.00 0.00 2.87
689 691 3.960102 TGACCAAAGTGCAGGAAAATCTT 59.040 39.130 0.00 0.00 0.00 2.40
690 692 3.565307 TGACCAAAGTGCAGGAAAATCT 58.435 40.909 0.00 0.00 0.00 2.40
691 693 3.319122 ACTGACCAAAGTGCAGGAAAATC 59.681 43.478 0.00 0.00 34.05 2.17
692 694 3.299503 ACTGACCAAAGTGCAGGAAAAT 58.700 40.909 0.00 0.00 34.05 1.82
695 697 3.072330 TCATACTGACCAAAGTGCAGGAA 59.928 43.478 0.00 0.00 34.05 3.36
696 698 2.637382 TCATACTGACCAAAGTGCAGGA 59.363 45.455 0.00 0.00 34.05 3.86
697 699 3.005554 CTCATACTGACCAAAGTGCAGG 58.994 50.000 0.00 0.00 34.05 4.85
698 700 3.668447 ACTCATACTGACCAAAGTGCAG 58.332 45.455 0.00 0.00 35.81 4.41
699 701 3.769739 ACTCATACTGACCAAAGTGCA 57.230 42.857 0.00 0.00 0.00 4.57
700 702 6.554334 TTAAACTCATACTGACCAAAGTGC 57.446 37.500 0.00 0.00 0.00 4.40
701 703 8.402472 TGTTTTAAACTCATACTGACCAAAGTG 58.598 33.333 9.33 0.00 0.00 3.16
702 704 8.514330 TGTTTTAAACTCATACTGACCAAAGT 57.486 30.769 9.33 0.00 0.00 2.66
703 705 9.965824 AATGTTTTAAACTCATACTGACCAAAG 57.034 29.630 9.33 0.00 0.00 2.77
706 708 9.743057 CAAAATGTTTTAAACTCATACTGACCA 57.257 29.630 9.33 0.00 0.00 4.02
707 709 9.744468 ACAAAATGTTTTAAACTCATACTGACC 57.256 29.630 9.33 0.00 0.00 4.02
750 753 7.330900 TCCACCACGAAAACTTAACAATTTA 57.669 32.000 0.00 0.00 0.00 1.40
751 754 6.210287 TCCACCACGAAAACTTAACAATTT 57.790 33.333 0.00 0.00 0.00 1.82
767 770 5.278463 CCGATCCAATGAAAATATCCACCAC 60.278 44.000 0.00 0.00 0.00 4.16
775 778 5.825679 CACCTAACCCGATCCAATGAAAATA 59.174 40.000 0.00 0.00 0.00 1.40
776 779 4.644685 CACCTAACCCGATCCAATGAAAAT 59.355 41.667 0.00 0.00 0.00 1.82
777 780 4.013728 CACCTAACCCGATCCAATGAAAA 58.986 43.478 0.00 0.00 0.00 2.29
782 1168 1.887797 TCCACCTAACCCGATCCAAT 58.112 50.000 0.00 0.00 0.00 3.16
783 1169 1.887797 ATCCACCTAACCCGATCCAA 58.112 50.000 0.00 0.00 0.00 3.53
786 1172 5.617252 TGAAAATATCCACCTAACCCGATC 58.383 41.667 0.00 0.00 0.00 3.69
795 1181 6.502138 TCCCTTGAAATGAAAATATCCACCT 58.498 36.000 0.00 0.00 0.00 4.00
810 1196 3.445805 GCCACCGATTTATTCCCTTGAAA 59.554 43.478 0.00 0.00 33.32 2.69
811 1197 3.020984 GCCACCGATTTATTCCCTTGAA 58.979 45.455 0.00 0.00 34.33 2.69
812 1198 2.025793 TGCCACCGATTTATTCCCTTGA 60.026 45.455 0.00 0.00 0.00 3.02
813 1199 2.374184 TGCCACCGATTTATTCCCTTG 58.626 47.619 0.00 0.00 0.00 3.61
814 1200 2.818751 TGCCACCGATTTATTCCCTT 57.181 45.000 0.00 0.00 0.00 3.95
815 1201 2.818751 TTGCCACCGATTTATTCCCT 57.181 45.000 0.00 0.00 0.00 4.20
818 1204 3.485743 GCGAAATTGCCACCGATTTATTC 59.514 43.478 0.00 0.00 35.63 1.75
849 1235 6.726490 TGAAGCTTATTACAGTACTAGGGG 57.274 41.667 0.00 0.00 0.00 4.79
852 1238 6.806751 TGGCTGAAGCTTATTACAGTACTAG 58.193 40.000 12.84 0.00 41.70 2.57
853 1239 6.785337 TGGCTGAAGCTTATTACAGTACTA 57.215 37.500 12.84 0.00 41.70 1.82
855 1241 5.875359 ACTTGGCTGAAGCTTATTACAGTAC 59.125 40.000 12.84 8.13 41.70 2.73
858 1244 4.937620 TGACTTGGCTGAAGCTTATTACAG 59.062 41.667 0.00 3.48 41.70 2.74
904 1321 0.036577 GAGAAGAAGCAGGAGCAGCA 60.037 55.000 0.00 0.00 45.49 4.41
905 1322 0.744057 GGAGAAGAAGCAGGAGCAGC 60.744 60.000 0.00 0.00 45.49 5.25
1119 2043 4.353737 CCAACGAATCGCATCAAATTCAT 58.646 39.130 1.15 0.00 32.55 2.57
1300 2225 1.402787 AGTGCTGAACAAAAGGTGGG 58.597 50.000 0.00 0.00 0.00 4.61
1302 2227 4.107622 CAAGAAGTGCTGAACAAAAGGTG 58.892 43.478 0.00 0.00 0.00 4.00
1303 2228 3.131046 CCAAGAAGTGCTGAACAAAAGGT 59.869 43.478 0.00 0.00 0.00 3.50
1306 2237 3.360867 TCCCAAGAAGTGCTGAACAAAA 58.639 40.909 0.00 0.00 0.00 2.44
1337 2268 1.134907 GGCGTCGGGAATCAAGAACTA 60.135 52.381 0.00 0.00 0.00 2.24
1407 2338 2.029649 CACAAGATGCTGAAACCTTGGG 60.030 50.000 0.00 0.00 40.02 4.12
1497 2595 5.009410 GGTCCAATGAAGAAATAGGCATGAG 59.991 44.000 0.00 0.00 0.00 2.90
1511 2609 2.799126 ATAAGTGGCGGTCCAATGAA 57.201 45.000 0.00 0.00 45.53 2.57
1512 2610 2.799126 AATAAGTGGCGGTCCAATGA 57.201 45.000 0.00 0.00 45.53 2.57
1513 2611 3.882888 ACATAATAAGTGGCGGTCCAATG 59.117 43.478 0.00 0.00 45.53 2.82
1545 2643 4.730487 CCTGCAAGACCTTCCAGG 57.270 61.111 5.42 5.42 42.49 4.45
1624 2722 1.589716 GCATCTCCACTTGGGTGCAC 61.590 60.000 8.80 8.80 41.75 4.57
1667 2765 3.326588 AGTGTGTAAGGGTATGAAGCACA 59.673 43.478 0.00 0.00 33.71 4.57
1678 2776 7.589954 CGAATTAAAGACAAAAGTGTGTAAGGG 59.410 37.037 0.00 0.00 38.41 3.95
1707 2805 3.003480 GTCTTCTAGGCAAGCAAACGAT 58.997 45.455 0.00 0.00 0.00 3.73
1766 2864 6.014669 CCAACCCCAATTAAAAACTGATCAGA 60.015 38.462 29.27 5.83 0.00 3.27
1768 2866 5.012561 CCCAACCCCAATTAAAAACTGATCA 59.987 40.000 0.00 0.00 0.00 2.92
1835 2933 9.778741 ATACTCTTCAGAAAAAGTGTAACATCA 57.221 29.630 7.75 0.00 41.43 3.07
1849 2947 3.519107 TGGATGCCACATACTCTTCAGAA 59.481 43.478 0.00 0.00 0.00 3.02
1880 2978 0.458370 CCGGCAAGCTTAATTGTGGC 60.458 55.000 0.00 0.00 32.56 5.01
1959 3057 3.030291 ACACAGGCTTTTGGAATGTCAA 58.970 40.909 0.00 0.00 0.00 3.18
2161 3259 5.068987 CCTGATTCAAGTTGGAGAAAACCAA 59.931 40.000 2.34 0.00 46.02 3.67
2162 3260 4.584325 CCTGATTCAAGTTGGAGAAAACCA 59.416 41.667 2.34 0.00 38.24 3.67
2163 3261 4.559502 GCCTGATTCAAGTTGGAGAAAACC 60.560 45.833 2.34 0.00 0.00 3.27
2324 3538 5.465532 TGCAAATCCTTACTGAAAATGCA 57.534 34.783 0.00 0.00 38.78 3.96
2948 4339 4.973168 TCAAGATGTTTGGCTCAGTAGTT 58.027 39.130 0.00 0.00 0.00 2.24
3384 4801 5.345202 CACAACATTCAGTAGTCGGTACTTC 59.655 44.000 0.00 0.00 40.27 3.01
3468 4892 9.032420 CCACTTTACCTACTCGATTAAATCTTC 57.968 37.037 0.00 0.00 0.00 2.87
3579 5292 8.243426 CGGAAAATTTATTTCAGAGTCATGGAA 58.757 33.333 0.00 0.00 0.00 3.53
3606 5319 6.381801 GGTCAACCAATAAAGATGTCAACAG 58.618 40.000 0.00 0.00 35.64 3.16
3629 5343 1.754234 CCCTTCCCTGCAAATCCGG 60.754 63.158 0.00 0.00 0.00 5.14
3785 5499 1.493871 AGGATCTGATTGGCTTCCCAG 59.506 52.381 0.00 0.00 43.37 4.45
4177 5899 9.530633 AACCAGTATCAATCGAAGTTATAGAAC 57.469 33.333 0.00 0.00 35.64 3.01
4271 5995 0.251634 TGATTCACCAGCGCACCATA 59.748 50.000 11.47 0.00 0.00 2.74
4355 6079 8.817100 TGCTATTATTAGACAGACATTTCAACG 58.183 33.333 0.00 0.00 0.00 4.10
4467 6193 1.107114 GATGAGCGAGTCCTTCCTCA 58.893 55.000 0.00 0.00 37.45 3.86
4658 6384 0.037975 GCAAAATGTGGTGGCTGAGG 60.038 55.000 0.00 0.00 0.00 3.86
4712 6443 4.039973 CACTAATACCTTCGATAGCCCCAA 59.960 45.833 0.00 0.00 0.00 4.12
4723 6454 4.757149 GCATGGATGGACACTAATACCTTC 59.243 45.833 0.00 0.00 0.00 3.46
4733 6464 0.181114 TGCTAGGCATGGATGGACAC 59.819 55.000 0.00 0.00 31.71 3.67
4754 6485 3.871594 GTCGAATGTTGACCTTGATAGGG 59.128 47.826 0.00 0.00 46.58 3.53
4756 6487 5.503031 GCATGTCGAATGTTGACCTTGATAG 60.503 44.000 0.00 0.00 35.46 2.08
4841 6573 7.272731 CAGCACAACTCAAAATCTTGATACATG 59.727 37.037 0.00 0.00 40.78 3.21
4903 6635 4.804139 CCCGTAGTTACATGACTGAACATC 59.196 45.833 0.00 0.00 0.00 3.06
4924 6656 1.824852 CCACCCATTTTCTAACTGCCC 59.175 52.381 0.00 0.00 0.00 5.36
4926 6658 2.890945 ACACCACCCATTTTCTAACTGC 59.109 45.455 0.00 0.00 0.00 4.40
4935 6667 5.396324 GGAGAAAAGAAAACACCACCCATTT 60.396 40.000 0.00 0.00 0.00 2.32
4938 6670 3.028130 GGAGAAAAGAAAACACCACCCA 58.972 45.455 0.00 0.00 0.00 4.51
5048 6780 8.783093 TGATTTTCGAACAACAATGTCTATCTT 58.217 29.630 0.00 0.00 39.40 2.40
5049 6781 8.322906 TGATTTTCGAACAACAATGTCTATCT 57.677 30.769 0.00 0.00 39.40 1.98
5050 6782 8.230486 ACTGATTTTCGAACAACAATGTCTATC 58.770 33.333 0.00 0.00 39.40 2.08
5052 6784 7.490962 ACTGATTTTCGAACAACAATGTCTA 57.509 32.000 0.00 0.00 39.40 2.59
5053 6785 6.377327 ACTGATTTTCGAACAACAATGTCT 57.623 33.333 0.00 0.00 39.40 3.41
5054 6786 7.449934 AAACTGATTTTCGAACAACAATGTC 57.550 32.000 0.00 0.00 39.40 3.06
5055 6787 7.449934 GAAACTGATTTTCGAACAACAATGT 57.550 32.000 0.00 0.00 36.51 2.71
5067 6799 3.074412 TCGGGCTCAGAAACTGATTTTC 58.926 45.455 1.92 0.00 43.67 2.29
5068 6800 3.077359 CTCGGGCTCAGAAACTGATTTT 58.923 45.455 1.92 0.00 39.92 1.82
5069 6801 2.704572 CTCGGGCTCAGAAACTGATTT 58.295 47.619 1.92 0.00 39.92 2.17
5070 6802 1.677217 GCTCGGGCTCAGAAACTGATT 60.677 52.381 0.00 0.00 39.92 2.57
5071 6803 0.107945 GCTCGGGCTCAGAAACTGAT 60.108 55.000 0.00 0.00 39.92 2.90
5072 6804 1.293498 GCTCGGGCTCAGAAACTGA 59.707 57.895 0.00 0.00 38.25 3.41
5073 6805 3.882025 GCTCGGGCTCAGAAACTG 58.118 61.111 0.00 0.00 35.22 3.16
5083 6815 1.596477 GGATCATGTGAGCTCGGGC 60.596 63.158 9.64 0.00 39.06 6.13
5084 6816 0.249784 CAGGATCATGTGAGCTCGGG 60.250 60.000 9.64 0.00 0.00 5.14
5085 6817 0.749049 TCAGGATCATGTGAGCTCGG 59.251 55.000 9.64 0.00 0.00 4.63
5086 6818 2.591571 TTCAGGATCATGTGAGCTCG 57.408 50.000 9.64 0.00 0.00 5.03
5087 6819 4.706035 AGATTTCAGGATCATGTGAGCTC 58.294 43.478 6.82 6.82 0.00 4.09
5088 6820 4.774660 AGATTTCAGGATCATGTGAGCT 57.225 40.909 7.33 2.73 0.00 4.09
5089 6821 5.236047 GTGTAGATTTCAGGATCATGTGAGC 59.764 44.000 7.33 0.36 0.00 4.26
5090 6822 5.757320 GGTGTAGATTTCAGGATCATGTGAG 59.243 44.000 7.33 0.00 0.00 3.51
5091 6823 5.189539 TGGTGTAGATTTCAGGATCATGTGA 59.810 40.000 7.33 0.00 0.00 3.58
5092 6824 5.295292 GTGGTGTAGATTTCAGGATCATGTG 59.705 44.000 7.33 0.00 0.00 3.21
5093 6825 5.431765 GTGGTGTAGATTTCAGGATCATGT 58.568 41.667 7.33 0.00 0.00 3.21
5094 6826 4.818546 GGTGGTGTAGATTTCAGGATCATG 59.181 45.833 0.00 0.00 0.00 3.07
5095 6827 4.443457 CGGTGGTGTAGATTTCAGGATCAT 60.443 45.833 0.00 0.00 0.00 2.45
5096 6828 3.118775 CGGTGGTGTAGATTTCAGGATCA 60.119 47.826 0.00 0.00 0.00 2.92
5097 6829 3.132289 TCGGTGGTGTAGATTTCAGGATC 59.868 47.826 0.00 0.00 0.00 3.36
5098 6830 3.104512 TCGGTGGTGTAGATTTCAGGAT 58.895 45.455 0.00 0.00 0.00 3.24
5099 6831 2.531771 TCGGTGGTGTAGATTTCAGGA 58.468 47.619 0.00 0.00 0.00 3.86
5100 6832 3.543680 ATCGGTGGTGTAGATTTCAGG 57.456 47.619 0.00 0.00 0.00 3.86
5101 6833 4.330074 GTGAATCGGTGGTGTAGATTTCAG 59.670 45.833 0.00 0.00 35.06 3.02
5102 6834 4.250464 GTGAATCGGTGGTGTAGATTTCA 58.750 43.478 0.00 0.00 35.06 2.69
5103 6835 4.250464 TGTGAATCGGTGGTGTAGATTTC 58.750 43.478 0.00 0.00 35.06 2.17
5104 6836 4.280436 TGTGAATCGGTGGTGTAGATTT 57.720 40.909 0.00 0.00 35.06 2.17
5105 6837 3.973206 TGTGAATCGGTGGTGTAGATT 57.027 42.857 0.00 0.00 37.32 2.40
5106 6838 3.197766 ACATGTGAATCGGTGGTGTAGAT 59.802 43.478 0.00 0.00 0.00 1.98
5107 6839 2.565391 ACATGTGAATCGGTGGTGTAGA 59.435 45.455 0.00 0.00 0.00 2.59
5108 6840 2.672874 CACATGTGAATCGGTGGTGTAG 59.327 50.000 21.64 0.00 0.00 2.74
5109 6841 2.614229 CCACATGTGAATCGGTGGTGTA 60.614 50.000 27.46 0.00 44.47 2.90
5110 6842 1.522668 CACATGTGAATCGGTGGTGT 58.477 50.000 21.64 0.00 0.00 4.16
5111 6843 0.804364 CCACATGTGAATCGGTGGTG 59.196 55.000 27.46 2.17 44.47 4.17
5112 6844 3.248043 CCACATGTGAATCGGTGGT 57.752 52.632 27.46 0.00 44.47 4.16
5114 6846 1.942657 GGATCCACATGTGAATCGGTG 59.057 52.381 27.46 8.49 0.00 4.94
5115 6847 1.473257 CGGATCCACATGTGAATCGGT 60.473 52.381 27.46 6.34 0.00 4.69
5116 6848 1.220529 CGGATCCACATGTGAATCGG 58.779 55.000 27.46 21.30 0.00 4.18
5117 6849 1.594397 CACGGATCCACATGTGAATCG 59.406 52.381 27.46 23.16 34.29 3.34
5118 6850 1.331756 GCACGGATCCACATGTGAATC 59.668 52.381 27.46 21.70 34.29 2.52
5119 6851 1.382522 GCACGGATCCACATGTGAAT 58.617 50.000 27.46 13.34 34.29 2.57
5120 6852 0.676466 GGCACGGATCCACATGTGAA 60.676 55.000 27.46 7.51 34.29 3.18
5166 6898 1.202879 AGCGGTTCAGTGGGAAAATGA 60.203 47.619 0.00 0.00 37.23 2.57
5233 6965 1.153025 GATCCATCAGCCTGCTGCA 60.153 57.895 14.22 0.88 44.83 4.41
5252 6984 0.886490 CCTGGCTCTGAAAACACGCT 60.886 55.000 0.00 0.00 0.00 5.07
5260 6992 2.667418 GCTCAGCCTGGCTCTGAA 59.333 61.111 20.49 3.80 39.77 3.02
5329 7852 6.127366 GCATTTAAAATGGGGATTCTCACTGA 60.127 38.462 0.00 0.00 0.00 3.41
5330 7853 6.044682 GCATTTAAAATGGGGATTCTCACTG 58.955 40.000 0.00 0.00 0.00 3.66
5401 7925 2.550180 GCTGAAACTCAGTTTGGTCTCC 59.450 50.000 7.75 0.00 45.94 3.71
5587 8114 4.672413 GTGTTTTTGTGAGCTTTGATCGAG 59.328 41.667 0.00 0.00 0.00 4.04
5589 8116 4.204978 GTGTGTTTTTGTGAGCTTTGATCG 59.795 41.667 0.00 0.00 0.00 3.69
5592 8119 3.671971 CGGTGTGTTTTTGTGAGCTTTGA 60.672 43.478 0.00 0.00 0.00 2.69
5614 8141 6.510879 AATTTGTAGTTCCGAGGATTTTCC 57.489 37.500 0.00 0.00 36.58 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.