Multiple sequence alignment - TraesCS1A01G239800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G239800 chr1A 100.000 4913 0 0 1 4913 426892885 426887973 0.000000e+00 9073.0
1 TraesCS1A01G239800 chr1A 90.361 83 5 2 1544 1624 199208069 199207988 6.730000e-19 106.0
2 TraesCS1A01G239800 chr1D 92.459 2652 127 32 981 3606 329735126 329732522 0.000000e+00 3722.0
3 TraesCS1A01G239800 chr1D 91.679 697 38 6 4237 4913 329731883 329731187 0.000000e+00 948.0
4 TraesCS1A01G239800 chr1D 83.122 948 123 18 6 932 329736425 329735494 0.000000e+00 830.0
5 TraesCS1A01G239800 chr1D 91.367 417 15 8 3807 4215 329732270 329731867 7.190000e-153 551.0
6 TraesCS1A01G239800 chr1D 92.593 81 5 1 3661 3741 329732366 329732287 1.120000e-21 115.0
7 TraesCS1A01G239800 chr1B 93.116 1380 62 16 2078 3453 444690613 444689263 0.000000e+00 1991.0
8 TraesCS1A01G239800 chr1B 87.166 1122 83 30 393 1486 444691875 444690787 0.000000e+00 1218.0
9 TraesCS1A01G239800 chr1B 91.246 674 34 11 4264 4913 444688566 444687894 0.000000e+00 894.0
10 TraesCS1A01G239800 chr1B 90.160 437 31 9 3807 4238 444688977 444688548 4.300000e-155 558.0
11 TraesCS1A01G239800 chr1B 82.482 274 20 8 3495 3741 444689266 444688994 1.070000e-51 215.0
12 TraesCS1A01G239800 chr1B 87.047 193 17 6 1533 1718 444690788 444690597 1.390000e-50 211.0
13 TraesCS1A01G239800 chr1B 92.157 51 4 0 329 379 444710900 444710850 6.820000e-09 73.1
14 TraesCS1A01G239800 chr3B 90.337 445 39 3 2716 3160 179384038 179384478 9.170000e-162 580.0
15 TraesCS1A01G239800 chr3A 89.910 446 40 4 2716 3160 521357356 521356915 1.980000e-158 569.0
16 TraesCS1A01G239800 chr5D 87.500 440 47 7 2725 3160 32757588 32758023 7.340000e-138 501.0
17 TraesCS1A01G239800 chr5B 84.270 178 19 7 1324 1498 666073501 666073672 1.090000e-36 165.0
18 TraesCS1A01G239800 chr5A 88.462 130 10 4 1372 1498 21833602 21833729 8.520000e-33 152.0
19 TraesCS1A01G239800 chr5A 87.500 128 11 5 1372 1496 568933410 568933535 5.130000e-30 143.0
20 TraesCS1A01G239800 chr4A 88.462 130 10 4 1372 1498 634050537 634050410 8.520000e-33 152.0
21 TraesCS1A01G239800 chrUn 87.786 131 11 4 1371 1498 28595377 28595249 1.100000e-31 148.0
22 TraesCS1A01G239800 chr2D 87.692 130 11 4 1372 1498 336915669 336915542 3.960000e-31 147.0
23 TraesCS1A01G239800 chr3D 86.923 130 12 4 1372 1498 510786615 510786742 1.840000e-29 141.0
24 TraesCS1A01G239800 chr7D 93.651 63 3 1 1544 1606 455874296 455874235 5.240000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G239800 chr1A 426887973 426892885 4912 True 9073.000000 9073 100.000000 1 4913 1 chr1A.!!$R2 4912
1 TraesCS1A01G239800 chr1D 329731187 329736425 5238 True 1233.200000 3722 90.244000 6 4913 5 chr1D.!!$R1 4907
2 TraesCS1A01G239800 chr1B 444687894 444691875 3981 True 847.833333 1991 88.536167 393 4913 6 chr1B.!!$R2 4520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 66 0.036105 TCCTACGACTGTGGCGTCTA 60.036 55.000 0.41 0.0 42.62 2.59 F
364 369 0.038251 TGTGTGCTAGCCAACGAGAG 60.038 55.000 13.29 0.0 0.00 3.20 F
1177 1531 0.108615 GTGTCCTGCGCAGTAGATGT 60.109 55.000 33.75 0.0 45.23 3.06 F
1507 1867 0.321653 ATGTCCACTCGGAACTTGGC 60.322 55.000 0.00 0.0 45.20 4.52 F
1858 2237 1.084289 GCCCATTTGGTCTCGTGTAC 58.916 55.000 0.00 0.0 36.04 2.90 F
2793 3175 1.824852 TGTGCTGGACGACATAGTGAT 59.175 47.619 0.00 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1310 1665 0.039527 GGCACCACCGATTCAACAAC 60.040 55.000 0.00 0.0 0.00 3.32 R
1748 2115 1.533129 GCACCAACGGTTCAAACAGAC 60.533 52.381 0.00 0.0 31.02 3.51 R
3161 3544 1.216122 CGATCTTGAGCTGCTTAGCC 58.784 55.000 2.53 0.0 34.90 3.93 R
3171 3554 2.522836 AGCATAGCCACGATCTTGAG 57.477 50.000 0.00 0.0 0.00 3.02 R
3811 4316 0.037303 CCATCTGCACAGAACAGGGT 59.963 55.000 4.14 0.0 41.36 4.34 R
4280 4796 0.182061 GGCAGGATCATCCAAGCTCA 59.818 55.000 17.73 0.0 39.61 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.093024 TGGAAGTAGAAAGGGAGTGTTATTAGG 60.093 40.741 0.00 0.00 0.00 2.69
35 37 8.368668 AGAAAGGGAGTGTTATTAGGAATATCG 58.631 37.037 0.00 0.00 0.00 2.92
41 43 6.456501 AGTGTTATTAGGAATATCGGCACTC 58.543 40.000 0.00 0.00 0.00 3.51
49 51 3.258372 GGAATATCGGCACTCATGTCCTA 59.742 47.826 0.00 0.00 0.00 2.94
50 52 3.944055 ATATCGGCACTCATGTCCTAC 57.056 47.619 0.00 0.00 0.00 3.18
51 53 0.385751 ATCGGCACTCATGTCCTACG 59.614 55.000 0.00 0.00 0.00 3.51
52 54 0.678684 TCGGCACTCATGTCCTACGA 60.679 55.000 0.00 0.00 0.00 3.43
54 56 0.818296 GGCACTCATGTCCTACGACT 59.182 55.000 0.00 0.00 39.94 4.18
55 57 1.469940 GGCACTCATGTCCTACGACTG 60.470 57.143 0.00 0.00 39.94 3.51
56 58 1.202582 GCACTCATGTCCTACGACTGT 59.797 52.381 0.00 0.00 39.94 3.55
57 59 2.868662 CACTCATGTCCTACGACTGTG 58.131 52.381 0.00 0.00 39.94 3.66
58 60 1.819288 ACTCATGTCCTACGACTGTGG 59.181 52.381 0.00 0.00 39.94 4.17
59 61 0.530744 TCATGTCCTACGACTGTGGC 59.469 55.000 0.00 0.00 39.94 5.01
60 62 0.802222 CATGTCCTACGACTGTGGCG 60.802 60.000 0.00 0.00 39.94 5.69
61 63 1.248785 ATGTCCTACGACTGTGGCGT 61.249 55.000 3.41 3.41 45.01 5.68
62 64 1.154073 GTCCTACGACTGTGGCGTC 60.154 63.158 0.41 0.00 42.62 5.19
63 65 1.303074 TCCTACGACTGTGGCGTCT 60.303 57.895 0.41 0.00 42.62 4.18
64 66 0.036105 TCCTACGACTGTGGCGTCTA 60.036 55.000 0.41 0.00 42.62 2.59
79 84 3.637694 GGCGTCTAAGATACTCTTCCCTT 59.362 47.826 0.00 0.00 37.89 3.95
89 94 2.234143 ACTCTTCCCTTCAAGCTTTGC 58.766 47.619 0.00 0.00 0.00 3.68
108 113 4.241555 GGCGAGCCGTGGATCCAT 62.242 66.667 19.62 0.30 0.00 3.41
112 117 1.459455 CGAGCCGTGGATCCATCTCT 61.459 60.000 25.70 19.47 0.00 3.10
118 123 2.230992 CCGTGGATCCATCTCTCATCTC 59.769 54.545 19.62 0.00 0.00 2.75
122 127 2.494250 GGATCCATCTCTCATCTCCCCA 60.494 54.545 6.95 0.00 0.00 4.96
132 137 0.979709 CATCTCCCCACTGCTCAGGA 60.980 60.000 1.66 0.00 0.00 3.86
163 168 1.269778 TGATGCCTCGGCTTCGATTAG 60.270 52.381 16.14 0.00 44.86 1.73
166 171 1.337071 TGCCTCGGCTTCGATTAGTAG 59.663 52.381 9.65 0.00 42.46 2.57
171 176 5.213675 CCTCGGCTTCGATTAGTAGTTTAG 58.786 45.833 0.00 0.00 42.46 1.85
172 177 5.179045 TCGGCTTCGATTAGTAGTTTAGG 57.821 43.478 0.00 0.00 38.07 2.69
173 178 3.734735 CGGCTTCGATTAGTAGTTTAGGC 59.265 47.826 0.00 0.00 35.61 3.93
181 186 9.933723 TTCGATTAGTAGTTTAGGCTAGTTTTT 57.066 29.630 0.00 0.00 0.00 1.94
205 210 6.598753 TTTTCTTTCTGAGTAGTGTTTCGG 57.401 37.500 0.00 0.00 0.00 4.30
208 213 2.724977 TCTGAGTAGTGTTTCGGCAG 57.275 50.000 0.00 0.00 0.00 4.85
212 217 2.560981 TGAGTAGTGTTTCGGCAGATGA 59.439 45.455 0.00 0.00 0.00 2.92
213 218 3.195610 TGAGTAGTGTTTCGGCAGATGAT 59.804 43.478 0.00 0.00 0.00 2.45
231 236 6.259608 CAGATGATGGCTCTTTATTTTCGAGT 59.740 38.462 0.00 0.00 0.00 4.18
241 246 8.287503 GCTCTTTATTTTCGAGTTGGTCTTTTA 58.712 33.333 0.00 0.00 0.00 1.52
244 249 8.736751 TTTATTTTCGAGTTGGTCTTTTATGC 57.263 30.769 0.00 0.00 0.00 3.14
246 251 6.385649 TTTTCGAGTTGGTCTTTTATGCTT 57.614 33.333 0.00 0.00 0.00 3.91
247 252 5.607119 TTCGAGTTGGTCTTTTATGCTTC 57.393 39.130 0.00 0.00 0.00 3.86
254 259 4.442706 TGGTCTTTTATGCTTCGATCCTC 58.557 43.478 0.00 0.00 0.00 3.71
257 262 4.747605 GTCTTTTATGCTTCGATCCTCCTC 59.252 45.833 0.00 0.00 0.00 3.71
258 263 4.405680 TCTTTTATGCTTCGATCCTCCTCA 59.594 41.667 0.00 0.00 0.00 3.86
267 272 1.746220 CGATCCTCCTCAAGTTCGTCT 59.254 52.381 0.00 0.00 0.00 4.18
270 275 4.319911 CGATCCTCCTCAAGTTCGTCTATC 60.320 50.000 0.00 0.00 0.00 2.08
275 280 2.223525 CCTCAAGTTCGTCTATCGGGAC 60.224 54.545 0.00 0.00 40.32 4.46
278 283 3.116300 CAAGTTCGTCTATCGGGACATG 58.884 50.000 0.00 0.00 40.32 3.21
279 284 2.651455 AGTTCGTCTATCGGGACATGA 58.349 47.619 0.00 0.00 40.32 3.07
281 286 3.637229 AGTTCGTCTATCGGGACATGATT 59.363 43.478 0.00 0.00 40.32 2.57
294 299 2.547211 GACATGATTGATGGAGCTTCGG 59.453 50.000 0.00 0.00 36.23 4.30
296 301 0.252761 TGATTGATGGAGCTTCGGCA 59.747 50.000 0.00 0.00 44.74 5.69
306 311 1.346068 GAGCTTCGGCATAGATTCCCT 59.654 52.381 0.00 0.00 44.74 4.20
307 312 1.346068 AGCTTCGGCATAGATTCCCTC 59.654 52.381 0.00 0.00 44.74 4.30
308 313 1.937108 GCTTCGGCATAGATTCCCTCG 60.937 57.143 0.00 0.00 41.33 4.63
314 319 1.273886 GCATAGATTCCCTCGGTCTCC 59.726 57.143 0.00 0.00 0.00 3.71
325 330 0.252057 TCGGTCTCCTTGGGATGACA 60.252 55.000 13.68 0.00 34.17 3.58
364 369 0.038251 TGTGTGCTAGCCAACGAGAG 60.038 55.000 13.29 0.00 0.00 3.20
388 393 2.600731 GTGTCAGACACTTCAGATCGG 58.399 52.381 24.23 0.00 45.27 4.18
411 416 0.802494 AATGGTTCAATGGCGACGAC 59.198 50.000 0.00 0.00 0.00 4.34
424 429 2.203640 ACGACTGTGGCTCTGGGA 60.204 61.111 0.00 0.00 0.00 4.37
427 432 2.524394 ACTGTGGCTCTGGGACGT 60.524 61.111 0.00 0.00 0.00 4.34
449 454 2.280628 GGTCCTTAGTAGCATGTGCAC 58.719 52.381 10.75 10.75 45.16 4.57
455 460 2.680312 AGTAGCATGTGCACGAAGAT 57.320 45.000 13.13 5.67 45.16 2.40
459 464 3.648339 AGCATGTGCACGAAGATTTTT 57.352 38.095 13.13 0.00 45.16 1.94
483 488 4.122776 AGCTATCATCGACATGGTCAAAC 58.877 43.478 0.00 0.00 32.09 2.93
492 497 1.133513 ACATGGTCAAACTGGCTCCAA 60.134 47.619 0.00 0.00 0.00 3.53
523 528 3.841379 GACAGTGGCACGTCAGCGA 62.841 63.158 26.29 0.00 42.00 4.93
538 543 2.508891 GCGACTCATTCTGACGGCG 61.509 63.158 4.80 4.80 32.06 6.46
542 547 2.540973 CGACTCATTCTGACGGCGATAA 60.541 50.000 16.62 1.84 31.01 1.75
546 551 1.195448 CATTCTGACGGCGATAATGGC 59.805 52.381 16.62 0.00 0.00 4.40
619 628 8.617290 TCTTACCAACCTTTAAAACAGATCTC 57.383 34.615 0.00 0.00 0.00 2.75
780 794 1.444553 GTGAGAGAAGTCGTGGCCG 60.445 63.158 0.00 0.00 0.00 6.13
878 911 2.043664 TCCTCTCCTGGCCCATAGATAG 59.956 54.545 0.00 0.00 0.00 2.08
879 912 2.043664 CCTCTCCTGGCCCATAGATAGA 59.956 54.545 0.00 0.00 0.00 1.98
880 913 3.364549 CTCTCCTGGCCCATAGATAGAG 58.635 54.545 0.00 3.62 0.00 2.43
918 951 3.119096 GCGTCCAGAAACCCTCGC 61.119 66.667 0.00 0.00 37.17 5.03
1098 1450 3.251817 CGACATCATCGCCGTAAGT 57.748 52.632 0.00 0.00 45.52 2.24
1101 1453 0.810031 ACATCATCGCCGTAAGTGCC 60.810 55.000 0.00 0.00 0.00 5.01
1141 1493 1.406887 GCCCCTCGCTTTACTTGATGA 60.407 52.381 0.00 0.00 0.00 2.92
1177 1531 0.108615 GTGTCCTGCGCAGTAGATGT 60.109 55.000 33.75 0.00 45.23 3.06
1180 1534 2.176273 CCTGCGCAGTAGATGTGGC 61.176 63.158 33.75 0.00 45.23 5.01
1181 1535 2.125147 TGCGCAGTAGATGTGGCC 60.125 61.111 5.66 0.00 39.94 5.36
1250 1605 4.559862 ACATGTAGAAAAGGAGAGTGGG 57.440 45.455 0.00 0.00 0.00 4.61
1285 1640 0.448990 TTCGTGATGCTTGATGCTGC 59.551 50.000 0.00 0.00 43.37 5.25
1357 1712 6.321181 ACCATGTTTGTTCAGTTAGTTGATGT 59.679 34.615 0.00 0.00 0.00 3.06
1450 1810 4.994907 TGTAGTACCGAATGCTATGTGT 57.005 40.909 0.00 0.00 0.00 3.72
1507 1867 0.321653 ATGTCCACTCGGAACTTGGC 60.322 55.000 0.00 0.00 45.20 4.52
1518 1878 2.671914 CGGAACTTGGCCATGTTCATTG 60.672 50.000 42.00 32.66 43.29 2.82
1597 1957 3.132646 TCTTGGCTGTTGCTTTTGTTCAT 59.867 39.130 0.00 0.00 39.59 2.57
1598 1958 2.823984 TGGCTGTTGCTTTTGTTCATG 58.176 42.857 0.00 0.00 39.59 3.07
1604 1967 7.121907 TGGCTGTTGCTTTTGTTCATGTATATA 59.878 33.333 0.00 0.00 39.59 0.86
1610 1973 7.424803 TGCTTTTGTTCATGTATATATGTGCC 58.575 34.615 9.06 0.67 0.00 5.01
1626 1989 2.694628 TGTGCCTTCTGTTCTTTTGCAT 59.305 40.909 0.00 0.00 0.00 3.96
1744 2111 1.278127 CGTTGGTGGTGGGAGATTAGT 59.722 52.381 0.00 0.00 0.00 2.24
1745 2112 2.290071 CGTTGGTGGTGGGAGATTAGTT 60.290 50.000 0.00 0.00 0.00 2.24
1746 2113 3.763057 GTTGGTGGTGGGAGATTAGTTT 58.237 45.455 0.00 0.00 0.00 2.66
1748 2115 3.761897 TGGTGGTGGGAGATTAGTTTTG 58.238 45.455 0.00 0.00 0.00 2.44
1763 2130 4.776795 AGTTTTGTCTGTTTGAACCGTT 57.223 36.364 0.00 0.00 0.00 4.44
1786 2153 3.786516 TGCTTTGGCATGACATGTATG 57.213 42.857 16.62 4.72 44.28 2.39
1793 2160 3.874400 GCATGACATGTATGCTCAGTC 57.126 47.619 22.42 1.93 45.64 3.51
1812 2179 7.425577 TCAGTCAGTTGATGTGATTTTGTAG 57.574 36.000 0.00 0.00 0.00 2.74
1818 2185 7.281999 TCAGTTGATGTGATTTTGTAGTGACAA 59.718 33.333 0.00 0.00 43.94 3.18
1826 2193 7.390162 TGTGATTTTGTAGTGACAATAGCATGA 59.610 33.333 0.00 0.00 44.96 3.07
1845 2224 5.357596 GCATGAATTTACCAAATTGCCCATT 59.642 36.000 0.00 0.00 40.97 3.16
1855 2234 1.176527 ATTGCCCATTTGGTCTCGTG 58.823 50.000 0.00 0.00 36.04 4.35
1858 2237 1.084289 GCCCATTTGGTCTCGTGTAC 58.916 55.000 0.00 0.00 36.04 2.90
1917 2297 4.142491 ACTCAGCTCTGAAATGTCTACTCG 60.142 45.833 0.93 0.00 39.39 4.18
1928 2308 6.821160 TGAAATGTCTACTCGGAATTTATGCA 59.179 34.615 0.00 0.00 0.00 3.96
1934 2314 4.946784 ACTCGGAATTTATGCACTGTTC 57.053 40.909 0.00 0.00 0.00 3.18
1935 2315 4.323417 ACTCGGAATTTATGCACTGTTCA 58.677 39.130 0.00 0.00 0.00 3.18
1943 2323 4.972514 TTATGCACTGTTCACAAACACA 57.027 36.364 0.00 0.00 40.45 3.72
1960 2340 7.850982 CACAAACACAAACTGTCTAAGTCATAC 59.149 37.037 0.00 0.00 38.56 2.39
1964 2344 8.311650 ACACAAACTGTCTAAGTCATACATTC 57.688 34.615 0.00 0.00 38.56 2.67
1965 2345 8.150945 ACACAAACTGTCTAAGTCATACATTCT 58.849 33.333 0.00 0.00 38.56 2.40
1966 2346 8.993121 CACAAACTGTCTAAGTCATACATTCTT 58.007 33.333 0.00 0.00 38.56 2.52
1981 2361 8.461222 TCATACATTCTTATTTCTTGGCTGTTG 58.539 33.333 0.00 0.00 0.00 3.33
1995 2375 7.535139 TCTTGGCTGTTGCTATTGTTAAATAC 58.465 34.615 0.00 0.00 39.59 1.89
1996 2376 7.393234 TCTTGGCTGTTGCTATTGTTAAATACT 59.607 33.333 0.00 0.00 39.59 2.12
1997 2377 7.083875 TGGCTGTTGCTATTGTTAAATACTC 57.916 36.000 0.00 0.00 39.59 2.59
1998 2378 6.183360 TGGCTGTTGCTATTGTTAAATACTCG 60.183 38.462 0.00 0.00 39.59 4.18
1999 2379 6.183360 GGCTGTTGCTATTGTTAAATACTCGT 60.183 38.462 0.00 0.00 39.59 4.18
2000 2380 7.010738 GGCTGTTGCTATTGTTAAATACTCGTA 59.989 37.037 0.00 0.00 39.59 3.43
2021 2401 2.978156 ATGCTTTCTGTTCCCCTTCA 57.022 45.000 0.00 0.00 0.00 3.02
2024 2404 3.157087 TGCTTTCTGTTCCCCTTCAATC 58.843 45.455 0.00 0.00 0.00 2.67
2030 2410 2.744202 CTGTTCCCCTTCAATCTTCACG 59.256 50.000 0.00 0.00 0.00 4.35
2093 2473 8.341173 GCAGAGCTTATATTCATGGTTATATGC 58.659 37.037 16.95 16.95 34.29 3.14
2156 2536 6.425504 CGAGGAACAGAAAAATGATAGCATC 58.574 40.000 0.00 0.00 32.35 3.91
2241 2621 5.591877 GGCATGATTGAAGGTCAGATAACTT 59.408 40.000 0.00 0.00 0.00 2.66
2520 2900 9.013229 TGCCTTATATAATGCATACTTTCTTGG 57.987 33.333 18.14 3.12 33.05 3.61
2530 2911 4.083484 GCATACTTTCTTGGTGTGTGGTAC 60.083 45.833 0.00 0.00 0.00 3.34
2587 2968 4.202050 ACTGGTTTTGAGCTTAACTGCAAG 60.202 41.667 0.00 0.00 42.29 4.01
2634 3016 2.095532 CAGTTGATGCAAGTAGCTCTGC 59.904 50.000 8.11 8.11 45.94 4.26
2756 3138 4.530094 TGCATATTGCTTGCGTAACTAC 57.470 40.909 0.75 0.00 45.31 2.73
2770 3152 7.295952 TGCGTAACTACTTACTAGTACTGTC 57.704 40.000 5.39 0.00 34.26 3.51
2782 3164 1.889829 AGTACTGTCTCTGTGCTGGAC 59.110 52.381 0.00 0.00 28.93 4.02
2793 3175 1.824852 TGTGCTGGACGACATAGTGAT 59.175 47.619 0.00 0.00 0.00 3.06
2857 3239 8.706322 AAGTAAAGGTTCTTGATATTTGTGGT 57.294 30.769 0.00 0.00 0.00 4.16
2880 3262 6.209361 GTTCCCTCAGTTTGTTGATTTCTTC 58.791 40.000 0.00 0.00 0.00 2.87
2881 3263 5.445069 TCCCTCAGTTTGTTGATTTCTTCA 58.555 37.500 0.00 0.00 0.00 3.02
2882 3264 6.070656 TCCCTCAGTTTGTTGATTTCTTCAT 58.929 36.000 0.00 0.00 33.34 2.57
2883 3265 6.207417 TCCCTCAGTTTGTTGATTTCTTCATC 59.793 38.462 0.00 0.00 33.34 2.92
2892 3274 5.713389 TGTTGATTTCTTCATCATCAGGCTT 59.287 36.000 0.00 0.00 33.07 4.35
2894 3276 4.643334 TGATTTCTTCATCATCAGGCTTGG 59.357 41.667 0.00 0.00 0.00 3.61
2927 3309 3.129287 CCTACATTTGCACCATCCAAGAC 59.871 47.826 0.00 0.00 0.00 3.01
2930 3312 3.579586 ACATTTGCACCATCCAAGACATT 59.420 39.130 0.00 0.00 0.00 2.71
2969 3351 2.141517 CCTCTCATTAATCTGGCAGCG 58.858 52.381 10.34 0.00 0.00 5.18
2972 3355 2.168313 TCTCATTAATCTGGCAGCGTCA 59.832 45.455 10.34 0.00 0.00 4.35
3000 3383 6.671614 ATACAATCGATTTTTCTGCGGTAA 57.328 33.333 8.21 0.00 0.00 2.85
3086 3469 7.325599 CAGCAAATCTGTTTAACTGCTTAAC 57.674 36.000 6.13 0.00 38.02 2.01
3087 3470 7.141363 CAGCAAATCTGTTTAACTGCTTAACT 58.859 34.615 6.13 0.00 38.02 2.24
3088 3471 7.113965 CAGCAAATCTGTTTAACTGCTTAACTG 59.886 37.037 6.13 6.32 38.02 3.16
3089 3472 7.013274 AGCAAATCTGTTTAACTGCTTAACTGA 59.987 33.333 3.45 0.00 0.00 3.41
3090 3473 7.647715 GCAAATCTGTTTAACTGCTTAACTGAA 59.352 33.333 0.00 0.00 0.00 3.02
3091 3474 9.683069 CAAATCTGTTTAACTGCTTAACTGAAT 57.317 29.630 0.00 0.00 0.00 2.57
3098 3481 8.840867 GTTTAACTGCTTAACTGAATTCATTCG 58.159 33.333 8.96 0.00 39.62 3.34
3122 3505 6.346279 CGACTGTTGTGTCACGTGTTTTATAT 60.346 38.462 16.51 0.00 36.82 0.86
3161 3544 8.331022 CACACCTATTCTTGTCGATTAATTCTG 58.669 37.037 0.00 0.00 0.00 3.02
3240 3623 6.606796 TCCATTTCAAGATTTGGCTATGCTTA 59.393 34.615 0.00 0.00 0.00 3.09
3252 3635 4.670227 GCTATGCTTAAGCCTAATTCCG 57.330 45.455 24.30 8.05 41.18 4.30
3342 3731 7.985476 ACGTGGGATACAATTAAAATTCAGAG 58.015 34.615 0.00 0.00 39.74 3.35
3383 3773 7.739498 AAGTTTATGGGGTAATATAAGTGCG 57.261 36.000 0.00 0.00 0.00 5.34
3504 3894 3.306472 TGCCGCCTTTATAAATTCCCT 57.694 42.857 0.00 0.00 0.00 4.20
3529 3919 8.491045 TCTTTTAATTGATCTTGTCCCCTTTT 57.509 30.769 0.00 0.00 0.00 2.27
3664 4169 5.063438 TGCGATTCACAGTAGAAAACTATGC 59.937 40.000 0.00 0.00 35.76 3.14
3701 4206 3.133691 TGAAGTGACAACAGCAAGCTAG 58.866 45.455 0.00 0.00 0.00 3.42
3736 4241 5.291614 TGCTGAGTTTTCAAAATCAAGCAAC 59.708 36.000 16.96 3.62 41.68 4.17
3737 4242 5.521372 GCTGAGTTTTCAAAATCAAGCAACT 59.479 36.000 14.03 0.00 41.68 3.16
3738 4243 6.509039 GCTGAGTTTTCAAAATCAAGCAACTG 60.509 38.462 14.03 1.37 41.68 3.16
3739 4244 6.397272 TGAGTTTTCAAAATCAAGCAACTGT 58.603 32.000 0.05 0.00 39.68 3.55
3740 4245 7.542890 TGAGTTTTCAAAATCAAGCAACTGTA 58.457 30.769 0.05 0.00 39.68 2.74
3741 4246 8.031864 TGAGTTTTCAAAATCAAGCAACTGTAA 58.968 29.630 0.05 0.00 39.68 2.41
3742 4247 8.770438 AGTTTTCAAAATCAAGCAACTGTAAA 57.230 26.923 0.00 0.00 0.00 2.01
3743 4248 9.213799 AGTTTTCAAAATCAAGCAACTGTAAAA 57.786 25.926 0.00 0.00 0.00 1.52
3744 4249 9.818796 GTTTTCAAAATCAAGCAACTGTAAAAA 57.181 25.926 0.00 0.00 0.00 1.94
3776 4281 9.975218 ACTGATAACCCTGTTCATAAATTACTT 57.025 29.630 0.00 0.00 0.00 2.24
3778 4283 9.967451 TGATAACCCTGTTCATAAATTACTTGA 57.033 29.630 0.00 0.00 0.00 3.02
3783 4288 9.927668 ACCCTGTTCATAAATTACTTGATTTTG 57.072 29.630 0.00 0.00 31.96 2.44
3794 4299 9.965748 AAATTACTTGATTTTGAAAAACGTGTG 57.034 25.926 0.00 0.00 0.00 3.82
3795 4300 5.448926 ACTTGATTTTGAAAAACGTGTGC 57.551 34.783 0.00 0.00 0.00 4.57
3796 4301 4.926238 ACTTGATTTTGAAAAACGTGTGCA 59.074 33.333 0.00 0.00 0.00 4.57
3797 4302 4.831741 TGATTTTGAAAAACGTGTGCAC 57.168 36.364 10.75 10.75 0.00 4.57
3798 4303 4.489810 TGATTTTGAAAAACGTGTGCACT 58.510 34.783 19.41 0.00 0.00 4.40
3799 4304 4.926238 TGATTTTGAAAAACGTGTGCACTT 59.074 33.333 19.41 1.94 0.00 3.16
3800 4305 6.093404 TGATTTTGAAAAACGTGTGCACTTA 58.907 32.000 19.41 0.00 0.00 2.24
3801 4306 6.754209 TGATTTTGAAAAACGTGTGCACTTAT 59.246 30.769 19.41 0.00 0.00 1.73
3802 4307 6.952935 TTTTGAAAAACGTGTGCACTTATT 57.047 29.167 19.41 6.31 0.00 1.40
3803 4308 5.940603 TTGAAAAACGTGTGCACTTATTG 57.059 34.783 19.41 5.66 0.00 1.90
3820 4325 6.375455 CACTTATTGCTTGATAACCCTGTTCT 59.625 38.462 0.00 0.00 0.00 3.01
3958 4463 7.888021 TGAAATAGGATGTGTGTTTGGTTCTAT 59.112 33.333 0.00 0.00 0.00 1.98
3971 4476 4.789012 TGGTTCTATCGTTCTACCGTTT 57.211 40.909 0.00 0.00 0.00 3.60
3982 4487 4.503734 CGTTCTACCGTTTGTTCTGTGTTA 59.496 41.667 0.00 0.00 0.00 2.41
3983 4488 5.555069 CGTTCTACCGTTTGTTCTGTGTTAC 60.555 44.000 0.00 0.00 0.00 2.50
3984 4489 5.266733 TCTACCGTTTGTTCTGTGTTACT 57.733 39.130 0.00 0.00 0.00 2.24
3985 4490 5.663456 TCTACCGTTTGTTCTGTGTTACTT 58.337 37.500 0.00 0.00 0.00 2.24
4045 4554 1.555533 TGATACCATGCCACCGTGTAA 59.444 47.619 0.00 0.00 0.00 2.41
4046 4555 2.171659 TGATACCATGCCACCGTGTAAT 59.828 45.455 0.00 0.00 0.00 1.89
4047 4556 2.319136 TACCATGCCACCGTGTAATC 57.681 50.000 0.00 0.00 0.00 1.75
4048 4557 0.618458 ACCATGCCACCGTGTAATCT 59.382 50.000 0.00 0.00 0.00 2.40
4078 4587 8.499162 GGATAAATCAAATCGTGATGGAAGTAG 58.501 37.037 0.00 0.00 46.80 2.57
4079 4588 8.964476 ATAAATCAAATCGTGATGGAAGTAGT 57.036 30.769 0.00 0.00 46.80 2.73
4095 4604 5.642491 GGAAGTAGTACCATTGTCTCAAACC 59.358 44.000 0.00 0.00 0.00 3.27
4123 4632 8.673711 GTGCTGAATACACCAATAAATGAACTA 58.326 33.333 0.00 0.00 31.67 2.24
4212 4728 3.933155 TCGATCGAACGGTCTAAGTAC 57.067 47.619 16.99 0.00 0.00 2.73
4215 4731 3.003068 CGATCGAACGGTCTAAGTACCAT 59.997 47.826 10.26 0.00 39.71 3.55
4216 4732 3.770263 TCGAACGGTCTAAGTACCATG 57.230 47.619 0.00 0.00 39.71 3.66
4217 4733 2.159338 TCGAACGGTCTAAGTACCATGC 60.159 50.000 0.00 0.00 39.71 4.06
4218 4734 2.547826 GAACGGTCTAAGTACCATGCC 58.452 52.381 0.00 0.00 39.71 4.40
4219 4735 1.563924 ACGGTCTAAGTACCATGCCA 58.436 50.000 0.00 0.00 39.71 4.92
4220 4736 2.116238 ACGGTCTAAGTACCATGCCAT 58.884 47.619 0.00 0.00 39.71 4.40
4221 4737 2.504175 ACGGTCTAAGTACCATGCCATT 59.496 45.455 0.00 0.00 39.71 3.16
4222 4738 2.872245 CGGTCTAAGTACCATGCCATTG 59.128 50.000 0.00 0.00 39.71 2.82
4223 4739 3.431626 CGGTCTAAGTACCATGCCATTGA 60.432 47.826 0.00 0.00 39.71 2.57
4224 4740 4.523083 GGTCTAAGTACCATGCCATTGAA 58.477 43.478 0.00 0.00 39.50 2.69
4225 4741 4.335594 GGTCTAAGTACCATGCCATTGAAC 59.664 45.833 0.00 0.00 39.50 3.18
4226 4742 4.941263 GTCTAAGTACCATGCCATTGAACA 59.059 41.667 0.00 0.00 0.00 3.18
4227 4743 5.590259 GTCTAAGTACCATGCCATTGAACAT 59.410 40.000 0.00 0.00 0.00 2.71
4228 4744 4.989279 AAGTACCATGCCATTGAACATC 57.011 40.909 0.00 0.00 0.00 3.06
4229 4745 3.966979 AGTACCATGCCATTGAACATCA 58.033 40.909 0.00 0.00 0.00 3.07
4230 4746 4.539726 AGTACCATGCCATTGAACATCAT 58.460 39.130 0.00 0.00 0.00 2.45
4231 4747 4.581824 AGTACCATGCCATTGAACATCATC 59.418 41.667 0.00 0.00 0.00 2.92
4232 4748 2.696707 ACCATGCCATTGAACATCATCC 59.303 45.455 0.00 0.00 0.00 3.51
4233 4749 2.963101 CCATGCCATTGAACATCATCCT 59.037 45.455 0.00 0.00 0.00 3.24
4234 4750 3.005472 CCATGCCATTGAACATCATCCTC 59.995 47.826 0.00 0.00 0.00 3.71
4235 4751 3.657398 TGCCATTGAACATCATCCTCT 57.343 42.857 0.00 0.00 0.00 3.69
4236 4752 3.284617 TGCCATTGAACATCATCCTCTG 58.715 45.455 0.00 0.00 0.00 3.35
4237 4753 3.054213 TGCCATTGAACATCATCCTCTGA 60.054 43.478 0.00 0.00 38.53 3.27
4238 4754 3.949754 GCCATTGAACATCATCCTCTGAA 59.050 43.478 0.00 0.00 37.44 3.02
4239 4755 4.201990 GCCATTGAACATCATCCTCTGAAC 60.202 45.833 0.00 0.00 37.44 3.18
4240 4756 4.034858 CCATTGAACATCATCCTCTGAACG 59.965 45.833 0.00 0.00 37.44 3.95
4241 4757 3.251479 TGAACATCATCCTCTGAACGG 57.749 47.619 0.00 0.00 37.44 4.44
4242 4758 2.567169 TGAACATCATCCTCTGAACGGT 59.433 45.455 0.00 0.00 37.44 4.83
4243 4759 2.969628 ACATCATCCTCTGAACGGTC 57.030 50.000 0.00 0.00 37.44 4.79
4244 4760 2.461695 ACATCATCCTCTGAACGGTCT 58.538 47.619 0.33 0.00 37.44 3.85
4245 4761 3.632333 ACATCATCCTCTGAACGGTCTA 58.368 45.455 0.33 0.00 37.44 2.59
4246 4762 4.023980 ACATCATCCTCTGAACGGTCTAA 58.976 43.478 0.33 0.00 37.44 2.10
4247 4763 4.098654 ACATCATCCTCTGAACGGTCTAAG 59.901 45.833 0.33 0.00 37.44 2.18
4248 4764 3.698289 TCATCCTCTGAACGGTCTAAGT 58.302 45.455 0.33 0.00 0.00 2.24
4249 4765 4.851843 TCATCCTCTGAACGGTCTAAGTA 58.148 43.478 0.33 0.00 0.00 2.24
4250 4766 4.639310 TCATCCTCTGAACGGTCTAAGTAC 59.361 45.833 0.33 0.00 0.00 2.73
4251 4767 3.350833 TCCTCTGAACGGTCTAAGTACC 58.649 50.000 0.33 0.00 36.08 3.34
4252 4768 3.087031 CCTCTGAACGGTCTAAGTACCA 58.913 50.000 0.33 0.00 39.71 3.25
4260 4776 7.388437 TGAACGGTCTAAGTACCAAACAATAT 58.612 34.615 0.33 0.00 39.71 1.28
4262 4778 6.110707 ACGGTCTAAGTACCAAACAATATGG 58.889 40.000 0.00 0.00 43.84 2.74
4271 4787 5.480642 ACCAAACAATATGGCATTGAACA 57.519 34.783 4.78 0.00 41.89 3.18
4272 4788 6.052405 ACCAAACAATATGGCATTGAACAT 57.948 33.333 4.78 0.00 41.89 2.71
4280 4796 3.657398 TGGCATTGAACATCATCCTCT 57.343 42.857 0.00 0.00 0.00 3.69
4298 4814 1.140452 TCTGAGCTTGGATGATCCTGC 59.860 52.381 13.44 15.97 37.46 4.85
4353 4869 2.132352 GCCCTGGTAGTACCCGGAG 61.132 68.421 26.80 18.42 44.49 4.63
4413 4929 3.519913 ACCTCACCTTGTATTCCTCCTTC 59.480 47.826 0.00 0.00 0.00 3.46
4535 5051 1.218763 CAGAGCCATGAAGAGCATCG 58.781 55.000 0.00 0.00 42.67 3.84
4540 5056 1.745141 GCCATGAAGAGCATCGGAACT 60.745 52.381 0.00 0.00 42.67 3.01
4638 5158 0.179215 CAGTTTTCAGCATCGCCGAC 60.179 55.000 0.00 0.00 0.00 4.79
4679 5207 2.456119 CGAGAACCTGTGGCGCATC 61.456 63.158 10.83 1.19 0.00 3.91
4690 5218 4.456911 CCTGTGGCGCATCAAAATAGATAT 59.543 41.667 10.83 0.00 0.00 1.63
4691 5219 5.643348 CCTGTGGCGCATCAAAATAGATATA 59.357 40.000 10.83 0.00 0.00 0.86
4695 5228 7.095229 TGTGGCGCATCAAAATAGATATAGTTC 60.095 37.037 10.83 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.989947 ATAACACTCCCTTTCTACTTCCATA 57.010 36.000 0.00 0.00 0.00 2.74
1 2 6.893020 ATAACACTCCCTTTCTACTTCCAT 57.107 37.500 0.00 0.00 0.00 3.41
2 3 6.697641 AATAACACTCCCTTTCTACTTCCA 57.302 37.500 0.00 0.00 0.00 3.53
3 4 7.125356 TCCTAATAACACTCCCTTTCTACTTCC 59.875 40.741 0.00 0.00 0.00 3.46
4 5 8.075761 TCCTAATAACACTCCCTTTCTACTTC 57.924 38.462 0.00 0.00 0.00 3.01
13 14 5.046520 GCCGATATTCCTAATAACACTCCCT 60.047 44.000 0.00 0.00 0.00 4.20
28 29 3.393089 AGGACATGAGTGCCGATATTC 57.607 47.619 0.00 0.00 36.65 1.75
33 35 0.678684 TCGTAGGACATGAGTGCCGA 60.679 55.000 0.00 0.00 36.65 5.54
35 37 0.818296 AGTCGTAGGACATGAGTGCC 59.182 55.000 17.27 0.00 45.92 5.01
41 43 0.802222 CGCCACAGTCGTAGGACATG 60.802 60.000 17.27 13.79 45.92 3.21
49 51 1.174783 ATCTTAGACGCCACAGTCGT 58.825 50.000 0.00 0.00 45.26 4.34
50 52 2.355132 AGTATCTTAGACGCCACAGTCG 59.645 50.000 0.00 0.00 45.26 4.18
51 53 3.954999 GAGTATCTTAGACGCCACAGTC 58.045 50.000 0.00 0.00 41.23 3.51
79 84 2.620112 GCTCGCCAGCAAAGCTTGA 61.620 57.895 0.00 0.00 46.06 3.02
89 94 4.899239 GGATCCACGGCTCGCCAG 62.899 72.222 6.95 3.70 35.37 4.85
108 113 0.337773 AGCAGTGGGGAGATGAGAGA 59.662 55.000 0.00 0.00 0.00 3.10
112 117 0.979709 CCTGAGCAGTGGGGAGATGA 60.980 60.000 0.00 0.00 0.00 2.92
118 123 3.307445 CTCTCCTGAGCAGTGGGG 58.693 66.667 0.00 0.00 33.12 4.96
132 137 0.392336 GAGGCATCAGGATTCGCTCT 59.608 55.000 0.00 0.00 0.00 4.09
136 141 1.958205 GCCGAGGCATCAGGATTCG 60.958 63.158 9.58 0.00 41.49 3.34
138 143 0.179034 GAAGCCGAGGCATCAGGATT 60.179 55.000 17.18 11.38 44.88 3.01
142 147 2.496341 TCGAAGCCGAGGCATCAG 59.504 61.111 17.18 10.19 44.88 2.90
181 186 6.457799 GCCGAAACACTACTCAGAAAGAAAAA 60.458 38.462 0.00 0.00 0.00 1.94
183 188 4.510340 GCCGAAACACTACTCAGAAAGAAA 59.490 41.667 0.00 0.00 0.00 2.52
187 192 3.069016 TCTGCCGAAACACTACTCAGAAA 59.931 43.478 0.00 0.00 0.00 2.52
189 194 2.235891 TCTGCCGAAACACTACTCAGA 58.764 47.619 0.00 0.00 0.00 3.27
190 195 2.724977 TCTGCCGAAACACTACTCAG 57.275 50.000 0.00 0.00 0.00 3.35
191 196 2.560981 TCATCTGCCGAAACACTACTCA 59.439 45.455 0.00 0.00 0.00 3.41
193 198 3.525537 CATCATCTGCCGAAACACTACT 58.474 45.455 0.00 0.00 0.00 2.57
194 199 2.609459 CCATCATCTGCCGAAACACTAC 59.391 50.000 0.00 0.00 0.00 2.73
195 200 2.905075 CCATCATCTGCCGAAACACTA 58.095 47.619 0.00 0.00 0.00 2.74
196 201 1.742761 CCATCATCTGCCGAAACACT 58.257 50.000 0.00 0.00 0.00 3.55
197 202 0.099436 GCCATCATCTGCCGAAACAC 59.901 55.000 0.00 0.00 0.00 3.32
205 210 5.008019 TCGAAAATAAAGAGCCATCATCTGC 59.992 40.000 0.00 0.00 0.00 4.26
208 213 6.610741 ACTCGAAAATAAAGAGCCATCATC 57.389 37.500 0.00 0.00 35.56 2.92
212 217 5.010282 ACCAACTCGAAAATAAAGAGCCAT 58.990 37.500 0.00 0.00 35.56 4.40
213 218 4.394729 ACCAACTCGAAAATAAAGAGCCA 58.605 39.130 0.00 0.00 35.56 4.75
231 236 4.843728 AGGATCGAAGCATAAAAGACCAA 58.156 39.130 0.00 0.00 0.00 3.67
241 246 2.114616 ACTTGAGGAGGATCGAAGCAT 58.885 47.619 0.00 0.00 34.37 3.79
244 249 2.164624 ACGAACTTGAGGAGGATCGAAG 59.835 50.000 0.00 0.00 39.64 3.79
246 251 1.743958 GACGAACTTGAGGAGGATCGA 59.256 52.381 9.42 0.00 39.64 3.59
247 252 1.746220 AGACGAACTTGAGGAGGATCG 59.254 52.381 0.00 0.00 41.63 3.69
254 259 2.022195 TCCCGATAGACGAACTTGAGG 58.978 52.381 0.00 0.00 45.77 3.86
257 262 2.933495 TGTCCCGATAGACGAACTTG 57.067 50.000 0.00 0.00 45.77 3.16
258 263 3.021695 TCATGTCCCGATAGACGAACTT 58.978 45.455 0.00 0.00 45.77 2.66
267 272 3.306989 GCTCCATCAATCATGTCCCGATA 60.307 47.826 0.00 0.00 0.00 2.92
270 275 1.202734 AGCTCCATCAATCATGTCCCG 60.203 52.381 0.00 0.00 0.00 5.14
275 280 1.266175 GCCGAAGCTCCATCAATCATG 59.734 52.381 0.00 0.00 35.50 3.07
278 283 1.602311 ATGCCGAAGCTCCATCAATC 58.398 50.000 0.00 0.00 40.80 2.67
279 284 2.369860 TCTATGCCGAAGCTCCATCAAT 59.630 45.455 0.00 0.00 40.80 2.57
281 286 1.413118 TCTATGCCGAAGCTCCATCA 58.587 50.000 0.00 0.00 40.80 3.07
294 299 1.273886 GGAGACCGAGGGAATCTATGC 59.726 57.143 0.00 0.00 0.00 3.14
296 301 3.235200 CAAGGAGACCGAGGGAATCTAT 58.765 50.000 0.00 0.00 0.00 1.98
306 311 0.252057 TGTCATCCCAAGGAGACCGA 60.252 55.000 9.35 0.00 34.05 4.69
307 312 0.613260 TTGTCATCCCAAGGAGACCG 59.387 55.000 9.35 0.00 34.05 4.79
308 313 2.409948 CTTGTCATCCCAAGGAGACC 57.590 55.000 9.35 0.00 38.51 3.85
314 319 4.559862 ACTCTAACCTTGTCATCCCAAG 57.440 45.455 0.00 0.00 41.21 3.61
325 330 3.008049 ACATGGCGAGAAACTCTAACCTT 59.992 43.478 0.00 0.00 0.00 3.50
333 338 0.250467 AGCACACATGGCGAGAAACT 60.250 50.000 0.00 0.00 36.08 2.66
334 339 1.394917 CTAGCACACATGGCGAGAAAC 59.605 52.381 0.00 0.00 36.27 2.78
370 375 3.246619 GAACCGATCTGAAGTGTCTGAC 58.753 50.000 0.00 0.00 34.88 3.51
385 390 1.543802 GCCATTGAACCATTGAACCGA 59.456 47.619 0.00 0.00 0.00 4.69
388 393 2.595386 GTCGCCATTGAACCATTGAAC 58.405 47.619 0.00 0.00 0.00 3.18
411 416 1.669115 CAACGTCCCAGAGCCACAG 60.669 63.158 0.00 0.00 0.00 3.66
424 429 2.565834 ACATGCTACTAAGGACCAACGT 59.434 45.455 0.00 0.00 0.00 3.99
427 432 2.304470 TGCACATGCTACTAAGGACCAA 59.696 45.455 5.31 0.00 42.66 3.67
438 443 4.764679 AAAAATCTTCGTGCACATGCTA 57.235 36.364 18.64 0.00 42.66 3.49
459 464 5.529581 TTGACCATGTCGATGATAGCTAA 57.470 39.130 0.00 0.00 34.95 3.09
460 465 5.069119 AGTTTGACCATGTCGATGATAGCTA 59.931 40.000 0.00 0.00 34.95 3.32
461 466 4.122776 GTTTGACCATGTCGATGATAGCT 58.877 43.478 0.00 0.00 34.95 3.32
475 480 2.290896 CCTATTGGAGCCAGTTTGACCA 60.291 50.000 0.00 0.00 34.57 4.02
492 497 0.537188 CACTGTCGTTGCTCCCCTAT 59.463 55.000 0.00 0.00 0.00 2.57
514 519 0.881796 TCAGAATGAGTCGCTGACGT 59.118 50.000 6.18 0.00 42.56 4.34
546 551 0.176219 ATTGCATCACCGCCAAATGG 59.824 50.000 0.00 0.00 38.53 3.16
548 553 2.766345 AAATTGCATCACCGCCAAAT 57.234 40.000 0.00 0.00 0.00 2.32
551 556 3.883830 ATAAAAATTGCATCACCGCCA 57.116 38.095 0.00 0.00 0.00 5.69
641 650 9.942850 AATGTTGGTAATTTCCCTCAAAATAAG 57.057 29.630 0.00 0.00 0.00 1.73
717 731 5.339008 TTTAAGCAGATCGTATGGTGTCT 57.661 39.130 0.00 0.00 0.00 3.41
756 770 1.444553 CGACTTCTCTCACCCACGC 60.445 63.158 0.00 0.00 0.00 5.34
760 774 1.079750 GCCACGACTTCTCTCACCC 60.080 63.158 0.00 0.00 0.00 4.61
763 777 2.962569 CGGCCACGACTTCTCTCA 59.037 61.111 2.24 0.00 44.60 3.27
780 794 2.175811 CGTTTGCTTAGCCCACGC 59.824 61.111 11.37 0.00 0.00 5.34
841 855 4.323409 GGAGAGGAGAAAGAGAATGCAACT 60.323 45.833 0.00 0.00 0.00 3.16
878 911 0.382515 AGGAAGCAGCGTCGTATCTC 59.617 55.000 1.35 0.00 0.00 2.75
879 912 0.818296 AAGGAAGCAGCGTCGTATCT 59.182 50.000 3.88 0.00 0.00 1.98
880 913 1.201343 GAAGGAAGCAGCGTCGTATC 58.799 55.000 3.88 1.78 0.00 2.24
1101 1453 1.898190 TAAGGGGAGAGAGGTGGGGG 61.898 65.000 0.00 0.00 0.00 5.40
1137 1489 2.223203 CCACAGCAGCGAAAGATTCATC 60.223 50.000 0.00 0.00 0.00 2.92
1141 1493 0.877071 CACCACAGCAGCGAAAGATT 59.123 50.000 0.00 0.00 0.00 2.40
1169 1523 6.506538 AGAATCAATTAGGCCACATCTACT 57.493 37.500 5.01 0.00 0.00 2.57
1177 1531 4.655963 GCATCCTAGAATCAATTAGGCCA 58.344 43.478 5.01 0.00 37.05 5.36
1180 1534 3.369147 CGCGCATCCTAGAATCAATTAGG 59.631 47.826 8.75 0.00 38.22 2.69
1181 1535 3.181526 GCGCGCATCCTAGAATCAATTAG 60.182 47.826 29.10 0.00 0.00 1.73
1210 1565 4.514545 TGTATTTTCGTGCTTCGCATAG 57.485 40.909 0.00 0.00 41.91 2.23
1230 1585 4.508662 GACCCACTCTCCTTTTCTACATG 58.491 47.826 0.00 0.00 0.00 3.21
1250 1605 2.902484 CACGAAGCTTTGCAATAACGAC 59.098 45.455 13.93 0.00 0.00 4.34
1285 1640 3.330720 GGTCTCCCACCACCAGGG 61.331 72.222 0.00 0.00 45.98 4.45
1302 1657 1.209127 GATTCAACAACCACGGCCG 59.791 57.895 26.86 26.86 0.00 6.13
1303 1658 1.209127 CGATTCAACAACCACGGCC 59.791 57.895 0.00 0.00 0.00 6.13
1310 1665 0.039527 GGCACCACCGATTCAACAAC 60.040 55.000 0.00 0.00 0.00 3.32
1357 1712 6.268158 TCCATGCTACTACCGGTAAATAATGA 59.732 38.462 16.65 3.31 0.00 2.57
1368 1723 4.330944 TGGTAAATCCATGCTACTACCG 57.669 45.455 0.00 0.00 41.93 4.02
1479 1839 4.819105 TCCGAGTGGACATTTCATAGTT 57.181 40.909 0.00 0.00 40.17 2.24
1487 1847 1.882352 GCCAAGTTCCGAGTGGACATT 60.882 52.381 0.00 0.00 46.45 2.71
1507 1867 6.603201 AGATAACAGTAACCCAATGAACATGG 59.397 38.462 0.00 0.00 37.71 3.66
1518 1878 9.095065 CACTACATAAACAGATAACAGTAACCC 57.905 37.037 0.00 0.00 0.00 4.11
1597 1957 8.892723 CAAAAGAACAGAAGGCACATATATACA 58.107 33.333 0.00 0.00 0.00 2.29
1598 1958 7.857885 GCAAAAGAACAGAAGGCACATATATAC 59.142 37.037 0.00 0.00 0.00 1.47
1604 1967 2.694628 TGCAAAAGAACAGAAGGCACAT 59.305 40.909 0.00 0.00 0.00 3.21
1610 1973 5.806502 TGTGAACAATGCAAAAGAACAGAAG 59.193 36.000 0.00 0.00 0.00 2.85
1626 1989 7.004555 ACATAACAGGATAGTCTGTGAACAA 57.995 36.000 0.00 0.00 46.17 2.83
1721 2088 1.838073 ATCTCCCACCACCAACGGTC 61.838 60.000 0.00 0.00 37.07 4.79
1744 2111 3.256136 ACCAACGGTTCAAACAGACAAAA 59.744 39.130 0.00 0.00 27.29 2.44
1745 2112 2.820787 ACCAACGGTTCAAACAGACAAA 59.179 40.909 0.00 0.00 27.29 2.83
1746 2113 2.162608 CACCAACGGTTCAAACAGACAA 59.837 45.455 0.00 0.00 31.02 3.18
1748 2115 1.533129 GCACCAACGGTTCAAACAGAC 60.533 52.381 0.00 0.00 31.02 3.51
1775 2142 4.750021 ACTGACTGAGCATACATGTCAT 57.250 40.909 0.00 0.00 37.10 3.06
1786 2153 5.152097 CAAAATCACATCAACTGACTGAGC 58.848 41.667 0.00 0.00 0.00 4.26
1793 2160 6.958255 TGTCACTACAAAATCACATCAACTG 58.042 36.000 0.00 0.00 30.91 3.16
1812 2179 8.931385 ATTTGGTAAATTCATGCTATTGTCAC 57.069 30.769 0.00 0.00 0.00 3.67
1818 2185 6.126825 TGGGCAATTTGGTAAATTCATGCTAT 60.127 34.615 0.00 0.00 38.97 2.97
1845 2224 4.077108 AGACATGTAGTACACGAGACCAA 58.923 43.478 4.80 0.00 0.00 3.67
1878 2257 4.472833 AGCTGAGTTAACCATCTTCCATCT 59.527 41.667 0.88 0.00 0.00 2.90
1879 2258 4.775236 AGCTGAGTTAACCATCTTCCATC 58.225 43.478 0.88 0.00 0.00 3.51
1880 2259 4.472833 AGAGCTGAGTTAACCATCTTCCAT 59.527 41.667 0.88 0.00 0.00 3.41
1882 2261 4.081420 TCAGAGCTGAGTTAACCATCTTCC 60.081 45.833 0.88 0.00 34.14 3.46
1883 2262 5.078411 TCAGAGCTGAGTTAACCATCTTC 57.922 43.478 0.88 0.00 34.14 2.87
1884 2263 5.489792 TTCAGAGCTGAGTTAACCATCTT 57.510 39.130 0.88 0.00 41.13 2.40
1897 2276 3.129462 TCCGAGTAGACATTTCAGAGCTG 59.871 47.826 0.00 0.00 0.00 4.24
1917 2297 5.982516 TGTTTGTGAACAGTGCATAAATTCC 59.017 36.000 6.72 0.00 40.71 3.01
1928 2308 4.518970 AGACAGTTTGTGTTTGTGAACAGT 59.481 37.500 0.00 0.00 45.86 3.55
1934 2314 6.176975 TGACTTAGACAGTTTGTGTTTGTG 57.823 37.500 0.00 0.00 40.56 3.33
1935 2315 7.551262 TGTATGACTTAGACAGTTTGTGTTTGT 59.449 33.333 0.00 0.00 40.56 2.83
1960 2340 5.717119 AGCAACAGCCAAGAAATAAGAATG 58.283 37.500 0.00 0.00 0.00 2.67
1964 2344 6.624423 ACAATAGCAACAGCCAAGAAATAAG 58.376 36.000 0.00 0.00 0.00 1.73
1965 2345 6.588719 ACAATAGCAACAGCCAAGAAATAA 57.411 33.333 0.00 0.00 0.00 1.40
1966 2346 6.588719 AACAATAGCAACAGCCAAGAAATA 57.411 33.333 0.00 0.00 0.00 1.40
1967 2347 5.473066 AACAATAGCAACAGCCAAGAAAT 57.527 34.783 0.00 0.00 0.00 2.17
1968 2348 4.935352 AACAATAGCAACAGCCAAGAAA 57.065 36.364 0.00 0.00 0.00 2.52
1969 2349 6.398234 TTTAACAATAGCAACAGCCAAGAA 57.602 33.333 0.00 0.00 0.00 2.52
1970 2350 6.588719 ATTTAACAATAGCAACAGCCAAGA 57.411 33.333 0.00 0.00 0.00 3.02
1971 2351 7.538575 AGTATTTAACAATAGCAACAGCCAAG 58.461 34.615 0.00 0.00 0.00 3.61
1975 2355 6.772078 ACGAGTATTTAACAATAGCAACAGC 58.228 36.000 0.00 0.00 0.00 4.40
1995 2375 4.058817 GGGGAACAGAAAGCATATACGAG 58.941 47.826 0.00 0.00 0.00 4.18
1996 2376 3.709653 AGGGGAACAGAAAGCATATACGA 59.290 43.478 0.00 0.00 0.00 3.43
1997 2377 4.073293 AGGGGAACAGAAAGCATATACG 57.927 45.455 0.00 0.00 0.00 3.06
1998 2378 5.437060 TGAAGGGGAACAGAAAGCATATAC 58.563 41.667 0.00 0.00 0.00 1.47
1999 2379 5.708736 TGAAGGGGAACAGAAAGCATATA 57.291 39.130 0.00 0.00 0.00 0.86
2000 2380 4.591321 TGAAGGGGAACAGAAAGCATAT 57.409 40.909 0.00 0.00 0.00 1.78
2048 2428 6.089249 TCTGCTTGCTCATCGAAGATATTA 57.911 37.500 0.00 0.00 45.12 0.98
2093 2473 3.133721 CCTCTCTTTCACATCCCTAGGTG 59.866 52.174 8.29 2.62 38.76 4.00
2156 2536 1.698532 AGAGCCCAAGATAGCCTCATG 59.301 52.381 0.00 0.00 0.00 3.07
2520 2900 2.287915 CAGCAGAAACAGTACCACACAC 59.712 50.000 0.00 0.00 0.00 3.82
2530 2911 3.486383 TCCCTTTTACCAGCAGAAACAG 58.514 45.455 0.00 0.00 0.00 3.16
2587 2968 9.079833 GCATGTATGACATATCAAATATTTGGC 57.920 33.333 24.40 12.63 36.53 4.52
2634 3016 5.749596 TGAGTTACCACAAGTTCACAATG 57.250 39.130 0.00 0.00 0.00 2.82
2687 3069 4.734695 GCAAACCAGCATAGAAATAGCACC 60.735 45.833 0.00 0.00 0.00 5.01
2756 3138 5.163703 CCAGCACAGAGACAGTACTAGTAAG 60.164 48.000 3.61 3.16 0.00 2.34
2770 3152 1.474478 ACTATGTCGTCCAGCACAGAG 59.526 52.381 0.00 0.00 37.77 3.35
2857 3239 5.890985 TGAAGAAATCAACAAACTGAGGGAA 59.109 36.000 0.00 0.00 34.30 3.97
2880 3262 8.361592 GAAAATTATTTCCAAGCCTGATGATG 57.638 34.615 0.00 0.00 39.23 3.07
2894 3276 8.770438 TGGTGCAAATGTAGGAAAATTATTTC 57.230 30.769 0.00 0.00 43.46 2.17
2927 3309 3.954258 GGAGGGTGATTTAAGGGACAATG 59.046 47.826 0.00 0.00 0.00 2.82
2930 3312 1.920351 GGGAGGGTGATTTAAGGGACA 59.080 52.381 0.00 0.00 0.00 4.02
2969 3351 9.322776 GCAGAAAAATCGATTGTATATCATGAC 57.677 33.333 12.25 0.00 0.00 3.06
2972 3355 7.173218 ACCGCAGAAAAATCGATTGTATATCAT 59.827 33.333 12.25 0.00 0.00 2.45
3000 3383 6.933521 GCCACATATCAATTGTCTATCAGTCT 59.066 38.462 5.13 0.00 0.00 3.24
3070 3453 9.683069 AATGAATTCAGTTAAGCAGTTAAACAG 57.317 29.630 14.54 0.00 29.74 3.16
3071 3454 9.677567 GAATGAATTCAGTTAAGCAGTTAAACA 57.322 29.630 14.54 0.00 36.80 2.83
3072 3455 8.840867 CGAATGAATTCAGTTAAGCAGTTAAAC 58.159 33.333 14.54 0.00 36.61 2.01
3073 3456 8.779303 TCGAATGAATTCAGTTAAGCAGTTAAA 58.221 29.630 14.54 0.00 36.61 1.52
3074 3457 8.227791 GTCGAATGAATTCAGTTAAGCAGTTAA 58.772 33.333 14.54 0.00 36.61 2.01
3075 3458 7.602644 AGTCGAATGAATTCAGTTAAGCAGTTA 59.397 33.333 14.54 0.00 36.61 2.24
3076 3459 6.428159 AGTCGAATGAATTCAGTTAAGCAGTT 59.572 34.615 14.54 0.00 36.61 3.16
3077 3460 5.934625 AGTCGAATGAATTCAGTTAAGCAGT 59.065 36.000 14.54 0.00 36.61 4.40
3078 3461 6.128445 ACAGTCGAATGAATTCAGTTAAGCAG 60.128 38.462 21.18 4.35 36.61 4.24
3079 3462 5.700832 ACAGTCGAATGAATTCAGTTAAGCA 59.299 36.000 21.18 0.00 36.61 3.91
3080 3463 6.170675 ACAGTCGAATGAATTCAGTTAAGC 57.829 37.500 21.18 3.86 36.61 3.09
3081 3464 7.531871 CACAACAGTCGAATGAATTCAGTTAAG 59.468 37.037 21.18 7.35 36.61 1.85
3082 3465 7.011950 ACACAACAGTCGAATGAATTCAGTTAA 59.988 33.333 21.18 0.83 36.61 2.01
3083 3466 6.481976 ACACAACAGTCGAATGAATTCAGTTA 59.518 34.615 21.18 1.16 36.61 2.24
3084 3467 5.296780 ACACAACAGTCGAATGAATTCAGTT 59.703 36.000 21.18 7.62 36.61 3.16
3085 3468 4.816385 ACACAACAGTCGAATGAATTCAGT 59.184 37.500 21.18 11.65 36.61 3.41
3086 3469 5.050159 TGACACAACAGTCGAATGAATTCAG 60.050 40.000 21.18 6.56 41.41 3.02
3087 3470 4.813697 TGACACAACAGTCGAATGAATTCA 59.186 37.500 21.18 11.26 41.41 2.57
3088 3471 5.140177 GTGACACAACAGTCGAATGAATTC 58.860 41.667 21.18 8.52 41.41 2.17
3089 3472 4.318760 CGTGACACAACAGTCGAATGAATT 60.319 41.667 21.18 0.81 41.41 2.17
3090 3473 3.184379 CGTGACACAACAGTCGAATGAAT 59.816 43.478 21.18 4.94 41.41 2.57
3091 3474 2.538037 CGTGACACAACAGTCGAATGAA 59.462 45.455 21.18 0.00 41.41 2.57
3098 3481 3.465122 AAAACACGTGACACAACAGTC 57.535 42.857 25.01 0.00 38.99 3.51
3122 3505 9.177608 CAAGAATAGGTGTGGAATCAATAGAAA 57.822 33.333 0.00 0.00 0.00 2.52
3144 3527 5.523916 GCTTAGCCAGAATTAATCGACAAGA 59.476 40.000 0.00 0.00 0.00 3.02
3161 3544 1.216122 CGATCTTGAGCTGCTTAGCC 58.784 55.000 2.53 0.00 34.90 3.93
3171 3554 2.522836 AGCATAGCCACGATCTTGAG 57.477 50.000 0.00 0.00 0.00 3.02
3240 3623 3.906720 TGCTACTTCGGAATTAGGCTT 57.093 42.857 14.57 0.00 0.00 4.35
3316 3705 9.104965 CTCTGAATTTTAATTGTATCCCACGTA 57.895 33.333 0.00 0.00 0.00 3.57
3361 3750 8.662141 CATACGCACTTATATTACCCCATAAAC 58.338 37.037 0.00 0.00 0.00 2.01
3383 3773 7.494211 ACCCCTTAAACAGTTGAAAAACATAC 58.506 34.615 0.00 0.00 0.00 2.39
3450 3840 6.320494 ACGGTTGAAAAACATATGCACTTA 57.680 33.333 1.58 0.00 27.66 2.24
3504 3894 8.491045 AAAAGGGGACAAGATCAATTAAAAGA 57.509 30.769 0.00 0.00 0.00 2.52
3529 3919 5.945784 CCTCCAATCTGGTTGAATCTACAAA 59.054 40.000 1.35 0.00 40.37 2.83
3616 4006 8.662141 GCAGAAAAGTATGGTCGATTAAACTTA 58.338 33.333 6.61 0.00 0.00 2.24
3617 4007 7.527457 GCAGAAAAGTATGGTCGATTAAACTT 58.473 34.615 0.00 0.00 0.00 2.66
3618 4008 6.183360 CGCAGAAAAGTATGGTCGATTAAACT 60.183 38.462 0.00 0.00 0.00 2.66
3619 4009 5.957796 CGCAGAAAAGTATGGTCGATTAAAC 59.042 40.000 0.00 0.00 0.00 2.01
3620 4010 5.870433 TCGCAGAAAAGTATGGTCGATTAAA 59.130 36.000 0.00 0.00 0.00 1.52
3641 4031 5.493735 GCATAGTTTTCTACTGTGAATCGC 58.506 41.667 5.94 0.00 45.82 4.58
3694 4199 6.989169 ACTCAGCATAAATTACTCCTAGCTTG 59.011 38.462 0.00 0.00 0.00 4.01
3695 4200 7.130681 ACTCAGCATAAATTACTCCTAGCTT 57.869 36.000 0.00 0.00 0.00 3.74
3696 4201 6.739331 ACTCAGCATAAATTACTCCTAGCT 57.261 37.500 0.00 0.00 0.00 3.32
3701 4206 9.691362 TTTTGAAAACTCAGCATAAATTACTCC 57.309 29.630 0.00 0.00 0.00 3.85
3752 4257 9.967451 TCAAGTAATTTATGAACAGGGTTATCA 57.033 29.630 0.00 0.00 0.00 2.15
3757 4262 9.927668 CAAAATCAAGTAATTTATGAACAGGGT 57.072 29.630 0.00 0.00 0.00 4.34
3768 4273 9.965748 CACACGTTTTTCAAAATCAAGTAATTT 57.034 25.926 0.00 0.00 0.00 1.82
3769 4274 8.113675 GCACACGTTTTTCAAAATCAAGTAATT 58.886 29.630 0.00 0.00 0.00 1.40
3770 4275 7.276658 TGCACACGTTTTTCAAAATCAAGTAAT 59.723 29.630 0.00 0.00 0.00 1.89
3771 4276 6.586463 TGCACACGTTTTTCAAAATCAAGTAA 59.414 30.769 0.00 0.00 0.00 2.24
3772 4277 6.034044 GTGCACACGTTTTTCAAAATCAAGTA 59.966 34.615 13.17 0.00 0.00 2.24
3773 4278 4.926238 TGCACACGTTTTTCAAAATCAAGT 59.074 33.333 0.00 0.00 0.00 3.16
3774 4279 5.062058 AGTGCACACGTTTTTCAAAATCAAG 59.938 36.000 21.04 0.00 36.20 3.02
3775 4280 4.926238 AGTGCACACGTTTTTCAAAATCAA 59.074 33.333 21.04 0.00 36.20 2.57
3776 4281 4.489810 AGTGCACACGTTTTTCAAAATCA 58.510 34.783 21.04 0.00 36.20 2.57
3777 4282 5.448926 AAGTGCACACGTTTTTCAAAATC 57.551 34.783 21.04 0.00 36.20 2.17
3778 4283 7.397970 CAATAAGTGCACACGTTTTTCAAAAT 58.602 30.769 21.04 0.00 36.20 1.82
3779 4284 6.756176 CAATAAGTGCACACGTTTTTCAAAA 58.244 32.000 21.04 0.00 36.20 2.44
3780 4285 6.324522 CAATAAGTGCACACGTTTTTCAAA 57.675 33.333 21.04 0.00 36.20 2.69
3781 4286 5.940603 CAATAAGTGCACACGTTTTTCAA 57.059 34.783 21.04 0.00 36.20 2.69
3795 4300 6.375455 AGAACAGGGTTATCAAGCAATAAGTG 59.625 38.462 0.00 0.00 0.00 3.16
3796 4301 6.375455 CAGAACAGGGTTATCAAGCAATAAGT 59.625 38.462 0.00 0.00 0.00 2.24
3797 4302 6.375455 ACAGAACAGGGTTATCAAGCAATAAG 59.625 38.462 0.00 0.00 0.00 1.73
3798 4303 6.150976 CACAGAACAGGGTTATCAAGCAATAA 59.849 38.462 0.00 0.00 0.00 1.40
3799 4304 5.647658 CACAGAACAGGGTTATCAAGCAATA 59.352 40.000 0.00 0.00 0.00 1.90
3800 4305 4.460382 CACAGAACAGGGTTATCAAGCAAT 59.540 41.667 0.00 0.00 0.00 3.56
3801 4306 3.820467 CACAGAACAGGGTTATCAAGCAA 59.180 43.478 0.00 0.00 0.00 3.91
3802 4307 3.411446 CACAGAACAGGGTTATCAAGCA 58.589 45.455 0.00 0.00 0.00 3.91
3803 4308 2.162408 GCACAGAACAGGGTTATCAAGC 59.838 50.000 0.00 0.00 0.00 4.01
3804 4309 3.411446 TGCACAGAACAGGGTTATCAAG 58.589 45.455 0.00 0.00 0.00 3.02
3805 4310 3.072330 TCTGCACAGAACAGGGTTATCAA 59.928 43.478 0.00 0.00 35.78 2.57
3811 4316 0.037303 CCATCTGCACAGAACAGGGT 59.963 55.000 4.14 0.00 41.36 4.34
3820 4325 1.536940 CCAATCACACCATCTGCACA 58.463 50.000 0.00 0.00 0.00 4.57
3958 4463 3.117794 CACAGAACAAACGGTAGAACGA 58.882 45.455 0.00 0.00 37.61 3.85
3971 4476 4.642445 TCGACTCAAGTAACACAGAACA 57.358 40.909 0.00 0.00 0.00 3.18
3982 4487 1.805945 GCGGCGATTCGACTCAAGT 60.806 57.895 12.98 0.00 29.68 3.16
3983 4488 1.351430 TTGCGGCGATTCGACTCAAG 61.351 55.000 13.01 0.00 34.61 3.02
3984 4489 1.373622 TTGCGGCGATTCGACTCAA 60.374 52.632 13.01 13.01 37.25 3.02
3985 4490 2.092291 GTTGCGGCGATTCGACTCA 61.092 57.895 12.98 5.15 29.68 3.41
4035 4544 2.373540 TCCGAAAGATTACACGGTGG 57.626 50.000 13.48 0.00 44.72 4.61
4045 4554 7.786178 TCACGATTTGATTTATCCGAAAGAT 57.214 32.000 0.00 0.00 39.15 2.40
4046 4555 7.254761 CCATCACGATTTGATTTATCCGAAAGA 60.255 37.037 0.00 0.00 42.87 2.52
4047 4556 6.852853 CCATCACGATTTGATTTATCCGAAAG 59.147 38.462 0.00 0.00 42.87 2.62
4048 4557 6.540551 TCCATCACGATTTGATTTATCCGAAA 59.459 34.615 0.00 0.00 42.87 3.46
4078 4587 3.058224 GCACTGGTTTGAGACAATGGTAC 60.058 47.826 0.00 0.00 0.00 3.34
4079 4588 3.146066 GCACTGGTTTGAGACAATGGTA 58.854 45.455 0.00 0.00 0.00 3.25
4080 4589 1.956477 GCACTGGTTTGAGACAATGGT 59.044 47.619 0.00 0.00 0.00 3.55
4123 4632 5.949952 GGTGTTGTGAAATAAGACCCCTAAT 59.050 40.000 0.00 0.00 44.10 1.73
4125 4634 4.913784 GGTGTTGTGAAATAAGACCCCTA 58.086 43.478 0.00 0.00 44.10 3.53
4212 4728 2.963101 AGGATGATGTTCAATGGCATGG 59.037 45.455 0.00 0.00 0.00 3.66
4215 4731 3.054213 TCAGAGGATGATGTTCAATGGCA 60.054 43.478 0.00 0.00 31.12 4.92
4216 4732 3.548770 TCAGAGGATGATGTTCAATGGC 58.451 45.455 0.00 0.00 31.12 4.40
4217 4733 4.034858 CGTTCAGAGGATGATGTTCAATGG 59.965 45.833 0.00 0.00 37.89 3.16
4218 4734 4.034858 CCGTTCAGAGGATGATGTTCAATG 59.965 45.833 0.00 0.00 37.89 2.82
4219 4735 4.194640 CCGTTCAGAGGATGATGTTCAAT 58.805 43.478 0.00 0.00 37.89 2.57
4220 4736 3.007940 ACCGTTCAGAGGATGATGTTCAA 59.992 43.478 0.00 0.00 37.89 2.69
4221 4737 2.567169 ACCGTTCAGAGGATGATGTTCA 59.433 45.455 0.00 0.00 37.89 3.18
4222 4738 3.118956 AGACCGTTCAGAGGATGATGTTC 60.119 47.826 0.00 0.00 37.89 3.18
4223 4739 2.834549 AGACCGTTCAGAGGATGATGTT 59.165 45.455 0.00 0.00 37.89 2.71
4224 4740 2.461695 AGACCGTTCAGAGGATGATGT 58.538 47.619 0.00 0.00 37.89 3.06
4225 4741 4.098654 ACTTAGACCGTTCAGAGGATGATG 59.901 45.833 0.00 0.00 37.89 3.07
4226 4742 4.282496 ACTTAGACCGTTCAGAGGATGAT 58.718 43.478 0.00 0.00 37.89 2.45
4227 4743 3.698289 ACTTAGACCGTTCAGAGGATGA 58.302 45.455 0.00 0.00 35.62 2.92
4228 4744 4.202030 GGTACTTAGACCGTTCAGAGGATG 60.202 50.000 0.00 0.00 0.00 3.51
4229 4745 3.952967 GGTACTTAGACCGTTCAGAGGAT 59.047 47.826 0.00 0.00 0.00 3.24
4230 4746 3.245016 TGGTACTTAGACCGTTCAGAGGA 60.245 47.826 0.00 0.00 42.99 3.71
4231 4747 3.087031 TGGTACTTAGACCGTTCAGAGG 58.913 50.000 0.00 0.00 42.99 3.69
4232 4748 4.778534 TTGGTACTTAGACCGTTCAGAG 57.221 45.455 0.00 0.00 42.99 3.35
4233 4749 4.341806 TGTTTGGTACTTAGACCGTTCAGA 59.658 41.667 0.00 0.00 42.99 3.27
4234 4750 4.624015 TGTTTGGTACTTAGACCGTTCAG 58.376 43.478 0.00 0.00 42.99 3.02
4235 4751 4.669206 TGTTTGGTACTTAGACCGTTCA 57.331 40.909 0.00 0.00 42.99 3.18
4236 4752 7.201582 CCATATTGTTTGGTACTTAGACCGTTC 60.202 40.741 0.00 0.00 42.99 3.95
4237 4753 6.596497 CCATATTGTTTGGTACTTAGACCGTT 59.404 38.462 0.00 0.00 42.99 4.44
4238 4754 6.110707 CCATATTGTTTGGTACTTAGACCGT 58.889 40.000 0.00 0.00 42.99 4.83
4239 4755 5.007332 GCCATATTGTTTGGTACTTAGACCG 59.993 44.000 0.00 0.00 42.99 4.79
4240 4756 5.883673 TGCCATATTGTTTGGTACTTAGACC 59.116 40.000 0.00 0.00 40.21 3.85
4241 4757 6.995511 TGCCATATTGTTTGGTACTTAGAC 57.004 37.500 0.00 0.00 36.57 2.59
4242 4758 7.831690 TCAATGCCATATTGTTTGGTACTTAGA 59.168 33.333 0.00 0.00 36.57 2.10
4243 4759 7.995289 TCAATGCCATATTGTTTGGTACTTAG 58.005 34.615 0.00 0.00 36.57 2.18
4244 4760 7.946381 TCAATGCCATATTGTTTGGTACTTA 57.054 32.000 0.00 0.00 36.57 2.24
4245 4761 6.849085 TCAATGCCATATTGTTTGGTACTT 57.151 33.333 0.00 0.00 36.57 2.24
4246 4762 6.210385 TGTTCAATGCCATATTGTTTGGTACT 59.790 34.615 0.00 0.00 36.57 2.73
4247 4763 6.393990 TGTTCAATGCCATATTGTTTGGTAC 58.606 36.000 0.00 0.00 36.57 3.34
4248 4764 6.596309 TGTTCAATGCCATATTGTTTGGTA 57.404 33.333 0.00 0.00 36.57 3.25
4249 4765 5.480642 TGTTCAATGCCATATTGTTTGGT 57.519 34.783 0.00 0.00 36.57 3.67
4250 4766 6.107343 TGATGTTCAATGCCATATTGTTTGG 58.893 36.000 0.00 0.00 37.31 3.28
4251 4767 7.042321 GGATGATGTTCAATGCCATATTGTTTG 60.042 37.037 0.00 0.00 0.00 2.93
4252 4768 6.987992 GGATGATGTTCAATGCCATATTGTTT 59.012 34.615 0.00 0.00 0.00 2.83
4260 4776 3.054213 TCAGAGGATGATGTTCAATGCCA 60.054 43.478 0.00 0.00 31.12 4.92
4262 4778 3.003482 GCTCAGAGGATGATGTTCAATGC 59.997 47.826 0.00 0.00 37.28 3.56
4280 4796 0.182061 GGCAGGATCATCCAAGCTCA 59.818 55.000 17.73 0.00 39.61 4.26
4359 4875 0.896479 TGACCAAGGATGTCGTCGGA 60.896 55.000 0.00 0.00 35.46 4.55
4446 4962 1.139853 GAATCCCTGACCAGAGCGATT 59.860 52.381 0.00 3.28 0.00 3.34
4530 5046 1.427020 GCTGCTTCAGTTCCGATGC 59.573 57.895 0.00 0.00 36.78 3.91
4535 5051 0.250901 TTCCAGGCTGCTTCAGTTCC 60.251 55.000 9.56 0.00 33.43 3.62
4540 5056 3.040965 CCTTTTCCAGGCTGCTTCA 57.959 52.632 9.56 0.00 35.13 3.02
4638 5158 1.061799 GCAATCGCAACGACAAGCTG 61.062 55.000 0.00 0.00 39.18 4.24
4690 5218 4.460263 ACCTGAGCACACAAAATGAACTA 58.540 39.130 0.00 0.00 0.00 2.24
4691 5219 3.290710 ACCTGAGCACACAAAATGAACT 58.709 40.909 0.00 0.00 0.00 3.01
4722 5256 8.543774 GGTCTACTTCATCATCATTTTTCTACG 58.456 37.037 0.00 0.00 0.00 3.51
4733 5267 3.560481 TCGACGAGGTCTACTTCATCATC 59.440 47.826 0.00 0.00 0.00 2.92
4737 5271 2.619177 CCATCGACGAGGTCTACTTCAT 59.381 50.000 8.86 0.00 0.00 2.57
4738 5272 2.014857 CCATCGACGAGGTCTACTTCA 58.985 52.381 8.86 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.