Multiple sequence alignment - TraesCS1A01G239600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G239600 chr1A 100.000 3182 0 0 1 3182 426883438 426880257 0.000000e+00 5877.0
1 TraesCS1A01G239600 chr1A 84.058 69 7 3 302 368 462717038 462717104 2.650000e-06 63.9
2 TraesCS1A01G239600 chr1D 91.439 1647 72 25 577 2194 329726716 329725110 0.000000e+00 2196.0
3 TraesCS1A01G239600 chr1D 84.073 496 54 22 2699 3178 329724977 329724491 3.740000e-124 455.0
4 TraesCS1A01G239600 chr1D 81.152 382 51 8 2328 2690 319355623 319355244 1.440000e-73 287.0
5 TraesCS1A01G239600 chr1D 88.462 78 7 2 2217 2293 329725070 329724994 3.380000e-15 93.5
6 TraesCS1A01G239600 chr1B 92.671 1378 72 15 540 1904 444683421 444682060 0.000000e+00 1958.0
7 TraesCS1A01G239600 chr1B 89.336 422 36 7 1902 2321 444681976 444681562 3.640000e-144 521.0
8 TraesCS1A01G239600 chr1B 85.829 374 41 6 1 374 444683972 444683611 1.380000e-103 387.0
9 TraesCS1A01G239600 chr1B 80.080 502 42 26 2699 3182 444681562 444681101 1.420000e-83 320.0
10 TraesCS1A01G239600 chr1B 91.707 205 16 1 2328 2532 574275415 574275212 1.870000e-72 283.0
11 TraesCS1A01G239600 chr5B 83.871 341 50 5 2362 2700 503778160 503777823 1.420000e-83 320.0
12 TraesCS1A01G239600 chr5B 97.619 42 1 0 2972 3013 38603999 38604040 4.400000e-09 73.1
13 TraesCS1A01G239600 chr6D 92.537 201 15 0 2326 2526 269564365 269564565 4.020000e-74 289.0
14 TraesCS1A01G239600 chr6D 92.040 201 15 1 2327 2526 60237779 60237979 6.720000e-72 281.0
15 TraesCS1A01G239600 chr6A 92.537 201 15 0 2328 2528 469085845 469086045 4.020000e-74 289.0
16 TraesCS1A01G239600 chr3B 92.079 202 16 0 2327 2528 716369 716570 5.190000e-73 285.0
17 TraesCS1A01G239600 chr7B 92.386 197 15 0 2330 2526 614230074 614229878 6.720000e-72 281.0
18 TraesCS1A01G239600 chr2A 91.626 203 17 0 2324 2526 138153559 138153761 6.720000e-72 281.0
19 TraesCS1A01G239600 chr4D 79.293 396 71 8 1179 1564 450148258 450147864 1.880000e-67 267.0
20 TraesCS1A01G239600 chr4B 77.696 408 68 9 1179 1564 562927915 562927509 8.880000e-56 228.0
21 TraesCS1A01G239600 chr4A 81.455 275 46 4 1294 1564 16506157 16506430 1.490000e-53 220.0
22 TraesCS1A01G239600 chr4A 79.882 169 29 5 2535 2700 371747782 371747948 5.580000e-23 119.0
23 TraesCS1A01G239600 chr2D 97.500 40 1 0 2972 3011 398301683 398301644 5.700000e-08 69.4
24 TraesCS1A01G239600 chr2B 95.122 41 2 0 2971 3011 245305395 245305355 7.370000e-07 65.8
25 TraesCS1A01G239600 chr2B 79.221 77 16 0 2542 2618 775439866 775439790 2.000000e-03 54.7
26 TraesCS1A01G239600 chr6B 100.000 30 0 0 304 333 700535973 700536002 4.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G239600 chr1A 426880257 426883438 3181 True 5877.000000 5877 100.000000 1 3182 1 chr1A.!!$R1 3181
1 TraesCS1A01G239600 chr1D 329724491 329726716 2225 True 914.833333 2196 87.991333 577 3178 3 chr1D.!!$R2 2601
2 TraesCS1A01G239600 chr1B 444681101 444683972 2871 True 796.500000 1958 86.979000 1 3182 4 chr1B.!!$R2 3181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 1017 0.094216 CACACAGCGAATTCAGCGAG 59.906 55.0 6.22 10.21 40.04 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 2693 0.03831 GGTGCTTAGGGAAGGTGCTT 59.962 55.0 0.0 0.0 32.84 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.227134 CCTGCATCCGGGGAGACG 62.227 72.222 0.00 0.00 33.56 4.18
41 42 1.150992 ATCCGGGGAGACGTCTAGG 59.849 63.158 20.09 18.53 0.00 3.02
43 44 3.584052 CGGGGAGACGTCTAGGCG 61.584 72.222 20.09 16.63 37.94 5.52
56 57 2.579241 CTAGGCGTGACGTGTCTCCG 62.579 65.000 6.91 5.14 0.00 4.63
70 71 0.100682 TCTCCGACGATAGCTTGTGC 59.899 55.000 0.00 0.00 42.67 4.57
75 76 2.885644 CGATAGCTTGTGCGGCGT 60.886 61.111 9.37 0.00 45.42 5.68
81 82 4.368808 CTTGTGCGGCGTTGGTCG 62.369 66.667 9.37 0.00 46.00 4.79
93 94 1.667756 CGTTGGTCGAGATTCCGTCAA 60.668 52.381 0.00 0.00 42.86 3.18
95 96 1.254026 TGGTCGAGATTCCGTCAAGT 58.746 50.000 0.00 0.00 0.00 3.16
107 108 2.352817 GTCAAGTGGACGACCCTCT 58.647 57.895 0.34 0.00 40.30 3.69
115 116 0.392193 GGACGACCCTCTACTCGACA 60.392 60.000 0.00 0.00 33.96 4.35
116 117 1.008329 GACGACCCTCTACTCGACAG 58.992 60.000 0.00 0.00 33.96 3.51
117 118 0.392729 ACGACCCTCTACTCGACAGG 60.393 60.000 0.00 0.00 33.96 4.00
118 119 1.716826 CGACCCTCTACTCGACAGGC 61.717 65.000 0.00 0.00 31.24 4.85
148 149 1.828331 GACGTGGTGGTCTTCAACGC 61.828 60.000 0.00 0.00 40.04 4.84
153 154 0.442699 GGTGGTCTTCAACGCGATTC 59.557 55.000 15.93 0.00 0.00 2.52
155 156 1.011968 TGGTCTTCAACGCGATTCCG 61.012 55.000 15.93 0.00 39.16 4.30
197 198 1.386533 GGGTGAGTCGACGGATCTAA 58.613 55.000 10.46 0.00 0.00 2.10
203 204 1.402259 AGTCGACGGATCTAAGCACAG 59.598 52.381 10.46 0.00 0.00 3.66
205 206 0.872021 CGACGGATCTAAGCACAGCC 60.872 60.000 0.00 0.00 0.00 4.85
211 212 0.533755 ATCTAAGCACAGCCGGATGC 60.534 55.000 21.97 18.30 42.39 3.91
235 236 2.185310 GACTTGGAGATGGGGCGTGT 62.185 60.000 0.00 0.00 0.00 4.49
237 238 2.184020 CTTGGAGATGGGGCGTGTCA 62.184 60.000 0.00 0.00 0.00 3.58
238 239 1.561769 TTGGAGATGGGGCGTGTCAT 61.562 55.000 0.00 0.00 0.00 3.06
241 242 1.078214 AGATGGGGCGTGTCATGTG 60.078 57.895 0.00 0.00 0.00 3.21
273 274 1.418373 TCGCGACATCAAAGTCACTG 58.582 50.000 3.71 0.00 38.43 3.66
298 299 5.269505 AGTTATCTTTCGGATGTCTGGAG 57.730 43.478 0.00 0.00 35.98 3.86
300 301 1.938585 TCTTTCGGATGTCTGGAGGT 58.061 50.000 0.00 0.00 0.00 3.85
329 330 1.672881 GTGGTCATTACTCAGCCATGC 59.327 52.381 0.00 0.00 0.00 4.06
349 350 2.487934 CGGAAGTCAGGAAGCATATGG 58.512 52.381 4.56 0.00 0.00 2.74
384 427 6.644347 CAACCGCTGGAAGATAATAGGATAT 58.356 40.000 1.50 0.00 34.07 1.63
401 444 3.058914 GGATATGTGTTTAGGCATCGTGC 60.059 47.826 1.92 1.92 44.08 5.34
416 459 0.732571 CGTGCCTTATGTTTGCCGAT 59.267 50.000 0.00 0.00 0.00 4.18
417 460 1.132262 CGTGCCTTATGTTTGCCGATT 59.868 47.619 0.00 0.00 0.00 3.34
420 463 3.127895 GTGCCTTATGTTTGCCGATTGTA 59.872 43.478 0.00 0.00 0.00 2.41
428 471 5.378292 TGTTTGCCGATTGTAGCATTTTA 57.622 34.783 0.00 0.00 39.11 1.52
429 472 5.960113 TGTTTGCCGATTGTAGCATTTTAT 58.040 33.333 0.00 0.00 39.11 1.40
432 475 7.386299 TGTTTGCCGATTGTAGCATTTTATTTT 59.614 29.630 0.00 0.00 39.11 1.82
433 476 6.884096 TGCCGATTGTAGCATTTTATTTTG 57.116 33.333 0.00 0.00 33.08 2.44
434 477 6.625362 TGCCGATTGTAGCATTTTATTTTGA 58.375 32.000 0.00 0.00 33.08 2.69
435 478 7.264221 TGCCGATTGTAGCATTTTATTTTGAT 58.736 30.769 0.00 0.00 33.08 2.57
436 479 7.222417 TGCCGATTGTAGCATTTTATTTTGATG 59.778 33.333 0.00 0.00 33.08 3.07
437 480 7.434897 GCCGATTGTAGCATTTTATTTTGATGA 59.565 33.333 0.00 0.00 0.00 2.92
438 481 8.745837 CCGATTGTAGCATTTTATTTTGATGAC 58.254 33.333 0.00 0.00 0.00 3.06
439 482 9.288124 CGATTGTAGCATTTTATTTTGATGACA 57.712 29.630 0.00 0.00 0.00 3.58
457 515 8.205131 TGATGACATTGAGTTGTGATTCATAG 57.795 34.615 0.00 0.00 0.00 2.23
460 518 9.671279 ATGACATTGAGTTGTGATTCATAGTTA 57.329 29.630 0.00 0.00 0.00 2.24
461 519 9.500785 TGACATTGAGTTGTGATTCATAGTTAA 57.499 29.630 0.00 0.00 0.00 2.01
514 575 3.506108 CTTGATGCCAAGGCTCGG 58.494 61.111 12.96 0.00 44.58 4.63
515 576 2.045045 TTGATGCCAAGGCTCGGG 60.045 61.111 12.96 0.00 42.51 5.14
516 577 3.643595 TTGATGCCAAGGCTCGGGG 62.644 63.158 12.96 1.80 42.51 5.73
517 578 3.797353 GATGCCAAGGCTCGGGGA 61.797 66.667 12.96 4.71 42.51 4.81
518 579 3.764160 GATGCCAAGGCTCGGGGAG 62.764 68.421 12.96 0.00 42.51 4.30
520 581 4.475135 GCCAAGGCTCGGGGAGAC 62.475 72.222 3.29 0.00 38.12 3.36
556 617 3.420839 AAAAACACAGCTCCTTGTTCG 57.579 42.857 5.56 0.00 34.82 3.95
563 624 3.560068 CACAGCTCCTTGTTCGTAACTTT 59.440 43.478 0.00 0.00 0.00 2.66
567 628 3.808174 GCTCCTTGTTCGTAACTTTCACT 59.192 43.478 0.00 0.00 0.00 3.41
581 642 6.625873 AACTTTCACTTCACTCTTCCATTC 57.374 37.500 0.00 0.00 0.00 2.67
585 646 8.160106 ACTTTCACTTCACTCTTCCATTCTATT 58.840 33.333 0.00 0.00 0.00 1.73
587 648 6.644347 TCACTTCACTCTTCCATTCTATTCC 58.356 40.000 0.00 0.00 0.00 3.01
588 649 6.213397 TCACTTCACTCTTCCATTCTATTCCA 59.787 38.462 0.00 0.00 0.00 3.53
636 698 2.730672 GATGTGACCGCAGCGTGAC 61.731 63.158 15.05 7.56 0.00 3.67
811 873 3.119990 CCCATGTGTAAACCATTGACGAC 60.120 47.826 0.00 0.00 0.00 4.34
822 884 2.488153 CCATTGACGACCCTTTTCTTCC 59.512 50.000 0.00 0.00 0.00 3.46
835 897 5.105997 CCCTTTTCTTCCATTAGCTGTGAAG 60.106 44.000 0.00 3.32 35.32 3.02
859 941 0.250295 TACCAGCGCTGCCCATAATC 60.250 55.000 31.96 0.00 0.00 1.75
902 984 3.252701 TCCGAGTATAAAGATCGTCCAGC 59.747 47.826 0.00 0.00 34.71 4.85
908 990 0.107945 AAAGATCGTCCAGCAGGAGC 60.108 55.000 0.00 0.00 46.92 4.70
934 1016 1.900585 GCACACAGCGAATTCAGCGA 61.901 55.000 6.22 0.00 40.04 4.93
935 1017 0.094216 CACACAGCGAATTCAGCGAG 59.906 55.000 6.22 10.21 40.04 5.03
936 1018 1.059994 CACAGCGAATTCAGCGAGC 59.940 57.895 6.22 0.02 40.04 5.03
937 1019 2.319032 CAGCGAATTCAGCGAGCG 59.681 61.111 6.22 0.00 40.04 5.03
978 1066 1.740025 CGTCTCCTCAAATCTTTGGCC 59.260 52.381 0.00 0.00 38.66 5.36
1049 1141 0.813821 GCCTTCTCAGGTTTGCATCC 59.186 55.000 0.00 0.00 43.18 3.51
1059 1151 4.704540 TCAGGTTTGCATCCATAATCGTTT 59.295 37.500 10.40 0.00 0.00 3.60
1097 1192 4.282950 TCATCGTTCATACTCGTACCAC 57.717 45.455 0.00 0.00 0.00 4.16
1100 1195 3.076621 TCGTTCATACTCGTACCACTGT 58.923 45.455 0.00 0.00 0.00 3.55
1106 1201 2.973694 ACTCGTACCACTGTGTTTGT 57.026 45.000 7.08 0.32 0.00 2.83
1107 1202 2.546778 ACTCGTACCACTGTGTTTGTG 58.453 47.619 7.08 0.00 35.39 3.33
1113 1208 2.997980 ACCACTGTGTTTGTGTGATCA 58.002 42.857 7.08 0.00 33.95 2.92
1116 1211 4.036734 ACCACTGTGTTTGTGTGATCATTC 59.963 41.667 7.08 0.00 33.95 2.67
1130 1225 6.481644 GTGTGATCATTCCTTAGAGTTGATCC 59.518 42.308 0.00 2.34 39.93 3.36
1131 1226 5.694006 GTGATCATTCCTTAGAGTTGATCCG 59.306 44.000 0.00 0.00 39.93 4.18
1153 1248 8.890124 TCCGTATGGATTTTCGTTATGATTAA 57.110 30.769 0.00 0.00 40.17 1.40
1185 1280 1.144936 CGATGAAGGTCTGGGAGGC 59.855 63.158 0.00 0.00 0.00 4.70
1293 1388 1.676967 GGGGCTGTTCAAGGAGCAG 60.677 63.158 5.81 5.81 42.41 4.24
1331 1426 0.867753 GAGGACGAGTACATGCTGCG 60.868 60.000 0.00 0.00 0.00 5.18
1600 1695 4.051922 CGTAAGCTCTCTCTCTCTCTCTC 58.948 52.174 0.00 0.00 0.00 3.20
1604 1699 4.775236 AGCTCTCTCTCTCTCTCTCTTTC 58.225 47.826 0.00 0.00 0.00 2.62
1605 1700 4.472833 AGCTCTCTCTCTCTCTCTCTTTCT 59.527 45.833 0.00 0.00 0.00 2.52
1607 1702 5.649831 GCTCTCTCTCTCTCTCTCTTTCTTT 59.350 44.000 0.00 0.00 0.00 2.52
1608 1703 6.183360 GCTCTCTCTCTCTCTCTCTTTCTTTC 60.183 46.154 0.00 0.00 0.00 2.62
1609 1704 7.020827 TCTCTCTCTCTCTCTCTTTCTTTCT 57.979 40.000 0.00 0.00 0.00 2.52
1610 1705 7.461749 TCTCTCTCTCTCTCTCTTTCTTTCTT 58.538 38.462 0.00 0.00 0.00 2.52
1611 1706 7.944554 TCTCTCTCTCTCTCTCTTTCTTTCTTT 59.055 37.037 0.00 0.00 0.00 2.52
1612 1707 8.110860 TCTCTCTCTCTCTCTTTCTTTCTTTC 57.889 38.462 0.00 0.00 0.00 2.62
1613 1708 7.944554 TCTCTCTCTCTCTCTTTCTTTCTTTCT 59.055 37.037 0.00 0.00 0.00 2.52
1622 1721 9.934190 CTCTCTTTCTTTCTTTCTTTCTTCTTG 57.066 33.333 0.00 0.00 0.00 3.02
1623 1722 9.672673 TCTCTTTCTTTCTTTCTTTCTTCTTGA 57.327 29.630 0.00 0.00 0.00 3.02
1646 1745 1.152819 CATGGCCATGGAGGAGGTG 60.153 63.158 34.31 10.35 41.22 4.00
1809 1908 1.079543 CAGGCTGGTGGAGAACGAG 60.080 63.158 6.61 0.00 37.65 4.18
1845 1944 4.335647 ACCACCAGGAGCAAGCCG 62.336 66.667 0.00 0.00 38.69 5.52
1897 1996 3.332493 CTGCACGGCAAGCACATCC 62.332 63.158 0.00 0.00 38.41 3.51
2069 2254 2.813908 GGACGTGGACATGGACGC 60.814 66.667 12.45 3.75 39.22 5.19
2155 2340 2.357034 GCCACTTCAAGGACGCGA 60.357 61.111 15.93 0.00 0.00 5.87
2182 2367 1.278238 CCTCATCGTCGGCAAGTAAC 58.722 55.000 0.00 0.00 0.00 2.50
2184 2369 0.604073 TCATCGTCGGCAAGTAACCA 59.396 50.000 0.00 0.00 0.00 3.67
2185 2370 1.206132 TCATCGTCGGCAAGTAACCAT 59.794 47.619 0.00 0.00 0.00 3.55
2186 2371 2.427812 TCATCGTCGGCAAGTAACCATA 59.572 45.455 0.00 0.00 0.00 2.74
2187 2372 2.282701 TCGTCGGCAAGTAACCATAC 57.717 50.000 0.00 0.00 0.00 2.39
2188 2373 0.918619 CGTCGGCAAGTAACCATACG 59.081 55.000 0.00 0.00 37.11 3.06
2191 2376 3.548616 CGTCGGCAAGTAACCATACGATA 60.549 47.826 0.00 0.00 38.05 2.92
2192 2377 3.732721 GTCGGCAAGTAACCATACGATAC 59.267 47.826 0.00 0.00 37.11 2.24
2197 2382 5.526111 GGCAAGTAACCATACGATACAACAT 59.474 40.000 0.00 0.00 37.11 2.71
2212 2397 2.195096 CAACATTATTACGGACGCGGA 58.805 47.619 12.47 0.00 0.00 5.54
2215 2400 1.001048 CATTATTACGGACGCGGAGGA 60.001 52.381 12.47 0.00 0.00 3.71
2268 2473 5.299279 GTGTTTTTCTTCCTGGTTCATCTCA 59.701 40.000 0.00 0.00 0.00 3.27
2270 2475 6.550854 TGTTTTTCTTCCTGGTTCATCTCATT 59.449 34.615 0.00 0.00 0.00 2.57
2281 2486 1.726248 TCATCTCATTTCGTGTGTGCG 59.274 47.619 0.00 0.00 0.00 5.34
2293 2498 2.285892 CGTGTGTGCGTTTGTATGTTGA 60.286 45.455 0.00 0.00 0.00 3.18
2294 2499 3.605922 CGTGTGTGCGTTTGTATGTTGAT 60.606 43.478 0.00 0.00 0.00 2.57
2295 2500 3.663564 GTGTGTGCGTTTGTATGTTGATG 59.336 43.478 0.00 0.00 0.00 3.07
2299 2504 5.283717 GTGTGCGTTTGTATGTTGATGAATC 59.716 40.000 0.00 0.00 0.00 2.52
2320 2525 4.424566 GTCGAGCGGGCCGTGTAA 62.425 66.667 28.82 8.50 0.00 2.41
2321 2526 4.124351 TCGAGCGGGCCGTGTAAG 62.124 66.667 28.82 14.49 0.00 2.34
2323 2528 4.832608 GAGCGGGCCGTGTAAGGG 62.833 72.222 28.82 0.00 46.87 3.95
2327 2532 4.029809 GGGCCGTGTAAGGGTGCT 62.030 66.667 0.00 0.00 45.59 4.40
2328 2533 2.033602 GGCCGTGTAAGGGTGCTT 59.966 61.111 0.00 0.00 45.59 3.91
2329 2534 1.297364 GGCCGTGTAAGGGTGCTTA 59.703 57.895 0.00 0.00 45.59 3.09
2330 2535 0.743345 GGCCGTGTAAGGGTGCTTAG 60.743 60.000 0.00 0.00 45.59 2.18
2331 2536 0.743345 GCCGTGTAAGGGTGCTTAGG 60.743 60.000 0.00 0.00 45.59 2.69
2332 2537 0.743345 CCGTGTAAGGGTGCTTAGGC 60.743 60.000 0.00 0.00 37.03 3.93
2333 2538 0.743345 CGTGTAAGGGTGCTTAGGCC 60.743 60.000 0.00 0.00 37.74 5.19
2334 2539 0.618981 GTGTAAGGGTGCTTAGGCCT 59.381 55.000 11.78 11.78 37.74 5.19
2335 2540 1.004394 GTGTAAGGGTGCTTAGGCCTT 59.996 52.381 12.58 0.00 37.74 4.35
2336 2541 1.004277 TGTAAGGGTGCTTAGGCCTTG 59.996 52.381 12.58 5.72 37.74 3.61
2337 2542 1.004394 GTAAGGGTGCTTAGGCCTTGT 59.996 52.381 12.58 0.00 37.74 3.16
2338 2543 1.368374 AAGGGTGCTTAGGCCTTGTA 58.632 50.000 12.58 0.40 37.74 2.41
2339 2544 0.618981 AGGGTGCTTAGGCCTTGTAC 59.381 55.000 12.58 14.21 37.74 2.90
2340 2545 0.326927 GGGTGCTTAGGCCTTGTACA 59.673 55.000 12.58 1.21 37.74 2.90
2341 2546 1.271707 GGGTGCTTAGGCCTTGTACAA 60.272 52.381 12.58 8.28 37.74 2.41
2342 2547 2.620627 GGGTGCTTAGGCCTTGTACAAT 60.621 50.000 12.58 0.00 37.74 2.71
2343 2548 2.423538 GGTGCTTAGGCCTTGTACAATG 59.576 50.000 12.58 7.68 37.74 2.82
2344 2549 3.343617 GTGCTTAGGCCTTGTACAATGA 58.656 45.455 12.58 0.00 37.74 2.57
2345 2550 3.127030 GTGCTTAGGCCTTGTACAATGAC 59.873 47.826 12.58 11.52 37.74 3.06
2346 2551 3.244735 TGCTTAGGCCTTGTACAATGACA 60.245 43.478 12.58 2.81 37.74 3.58
2347 2552 3.756434 GCTTAGGCCTTGTACAATGACAA 59.244 43.478 12.58 9.51 36.98 3.18
2348 2553 4.217550 GCTTAGGCCTTGTACAATGACAAA 59.782 41.667 12.58 3.98 38.80 2.83
2349 2554 5.105756 GCTTAGGCCTTGTACAATGACAAAT 60.106 40.000 12.58 1.49 38.80 2.32
2350 2555 4.789012 AGGCCTTGTACAATGACAAATG 57.211 40.909 17.67 0.44 38.80 2.32
2351 2556 3.056607 AGGCCTTGTACAATGACAAATGC 60.057 43.478 17.67 7.08 38.80 3.56
2352 2557 3.056607 GGCCTTGTACAATGACAAATGCT 60.057 43.478 14.26 0.00 38.80 3.79
2353 2558 4.559153 GCCTTGTACAATGACAAATGCTT 58.441 39.130 14.26 0.00 38.80 3.91
2354 2559 5.336372 GGCCTTGTACAATGACAAATGCTTA 60.336 40.000 14.26 0.00 38.80 3.09
2355 2560 5.801947 GCCTTGTACAATGACAAATGCTTAG 59.198 40.000 14.26 0.00 38.80 2.18
2356 2561 6.349280 GCCTTGTACAATGACAAATGCTTAGA 60.349 38.462 14.26 0.00 38.80 2.10
2357 2562 7.246311 CCTTGTACAATGACAAATGCTTAGAG 58.754 38.462 9.13 0.00 38.80 2.43
2358 2563 6.741992 TGTACAATGACAAATGCTTAGAGG 57.258 37.500 0.00 0.00 0.00 3.69
2359 2564 5.647658 TGTACAATGACAAATGCTTAGAGGG 59.352 40.000 0.00 0.00 0.00 4.30
2360 2565 4.019174 ACAATGACAAATGCTTAGAGGGG 58.981 43.478 0.00 0.00 0.00 4.79
2361 2566 4.019174 CAATGACAAATGCTTAGAGGGGT 58.981 43.478 0.00 0.00 0.00 4.95
2362 2567 3.071874 TGACAAATGCTTAGAGGGGTG 57.928 47.619 0.00 0.00 0.00 4.61
2363 2568 1.745653 GACAAATGCTTAGAGGGGTGC 59.254 52.381 0.00 0.00 0.00 5.01
2364 2569 1.355720 ACAAATGCTTAGAGGGGTGCT 59.644 47.619 0.00 0.00 0.00 4.40
2365 2570 2.225117 ACAAATGCTTAGAGGGGTGCTT 60.225 45.455 0.00 0.00 0.00 3.91
2366 2571 3.010138 ACAAATGCTTAGAGGGGTGCTTA 59.990 43.478 0.00 0.00 0.00 3.09
2367 2572 4.016444 CAAATGCTTAGAGGGGTGCTTAA 58.984 43.478 0.00 0.00 0.00 1.85
2368 2573 4.316025 AATGCTTAGAGGGGTGCTTAAA 57.684 40.909 0.00 0.00 0.00 1.52
2369 2574 3.799432 TGCTTAGAGGGGTGCTTAAAA 57.201 42.857 0.00 0.00 0.00 1.52
2370 2575 4.107127 TGCTTAGAGGGGTGCTTAAAAA 57.893 40.909 0.00 0.00 0.00 1.94
2412 2617 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
2413 2618 2.550978 CACCGGTGCCTATTTCTACAG 58.449 52.381 24.02 0.00 0.00 2.74
2414 2619 1.485066 ACCGGTGCCTATTTCTACAGG 59.515 52.381 6.12 0.00 35.04 4.00
2415 2620 1.760613 CCGGTGCCTATTTCTACAGGA 59.239 52.381 0.00 0.00 33.42 3.86
2416 2621 2.224066 CCGGTGCCTATTTCTACAGGAG 60.224 54.545 0.00 0.00 33.42 3.69
2417 2622 2.693591 CGGTGCCTATTTCTACAGGAGA 59.306 50.000 0.00 0.00 33.42 3.71
2418 2623 3.243569 CGGTGCCTATTTCTACAGGAGAG 60.244 52.174 0.00 0.00 34.93 3.20
2419 2624 3.961408 GGTGCCTATTTCTACAGGAGAGA 59.039 47.826 0.00 0.00 34.93 3.10
2420 2625 4.202172 GGTGCCTATTTCTACAGGAGAGAC 60.202 50.000 0.00 0.00 34.93 3.36
2421 2626 3.632604 TGCCTATTTCTACAGGAGAGACG 59.367 47.826 0.00 0.00 34.93 4.18
2422 2627 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
2423 2628 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
2424 2629 4.339814 CCTATTTCTACAGGAGAGACGCTT 59.660 45.833 0.00 0.00 34.93 4.68
2425 2630 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
2426 2631 4.966965 TTTCTACAGGAGAGACGCTTAG 57.033 45.455 0.00 0.00 34.93 2.18
2427 2632 3.630892 TCTACAGGAGAGACGCTTAGT 57.369 47.619 0.00 0.00 0.00 2.24
2428 2633 3.952931 TCTACAGGAGAGACGCTTAGTT 58.047 45.455 0.00 0.00 0.00 2.24
2429 2634 5.095145 TCTACAGGAGAGACGCTTAGTTA 57.905 43.478 0.00 0.00 0.00 2.24
2430 2635 5.494724 TCTACAGGAGAGACGCTTAGTTAA 58.505 41.667 0.00 0.00 0.00 2.01
2431 2636 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
2432 2637 9.223557 TTCTACAGGAGAGACGCTTAGTTAAGC 62.224 44.444 12.72 12.72 44.08 3.09
2447 2652 8.470040 CTTAGTTAAGCGTTTATCCTGTACAA 57.530 34.615 0.00 0.00 0.00 2.41
2448 2653 8.830201 TTAGTTAAGCGTTTATCCTGTACAAA 57.170 30.769 0.00 0.00 0.00 2.83
2449 2654 7.916914 AGTTAAGCGTTTATCCTGTACAAAT 57.083 32.000 0.00 0.00 0.00 2.32
2451 2656 9.439500 AGTTAAGCGTTTATCCTGTACAAATAA 57.561 29.630 0.00 1.84 0.00 1.40
2452 2657 9.698617 GTTAAGCGTTTATCCTGTACAAATAAG 57.301 33.333 0.00 0.00 0.00 1.73
2453 2658 6.359480 AGCGTTTATCCTGTACAAATAAGC 57.641 37.500 0.00 5.86 0.00 3.09
2454 2659 5.878116 AGCGTTTATCCTGTACAAATAAGCA 59.122 36.000 17.24 3.38 0.00 3.91
2455 2660 5.963586 GCGTTTATCCTGTACAAATAAGCAC 59.036 40.000 17.24 10.83 0.00 4.40
2456 2661 6.483687 CGTTTATCCTGTACAAATAAGCACC 58.516 40.000 17.24 6.82 0.00 5.01
2457 2662 6.483687 GTTTATCCTGTACAAATAAGCACCG 58.516 40.000 14.46 0.00 0.00 4.94
2458 2663 2.980568 TCCTGTACAAATAAGCACCGG 58.019 47.619 0.00 0.00 0.00 5.28
2459 2664 2.303600 TCCTGTACAAATAAGCACCGGT 59.696 45.455 0.00 0.00 0.00 5.28
2460 2665 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
2475 2680 4.969816 CACCGGTGCTTAAGAAAAGTATG 58.030 43.478 24.02 0.00 0.00 2.39
2476 2681 4.693566 CACCGGTGCTTAAGAAAAGTATGA 59.306 41.667 24.02 0.00 0.00 2.15
2477 2682 5.354234 CACCGGTGCTTAAGAAAAGTATGAT 59.646 40.000 24.02 0.00 0.00 2.45
2478 2683 5.944007 ACCGGTGCTTAAGAAAAGTATGATT 59.056 36.000 6.12 0.00 0.00 2.57
2479 2684 6.433093 ACCGGTGCTTAAGAAAAGTATGATTT 59.567 34.615 6.12 0.00 0.00 2.17
2480 2685 7.608761 ACCGGTGCTTAAGAAAAGTATGATTTA 59.391 33.333 6.12 0.00 0.00 1.40
2481 2686 8.621286 CCGGTGCTTAAGAAAAGTATGATTTAT 58.379 33.333 6.67 0.00 0.00 1.40
2499 2704 7.382898 TGATTTATTTTTGTAAGCACCTTCCC 58.617 34.615 0.00 0.00 0.00 3.97
2500 2705 6.987403 TTTATTTTTGTAAGCACCTTCCCT 57.013 33.333 0.00 0.00 0.00 4.20
2501 2706 8.658840 ATTTATTTTTGTAAGCACCTTCCCTA 57.341 30.769 0.00 0.00 0.00 3.53
2502 2707 8.480133 TTTATTTTTGTAAGCACCTTCCCTAA 57.520 30.769 0.00 0.00 0.00 2.69
2503 2708 6.590234 ATTTTTGTAAGCACCTTCCCTAAG 57.410 37.500 0.00 0.00 0.00 2.18
2504 2709 2.781681 TGTAAGCACCTTCCCTAAGC 57.218 50.000 0.00 0.00 0.00 3.09
2505 2710 1.982226 TGTAAGCACCTTCCCTAAGCA 59.018 47.619 0.00 0.00 0.00 3.91
2506 2711 2.290071 TGTAAGCACCTTCCCTAAGCAC 60.290 50.000 0.00 0.00 0.00 4.40
2507 2712 0.038310 AAGCACCTTCCCTAAGCACC 59.962 55.000 0.00 0.00 0.00 5.01
2508 2713 0.842467 AGCACCTTCCCTAAGCACCT 60.842 55.000 0.00 0.00 0.00 4.00
2509 2714 0.038310 GCACCTTCCCTAAGCACCTT 59.962 55.000 0.00 0.00 0.00 3.50
2510 2715 1.547901 GCACCTTCCCTAAGCACCTTT 60.548 52.381 0.00 0.00 0.00 3.11
2511 2716 2.437413 CACCTTCCCTAAGCACCTTTC 58.563 52.381 0.00 0.00 0.00 2.62
2512 2717 2.062636 ACCTTCCCTAAGCACCTTTCA 58.937 47.619 0.00 0.00 0.00 2.69
2513 2718 2.649816 ACCTTCCCTAAGCACCTTTCAT 59.350 45.455 0.00 0.00 0.00 2.57
2514 2719 3.076032 ACCTTCCCTAAGCACCTTTCATT 59.924 43.478 0.00 0.00 0.00 2.57
2515 2720 3.445096 CCTTCCCTAAGCACCTTTCATTG 59.555 47.826 0.00 0.00 0.00 2.82
2516 2721 3.806949 TCCCTAAGCACCTTTCATTGT 57.193 42.857 0.00 0.00 0.00 2.71
2517 2722 4.919774 TCCCTAAGCACCTTTCATTGTA 57.080 40.909 0.00 0.00 0.00 2.41
2518 2723 4.585879 TCCCTAAGCACCTTTCATTGTAC 58.414 43.478 0.00 0.00 0.00 2.90
2519 2724 4.042311 TCCCTAAGCACCTTTCATTGTACA 59.958 41.667 0.00 0.00 0.00 2.90
2520 2725 4.764823 CCCTAAGCACCTTTCATTGTACAA 59.235 41.667 11.41 11.41 0.00 2.41
2521 2726 5.106157 CCCTAAGCACCTTTCATTGTACAAG 60.106 44.000 14.65 6.58 0.00 3.16
2522 2727 4.853924 AAGCACCTTTCATTGTACAAGG 57.146 40.909 13.96 13.96 42.59 3.61
2523 2728 2.558359 AGCACCTTTCATTGTACAAGGC 59.442 45.455 15.24 7.55 40.85 4.35
2524 2729 2.352715 GCACCTTTCATTGTACAAGGCC 60.353 50.000 15.24 0.00 40.85 5.19
2525 2730 3.157087 CACCTTTCATTGTACAAGGCCT 58.843 45.455 15.24 0.00 40.85 5.19
2526 2731 3.573967 CACCTTTCATTGTACAAGGCCTT 59.426 43.478 13.78 13.78 40.85 4.35
2527 2732 4.764823 CACCTTTCATTGTACAAGGCCTTA 59.235 41.667 20.00 1.64 40.85 2.69
2528 2733 4.765339 ACCTTTCATTGTACAAGGCCTTAC 59.235 41.667 20.00 14.80 40.85 2.34
2529 2734 4.764823 CCTTTCATTGTACAAGGCCTTACA 59.235 41.667 20.00 17.53 30.94 2.41
2530 2735 5.106157 CCTTTCATTGTACAAGGCCTTACAG 60.106 44.000 20.00 8.91 30.94 2.74
2531 2736 4.901197 TCATTGTACAAGGCCTTACAGA 57.099 40.909 20.00 11.51 30.03 3.41
2532 2737 5.235850 TCATTGTACAAGGCCTTACAGAA 57.764 39.130 20.00 13.68 30.03 3.02
2533 2738 5.626142 TCATTGTACAAGGCCTTACAGAAA 58.374 37.500 20.00 9.80 30.03 2.52
2534 2739 6.245408 TCATTGTACAAGGCCTTACAGAAAT 58.755 36.000 20.00 11.66 30.03 2.17
2535 2740 5.957842 TTGTACAAGGCCTTACAGAAATG 57.042 39.130 20.00 6.46 30.03 2.32
2536 2741 4.980573 TGTACAAGGCCTTACAGAAATGT 58.019 39.130 20.00 12.78 0.00 2.71
2537 2742 5.381757 TGTACAAGGCCTTACAGAAATGTT 58.618 37.500 20.00 0.00 0.00 2.71
2538 2743 5.830991 TGTACAAGGCCTTACAGAAATGTTT 59.169 36.000 20.00 0.00 0.00 2.83
2539 2744 6.999272 TGTACAAGGCCTTACAGAAATGTTTA 59.001 34.615 20.00 0.00 0.00 2.01
2540 2745 6.969993 ACAAGGCCTTACAGAAATGTTTAA 57.030 33.333 20.00 0.00 0.00 1.52
2541 2746 7.354751 ACAAGGCCTTACAGAAATGTTTAAA 57.645 32.000 20.00 0.00 0.00 1.52
2542 2747 7.787028 ACAAGGCCTTACAGAAATGTTTAAAA 58.213 30.769 20.00 0.00 0.00 1.52
2543 2748 8.261522 ACAAGGCCTTACAGAAATGTTTAAAAA 58.738 29.630 20.00 0.00 0.00 1.94
2566 2771 8.744568 AAAATAAATTGGGTTTTTCTGAAGCA 57.255 26.923 0.00 0.00 0.00 3.91
2567 2772 8.922931 AAATAAATTGGGTTTTTCTGAAGCAT 57.077 26.923 0.00 0.00 0.00 3.79
2568 2773 8.552083 AATAAATTGGGTTTTTCTGAAGCATC 57.448 30.769 0.00 0.00 0.00 3.91
2569 2774 3.641437 TTGGGTTTTTCTGAAGCATCG 57.359 42.857 0.00 0.00 0.00 3.84
2570 2775 1.885887 TGGGTTTTTCTGAAGCATCGG 59.114 47.619 0.00 0.00 0.00 4.18
2571 2776 1.886542 GGGTTTTTCTGAAGCATCGGT 59.113 47.619 0.00 0.00 33.40 4.69
2572 2777 2.351738 GGGTTTTTCTGAAGCATCGGTG 60.352 50.000 0.00 0.00 33.40 4.94
2585 2790 2.744202 GCATCGGTGCCTAATTCTATGG 59.256 50.000 10.29 0.00 45.76 2.74
2586 2791 3.338249 CATCGGTGCCTAATTCTATGGG 58.662 50.000 0.00 0.00 0.00 4.00
2587 2792 2.684943 TCGGTGCCTAATTCTATGGGA 58.315 47.619 0.00 0.00 0.00 4.37
2588 2793 3.042682 TCGGTGCCTAATTCTATGGGAA 58.957 45.455 0.00 0.00 38.41 3.97
2589 2794 3.456644 TCGGTGCCTAATTCTATGGGAAA 59.543 43.478 0.00 0.00 37.49 3.13
2590 2795 3.815401 CGGTGCCTAATTCTATGGGAAAG 59.185 47.826 0.00 0.00 37.49 2.62
2591 2796 4.444306 CGGTGCCTAATTCTATGGGAAAGA 60.444 45.833 0.00 0.00 37.49 2.52
2592 2797 4.822350 GGTGCCTAATTCTATGGGAAAGAC 59.178 45.833 0.00 0.00 37.49 3.01
2593 2798 4.511826 GTGCCTAATTCTATGGGAAAGACG 59.488 45.833 0.00 0.00 37.49 4.18
2594 2799 3.498777 GCCTAATTCTATGGGAAAGACGC 59.501 47.826 0.00 0.00 37.49 5.19
2595 2800 4.743955 GCCTAATTCTATGGGAAAGACGCT 60.744 45.833 0.00 0.00 37.49 5.07
2596 2801 5.368989 CCTAATTCTATGGGAAAGACGCTT 58.631 41.667 0.00 0.00 37.49 4.68
2597 2802 6.522054 CCTAATTCTATGGGAAAGACGCTTA 58.478 40.000 0.00 0.00 37.49 3.09
2598 2803 6.990349 CCTAATTCTATGGGAAAGACGCTTAA 59.010 38.462 0.00 0.00 37.49 1.85
2599 2804 7.661847 CCTAATTCTATGGGAAAGACGCTTAAT 59.338 37.037 0.00 0.00 37.49 1.40
2600 2805 7.881775 AATTCTATGGGAAAGACGCTTAATT 57.118 32.000 0.00 0.00 37.49 1.40
2601 2806 8.974060 AATTCTATGGGAAAGACGCTTAATTA 57.026 30.769 0.00 0.00 37.49 1.40
2602 2807 8.974060 ATTCTATGGGAAAGACGCTTAATTAA 57.026 30.769 0.00 0.00 37.49 1.40
2603 2808 8.795842 TTCTATGGGAAAGACGCTTAATTAAA 57.204 30.769 0.00 0.00 0.00 1.52
2604 2809 8.205131 TCTATGGGAAAGACGCTTAATTAAAC 57.795 34.615 0.00 0.00 0.00 2.01
2605 2810 5.285798 TGGGAAAGACGCTTAATTAAACG 57.714 39.130 17.14 17.14 0.00 3.60
2606 2811 4.756135 TGGGAAAGACGCTTAATTAAACGT 59.244 37.500 22.72 22.72 42.27 3.99
2615 2820 7.823149 ACGCTTAATTAAACGTCTATTCTGT 57.177 32.000 18.34 0.00 32.37 3.41
2616 2821 8.915871 ACGCTTAATTAAACGTCTATTCTGTA 57.084 30.769 18.34 0.00 32.37 2.74
2617 2822 8.801913 ACGCTTAATTAAACGTCTATTCTGTAC 58.198 33.333 18.34 0.00 32.37 2.90
2618 2823 8.800972 CGCTTAATTAAACGTCTATTCTGTACA 58.199 33.333 11.87 0.00 0.00 2.90
2628 2833 8.644318 ACGTCTATTCTGTACAAATAATCACC 57.356 34.615 0.00 0.00 0.00 4.02
2629 2834 7.434307 ACGTCTATTCTGTACAAATAATCACCG 59.566 37.037 0.00 3.76 0.00 4.94
2630 2835 7.096189 CGTCTATTCTGTACAAATAATCACCGG 60.096 40.741 0.00 0.00 0.00 5.28
2631 2836 7.709613 GTCTATTCTGTACAAATAATCACCGGT 59.290 37.037 0.00 0.00 0.00 5.28
2632 2837 8.916062 TCTATTCTGTACAAATAATCACCGGTA 58.084 33.333 6.87 0.00 0.00 4.02
2633 2838 7.781548 ATTCTGTACAAATAATCACCGGTAC 57.218 36.000 6.87 0.00 33.53 3.34
2634 2839 6.534475 TCTGTACAAATAATCACCGGTACT 57.466 37.500 6.87 0.00 33.94 2.73
2635 2840 6.938507 TCTGTACAAATAATCACCGGTACTT 58.061 36.000 6.87 6.40 33.94 2.24
2636 2841 8.065473 TCTGTACAAATAATCACCGGTACTTA 57.935 34.615 6.87 8.72 33.94 2.24
2637 2842 8.530311 TCTGTACAAATAATCACCGGTACTTAA 58.470 33.333 6.87 0.00 33.94 1.85
2638 2843 9.153721 CTGTACAAATAATCACCGGTACTTAAA 57.846 33.333 6.87 0.00 33.94 1.52
2639 2844 9.499479 TGTACAAATAATCACCGGTACTTAAAA 57.501 29.630 6.87 0.00 33.94 1.52
2663 2868 6.679327 AACATCCGGTTTATTTCTCTAAGC 57.321 37.500 0.00 0.00 35.82 3.09
2664 2869 5.741011 ACATCCGGTTTATTTCTCTAAGCA 58.259 37.500 0.00 0.00 0.00 3.91
2665 2870 5.585047 ACATCCGGTTTATTTCTCTAAGCAC 59.415 40.000 0.00 0.00 0.00 4.40
2666 2871 5.416271 TCCGGTTTATTTCTCTAAGCACT 57.584 39.130 0.00 0.00 0.00 4.40
2667 2872 5.801380 TCCGGTTTATTTCTCTAAGCACTT 58.199 37.500 0.00 0.00 0.00 3.16
2668 2873 6.235664 TCCGGTTTATTTCTCTAAGCACTTT 58.764 36.000 0.00 0.00 0.00 2.66
2669 2874 6.713450 TCCGGTTTATTTCTCTAAGCACTTTT 59.287 34.615 0.00 0.00 0.00 2.27
2670 2875 7.229907 TCCGGTTTATTTCTCTAAGCACTTTTT 59.770 33.333 0.00 0.00 0.00 1.94
2671 2876 7.537649 CCGGTTTATTTCTCTAAGCACTTTTTC 59.462 37.037 0.00 0.00 0.00 2.29
2672 2877 8.290325 CGGTTTATTTCTCTAAGCACTTTTTCT 58.710 33.333 0.00 0.00 0.00 2.52
2677 2882 7.801716 TTTCTCTAAGCACTTTTTCTAAGCA 57.198 32.000 0.00 0.00 0.00 3.91
2678 2883 7.986085 TTCTCTAAGCACTTTTTCTAAGCAT 57.014 32.000 0.00 0.00 0.00 3.79
2679 2884 7.602517 TCTCTAAGCACTTTTTCTAAGCATC 57.397 36.000 0.00 0.00 0.00 3.91
2680 2885 7.390027 TCTCTAAGCACTTTTTCTAAGCATCT 58.610 34.615 0.00 0.00 0.00 2.90
2681 2886 7.880195 TCTCTAAGCACTTTTTCTAAGCATCTT 59.120 33.333 0.00 0.00 0.00 2.40
2682 2887 8.034058 TCTAAGCACTTTTTCTAAGCATCTTC 57.966 34.615 0.00 0.00 0.00 2.87
2683 2888 5.635417 AGCACTTTTTCTAAGCATCTTCC 57.365 39.130 0.00 0.00 0.00 3.46
2684 2889 5.072741 AGCACTTTTTCTAAGCATCTTCCA 58.927 37.500 0.00 0.00 0.00 3.53
2685 2890 5.713861 AGCACTTTTTCTAAGCATCTTCCAT 59.286 36.000 0.00 0.00 0.00 3.41
2686 2891 6.210185 AGCACTTTTTCTAAGCATCTTCCATT 59.790 34.615 0.00 0.00 0.00 3.16
2687 2892 7.394359 AGCACTTTTTCTAAGCATCTTCCATTA 59.606 33.333 0.00 0.00 0.00 1.90
2688 2893 8.193438 GCACTTTTTCTAAGCATCTTCCATTAT 58.807 33.333 0.00 0.00 0.00 1.28
2696 2901 9.561069 TCTAAGCATCTTCCATTATAAAAGACC 57.439 33.333 1.14 0.00 32.22 3.85
2697 2902 9.566432 CTAAGCATCTTCCATTATAAAAGACCT 57.434 33.333 1.14 0.00 32.22 3.85
2722 2927 0.391228 TTGCAGCTGAGGTCGTGTAA 59.609 50.000 20.43 0.00 0.00 2.41
2723 2928 0.608130 TGCAGCTGAGGTCGTGTAAT 59.392 50.000 20.43 0.00 0.00 1.89
2724 2929 1.822371 TGCAGCTGAGGTCGTGTAATA 59.178 47.619 20.43 0.00 0.00 0.98
2753 2958 7.520614 GCTGATCGGGGATCAAATAAAGTTAAG 60.521 40.741 9.36 0.00 46.51 1.85
2777 2982 5.809051 GCATTTGGATCTTTCTGTTCCATTC 59.191 40.000 0.00 0.00 42.31 2.67
2923 3129 3.863142 AATGCTCCTTGATCTTGCAAC 57.137 42.857 0.00 0.00 37.20 4.17
2936 3142 3.766545 TCTTGCAACATCTAGGCCTTTT 58.233 40.909 12.58 0.00 0.00 2.27
2956 3162 8.978539 GCCTTTTCCTAAAAATTTGTAACTGAG 58.021 33.333 0.00 0.00 34.00 3.35
3013 3220 5.473162 AGTTGCCTGATTTTTAAATTTGGGC 59.527 36.000 0.00 14.35 37.70 5.36
3021 3228 5.506686 TTTTTAAATTTGGGCAAGCCAAC 57.493 34.783 13.87 0.00 37.98 3.77
3022 3229 4.429854 TTTAAATTTGGGCAAGCCAACT 57.570 36.364 13.87 0.00 37.98 3.16
3023 3230 4.429854 TTAAATTTGGGCAAGCCAACTT 57.570 36.364 13.87 3.72 37.98 2.66
3024 3231 3.295585 AAATTTGGGCAAGCCAACTTT 57.704 38.095 13.87 8.97 37.98 2.66
3025 3232 2.549064 ATTTGGGCAAGCCAACTTTC 57.451 45.000 13.87 0.00 37.98 2.62
3026 3233 1.494960 TTTGGGCAAGCCAACTTTCT 58.505 45.000 13.87 0.00 37.98 2.52
3027 3234 0.752054 TTGGGCAAGCCAACTTTCTG 59.248 50.000 13.87 0.00 37.98 3.02
3028 3235 0.106268 TGGGCAAGCCAACTTTCTGA 60.106 50.000 13.87 0.00 37.98 3.27
3029 3236 0.315251 GGGCAAGCCAACTTTCTGAC 59.685 55.000 13.87 0.00 37.98 3.51
3030 3237 0.040067 GGCAAGCCAACTTTCTGACG 60.040 55.000 6.14 0.00 32.29 4.35
3031 3238 0.944386 GCAAGCCAACTTTCTGACGA 59.056 50.000 0.00 0.00 32.29 4.20
3032 3239 1.069636 GCAAGCCAACTTTCTGACGAG 60.070 52.381 0.00 0.00 32.29 4.18
3033 3240 2.213499 CAAGCCAACTTTCTGACGAGT 58.787 47.619 0.00 0.00 32.29 4.18
3034 3241 2.156343 AGCCAACTTTCTGACGAGTC 57.844 50.000 0.00 0.00 0.00 3.36
3051 3258 6.037786 ACGAGTCTTTTCTGACCATTGATA 57.962 37.500 0.00 0.00 37.66 2.15
3112 3342 9.581099 TTTTAGAAGGTGTTGAATTTTTGACTC 57.419 29.630 0.00 0.00 0.00 3.36
3116 3346 4.881850 AGGTGTTGAATTTTTGACTCGTCT 59.118 37.500 0.00 0.00 0.00 4.18
3122 3352 7.272515 TGTTGAATTTTTGACTCGTCTTTGTTC 59.727 33.333 0.00 0.00 0.00 3.18
3123 3353 5.963004 TGAATTTTTGACTCGTCTTTGTTCG 59.037 36.000 0.00 0.00 0.00 3.95
3126 3356 0.029700 TGACTCGTCTTTGTTCGCGA 59.970 50.000 3.71 3.71 0.00 5.87
3135 3365 3.059868 GTCTTTGTTCGCGATCAGTTGAA 60.060 43.478 18.37 10.14 0.00 2.69
3170 3400 2.811317 GCCCGTTGCTCACTCTCG 60.811 66.667 0.00 0.00 36.87 4.04
3171 3401 2.651361 CCCGTTGCTCACTCTCGT 59.349 61.111 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.173444 CCTAGACGTCTCCCCGGATG 61.173 65.000 23.89 0.00 0.00 3.51
35 36 0.179194 GAGACACGTCACGCCTAGAC 60.179 60.000 0.00 0.00 0.00 2.59
56 57 2.860628 CGCCGCACAAGCTATCGTC 61.861 63.158 0.00 0.00 39.10 4.20
70 71 2.165301 GGAATCTCGACCAACGCCG 61.165 63.158 0.00 0.00 42.26 6.46
75 76 1.616865 ACTTGACGGAATCTCGACCAA 59.383 47.619 0.00 0.00 0.00 3.67
93 94 0.392729 CGAGTAGAGGGTCGTCCACT 60.393 60.000 0.04 2.25 39.77 4.00
95 96 0.392193 GTCGAGTAGAGGGTCGTCCA 60.392 60.000 0.04 0.00 37.46 4.02
101 102 1.380112 GGCCTGTCGAGTAGAGGGT 60.380 63.158 0.00 0.00 39.13 4.34
105 106 2.043248 GGGGGCCTGTCGAGTAGA 60.043 66.667 0.84 0.00 0.00 2.59
107 108 1.987855 CTTGGGGGCCTGTCGAGTA 60.988 63.158 0.84 0.00 0.00 2.59
128 129 1.545614 CGTTGAAGACCACCACGTCG 61.546 60.000 0.00 0.00 37.85 5.12
148 149 3.135056 GACCTCGGGTCCGGAATCG 62.135 68.421 18.24 18.24 46.19 3.34
170 171 4.778415 CGACTCACCCGCCTGTCG 62.778 72.222 0.00 0.00 44.41 4.35
173 174 4.778415 CGTCGACTCACCCGCCTG 62.778 72.222 14.70 0.00 0.00 4.85
197 198 3.709633 TCTGCATCCGGCTGTGCT 61.710 61.111 21.38 0.00 45.15 4.40
203 204 2.125512 AAGTCGTCTGCATCCGGC 60.126 61.111 0.00 1.87 45.13 6.13
205 206 0.803768 CTCCAAGTCGTCTGCATCCG 60.804 60.000 0.00 0.00 0.00 4.18
211 212 0.176680 CCCCATCTCCAAGTCGTCTG 59.823 60.000 0.00 0.00 0.00 3.51
235 236 2.677524 GCTTGGCTGCCCACATGA 60.678 61.111 17.53 0.00 41.97 3.07
237 238 1.980772 GAAGCTTGGCTGCCCACAT 60.981 57.895 17.53 0.00 41.97 3.21
238 239 2.598394 GAAGCTTGGCTGCCCACA 60.598 61.111 17.53 0.00 41.97 4.17
273 274 6.570692 TCCAGACATCCGAAAGATAACTTAC 58.429 40.000 0.00 0.00 35.05 2.34
280 281 2.472029 ACCTCCAGACATCCGAAAGAT 58.528 47.619 0.00 0.00 34.66 2.40
281 282 1.938585 ACCTCCAGACATCCGAAAGA 58.061 50.000 0.00 0.00 0.00 2.52
282 283 3.243907 GGATACCTCCAGACATCCGAAAG 60.244 52.174 0.00 0.00 41.64 2.62
283 284 2.698797 GGATACCTCCAGACATCCGAAA 59.301 50.000 0.00 0.00 41.64 3.46
284 285 2.317040 GGATACCTCCAGACATCCGAA 58.683 52.381 0.00 0.00 41.64 4.30
285 286 1.996798 GGATACCTCCAGACATCCGA 58.003 55.000 0.00 0.00 41.64 4.55
287 288 1.705873 ACGGATACCTCCAGACATCC 58.294 55.000 0.00 0.00 42.19 3.51
288 289 3.827302 ACATACGGATACCTCCAGACATC 59.173 47.826 0.00 0.00 42.19 3.06
289 290 3.574396 CACATACGGATACCTCCAGACAT 59.426 47.826 0.00 0.00 42.19 3.06
290 291 2.956333 CACATACGGATACCTCCAGACA 59.044 50.000 0.00 0.00 42.19 3.41
298 299 5.010314 TGAGTAATGACCACATACGGATACC 59.990 44.000 0.00 0.00 35.50 2.73
300 301 5.278808 GCTGAGTAATGACCACATACGGATA 60.279 44.000 0.00 0.00 35.50 2.59
307 308 3.548770 CATGGCTGAGTAATGACCACAT 58.451 45.455 0.00 0.00 38.50 3.21
308 309 2.940971 GCATGGCTGAGTAATGACCACA 60.941 50.000 0.00 0.00 32.13 4.17
314 315 1.600957 CTTCCGCATGGCTGAGTAATG 59.399 52.381 0.00 0.00 34.14 1.90
329 330 2.487934 CCATATGCTTCCTGACTTCCG 58.512 52.381 0.00 0.00 0.00 4.30
356 357 0.392461 TATCTTCCAGCGGTTGCACC 60.392 55.000 0.00 0.00 46.23 5.01
364 365 6.634805 ACACATATCCTATTATCTTCCAGCG 58.365 40.000 0.00 0.00 0.00 5.18
369 370 9.944376 TGCCTAAACACATATCCTATTATCTTC 57.056 33.333 0.00 0.00 0.00 2.87
401 444 3.376859 TGCTACAATCGGCAAACATAAGG 59.623 43.478 0.00 0.00 35.40 2.69
403 446 5.574891 AATGCTACAATCGGCAAACATAA 57.425 34.783 0.00 0.00 41.90 1.90
407 450 6.885735 AATAAAATGCTACAATCGGCAAAC 57.114 33.333 0.00 0.00 41.90 2.93
420 463 9.715121 AACTCAATGTCATCAAAATAAAATGCT 57.285 25.926 0.00 0.00 0.00 3.79
428 471 8.361889 TGAATCACAACTCAATGTCATCAAAAT 58.638 29.630 0.00 0.00 0.00 1.82
429 472 7.714703 TGAATCACAACTCAATGTCATCAAAA 58.285 30.769 0.00 0.00 0.00 2.44
432 475 7.825761 ACTATGAATCACAACTCAATGTCATCA 59.174 33.333 0.00 0.00 0.00 3.07
433 476 8.206325 ACTATGAATCACAACTCAATGTCATC 57.794 34.615 0.00 0.00 0.00 2.92
434 477 8.571461 AACTATGAATCACAACTCAATGTCAT 57.429 30.769 0.00 0.00 0.00 3.06
435 478 7.984422 AACTATGAATCACAACTCAATGTCA 57.016 32.000 0.00 0.00 0.00 3.58
439 482 9.793252 GCAATTAACTATGAATCACAACTCAAT 57.207 29.630 0.00 0.00 0.00 2.57
484 545 0.800631 CATCAAGCGATGCACACACT 59.199 50.000 0.00 0.00 42.54 3.55
485 546 3.301352 CATCAAGCGATGCACACAC 57.699 52.632 0.00 0.00 42.54 3.82
494 555 1.746615 GAGCCTTGGCATCAAGCGA 60.747 57.895 14.54 0.00 46.69 4.93
503 564 4.475135 GTCTCCCCGAGCCTTGGC 62.475 72.222 2.97 2.97 0.00 4.52
504 565 3.787001 GGTCTCCCCGAGCCTTGG 61.787 72.222 0.00 0.00 34.06 3.61
514 575 5.607939 TTTTTCAAAAAGAAGGGTCTCCC 57.392 39.130 0.00 0.00 45.90 4.30
536 597 2.752903 ACGAACAAGGAGCTGTGTTTTT 59.247 40.909 8.09 0.00 38.07 1.94
537 598 2.365582 ACGAACAAGGAGCTGTGTTTT 58.634 42.857 8.09 0.00 38.07 2.43
538 599 2.038387 ACGAACAAGGAGCTGTGTTT 57.962 45.000 8.09 0.00 38.07 2.83
549 610 6.255887 AGAGTGAAGTGAAAGTTACGAACAAG 59.744 38.462 0.00 0.00 0.00 3.16
556 617 7.442666 AGAATGGAAGAGTGAAGTGAAAGTTAC 59.557 37.037 0.00 0.00 0.00 2.50
563 624 6.213397 TGGAATAGAATGGAAGAGTGAAGTGA 59.787 38.462 0.00 0.00 0.00 3.41
567 628 6.874278 TCTGGAATAGAATGGAAGAGTGAA 57.126 37.500 0.00 0.00 30.84 3.18
636 698 2.093500 TGTCAGCTGTACTATGCCCTTG 60.093 50.000 14.67 0.00 0.00 3.61
643 705 6.015350 ACCGCTATAATTGTCAGCTGTACTAT 60.015 38.462 14.67 10.00 32.00 2.12
716 778 4.388499 GACGCGATGGGTGGGTGT 62.388 66.667 15.93 0.00 32.10 4.16
811 873 4.335416 TCACAGCTAATGGAAGAAAAGGG 58.665 43.478 0.00 0.00 0.00 3.95
822 884 6.128715 CGCTGGTATAATCTTCACAGCTAATG 60.129 42.308 11.93 0.00 46.58 1.90
835 897 0.250295 TGGGCAGCGCTGGTATAATC 60.250 55.000 36.47 18.80 0.00 1.75
859 941 2.903547 CGGTGTGTTTGGGAAGGCG 61.904 63.158 0.00 0.00 0.00 5.52
902 984 4.383861 TGTGCTCTGCCGCTCCTG 62.384 66.667 0.00 0.00 0.00 3.86
945 1033 3.781770 GAGACGGAGGCGATGGCTG 62.782 68.421 0.00 0.00 38.98 4.85
959 1047 2.751806 CTGGCCAAAGATTTGAGGAGAC 59.248 50.000 7.01 0.00 40.55 3.36
978 1066 2.137523 GTTGCCCTGACAAAAATGCTG 58.862 47.619 0.00 0.00 0.00 4.41
1059 1151 4.397103 ACGATGAACAATGTCGTAGGAGTA 59.603 41.667 0.00 0.00 45.64 2.59
1097 1192 5.443185 AAGGAATGATCACACAAACACAG 57.557 39.130 0.00 0.00 0.00 3.66
1100 1195 6.533730 ACTCTAAGGAATGATCACACAAACA 58.466 36.000 0.00 0.00 0.00 2.83
1106 1201 6.586344 GGATCAACTCTAAGGAATGATCACA 58.414 40.000 14.00 0.00 41.56 3.58
1107 1202 5.694006 CGGATCAACTCTAAGGAATGATCAC 59.306 44.000 14.00 5.06 41.56 3.06
1113 1208 5.839063 TCCATACGGATCAACTCTAAGGAAT 59.161 40.000 0.00 0.00 35.91 3.01
1153 1248 7.440556 CAGACCTTCATCGTCATAGATTTCAAT 59.559 37.037 0.00 0.00 32.41 2.57
1167 1262 1.144936 GCCTCCCAGACCTTCATCG 59.855 63.158 0.00 0.00 0.00 3.84
1450 1545 4.803426 GCAGGCGACCTCCACGAG 62.803 72.222 0.00 0.00 0.00 4.18
1596 1691 9.934190 CAAGAAGAAAGAAAGAAAGAAAGAGAG 57.066 33.333 0.00 0.00 0.00 3.20
1600 1695 9.934190 CTCTCAAGAAGAAAGAAAGAAAGAAAG 57.066 33.333 0.00 0.00 32.23 2.62
1604 1699 6.261826 TGGCTCTCAAGAAGAAAGAAAGAAAG 59.738 38.462 0.00 0.00 32.23 2.62
1605 1700 6.122277 TGGCTCTCAAGAAGAAAGAAAGAAA 58.878 36.000 0.00 0.00 32.23 2.52
1607 1702 5.296151 TGGCTCTCAAGAAGAAAGAAAGA 57.704 39.130 0.00 0.00 32.23 2.52
1608 1703 5.106237 CCATGGCTCTCAAGAAGAAAGAAAG 60.106 44.000 0.00 0.00 32.23 2.62
1609 1704 4.763793 CCATGGCTCTCAAGAAGAAAGAAA 59.236 41.667 0.00 0.00 32.23 2.52
1610 1705 4.330250 CCATGGCTCTCAAGAAGAAAGAA 58.670 43.478 0.00 0.00 32.23 2.52
1611 1706 3.871463 GCCATGGCTCTCAAGAAGAAAGA 60.871 47.826 29.98 0.00 38.26 2.52
1612 1707 2.422832 GCCATGGCTCTCAAGAAGAAAG 59.577 50.000 29.98 0.00 38.26 2.62
1613 1708 2.440409 GCCATGGCTCTCAAGAAGAAA 58.560 47.619 29.98 0.00 38.26 2.52
1646 1745 3.428870 CACAAACACGTACATCAGACTCC 59.571 47.826 0.00 0.00 0.00 3.85
1793 1892 2.232298 CTCCTCGTTCTCCACCAGCC 62.232 65.000 0.00 0.00 0.00 4.85
1809 1908 0.325671 TGAGGATCCTGACCACCTCC 60.326 60.000 22.02 1.12 45.61 4.30
1845 1944 1.079750 GAAGGTCTGGACGAGGTGC 60.080 63.158 0.00 0.00 0.00 5.01
1897 1996 1.045350 TCGCTTCCCAGATCCTCCTG 61.045 60.000 0.00 0.00 0.00 3.86
2139 2324 1.413767 CGATCGCGTCCTTGAAGTGG 61.414 60.000 5.77 0.00 0.00 4.00
2155 2340 1.167155 CCGACGATGAGGGAGACGAT 61.167 60.000 0.00 0.00 0.00 3.73
2163 2348 1.278238 GTTACTTGCCGACGATGAGG 58.722 55.000 0.00 0.00 0.00 3.86
2182 2367 7.201291 CGTCCGTAATAATGTTGTATCGTATGG 60.201 40.741 0.00 0.00 0.00 2.74
2184 2369 6.306356 GCGTCCGTAATAATGTTGTATCGTAT 59.694 38.462 0.00 0.00 0.00 3.06
2185 2370 5.624900 GCGTCCGTAATAATGTTGTATCGTA 59.375 40.000 0.00 0.00 0.00 3.43
2186 2371 4.442073 GCGTCCGTAATAATGTTGTATCGT 59.558 41.667 0.00 0.00 0.00 3.73
2187 2372 4.430703 CGCGTCCGTAATAATGTTGTATCG 60.431 45.833 0.00 0.00 0.00 2.92
2188 2373 4.143473 CCGCGTCCGTAATAATGTTGTATC 60.143 45.833 4.92 0.00 0.00 2.24
2191 2376 1.928503 CCGCGTCCGTAATAATGTTGT 59.071 47.619 4.92 0.00 0.00 3.32
2192 2377 2.195096 TCCGCGTCCGTAATAATGTTG 58.805 47.619 4.92 0.00 0.00 3.33
2197 2382 0.381801 GTCCTCCGCGTCCGTAATAA 59.618 55.000 4.92 0.00 0.00 1.40
2239 2444 1.676006 CCAGGAAGAAAAACACACGCT 59.324 47.619 0.00 0.00 0.00 5.07
2268 2473 3.002862 ACATACAAACGCACACACGAAAT 59.997 39.130 0.00 0.00 36.70 2.17
2270 2475 1.934525 ACATACAAACGCACACACGAA 59.065 42.857 0.00 0.00 36.70 3.85
2281 2486 6.246332 CGACAACGATTCATCAACATACAAAC 59.754 38.462 0.00 0.00 42.66 2.93
2313 2518 0.743345 GCCTAAGCACCCTTACACGG 60.743 60.000 0.00 0.00 39.53 4.94
2315 2520 0.618981 AGGCCTAAGCACCCTTACAC 59.381 55.000 1.29 0.00 42.56 2.90
2320 2525 0.618981 GTACAAGGCCTAAGCACCCT 59.381 55.000 5.16 0.00 42.56 4.34
2321 2526 0.326927 TGTACAAGGCCTAAGCACCC 59.673 55.000 5.16 0.00 42.56 4.61
2322 2527 2.194201 TTGTACAAGGCCTAAGCACC 57.806 50.000 5.16 0.00 42.56 5.01
2323 2528 3.127030 GTCATTGTACAAGGCCTAAGCAC 59.873 47.826 15.24 3.29 42.56 4.40
2324 2529 3.244735 TGTCATTGTACAAGGCCTAAGCA 60.245 43.478 15.24 0.00 42.56 3.91
2325 2530 3.343617 TGTCATTGTACAAGGCCTAAGC 58.656 45.455 15.24 0.00 38.76 3.09
2326 2531 5.957842 TTTGTCATTGTACAAGGCCTAAG 57.042 39.130 15.24 4.24 40.29 2.18
2327 2532 5.336372 GCATTTGTCATTGTACAAGGCCTAA 60.336 40.000 15.24 7.93 40.29 2.69
2328 2533 4.157656 GCATTTGTCATTGTACAAGGCCTA 59.842 41.667 15.24 0.00 40.29 3.93
2329 2534 3.056607 GCATTTGTCATTGTACAAGGCCT 60.057 43.478 15.24 0.00 40.29 5.19
2330 2535 3.056607 AGCATTTGTCATTGTACAAGGCC 60.057 43.478 15.24 4.75 40.29 5.19
2331 2536 4.178545 AGCATTTGTCATTGTACAAGGC 57.821 40.909 15.24 10.81 40.29 4.35
2332 2537 7.144722 TCTAAGCATTTGTCATTGTACAAGG 57.855 36.000 13.96 13.96 40.29 3.61
2333 2538 7.246311 CCTCTAAGCATTTGTCATTGTACAAG 58.754 38.462 14.65 6.58 40.29 3.16
2334 2539 6.150976 CCCTCTAAGCATTTGTCATTGTACAA 59.849 38.462 11.41 11.41 37.58 2.41
2335 2540 5.647658 CCCTCTAAGCATTTGTCATTGTACA 59.352 40.000 0.00 0.00 0.00 2.90
2336 2541 5.066505 CCCCTCTAAGCATTTGTCATTGTAC 59.933 44.000 0.00 0.00 0.00 2.90
2337 2542 5.192927 CCCCTCTAAGCATTTGTCATTGTA 58.807 41.667 0.00 0.00 0.00 2.41
2338 2543 4.019174 CCCCTCTAAGCATTTGTCATTGT 58.981 43.478 0.00 0.00 0.00 2.71
2339 2544 4.019174 ACCCCTCTAAGCATTTGTCATTG 58.981 43.478 0.00 0.00 0.00 2.82
2340 2545 4.019174 CACCCCTCTAAGCATTTGTCATT 58.981 43.478 0.00 0.00 0.00 2.57
2341 2546 3.624777 CACCCCTCTAAGCATTTGTCAT 58.375 45.455 0.00 0.00 0.00 3.06
2342 2547 2.879756 GCACCCCTCTAAGCATTTGTCA 60.880 50.000 0.00 0.00 0.00 3.58
2343 2548 1.745653 GCACCCCTCTAAGCATTTGTC 59.254 52.381 0.00 0.00 0.00 3.18
2344 2549 1.355720 AGCACCCCTCTAAGCATTTGT 59.644 47.619 0.00 0.00 0.00 2.83
2345 2550 2.134789 AGCACCCCTCTAAGCATTTG 57.865 50.000 0.00 0.00 0.00 2.32
2346 2551 2.907458 AAGCACCCCTCTAAGCATTT 57.093 45.000 0.00 0.00 0.00 2.32
2347 2552 4.316025 TTTAAGCACCCCTCTAAGCATT 57.684 40.909 0.00 0.00 0.00 3.56
2348 2553 4.316025 TTTTAAGCACCCCTCTAAGCAT 57.684 40.909 0.00 0.00 0.00 3.79
2349 2554 3.799432 TTTTAAGCACCCCTCTAAGCA 57.201 42.857 0.00 0.00 0.00 3.91
2393 2598 2.550978 CTGTAGAAATAGGCACCGGTG 58.449 52.381 30.66 30.66 0.00 4.94
2394 2599 1.485066 CCTGTAGAAATAGGCACCGGT 59.515 52.381 0.00 0.00 0.00 5.28
2395 2600 1.760613 TCCTGTAGAAATAGGCACCGG 59.239 52.381 0.00 0.00 34.08 5.28
2396 2601 2.693591 TCTCCTGTAGAAATAGGCACCG 59.306 50.000 0.00 0.00 34.08 4.94
2397 2602 3.961408 TCTCTCCTGTAGAAATAGGCACC 59.039 47.826 0.00 0.00 34.08 5.01
2398 2603 4.498345 CGTCTCTCCTGTAGAAATAGGCAC 60.498 50.000 0.00 0.00 34.08 5.01
2399 2604 3.632604 CGTCTCTCCTGTAGAAATAGGCA 59.367 47.826 0.00 0.00 34.08 4.75
2400 2605 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
2401 2606 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
2402 2607 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
2403 2608 6.120905 ACTAAGCGTCTCTCCTGTAGAAATA 58.879 40.000 0.00 0.00 32.46 1.40
2404 2609 4.951094 ACTAAGCGTCTCTCCTGTAGAAAT 59.049 41.667 0.00 0.00 32.46 2.17
2405 2610 4.333690 ACTAAGCGTCTCTCCTGTAGAAA 58.666 43.478 0.00 0.00 32.46 2.52
2406 2611 3.952931 ACTAAGCGTCTCTCCTGTAGAA 58.047 45.455 0.00 0.00 32.46 2.10
2407 2612 3.630892 ACTAAGCGTCTCTCCTGTAGA 57.369 47.619 0.00 0.00 0.00 2.59
2408 2613 5.812652 CTTAACTAAGCGTCTCTCCTGTAG 58.187 45.833 0.00 0.00 0.00 2.74
2409 2614 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
2410 2615 4.705337 CTTAACTAAGCGTCTCTCCTGT 57.295 45.455 0.00 0.00 0.00 4.00
2422 2627 8.470040 TTGTACAGGATAAACGCTTAACTAAG 57.530 34.615 0.00 0.00 36.40 2.18
2423 2628 8.830201 TTTGTACAGGATAAACGCTTAACTAA 57.170 30.769 0.00 0.00 0.00 2.24
2425 2630 7.916914 ATTTGTACAGGATAAACGCTTAACT 57.083 32.000 0.00 0.00 0.00 2.24
2426 2631 9.698617 CTTATTTGTACAGGATAAACGCTTAAC 57.301 33.333 12.19 0.00 0.00 2.01
2427 2632 8.392612 GCTTATTTGTACAGGATAAACGCTTAA 58.607 33.333 12.19 0.00 0.00 1.85
2428 2633 7.549842 TGCTTATTTGTACAGGATAAACGCTTA 59.450 33.333 16.92 0.00 0.00 3.09
2429 2634 6.373216 TGCTTATTTGTACAGGATAAACGCTT 59.627 34.615 16.92 0.00 0.00 4.68
2430 2635 5.878116 TGCTTATTTGTACAGGATAAACGCT 59.122 36.000 16.92 0.00 0.00 5.07
2431 2636 5.963586 GTGCTTATTTGTACAGGATAAACGC 59.036 40.000 12.19 12.63 0.00 4.84
2432 2637 6.483687 GGTGCTTATTTGTACAGGATAAACG 58.516 40.000 12.19 5.96 0.00 3.60
2433 2638 6.457799 CCGGTGCTTATTTGTACAGGATAAAC 60.458 42.308 12.19 9.64 39.37 2.01
2434 2639 5.587043 CCGGTGCTTATTTGTACAGGATAAA 59.413 40.000 12.19 0.00 39.37 1.40
2435 2640 5.120399 CCGGTGCTTATTTGTACAGGATAA 58.880 41.667 11.17 11.17 39.37 1.75
2436 2641 4.162698 ACCGGTGCTTATTTGTACAGGATA 59.837 41.667 6.12 0.00 39.37 2.59
2437 2642 3.054655 ACCGGTGCTTATTTGTACAGGAT 60.055 43.478 6.12 0.00 39.37 3.24
2438 2643 2.303600 ACCGGTGCTTATTTGTACAGGA 59.696 45.455 6.12 0.00 39.37 3.86
2439 2644 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
2440 2645 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
2453 2658 4.693566 TCATACTTTTCTTAAGCACCGGTG 59.306 41.667 30.66 30.66 0.00 4.94
2454 2659 4.901868 TCATACTTTTCTTAAGCACCGGT 58.098 39.130 0.00 0.00 0.00 5.28
2455 2660 6.436843 AATCATACTTTTCTTAAGCACCGG 57.563 37.500 0.00 0.00 0.00 5.28
2473 2678 8.040727 GGGAAGGTGCTTACAAAAATAAATCAT 58.959 33.333 0.00 0.00 0.00 2.45
2474 2679 7.234577 AGGGAAGGTGCTTACAAAAATAAATCA 59.765 33.333 0.00 0.00 0.00 2.57
2475 2680 7.611770 AGGGAAGGTGCTTACAAAAATAAATC 58.388 34.615 0.00 0.00 0.00 2.17
2476 2681 7.553504 AGGGAAGGTGCTTACAAAAATAAAT 57.446 32.000 0.00 0.00 0.00 1.40
2477 2682 6.987403 AGGGAAGGTGCTTACAAAAATAAA 57.013 33.333 0.00 0.00 0.00 1.40
2478 2683 7.309560 GCTTAGGGAAGGTGCTTACAAAAATAA 60.310 37.037 0.00 0.00 32.84 1.40
2479 2684 6.152154 GCTTAGGGAAGGTGCTTACAAAAATA 59.848 38.462 0.00 0.00 32.84 1.40
2480 2685 5.047306 GCTTAGGGAAGGTGCTTACAAAAAT 60.047 40.000 0.00 0.00 32.84 1.82
2481 2686 4.279922 GCTTAGGGAAGGTGCTTACAAAAA 59.720 41.667 0.00 0.00 32.84 1.94
2482 2687 3.824443 GCTTAGGGAAGGTGCTTACAAAA 59.176 43.478 0.00 0.00 32.84 2.44
2483 2688 3.181438 TGCTTAGGGAAGGTGCTTACAAA 60.181 43.478 0.00 0.00 32.84 2.83
2484 2689 2.373836 TGCTTAGGGAAGGTGCTTACAA 59.626 45.455 0.00 0.00 32.84 2.41
2485 2690 1.982226 TGCTTAGGGAAGGTGCTTACA 59.018 47.619 0.00 0.00 32.84 2.41
2486 2691 2.357075 GTGCTTAGGGAAGGTGCTTAC 58.643 52.381 0.00 0.00 32.84 2.34
2487 2692 1.280998 GGTGCTTAGGGAAGGTGCTTA 59.719 52.381 0.00 0.00 32.84 3.09
2488 2693 0.038310 GGTGCTTAGGGAAGGTGCTT 59.962 55.000 0.00 0.00 32.84 3.91
2489 2694 0.842467 AGGTGCTTAGGGAAGGTGCT 60.842 55.000 0.00 0.00 32.84 4.40
2490 2695 0.038310 AAGGTGCTTAGGGAAGGTGC 59.962 55.000 0.00 0.00 32.84 5.01
2491 2696 2.224769 TGAAAGGTGCTTAGGGAAGGTG 60.225 50.000 0.00 0.00 32.84 4.00
2492 2697 2.062636 TGAAAGGTGCTTAGGGAAGGT 58.937 47.619 0.00 0.00 32.84 3.50
2493 2698 2.879103 TGAAAGGTGCTTAGGGAAGG 57.121 50.000 0.00 0.00 32.84 3.46
2494 2699 4.082125 ACAATGAAAGGTGCTTAGGGAAG 58.918 43.478 0.00 0.00 35.60 3.46
2495 2700 4.112634 ACAATGAAAGGTGCTTAGGGAA 57.887 40.909 0.00 0.00 0.00 3.97
2496 2701 3.806949 ACAATGAAAGGTGCTTAGGGA 57.193 42.857 0.00 0.00 0.00 4.20
2497 2702 4.331968 TGTACAATGAAAGGTGCTTAGGG 58.668 43.478 0.00 0.00 0.00 3.53
2498 2703 5.106157 CCTTGTACAATGAAAGGTGCTTAGG 60.106 44.000 9.13 0.00 36.50 2.69
2499 2704 5.619981 GCCTTGTACAATGAAAGGTGCTTAG 60.620 44.000 14.26 0.00 42.13 2.18
2500 2705 4.217550 GCCTTGTACAATGAAAGGTGCTTA 59.782 41.667 14.26 0.00 42.13 3.09
2501 2706 3.005791 GCCTTGTACAATGAAAGGTGCTT 59.994 43.478 14.26 0.00 42.13 3.91
2502 2707 2.558359 GCCTTGTACAATGAAAGGTGCT 59.442 45.455 14.26 0.00 42.13 4.40
2503 2708 2.352715 GGCCTTGTACAATGAAAGGTGC 60.353 50.000 14.26 5.47 42.13 5.01
2504 2709 3.157087 AGGCCTTGTACAATGAAAGGTG 58.843 45.455 14.26 0.00 42.13 4.00
2505 2710 3.525800 AGGCCTTGTACAATGAAAGGT 57.474 42.857 14.26 0.00 42.13 3.50
2506 2711 4.764823 TGTAAGGCCTTGTACAATGAAAGG 59.235 41.667 28.77 10.22 42.86 3.11
2507 2712 5.705441 TCTGTAAGGCCTTGTACAATGAAAG 59.295 40.000 28.77 9.80 30.11 2.62
2508 2713 5.626142 TCTGTAAGGCCTTGTACAATGAAA 58.374 37.500 28.77 0.00 30.11 2.69
2509 2714 5.235850 TCTGTAAGGCCTTGTACAATGAA 57.764 39.130 28.77 8.05 30.11 2.57
2510 2715 4.901197 TCTGTAAGGCCTTGTACAATGA 57.099 40.909 28.77 15.73 30.11 2.57
2511 2716 5.957842 TTTCTGTAAGGCCTTGTACAATG 57.042 39.130 28.77 13.74 30.11 2.82
2512 2717 6.010219 ACATTTCTGTAAGGCCTTGTACAAT 58.990 36.000 28.77 15.45 32.49 2.71
2513 2718 5.381757 ACATTTCTGTAAGGCCTTGTACAA 58.618 37.500 28.77 13.89 32.49 2.41
2514 2719 4.980573 ACATTTCTGTAAGGCCTTGTACA 58.019 39.130 28.77 22.77 32.49 2.90
2515 2720 5.959618 AACATTTCTGTAAGGCCTTGTAC 57.040 39.130 28.77 19.27 33.36 2.90
2516 2721 8.466617 TTTAAACATTTCTGTAAGGCCTTGTA 57.533 30.769 28.77 15.17 33.36 2.41
2517 2722 6.969993 TTAAACATTTCTGTAAGGCCTTGT 57.030 33.333 28.77 12.60 33.36 3.16
2518 2723 8.655651 TTTTTAAACATTTCTGTAAGGCCTTG 57.344 30.769 28.77 11.78 33.36 3.61
2540 2745 9.183368 TGCTTCAGAAAAACCCAATTTATTTTT 57.817 25.926 4.32 4.32 38.03 1.94
2541 2746 8.744568 TGCTTCAGAAAAACCCAATTTATTTT 57.255 26.923 0.00 0.00 0.00 1.82
2542 2747 8.922931 ATGCTTCAGAAAAACCCAATTTATTT 57.077 26.923 0.00 0.00 0.00 1.40
2543 2748 7.331687 CGATGCTTCAGAAAAACCCAATTTATT 59.668 33.333 0.08 0.00 0.00 1.40
2544 2749 6.813152 CGATGCTTCAGAAAAACCCAATTTAT 59.187 34.615 0.08 0.00 0.00 1.40
2545 2750 6.155827 CGATGCTTCAGAAAAACCCAATTTA 58.844 36.000 0.08 0.00 0.00 1.40
2546 2751 4.990426 CGATGCTTCAGAAAAACCCAATTT 59.010 37.500 0.08 0.00 0.00 1.82
2547 2752 4.559153 CGATGCTTCAGAAAAACCCAATT 58.441 39.130 0.08 0.00 0.00 2.32
2548 2753 3.056607 CCGATGCTTCAGAAAAACCCAAT 60.057 43.478 0.08 0.00 0.00 3.16
2549 2754 2.295909 CCGATGCTTCAGAAAAACCCAA 59.704 45.455 0.08 0.00 0.00 4.12
2550 2755 1.885887 CCGATGCTTCAGAAAAACCCA 59.114 47.619 0.08 0.00 0.00 4.51
2551 2756 1.886542 ACCGATGCTTCAGAAAAACCC 59.113 47.619 0.08 0.00 0.00 4.11
2552 2757 2.933769 CACCGATGCTTCAGAAAAACC 58.066 47.619 0.08 0.00 0.00 3.27
2565 2770 3.007940 TCCCATAGAATTAGGCACCGATG 59.992 47.826 0.00 0.00 0.00 3.84
2566 2771 3.248024 TCCCATAGAATTAGGCACCGAT 58.752 45.455 0.00 0.00 0.00 4.18
2567 2772 2.684943 TCCCATAGAATTAGGCACCGA 58.315 47.619 0.00 0.00 0.00 4.69
2568 2773 3.485463 TTCCCATAGAATTAGGCACCG 57.515 47.619 0.00 0.00 0.00 4.94
2569 2774 4.822350 GTCTTTCCCATAGAATTAGGCACC 59.178 45.833 0.00 0.00 33.44 5.01
2570 2775 4.511826 CGTCTTTCCCATAGAATTAGGCAC 59.488 45.833 0.00 0.00 33.44 5.01
2571 2776 4.703897 CGTCTTTCCCATAGAATTAGGCA 58.296 43.478 0.00 0.00 33.44 4.75
2572 2777 3.498777 GCGTCTTTCCCATAGAATTAGGC 59.501 47.826 0.00 0.00 33.44 3.93
2573 2778 4.962155 AGCGTCTTTCCCATAGAATTAGG 58.038 43.478 0.00 0.00 33.44 2.69
2574 2779 8.608844 ATTAAGCGTCTTTCCCATAGAATTAG 57.391 34.615 0.00 0.00 33.44 1.73
2575 2780 8.974060 AATTAAGCGTCTTTCCCATAGAATTA 57.026 30.769 0.00 0.00 33.44 1.40
2576 2781 7.881775 AATTAAGCGTCTTTCCCATAGAATT 57.118 32.000 0.00 0.00 33.44 2.17
2577 2782 8.974060 TTAATTAAGCGTCTTTCCCATAGAAT 57.026 30.769 0.00 0.00 33.44 2.40
2578 2783 8.671028 GTTTAATTAAGCGTCTTTCCCATAGAA 58.329 33.333 0.00 0.00 0.00 2.10
2579 2784 7.010738 CGTTTAATTAAGCGTCTTTCCCATAGA 59.989 37.037 21.87 0.00 35.60 1.98
2580 2785 7.123830 CGTTTAATTAAGCGTCTTTCCCATAG 58.876 38.462 21.87 0.00 35.60 2.23
2581 2786 7.007313 CGTTTAATTAAGCGTCTTTCCCATA 57.993 36.000 21.87 0.00 35.60 2.74
2582 2787 5.875930 CGTTTAATTAAGCGTCTTTCCCAT 58.124 37.500 21.87 0.00 35.60 4.00
2583 2788 5.285798 CGTTTAATTAAGCGTCTTTCCCA 57.714 39.130 21.87 0.00 35.60 4.37
2592 2797 8.800972 TGTACAGAATAGACGTTTAATTAAGCG 58.199 33.333 26.48 26.48 43.91 4.68
2602 2807 9.095065 GGTGATTATTTGTACAGAATAGACGTT 57.905 33.333 0.00 0.00 0.00 3.99
2603 2808 7.434307 CGGTGATTATTTGTACAGAATAGACGT 59.566 37.037 0.00 0.00 0.00 4.34
2604 2809 7.096189 CCGGTGATTATTTGTACAGAATAGACG 60.096 40.741 0.00 3.67 0.00 4.18
2605 2810 7.709613 ACCGGTGATTATTTGTACAGAATAGAC 59.290 37.037 6.12 3.60 0.00 2.59
2606 2811 7.788026 ACCGGTGATTATTTGTACAGAATAGA 58.212 34.615 6.12 0.00 0.00 1.98
2607 2812 8.975439 GTACCGGTGATTATTTGTACAGAATAG 58.025 37.037 19.93 0.00 31.31 1.73
2608 2813 8.698210 AGTACCGGTGATTATTTGTACAGAATA 58.302 33.333 19.93 1.50 32.92 1.75
2609 2814 7.562135 AGTACCGGTGATTATTTGTACAGAAT 58.438 34.615 19.93 2.44 32.92 2.40
2610 2815 6.938507 AGTACCGGTGATTATTTGTACAGAA 58.061 36.000 19.93 0.00 32.92 3.02
2611 2816 6.534475 AGTACCGGTGATTATTTGTACAGA 57.466 37.500 19.93 0.00 32.92 3.41
2612 2817 8.706492 TTAAGTACCGGTGATTATTTGTACAG 57.294 34.615 19.93 0.00 32.92 2.74
2613 2818 9.499479 TTTTAAGTACCGGTGATTATTTGTACA 57.501 29.630 19.93 0.00 32.92 2.90
2637 2842 8.027189 GCTTAGAGAAATAAACCGGATGTTTTT 58.973 33.333 9.46 0.00 44.80 1.94
2638 2843 7.175990 TGCTTAGAGAAATAAACCGGATGTTTT 59.824 33.333 9.46 0.00 44.80 2.43
2640 2845 6.093633 GTGCTTAGAGAAATAAACCGGATGTT 59.906 38.462 9.46 1.11 39.43 2.71
2641 2846 5.585047 GTGCTTAGAGAAATAAACCGGATGT 59.415 40.000 9.46 0.00 0.00 3.06
2642 2847 5.817816 AGTGCTTAGAGAAATAAACCGGATG 59.182 40.000 9.46 0.00 0.00 3.51
2643 2848 5.990668 AGTGCTTAGAGAAATAAACCGGAT 58.009 37.500 9.46 0.00 0.00 4.18
2644 2849 5.416271 AGTGCTTAGAGAAATAAACCGGA 57.584 39.130 9.46 0.00 0.00 5.14
2645 2850 6.496338 AAAGTGCTTAGAGAAATAAACCGG 57.504 37.500 0.00 0.00 0.00 5.28
2646 2851 8.290325 AGAAAAAGTGCTTAGAGAAATAAACCG 58.710 33.333 0.00 0.00 0.00 4.44
2651 2856 9.502091 TGCTTAGAAAAAGTGCTTAGAGAAATA 57.498 29.630 0.00 0.00 0.00 1.40
2652 2857 8.396272 TGCTTAGAAAAAGTGCTTAGAGAAAT 57.604 30.769 0.00 0.00 0.00 2.17
2653 2858 7.801716 TGCTTAGAAAAAGTGCTTAGAGAAA 57.198 32.000 0.00 0.00 0.00 2.52
2654 2859 7.880195 AGATGCTTAGAAAAAGTGCTTAGAGAA 59.120 33.333 0.00 0.00 0.00 2.87
2655 2860 7.390027 AGATGCTTAGAAAAAGTGCTTAGAGA 58.610 34.615 0.00 0.00 0.00 3.10
2656 2861 7.608308 AGATGCTTAGAAAAAGTGCTTAGAG 57.392 36.000 0.00 0.00 0.00 2.43
2657 2862 7.119846 GGAAGATGCTTAGAAAAAGTGCTTAGA 59.880 37.037 0.00 0.00 0.00 2.10
2658 2863 7.094634 TGGAAGATGCTTAGAAAAAGTGCTTAG 60.095 37.037 0.00 0.00 0.00 2.18
2659 2864 6.714810 TGGAAGATGCTTAGAAAAAGTGCTTA 59.285 34.615 0.00 0.00 0.00 3.09
2660 2865 5.536161 TGGAAGATGCTTAGAAAAAGTGCTT 59.464 36.000 0.00 0.00 0.00 3.91
2661 2866 5.072741 TGGAAGATGCTTAGAAAAAGTGCT 58.927 37.500 0.00 0.00 0.00 4.40
2662 2867 5.376854 TGGAAGATGCTTAGAAAAAGTGC 57.623 39.130 0.00 0.00 0.00 4.40
2670 2875 9.561069 GGTCTTTTATAATGGAAGATGCTTAGA 57.439 33.333 2.28 0.00 32.59 2.10
2671 2876 9.566432 AGGTCTTTTATAATGGAAGATGCTTAG 57.434 33.333 2.28 0.00 32.59 2.18
2673 2878 9.920946 TTAGGTCTTTTATAATGGAAGATGCTT 57.079 29.630 2.28 0.00 32.59 3.91
2674 2879 9.343539 GTTAGGTCTTTTATAATGGAAGATGCT 57.656 33.333 2.28 0.00 32.59 3.79
2675 2880 9.120538 TGTTAGGTCTTTTATAATGGAAGATGC 57.879 33.333 2.28 0.00 32.59 3.91
2681 2886 9.249053 TGCAAATGTTAGGTCTTTTATAATGGA 57.751 29.630 0.00 0.00 0.00 3.41
2682 2887 9.520204 CTGCAAATGTTAGGTCTTTTATAATGG 57.480 33.333 0.00 0.00 0.00 3.16
2683 2888 9.023967 GCTGCAAATGTTAGGTCTTTTATAATG 57.976 33.333 0.00 0.00 0.00 1.90
2684 2889 8.971073 AGCTGCAAATGTTAGGTCTTTTATAAT 58.029 29.630 1.02 0.00 0.00 1.28
2685 2890 8.243426 CAGCTGCAAATGTTAGGTCTTTTATAA 58.757 33.333 0.00 0.00 0.00 0.98
2686 2891 7.609918 TCAGCTGCAAATGTTAGGTCTTTTATA 59.390 33.333 9.47 0.00 0.00 0.98
2687 2892 6.434028 TCAGCTGCAAATGTTAGGTCTTTTAT 59.566 34.615 9.47 0.00 0.00 1.40
2688 2893 5.767665 TCAGCTGCAAATGTTAGGTCTTTTA 59.232 36.000 9.47 0.00 0.00 1.52
2689 2894 4.584325 TCAGCTGCAAATGTTAGGTCTTTT 59.416 37.500 9.47 0.00 0.00 2.27
2690 2895 4.144297 TCAGCTGCAAATGTTAGGTCTTT 58.856 39.130 9.47 0.00 0.00 2.52
2691 2896 3.754965 TCAGCTGCAAATGTTAGGTCTT 58.245 40.909 9.47 0.00 0.00 3.01
2692 2897 3.341823 CTCAGCTGCAAATGTTAGGTCT 58.658 45.455 9.47 0.00 0.00 3.85
2693 2898 2.421424 CCTCAGCTGCAAATGTTAGGTC 59.579 50.000 9.47 0.00 0.00 3.85
2694 2899 2.224867 ACCTCAGCTGCAAATGTTAGGT 60.225 45.455 9.47 11.26 0.00 3.08
2695 2900 2.421424 GACCTCAGCTGCAAATGTTAGG 59.579 50.000 9.47 10.56 0.00 2.69
2696 2901 2.094894 CGACCTCAGCTGCAAATGTTAG 59.905 50.000 9.47 0.00 0.00 2.34
2697 2902 2.076100 CGACCTCAGCTGCAAATGTTA 58.924 47.619 9.47 0.00 0.00 2.41
2722 2927 0.541998 TGATCCCCGATCAGCCGTAT 60.542 55.000 0.16 0.00 43.11 3.06
2723 2928 1.152631 TGATCCCCGATCAGCCGTA 60.153 57.895 0.16 0.00 43.11 4.02
2724 2929 2.443952 TGATCCCCGATCAGCCGT 60.444 61.111 0.16 0.00 43.11 5.68
2753 2958 4.789012 TGGAACAGAAAGATCCAAATGC 57.211 40.909 0.00 0.00 45.17 3.56
2769 2974 2.320745 ATAACGACCGGGAATGGAAC 57.679 50.000 6.32 0.00 0.00 3.62
2777 2982 1.202440 TCCATCGAAATAACGACCGGG 60.202 52.381 6.32 0.00 44.84 5.73
2831 3036 2.540515 GCGCTTTGCTGACACTATCTA 58.459 47.619 0.00 0.00 41.73 1.98
2832 3037 1.363744 GCGCTTTGCTGACACTATCT 58.636 50.000 0.00 0.00 41.73 1.98
2896 3102 4.070630 AGATCAAGGAGCATTACTGAGC 57.929 45.455 0.00 0.00 0.00 4.26
2897 3103 4.272991 GCAAGATCAAGGAGCATTACTGAG 59.727 45.833 0.00 0.00 0.00 3.35
2898 3104 4.194640 GCAAGATCAAGGAGCATTACTGA 58.805 43.478 0.00 0.00 0.00 3.41
2923 3129 8.314021 ACAAATTTTTAGGAAAAGGCCTAGATG 58.686 33.333 5.16 0.00 41.34 2.90
2969 3175 9.831737 GGCAACTTACATATAGCTAAAATGATG 57.168 33.333 20.50 11.71 0.00 3.07
3013 3220 2.213499 ACTCGTCAGAAAGTTGGCTTG 58.787 47.619 0.00 0.00 34.71 4.01
3021 3228 4.446051 GGTCAGAAAAGACTCGTCAGAAAG 59.554 45.833 0.00 0.00 38.57 2.62
3022 3229 4.142026 TGGTCAGAAAAGACTCGTCAGAAA 60.142 41.667 0.00 0.00 38.57 2.52
3023 3230 3.383505 TGGTCAGAAAAGACTCGTCAGAA 59.616 43.478 0.00 0.00 38.57 3.02
3024 3231 2.956333 TGGTCAGAAAAGACTCGTCAGA 59.044 45.455 0.00 0.00 38.57 3.27
3025 3232 3.371102 TGGTCAGAAAAGACTCGTCAG 57.629 47.619 0.00 0.00 38.57 3.51
3026 3233 4.058124 CAATGGTCAGAAAAGACTCGTCA 58.942 43.478 0.00 0.00 38.57 4.35
3027 3234 4.307432 TCAATGGTCAGAAAAGACTCGTC 58.693 43.478 0.00 0.00 38.57 4.20
3028 3235 4.336889 TCAATGGTCAGAAAAGACTCGT 57.663 40.909 0.00 0.00 38.57 4.18
3029 3236 6.102663 AGTATCAATGGTCAGAAAAGACTCG 58.897 40.000 0.00 0.00 38.57 4.18
3030 3237 7.913674 AAGTATCAATGGTCAGAAAAGACTC 57.086 36.000 0.00 0.00 38.57 3.36
3031 3238 8.571336 CAAAAGTATCAATGGTCAGAAAAGACT 58.429 33.333 0.00 0.00 38.57 3.24
3032 3239 8.352942 ACAAAAGTATCAATGGTCAGAAAAGAC 58.647 33.333 0.00 0.00 37.80 3.01
3033 3240 8.463930 ACAAAAGTATCAATGGTCAGAAAAGA 57.536 30.769 0.00 0.00 0.00 2.52
3034 3241 8.352201 TGACAAAAGTATCAATGGTCAGAAAAG 58.648 33.333 0.00 0.00 30.99 2.27
3051 3258 5.811399 TCAACACGAATCTTGACAAAAGT 57.189 34.783 0.00 0.00 0.00 2.66
3077 3284 7.455641 TCAACACCTTCTAAAAAGTGTCAAA 57.544 32.000 0.00 0.00 38.75 2.69
3079 3286 7.639113 ATTCAACACCTTCTAAAAAGTGTCA 57.361 32.000 0.00 0.00 38.75 3.58
3080 3287 8.926715 AAATTCAACACCTTCTAAAAAGTGTC 57.073 30.769 0.00 0.00 38.75 3.67
3081 3288 9.719355 AAAAATTCAACACCTTCTAAAAAGTGT 57.281 25.926 0.00 0.00 40.88 3.55
3085 3292 9.936759 AGTCAAAAATTCAACACCTTCTAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
3095 3325 6.526674 ACAAAGACGAGTCAAAAATTCAACAC 59.473 34.615 5.99 0.00 0.00 3.32
3112 3342 1.060713 ACTGATCGCGAACAAAGACG 58.939 50.000 19.90 10.37 0.00 4.18
3116 3346 4.481930 AATTCAACTGATCGCGAACAAA 57.518 36.364 19.90 11.58 0.00 2.83
3122 3352 5.229887 CCCAATAAAAATTCAACTGATCGCG 59.770 40.000 0.00 0.00 0.00 5.87
3123 3353 5.005682 GCCCAATAAAAATTCAACTGATCGC 59.994 40.000 0.00 0.00 0.00 4.58
3126 3356 7.678837 TCAAGCCCAATAAAAATTCAACTGAT 58.321 30.769 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.