Multiple sequence alignment - TraesCS1A01G239400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G239400 chr1A 100.000 3590 0 0 1 3590 426727853 426731442 0.000000e+00 6630.0
1 TraesCS1A01G239400 chr1A 83.784 148 16 5 3440 3586 386475624 386475764 2.250000e-27 134.0
2 TraesCS1A01G239400 chr1A 100.000 34 0 0 2701 2734 532787493 532787526 2.990000e-06 63.9
3 TraesCS1A01G239400 chr1A 97.143 35 1 0 2701 2735 21627411 21627377 3.870000e-05 60.2
4 TraesCS1A01G239400 chr1D 94.482 2193 81 18 896 3053 329500031 329502218 0.000000e+00 3343.0
5 TraesCS1A01G239400 chr1D 93.561 497 23 2 1 497 108828024 108827537 0.000000e+00 732.0
6 TraesCS1A01G239400 chr1D 92.669 341 20 5 3085 3422 329507576 329507914 1.500000e-133 486.0
7 TraesCS1A01G239400 chr1D 82.209 163 21 3 3429 3590 306222256 306222411 2.250000e-27 134.0
8 TraesCS1A01G239400 chr1D 91.379 58 5 0 3493 3550 371094772 371094829 2.970000e-11 80.5
9 TraesCS1A01G239400 chr1D 100.000 34 0 0 2701 2734 435280667 435280700 2.990000e-06 63.9
10 TraesCS1A01G239400 chr1D 100.000 29 0 0 2666 2694 461193945 461193973 2.000000e-03 54.7
11 TraesCS1A01G239400 chr1D 96.875 32 1 0 2668 2699 461204758 461204789 2.000000e-03 54.7
12 TraesCS1A01G239400 chr1B 95.558 1801 65 6 885 2674 444344388 444346184 0.000000e+00 2868.0
13 TraesCS1A01G239400 chr1B 92.740 854 53 2 1 854 394860120 394860964 0.000000e+00 1225.0
14 TraesCS1A01G239400 chr1B 92.732 853 53 2 1 853 518267752 518268595 0.000000e+00 1223.0
15 TraesCS1A01G239400 chr1B 91.153 373 24 7 2667 3034 444347060 444347428 6.920000e-137 497.0
16 TraesCS1A01G239400 chr1B 87.977 341 35 6 3085 3422 444380875 444381212 7.220000e-107 398.0
17 TraesCS1A01G239400 chr1B 81.250 432 42 20 1 429 341134685 341134290 2.690000e-81 313.0
18 TraesCS1A01G239400 chr1B 82.192 146 18 4 3446 3590 46831650 46831788 6.300000e-23 119.0
19 TraesCS1A01G239400 chr1B 80.667 150 20 4 3441 3589 325390252 325390393 1.360000e-19 108.0
20 TraesCS1A01G239400 chr1B 86.458 96 13 0 3495 3590 90309721 90309816 4.900000e-19 106.0
21 TraesCS1A01G239400 chr1B 97.143 35 1 0 2700 2734 588512285 588512319 3.870000e-05 60.2
22 TraesCS1A01G239400 chr1B 100.000 29 0 0 2666 2694 633924252 633924280 2.000000e-03 54.7
23 TraesCS1A01G239400 chr1B 100.000 28 0 0 2668 2695 133809708 133809735 6.000000e-03 52.8
24 TraesCS1A01G239400 chr7A 93.256 860 49 2 1 860 505021662 505022512 0.000000e+00 1258.0
25 TraesCS1A01G239400 chr7A 82.237 152 17 6 2454 2595 106729590 106729741 4.870000e-24 122.0
26 TraesCS1A01G239400 chr7A 96.970 33 1 0 2663 2695 150122149 150122181 5.010000e-04 56.5
27 TraesCS1A01G239400 chr2A 92.618 867 54 3 1 866 105597775 105598632 0.000000e+00 1238.0
28 TraesCS1A01G239400 chr6B 92.683 861 53 3 1 860 368565587 368564736 0.000000e+00 1232.0
29 TraesCS1A01G239400 chr6B 92.614 853 54 2 1 853 694663969 694663126 0.000000e+00 1218.0
30 TraesCS1A01G239400 chr6B 96.970 33 1 0 2667 2699 3715375 3715343 5.010000e-04 56.5
31 TraesCS1A01G239400 chr4A 92.640 856 53 4 1 856 719051057 719051902 0.000000e+00 1223.0
32 TraesCS1A01G239400 chr4A 92.614 853 54 2 2 854 93968943 93969786 0.000000e+00 1218.0
33 TraesCS1A01G239400 chr4A 94.165 497 20 2 1 497 617674567 617674080 0.000000e+00 749.0
34 TraesCS1A01G239400 chr4B 92.614 853 53 1 1 853 497110139 497110981 0.000000e+00 1218.0
35 TraesCS1A01G239400 chr4B 83.444 151 16 5 3441 3590 64076372 64076514 8.090000e-27 132.0
36 TraesCS1A01G239400 chr2B 92.200 859 57 3 1 859 17154211 17155059 0.000000e+00 1206.0
37 TraesCS1A01G239400 chr6D 94.970 497 16 2 1 497 38239942 38240429 0.000000e+00 771.0
38 TraesCS1A01G239400 chr6D 88.811 429 26 10 1 429 160966420 160966014 1.150000e-139 507.0
39 TraesCS1A01G239400 chr6D 80.132 151 22 4 3441 3590 428261433 428261290 4.900000e-19 106.0
40 TraesCS1A01G239400 chr6D 89.706 68 7 0 3493 3560 381008013 381007946 1.780000e-13 87.9
41 TraesCS1A01G239400 chr6D 83.516 91 14 1 3492 3581 11906724 11906634 2.300000e-12 84.2
42 TraesCS1A01G239400 chr6D 91.228 57 5 0 3494 3550 13150352 13150408 1.070000e-10 78.7
43 TraesCS1A01G239400 chr6D 76.923 143 24 7 3441 3581 46612034 46611899 4.970000e-09 73.1
44 TraesCS1A01G239400 chr6D 85.294 68 10 0 3493 3560 409832483 409832416 1.790000e-08 71.3
45 TraesCS1A01G239400 chr3D 94.378 498 18 3 1 497 583585709 583586197 0.000000e+00 756.0
46 TraesCS1A01G239400 chr3D 88.759 427 26 10 1 427 278813950 278814354 1.490000e-138 503.0
47 TraesCS1A01G239400 chr3D 86.957 92 12 0 3498 3589 459902647 459902556 1.760000e-18 104.0
48 TraesCS1A01G239400 chr3D 79.577 142 21 4 3441 3581 562513975 562514109 1.060000e-15 95.3
49 TraesCS1A01G239400 chr3D 86.047 86 12 0 3496 3581 342812820 342812735 3.820000e-15 93.5
50 TraesCS1A01G239400 chr5D 94.343 495 19 2 1 495 128586482 128585997 0.000000e+00 750.0
51 TraesCS1A01G239400 chr5D 87.936 373 45 0 1780 2152 25353956 25353584 1.180000e-119 440.0
52 TraesCS1A01G239400 chr5D 83.448 145 16 4 3447 3590 318867311 318867448 1.050000e-25 128.0
53 TraesCS1A01G239400 chr5D 81.481 135 17 4 3448 3581 396921060 396921187 1.760000e-18 104.0
54 TraesCS1A01G239400 chr5D 79.470 151 23 4 3441 3590 76031160 76031017 2.280000e-17 100.0
55 TraesCS1A01G239400 chr5D 94.643 56 3 0 3495 3550 413434643 413434698 1.780000e-13 87.9
56 TraesCS1A01G239400 chr7D 81.875 160 21 4 3432 3590 628815695 628815543 1.050000e-25 128.0
57 TraesCS1A01G239400 chr7D 85.106 94 14 0 3496 3589 136251966 136251873 2.950000e-16 97.1
58 TraesCS1A01G239400 chr7D 81.148 122 15 4 3440 3560 136414278 136414392 1.370000e-14 91.6
59 TraesCS1A01G239400 chr7D 90.909 44 1 1 2652 2695 149709680 149709720 5.010000e-04 56.5
60 TraesCS1A01G239400 chr3A 82.069 145 18 3 3447 3590 111881162 111881025 2.260000e-22 117.0
61 TraesCS1A01G239400 chr2D 87.234 94 12 0 3497 3590 27268950 27268857 1.360000e-19 108.0
62 TraesCS1A01G239400 chr5B 80.851 141 19 3 3442 3581 102242259 102242392 1.760000e-18 104.0
63 TraesCS1A01G239400 chr4D 83.721 86 14 0 3494 3579 460649142 460649057 8.260000e-12 82.4
64 TraesCS1A01G239400 chr4D 80.000 120 16 4 3441 3560 478049373 478049262 8.260000e-12 82.4
65 TraesCS1A01G239400 chr4D 91.379 58 5 0 3493 3550 400174128 400174071 2.970000e-11 80.5
66 TraesCS1A01G239400 chrUn 81.250 96 9 5 3446 3540 439522663 439522750 6.430000e-08 69.4
67 TraesCS1A01G239400 chr7B 100.000 30 0 0 2708 2737 376017606 376017635 5.010000e-04 56.5
68 TraesCS1A01G239400 chr6A 100.000 28 0 0 2667 2694 83606473 83606446 6.000000e-03 52.8
69 TraesCS1A01G239400 chr3B 92.105 38 2 1 2699 2735 561542841 561542804 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G239400 chr1A 426727853 426731442 3589 False 6630.0 6630 100.0000 1 3590 1 chr1A.!!$F2 3589
1 TraesCS1A01G239400 chr1D 329500031 329502218 2187 False 3343.0 3343 94.4820 896 3053 1 chr1D.!!$F2 2157
2 TraesCS1A01G239400 chr1B 444344388 444347428 3040 False 1682.5 2868 93.3555 885 3034 2 chr1B.!!$F10 2149
3 TraesCS1A01G239400 chr1B 394860120 394860964 844 False 1225.0 1225 92.7400 1 854 1 chr1B.!!$F5 853
4 TraesCS1A01G239400 chr1B 518267752 518268595 843 False 1223.0 1223 92.7320 1 853 1 chr1B.!!$F7 852
5 TraesCS1A01G239400 chr7A 505021662 505022512 850 False 1258.0 1258 93.2560 1 860 1 chr7A.!!$F3 859
6 TraesCS1A01G239400 chr2A 105597775 105598632 857 False 1238.0 1238 92.6180 1 866 1 chr2A.!!$F1 865
7 TraesCS1A01G239400 chr6B 368564736 368565587 851 True 1232.0 1232 92.6830 1 860 1 chr6B.!!$R2 859
8 TraesCS1A01G239400 chr6B 694663126 694663969 843 True 1218.0 1218 92.6140 1 853 1 chr6B.!!$R3 852
9 TraesCS1A01G239400 chr4A 719051057 719051902 845 False 1223.0 1223 92.6400 1 856 1 chr4A.!!$F2 855
10 TraesCS1A01G239400 chr4A 93968943 93969786 843 False 1218.0 1218 92.6140 2 854 1 chr4A.!!$F1 852
11 TraesCS1A01G239400 chr4B 497110139 497110981 842 False 1218.0 1218 92.6140 1 853 1 chr4B.!!$F2 852
12 TraesCS1A01G239400 chr2B 17154211 17155059 848 False 1206.0 1206 92.2000 1 859 1 chr2B.!!$F1 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 649 0.031994 GTTGCTGTGTGGGCGAAAAT 59.968 50.0 0.00 0.0 0.0 1.82 F
1726 1739 0.729690 GAAGCTTCTCAACATCGGCC 59.270 55.0 19.44 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 1809 0.957888 GCTGTTTCTCTGGCTCACCC 60.958 60.0 0.0 0.0 33.59 4.61 R
3563 4496 0.038159 CGAAAACAGAGCCCTCTCGT 60.038 55.0 0.0 0.0 44.02 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.819582 GCAGCTACGTTAGGTACCCA 59.180 55.000 8.74 0.00 34.67 4.51
183 184 1.810151 AGTTGCCGCGTGTAATCAAAT 59.190 42.857 4.92 0.00 0.00 2.32
184 185 2.159572 AGTTGCCGCGTGTAATCAAATC 60.160 45.455 4.92 0.00 0.00 2.17
185 186 0.371989 TGCCGCGTGTAATCAAATCG 59.628 50.000 4.92 0.00 0.00 3.34
186 187 0.372334 GCCGCGTGTAATCAAATCGT 59.628 50.000 4.92 0.00 0.00 3.73
187 188 1.589320 GCCGCGTGTAATCAAATCGTA 59.411 47.619 4.92 0.00 0.00 3.43
188 189 2.029486 GCCGCGTGTAATCAAATCGTAA 59.971 45.455 4.92 0.00 0.00 3.18
189 190 3.302870 GCCGCGTGTAATCAAATCGTAAT 60.303 43.478 4.92 0.00 0.00 1.89
190 191 4.784079 GCCGCGTGTAATCAAATCGTAATT 60.784 41.667 4.92 0.00 0.00 1.40
191 192 4.664410 CCGCGTGTAATCAAATCGTAATTG 59.336 41.667 4.92 0.00 0.00 2.32
192 193 5.252583 CGCGTGTAATCAAATCGTAATTGT 58.747 37.500 0.00 0.00 0.00 2.71
206 207 0.515564 AATTGTCGTAGTTGCCGTGC 59.484 50.000 0.00 0.00 0.00 5.34
226 227 3.000727 GCGTGATTAACTACTTGCCACT 58.999 45.455 0.00 0.00 0.00 4.00
251 252 6.699575 ATGGTCAAAATAGTAGTTGCCATC 57.300 37.500 13.61 0.00 37.20 3.51
272 273 3.134985 TCTGTGTTTACCTAGTTGCCACA 59.865 43.478 0.00 0.00 0.00 4.17
277 278 2.107950 TACCTAGTTGCCACATGTGC 57.892 50.000 20.81 15.64 0.00 4.57
280 281 0.723414 CTAGTTGCCACATGTGCTCG 59.277 55.000 20.81 8.24 0.00 5.03
350 351 3.270092 TTGCCACGTACGCGCAAA 61.270 55.556 30.06 18.64 39.43 3.68
540 541 2.547007 CCATGTGTGTGTACCGAGTTGA 60.547 50.000 0.00 0.00 0.00 3.18
548 549 1.404748 TGTACCGAGTTGACACGTTCA 59.595 47.619 0.00 0.00 0.00 3.18
563 564 1.591158 CGTTCACGTAACTGCAGTTGT 59.409 47.619 36.50 25.62 38.90 3.32
590 591 3.154710 ACAAGATAGGAGTGTCGTGTGA 58.845 45.455 0.00 0.00 35.68 3.58
614 615 0.745128 AAAACAGTTCGCCCACACGA 60.745 50.000 0.00 0.00 41.04 4.35
619 620 1.447140 GTTCGCCCACACGAGCATA 60.447 57.895 0.00 0.00 44.00 3.14
648 649 0.031994 GTTGCTGTGTGGGCGAAAAT 59.968 50.000 0.00 0.00 0.00 1.82
709 710 1.244019 GGCGTGTGGGCAAAATCTCT 61.244 55.000 0.00 0.00 41.77 3.10
740 741 3.066190 CAGCCCCGTCCTACGTGA 61.066 66.667 0.00 0.00 40.58 4.35
751 752 3.135994 GTCCTACGTGACACACCAAATT 58.864 45.455 6.37 0.00 35.29 1.82
759 760 4.035792 CGTGACACACCAAATTCACCTTTA 59.964 41.667 6.37 0.00 35.89 1.85
765 766 4.399934 ACACCAAATTCACCTTTACGTGTT 59.600 37.500 0.00 0.00 31.72 3.32
768 769 6.973474 CACCAAATTCACCTTTACGTGTTAAA 59.027 34.615 0.00 0.00 35.18 1.52
797 798 3.303132 GCAAAAGACAGTGAACGACGATT 60.303 43.478 0.00 0.00 0.00 3.34
869 871 8.462143 TGTTTTCGTAAAATAAAACAGTTGCA 57.538 26.923 8.78 0.00 45.66 4.08
870 872 9.088512 TGTTTTCGTAAAATAAAACAGTTGCAT 57.911 25.926 8.78 0.00 45.66 3.96
871 873 9.562752 GTTTTCGTAAAATAAAACAGTTGCATC 57.437 29.630 0.00 0.00 42.46 3.91
872 874 8.858003 TTTCGTAAAATAAAACAGTTGCATCA 57.142 26.923 0.00 0.00 0.00 3.07
873 875 9.469807 TTTCGTAAAATAAAACAGTTGCATCAT 57.530 25.926 0.00 0.00 0.00 2.45
984 988 1.533625 TCCCAAATCGCAAGTTCCAG 58.466 50.000 0.00 0.00 39.48 3.86
1309 1322 1.225376 CTTCGCCAACTACAACCGCA 61.225 55.000 0.00 0.00 0.00 5.69
1383 1396 3.474570 GATGGCCGCCTCTGGAGT 61.475 66.667 11.61 0.00 0.00 3.85
1564 1577 1.132640 GCGTTCGACAACATCTGCC 59.867 57.895 0.00 0.00 32.14 4.85
1644 1657 3.533691 CTCTTCGCGGCGTTCGAC 61.534 66.667 22.90 0.00 42.43 4.20
1726 1739 0.729690 GAAGCTTCTCAACATCGGCC 59.270 55.000 19.44 0.00 0.00 6.13
1796 1809 1.815421 CCGTCATCGAAGCCAAGGG 60.815 63.158 0.00 0.00 39.71 3.95
1905 1918 4.473520 CTCGCCGCCATGTTCCCT 62.474 66.667 0.00 0.00 0.00 4.20
2152 2165 3.243053 TTCCCTTCAACGGGCGGA 61.243 61.111 0.00 0.00 44.30 5.54
2266 2279 1.371183 CTGTGGGGCGAGAACTTCA 59.629 57.895 0.00 0.00 0.00 3.02
2403 2416 1.730501 ACATGCAGATGAAGACGGTG 58.269 50.000 0.00 0.00 33.36 4.94
2449 2462 4.920112 TGAACGTGGTGGCACCGG 62.920 66.667 30.14 25.57 42.58 5.28
2556 2569 4.686554 AGTGATGCTAACAAGTCTTCGTTC 59.313 41.667 4.37 0.00 0.00 3.95
2662 2675 5.766174 TGGGTTTGTCCTTAGTCAAACATAC 59.234 40.000 21.58 15.17 46.98 2.39
2663 2676 6.002082 GGGTTTGTCCTTAGTCAAACATACT 58.998 40.000 21.58 0.00 46.98 2.12
2664 2677 7.163441 GGGTTTGTCCTTAGTCAAACATACTA 58.837 38.462 21.58 0.00 46.98 1.82
2843 3772 7.445121 TCAATTACTAGATGAATGCTCCGAAT 58.555 34.615 0.00 0.00 0.00 3.34
3004 3936 9.777843 GTATAAGTTGAAAATTGAAGCAAAACG 57.222 29.630 0.00 0.00 0.00 3.60
3028 3961 6.017192 CGAAAATAATCTGGGTACATGCATCA 60.017 38.462 0.00 0.00 0.00 3.07
3036 3969 5.130975 TCTGGGTACATGCATCAGACTATTT 59.869 40.000 10.18 0.00 30.58 1.40
3040 3973 8.825774 TGGGTACATGCATCAGACTATTTATAT 58.174 33.333 0.00 0.00 0.00 0.86
3072 4005 5.696260 CATGCATGTCATGTAAGCAAAAG 57.304 39.130 18.91 0.00 45.79 2.27
3073 4006 4.852134 TGCATGTCATGTAAGCAAAAGT 57.148 36.364 14.26 0.00 31.42 2.66
3074 4007 5.956068 TGCATGTCATGTAAGCAAAAGTA 57.044 34.783 14.26 0.00 31.42 2.24
3075 4008 5.941733 TGCATGTCATGTAAGCAAAAGTAG 58.058 37.500 14.26 0.00 31.42 2.57
3076 4009 5.473162 TGCATGTCATGTAAGCAAAAGTAGT 59.527 36.000 14.26 0.00 31.42 2.73
3077 4010 5.796935 GCATGTCATGTAAGCAAAAGTAGTG 59.203 40.000 14.26 0.00 0.00 2.74
3078 4011 6.348458 GCATGTCATGTAAGCAAAAGTAGTGA 60.348 38.462 14.26 0.00 0.00 3.41
3079 4012 7.627088 GCATGTCATGTAAGCAAAAGTAGTGAT 60.627 37.037 14.26 0.00 0.00 3.06
3080 4013 8.882736 CATGTCATGTAAGCAAAAGTAGTGATA 58.117 33.333 4.53 0.00 0.00 2.15
3081 4014 9.618890 ATGTCATGTAAGCAAAAGTAGTGATAT 57.381 29.630 0.00 0.00 0.00 1.63
3123 4056 9.767684 TGCACGTTTATTTTATTAATCTGACTG 57.232 29.630 0.00 0.00 0.00 3.51
3124 4057 9.769093 GCACGTTTATTTTATTAATCTGACTGT 57.231 29.630 0.00 0.00 0.00 3.55
3158 4091 6.780706 ACAATAAAAGAGTACAAGTCCACG 57.219 37.500 0.00 0.00 0.00 4.94
3159 4092 6.285990 ACAATAAAAGAGTACAAGTCCACGT 58.714 36.000 0.00 0.00 0.00 4.49
3160 4093 6.423001 ACAATAAAAGAGTACAAGTCCACGTC 59.577 38.462 0.00 0.00 0.00 4.34
3161 4094 4.667519 AAAAGAGTACAAGTCCACGTCT 57.332 40.909 0.00 0.00 0.00 4.18
3162 4095 5.779529 AAAAGAGTACAAGTCCACGTCTA 57.220 39.130 0.00 0.00 0.00 2.59
3163 4096 5.979288 AAAGAGTACAAGTCCACGTCTAT 57.021 39.130 0.00 0.00 0.00 1.98
3164 4097 4.966965 AGAGTACAAGTCCACGTCTATG 57.033 45.455 0.00 0.00 0.00 2.23
3165 4098 4.586884 AGAGTACAAGTCCACGTCTATGA 58.413 43.478 0.00 0.00 0.00 2.15
3166 4099 5.008331 AGAGTACAAGTCCACGTCTATGAA 58.992 41.667 0.00 0.00 0.00 2.57
3167 4100 5.475909 AGAGTACAAGTCCACGTCTATGAAA 59.524 40.000 0.00 0.00 0.00 2.69
3168 4101 6.153000 AGAGTACAAGTCCACGTCTATGAAAT 59.847 38.462 0.00 0.00 0.00 2.17
3169 4102 7.338703 AGAGTACAAGTCCACGTCTATGAAATA 59.661 37.037 0.00 0.00 0.00 1.40
3170 4103 7.833786 AGTACAAGTCCACGTCTATGAAATAA 58.166 34.615 0.00 0.00 0.00 1.40
3171 4104 8.308931 AGTACAAGTCCACGTCTATGAAATAAA 58.691 33.333 0.00 0.00 0.00 1.40
3172 4105 7.596749 ACAAGTCCACGTCTATGAAATAAAG 57.403 36.000 0.00 0.00 0.00 1.85
3173 4106 7.383687 ACAAGTCCACGTCTATGAAATAAAGA 58.616 34.615 0.00 0.00 0.00 2.52
3174 4107 8.041323 ACAAGTCCACGTCTATGAAATAAAGAT 58.959 33.333 0.00 0.00 0.00 2.40
3175 4108 8.331022 CAAGTCCACGTCTATGAAATAAAGATG 58.669 37.037 0.00 0.00 33.40 2.90
3176 4109 6.480320 AGTCCACGTCTATGAAATAAAGATGC 59.520 38.462 0.00 0.00 30.83 3.91
3177 4110 6.257849 GTCCACGTCTATGAAATAAAGATGCA 59.742 38.462 0.00 0.00 30.83 3.96
3178 4111 6.257849 TCCACGTCTATGAAATAAAGATGCAC 59.742 38.462 0.00 0.00 30.83 4.57
3179 4112 6.037062 CCACGTCTATGAAATAAAGATGCACA 59.963 38.462 0.00 0.00 30.83 4.57
3180 4113 6.901887 CACGTCTATGAAATAAAGATGCACAC 59.098 38.462 0.00 0.00 30.83 3.82
3181 4114 6.593770 ACGTCTATGAAATAAAGATGCACACA 59.406 34.615 0.00 0.00 30.83 3.72
3182 4115 7.119116 ACGTCTATGAAATAAAGATGCACACAA 59.881 33.333 0.00 0.00 30.83 3.33
3183 4116 8.124823 CGTCTATGAAATAAAGATGCACACAAT 58.875 33.333 0.00 0.00 0.00 2.71
3184 4117 9.443283 GTCTATGAAATAAAGATGCACACAATC 57.557 33.333 0.00 0.00 0.00 2.67
3185 4118 8.623903 TCTATGAAATAAAGATGCACACAATCC 58.376 33.333 0.00 0.00 0.00 3.01
3186 4119 6.587206 TGAAATAAAGATGCACACAATCCA 57.413 33.333 0.00 0.00 0.00 3.41
3187 4120 6.990798 TGAAATAAAGATGCACACAATCCAA 58.009 32.000 0.00 0.00 0.00 3.53
3188 4121 7.440198 TGAAATAAAGATGCACACAATCCAAA 58.560 30.769 0.00 0.00 0.00 3.28
3189 4122 8.095792 TGAAATAAAGATGCACACAATCCAAAT 58.904 29.630 0.00 0.00 0.00 2.32
3190 4123 9.585099 GAAATAAAGATGCACACAATCCAAATA 57.415 29.630 0.00 0.00 0.00 1.40
3191 4124 9.590451 AAATAAAGATGCACACAATCCAAATAG 57.410 29.630 0.00 0.00 0.00 1.73
3192 4125 6.839124 AAAGATGCACACAATCCAAATAGA 57.161 33.333 0.00 0.00 0.00 1.98
3193 4126 5.824904 AGATGCACACAATCCAAATAGAC 57.175 39.130 0.00 0.00 0.00 2.59
3194 4127 5.255687 AGATGCACACAATCCAAATAGACA 58.744 37.500 0.00 0.00 0.00 3.41
3195 4128 4.764679 TGCACACAATCCAAATAGACAC 57.235 40.909 0.00 0.00 0.00 3.67
3196 4129 4.140536 TGCACACAATCCAAATAGACACA 58.859 39.130 0.00 0.00 0.00 3.72
3197 4130 4.582240 TGCACACAATCCAAATAGACACAA 59.418 37.500 0.00 0.00 0.00 3.33
3198 4131 4.917415 GCACACAATCCAAATAGACACAAC 59.083 41.667 0.00 0.00 0.00 3.32
3199 4132 5.507149 GCACACAATCCAAATAGACACAACA 60.507 40.000 0.00 0.00 0.00 3.33
3200 4133 5.914635 CACACAATCCAAATAGACACAACAC 59.085 40.000 0.00 0.00 0.00 3.32
3201 4134 5.009610 ACACAATCCAAATAGACACAACACC 59.990 40.000 0.00 0.00 0.00 4.16
3202 4135 5.009510 CACAATCCAAATAGACACAACACCA 59.990 40.000 0.00 0.00 0.00 4.17
3203 4136 5.774690 ACAATCCAAATAGACACAACACCAT 59.225 36.000 0.00 0.00 0.00 3.55
3204 4137 6.945435 ACAATCCAAATAGACACAACACCATA 59.055 34.615 0.00 0.00 0.00 2.74
3205 4138 7.450014 ACAATCCAAATAGACACAACACCATAA 59.550 33.333 0.00 0.00 0.00 1.90
3206 4139 6.811253 TCCAAATAGACACAACACCATAAC 57.189 37.500 0.00 0.00 0.00 1.89
3207 4140 6.299922 TCCAAATAGACACAACACCATAACA 58.700 36.000 0.00 0.00 0.00 2.41
3208 4141 6.945435 TCCAAATAGACACAACACCATAACAT 59.055 34.615 0.00 0.00 0.00 2.71
3209 4142 7.028962 CCAAATAGACACAACACCATAACATG 58.971 38.462 0.00 0.00 0.00 3.21
3210 4143 7.309133 CCAAATAGACACAACACCATAACATGT 60.309 37.037 0.00 0.00 0.00 3.21
3211 4144 6.985188 ATAGACACAACACCATAACATGTC 57.015 37.500 0.00 0.00 36.16 3.06
3212 4145 4.072131 AGACACAACACCATAACATGTCC 58.928 43.478 0.00 0.00 36.48 4.02
3213 4146 3.818210 GACACAACACCATAACATGTCCA 59.182 43.478 0.00 0.00 30.98 4.02
3214 4147 4.211125 ACACAACACCATAACATGTCCAA 58.789 39.130 0.00 0.00 0.00 3.53
3215 4148 4.646945 ACACAACACCATAACATGTCCAAA 59.353 37.500 0.00 0.00 0.00 3.28
3216 4149 5.127845 ACACAACACCATAACATGTCCAAAA 59.872 36.000 0.00 0.00 0.00 2.44
3217 4150 6.183360 ACACAACACCATAACATGTCCAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
3218 4151 7.014711 ACACAACACCATAACATGTCCAAAATA 59.985 33.333 0.00 0.00 0.00 1.40
3219 4152 7.869937 CACAACACCATAACATGTCCAAAATAA 59.130 33.333 0.00 0.00 0.00 1.40
3220 4153 8.087750 ACAACACCATAACATGTCCAAAATAAG 58.912 33.333 0.00 0.00 0.00 1.73
3221 4154 7.775053 ACACCATAACATGTCCAAAATAAGT 57.225 32.000 0.00 0.00 0.00 2.24
3222 4155 7.826690 ACACCATAACATGTCCAAAATAAGTC 58.173 34.615 0.00 0.00 0.00 3.01
3223 4156 7.093945 ACACCATAACATGTCCAAAATAAGTCC 60.094 37.037 0.00 0.00 0.00 3.85
3224 4157 6.094881 ACCATAACATGTCCAAAATAAGTCCG 59.905 38.462 0.00 0.00 0.00 4.79
3225 4158 6.094881 CCATAACATGTCCAAAATAAGTCCGT 59.905 38.462 0.00 0.00 0.00 4.69
3226 4159 5.622770 AACATGTCCAAAATAAGTCCGTC 57.377 39.130 0.00 0.00 0.00 4.79
3227 4160 4.007659 ACATGTCCAAAATAAGTCCGTCC 58.992 43.478 0.00 0.00 0.00 4.79
3228 4161 2.690786 TGTCCAAAATAAGTCCGTCCG 58.309 47.619 0.00 0.00 0.00 4.79
3229 4162 2.037511 TGTCCAAAATAAGTCCGTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
3230 4163 3.069289 GTCCAAAATAAGTCCGTCCGTT 58.931 45.455 0.00 0.00 0.00 4.44
3231 4164 3.499537 GTCCAAAATAAGTCCGTCCGTTT 59.500 43.478 0.00 0.00 0.00 3.60
3232 4165 3.747529 TCCAAAATAAGTCCGTCCGTTTC 59.252 43.478 0.00 0.00 0.00 2.78
3233 4166 3.423907 CCAAAATAAGTCCGTCCGTTTCG 60.424 47.826 0.00 0.00 0.00 3.46
3234 4167 3.302365 AAATAAGTCCGTCCGTTTCGA 57.698 42.857 0.00 0.00 0.00 3.71
3235 4168 3.302365 AATAAGTCCGTCCGTTTCGAA 57.698 42.857 0.00 0.00 0.00 3.71
3236 4169 2.336554 TAAGTCCGTCCGTTTCGAAG 57.663 50.000 0.00 0.00 0.00 3.79
3237 4170 0.386838 AAGTCCGTCCGTTTCGAAGT 59.613 50.000 0.00 0.00 0.00 3.01
3238 4171 1.238439 AGTCCGTCCGTTTCGAAGTA 58.762 50.000 0.00 0.00 0.00 2.24
3239 4172 1.815003 AGTCCGTCCGTTTCGAAGTAT 59.185 47.619 0.00 0.00 0.00 2.12
3240 4173 3.009723 AGTCCGTCCGTTTCGAAGTATA 58.990 45.455 0.00 0.00 0.00 1.47
3241 4174 3.064545 AGTCCGTCCGTTTCGAAGTATAG 59.935 47.826 0.00 0.00 0.00 1.31
3242 4175 2.355756 TCCGTCCGTTTCGAAGTATAGG 59.644 50.000 0.00 0.00 0.00 2.57
3243 4176 2.098117 CCGTCCGTTTCGAAGTATAGGT 59.902 50.000 0.00 0.00 0.00 3.08
3244 4177 3.428045 CCGTCCGTTTCGAAGTATAGGTT 60.428 47.826 0.00 0.00 0.00 3.50
3245 4178 3.788163 CGTCCGTTTCGAAGTATAGGTTC 59.212 47.826 0.00 0.00 0.00 3.62
3246 4179 3.788163 GTCCGTTTCGAAGTATAGGTTCG 59.212 47.826 9.84 9.84 46.54 3.95
3247 4180 3.111098 CCGTTTCGAAGTATAGGTTCGG 58.889 50.000 14.26 0.00 45.48 4.30
3248 4181 2.533129 CGTTTCGAAGTATAGGTTCGGC 59.467 50.000 14.26 7.04 45.48 5.54
3249 4182 2.862536 GTTTCGAAGTATAGGTTCGGCC 59.137 50.000 14.26 0.00 45.48 6.13
3258 4191 3.502572 GGTTCGGCCTGCTGAATC 58.497 61.111 15.83 12.04 42.45 2.52
3259 4192 1.377202 GGTTCGGCCTGCTGAATCA 60.377 57.895 17.03 0.00 42.45 2.57
3260 4193 1.372087 GGTTCGGCCTGCTGAATCAG 61.372 60.000 17.03 5.78 42.45 2.90
3272 4205 1.471684 CTGAATCAGCAAGACCAAGGC 59.528 52.381 0.00 0.00 0.00 4.35
3273 4206 1.202915 TGAATCAGCAAGACCAAGGCA 60.203 47.619 0.00 0.00 0.00 4.75
3274 4207 1.471684 GAATCAGCAAGACCAAGGCAG 59.528 52.381 0.00 0.00 0.00 4.85
3275 4208 0.694771 ATCAGCAAGACCAAGGCAGA 59.305 50.000 0.00 0.00 0.00 4.26
3276 4209 0.694771 TCAGCAAGACCAAGGCAGAT 59.305 50.000 0.00 0.00 0.00 2.90
3277 4210 1.093159 CAGCAAGACCAAGGCAGATC 58.907 55.000 0.00 0.00 0.00 2.75
3278 4211 0.990374 AGCAAGACCAAGGCAGATCT 59.010 50.000 0.00 0.00 0.00 2.75
3279 4212 1.065564 AGCAAGACCAAGGCAGATCTC 60.066 52.381 0.00 0.00 0.00 2.75
3280 4213 1.649664 CAAGACCAAGGCAGATCTCG 58.350 55.000 0.00 0.00 0.00 4.04
3281 4214 1.066573 CAAGACCAAGGCAGATCTCGT 60.067 52.381 0.00 0.00 0.00 4.18
3282 4215 0.534412 AGACCAAGGCAGATCTCGTG 59.466 55.000 0.00 0.00 0.00 4.35
3283 4216 0.247736 GACCAAGGCAGATCTCGTGT 59.752 55.000 0.00 0.00 0.00 4.49
3284 4217 0.687354 ACCAAGGCAGATCTCGTGTT 59.313 50.000 0.00 0.00 0.00 3.32
3285 4218 1.338200 ACCAAGGCAGATCTCGTGTTC 60.338 52.381 0.00 0.00 0.00 3.18
3286 4219 1.338105 CCAAGGCAGATCTCGTGTTCA 60.338 52.381 0.00 0.00 0.00 3.18
3287 4220 1.998315 CAAGGCAGATCTCGTGTTCAG 59.002 52.381 0.00 0.00 0.00 3.02
3288 4221 1.550327 AGGCAGATCTCGTGTTCAGA 58.450 50.000 0.00 0.00 0.00 3.27
3289 4222 1.895798 AGGCAGATCTCGTGTTCAGAA 59.104 47.619 0.00 0.00 0.00 3.02
3290 4223 2.300152 AGGCAGATCTCGTGTTCAGAAA 59.700 45.455 0.00 0.00 0.00 2.52
3291 4224 2.670414 GGCAGATCTCGTGTTCAGAAAG 59.330 50.000 0.00 0.00 0.00 2.62
3292 4225 3.321497 GCAGATCTCGTGTTCAGAAAGT 58.679 45.455 0.00 0.00 0.00 2.66
3293 4226 3.122613 GCAGATCTCGTGTTCAGAAAGTG 59.877 47.826 0.00 0.00 0.00 3.16
3294 4227 3.122613 CAGATCTCGTGTTCAGAAAGTGC 59.877 47.826 0.00 0.00 0.00 4.40
3295 4228 1.865865 TCTCGTGTTCAGAAAGTGCC 58.134 50.000 0.00 0.00 0.00 5.01
3296 4229 1.138069 TCTCGTGTTCAGAAAGTGCCA 59.862 47.619 0.00 0.00 0.00 4.92
3297 4230 1.939934 CTCGTGTTCAGAAAGTGCCAA 59.060 47.619 0.00 0.00 0.00 4.52
3298 4231 2.549754 CTCGTGTTCAGAAAGTGCCAAT 59.450 45.455 0.00 0.00 0.00 3.16
3299 4232 2.948979 TCGTGTTCAGAAAGTGCCAATT 59.051 40.909 0.00 0.00 0.00 2.32
3300 4233 4.130857 TCGTGTTCAGAAAGTGCCAATTA 58.869 39.130 0.00 0.00 0.00 1.40
3301 4234 4.213270 TCGTGTTCAGAAAGTGCCAATTAG 59.787 41.667 0.00 0.00 0.00 1.73
3302 4235 4.229876 GTGTTCAGAAAGTGCCAATTAGC 58.770 43.478 0.00 0.00 0.00 3.09
3303 4236 3.888323 TGTTCAGAAAGTGCCAATTAGCA 59.112 39.130 0.00 0.00 41.46 3.49
3313 4246 4.333913 TGCCAATTAGCACACACAATTT 57.666 36.364 0.00 0.00 38.00 1.82
3314 4247 4.056740 TGCCAATTAGCACACACAATTTG 58.943 39.130 0.00 0.00 38.00 2.32
3315 4248 3.120580 GCCAATTAGCACACACAATTTGC 60.121 43.478 0.00 0.00 36.45 3.68
3317 4250 4.751098 CCAATTAGCACACACAATTTGCTT 59.249 37.500 6.87 0.00 44.26 3.91
3318 4251 5.333492 CCAATTAGCACACACAATTTGCTTG 60.333 40.000 6.87 0.67 44.26 4.01
3320 4253 3.249986 AGCACACACAATTTGCTTGTT 57.750 38.095 0.00 0.00 45.98 2.83
3321 4254 4.383850 AGCACACACAATTTGCTTGTTA 57.616 36.364 0.00 0.00 45.98 2.41
3322 4255 4.947645 AGCACACACAATTTGCTTGTTAT 58.052 34.783 0.00 0.00 45.98 1.89
3323 4256 5.358922 AGCACACACAATTTGCTTGTTATT 58.641 33.333 0.00 0.00 45.98 1.40
3324 4257 5.816777 AGCACACACAATTTGCTTGTTATTT 59.183 32.000 0.00 0.00 45.98 1.40
3325 4258 6.983307 AGCACACACAATTTGCTTGTTATTTA 59.017 30.769 0.00 0.00 45.98 1.40
3326 4259 7.656948 AGCACACACAATTTGCTTGTTATTTAT 59.343 29.630 0.00 0.00 45.98 1.40
3327 4260 8.281893 GCACACACAATTTGCTTGTTATTTATT 58.718 29.630 0.00 0.00 45.98 1.40
3348 4281 5.545658 TTTGATTAAACCACTCTCGATGC 57.454 39.130 0.00 0.00 0.00 3.91
3349 4282 4.471904 TGATTAAACCACTCTCGATGCT 57.528 40.909 0.00 0.00 0.00 3.79
3350 4283 4.832248 TGATTAAACCACTCTCGATGCTT 58.168 39.130 0.00 0.00 0.00 3.91
3351 4284 5.972935 TGATTAAACCACTCTCGATGCTTA 58.027 37.500 0.00 0.00 0.00 3.09
3352 4285 6.042777 TGATTAAACCACTCTCGATGCTTAG 58.957 40.000 0.00 0.00 0.00 2.18
3353 4286 2.301577 AACCACTCTCGATGCTTAGC 57.698 50.000 0.00 0.00 0.00 3.09
3354 4287 1.479709 ACCACTCTCGATGCTTAGCT 58.520 50.000 5.60 0.00 0.00 3.32
3355 4288 1.407258 ACCACTCTCGATGCTTAGCTC 59.593 52.381 5.60 0.00 0.00 4.09
3356 4289 1.680735 CCACTCTCGATGCTTAGCTCT 59.319 52.381 5.60 0.00 0.00 4.09
3357 4290 2.100584 CCACTCTCGATGCTTAGCTCTT 59.899 50.000 5.60 0.00 0.00 2.85
3358 4291 3.316588 CCACTCTCGATGCTTAGCTCTTA 59.683 47.826 5.60 0.00 0.00 2.10
3359 4292 4.536065 CACTCTCGATGCTTAGCTCTTAG 58.464 47.826 5.60 0.00 0.00 2.18
3360 4293 3.004315 ACTCTCGATGCTTAGCTCTTAGC 59.996 47.826 5.60 8.11 42.84 3.09
3372 4305 9.212641 TGCTTAGCTCTTAGCATGATTTAATAG 57.787 33.333 12.51 0.00 45.56 1.73
3373 4306 9.429359 GCTTAGCTCTTAGCATGATTTAATAGA 57.571 33.333 0.00 0.00 45.56 1.98
3377 4310 9.618890 AGCTCTTAGCATGATTTAATAGACAAA 57.381 29.630 0.00 0.00 45.56 2.83
3393 4326 8.918202 AATAGACAAAAATTCTAGGTGTCACA 57.082 30.769 5.12 0.00 40.83 3.58
3394 4327 8.918202 ATAGACAAAAATTCTAGGTGTCACAA 57.082 30.769 5.12 0.00 40.83 3.33
3395 4328 7.823745 AGACAAAAATTCTAGGTGTCACAAT 57.176 32.000 5.12 0.00 40.83 2.71
3396 4329 8.918202 AGACAAAAATTCTAGGTGTCACAATA 57.082 30.769 5.12 0.00 40.83 1.90
3397 4330 9.349713 AGACAAAAATTCTAGGTGTCACAATAA 57.650 29.630 5.12 0.00 40.83 1.40
3409 4342 8.934023 AGGTGTCACAATAATTAAAAGAAGGA 57.066 30.769 5.12 0.00 0.00 3.36
3410 4343 9.533831 AGGTGTCACAATAATTAAAAGAAGGAT 57.466 29.630 5.12 0.00 0.00 3.24
3436 4369 5.638596 AAGTTTATTAGAAACCCAAGCGG 57.361 39.130 0.00 0.00 37.81 5.52
3437 4370 7.147966 AATAAGTTTATTAGAAACCCAAGCGGG 60.148 37.037 0.00 0.00 43.75 6.13
3452 4385 3.015145 GGGCTGCCTACTCCCCAA 61.015 66.667 19.68 0.00 37.46 4.12
3453 4386 2.592308 GGCTGCCTACTCCCCAAG 59.408 66.667 12.43 0.00 0.00 3.61
3454 4387 1.995626 GGCTGCCTACTCCCCAAGA 60.996 63.158 12.43 0.00 0.00 3.02
3455 4388 1.562672 GGCTGCCTACTCCCCAAGAA 61.563 60.000 12.43 0.00 0.00 2.52
3456 4389 0.328258 GCTGCCTACTCCCCAAGAAA 59.672 55.000 0.00 0.00 0.00 2.52
3457 4390 1.680249 GCTGCCTACTCCCCAAGAAAG 60.680 57.143 0.00 0.00 0.00 2.62
3458 4391 1.630878 CTGCCTACTCCCCAAGAAAGT 59.369 52.381 0.00 0.00 0.00 2.66
3459 4392 1.628846 TGCCTACTCCCCAAGAAAGTC 59.371 52.381 0.00 0.00 0.00 3.01
3460 4393 1.909986 GCCTACTCCCCAAGAAAGTCT 59.090 52.381 0.00 0.00 0.00 3.24
3461 4394 3.105283 GCCTACTCCCCAAGAAAGTCTA 58.895 50.000 0.00 0.00 0.00 2.59
3462 4395 3.133183 GCCTACTCCCCAAGAAAGTCTAG 59.867 52.174 0.00 0.00 0.00 2.43
3463 4396 3.707102 CCTACTCCCCAAGAAAGTCTAGG 59.293 52.174 0.00 0.00 0.00 3.02
3464 4397 2.552367 ACTCCCCAAGAAAGTCTAGGG 58.448 52.381 6.87 6.87 40.05 3.53
3465 4398 2.157989 ACTCCCCAAGAAAGTCTAGGGT 60.158 50.000 11.26 0.00 39.80 4.34
3466 4399 2.913617 CTCCCCAAGAAAGTCTAGGGTT 59.086 50.000 11.26 0.00 39.80 4.11
3467 4400 2.910977 TCCCCAAGAAAGTCTAGGGTTC 59.089 50.000 11.26 0.00 39.80 3.62
3468 4401 2.026169 CCCCAAGAAAGTCTAGGGTTCC 60.026 54.545 0.00 0.00 36.15 3.62
3469 4402 2.026169 CCCAAGAAAGTCTAGGGTTCCC 60.026 54.545 0.00 0.00 34.75 3.97
3470 4403 2.913617 CCAAGAAAGTCTAGGGTTCCCT 59.086 50.000 15.19 15.19 40.06 4.20
3471 4404 3.330998 CCAAGAAAGTCTAGGGTTCCCTT 59.669 47.826 16.05 0.00 37.64 3.95
3472 4405 4.534897 CCAAGAAAGTCTAGGGTTCCCTTA 59.465 45.833 16.05 2.29 37.64 2.69
3473 4406 5.489249 CAAGAAAGTCTAGGGTTCCCTTAC 58.511 45.833 16.05 13.84 37.64 2.34
3474 4407 4.102598 AGAAAGTCTAGGGTTCCCTTACC 58.897 47.826 16.05 4.29 37.64 2.85
3475 4408 3.868476 AAGTCTAGGGTTCCCTTACCT 57.132 47.619 16.05 6.42 38.30 3.08
3476 4409 3.401589 AGTCTAGGGTTCCCTTACCTC 57.598 52.381 16.05 3.54 38.30 3.85
3477 4410 2.023210 AGTCTAGGGTTCCCTTACCTCC 60.023 54.545 16.05 0.00 38.30 4.30
3478 4411 1.293153 TCTAGGGTTCCCTTACCTCCC 59.707 57.143 16.05 0.00 38.30 4.30
3479 4412 0.031817 TAGGGTTCCCTTACCTCCCG 60.032 60.000 16.05 0.00 42.57 5.14
3480 4413 1.306397 GGGTTCCCTTACCTCCCGA 60.306 63.158 0.00 0.00 38.30 5.14
3481 4414 1.335882 GGGTTCCCTTACCTCCCGAG 61.336 65.000 0.00 0.00 38.30 4.63
3482 4415 0.616964 GGTTCCCTTACCTCCCGAGT 60.617 60.000 0.00 0.00 35.23 4.18
3483 4416 0.822811 GTTCCCTTACCTCCCGAGTC 59.177 60.000 0.00 0.00 0.00 3.36
3484 4417 0.325016 TTCCCTTACCTCCCGAGTCC 60.325 60.000 0.00 0.00 0.00 3.85
3485 4418 1.761271 CCCTTACCTCCCGAGTCCC 60.761 68.421 0.00 0.00 0.00 4.46
3486 4419 2.125961 CCTTACCTCCCGAGTCCCG 61.126 68.421 0.00 0.00 38.18 5.14
3487 4420 2.757099 TTACCTCCCGAGTCCCGC 60.757 66.667 0.00 0.00 36.84 6.13
3488 4421 3.292481 TTACCTCCCGAGTCCCGCT 62.292 63.158 0.00 0.00 36.84 5.52
3489 4422 1.925285 TTACCTCCCGAGTCCCGCTA 61.925 60.000 0.00 0.00 36.84 4.26
3490 4423 1.925285 TACCTCCCGAGTCCCGCTAA 61.925 60.000 0.00 0.00 36.84 3.09
3491 4424 1.833049 CCTCCCGAGTCCCGCTAAT 60.833 63.158 0.00 0.00 36.84 1.73
3492 4425 1.364171 CTCCCGAGTCCCGCTAATG 59.636 63.158 0.00 0.00 36.84 1.90
3493 4426 2.280186 CCCGAGTCCCGCTAATGC 60.280 66.667 0.00 0.00 36.84 3.56
3494 4427 2.280186 CCGAGTCCCGCTAATGCC 60.280 66.667 0.00 0.00 36.84 4.40
3495 4428 2.658593 CGAGTCCCGCTAATGCCG 60.659 66.667 0.00 0.00 35.36 5.69
3496 4429 2.967615 GAGTCCCGCTAATGCCGC 60.968 66.667 0.00 0.00 35.36 6.53
3497 4430 4.547367 AGTCCCGCTAATGCCGCC 62.547 66.667 0.00 0.00 35.36 6.13
3514 4447 4.099170 CGTCGGTCCGCTTCGTCT 62.099 66.667 6.34 0.00 0.00 4.18
3515 4448 2.202453 GTCGGTCCGCTTCGTCTC 60.202 66.667 6.34 0.00 0.00 3.36
3516 4449 3.437795 TCGGTCCGCTTCGTCTCC 61.438 66.667 6.34 0.00 0.00 3.71
3517 4450 4.831307 CGGTCCGCTTCGTCTCCG 62.831 72.222 0.00 0.00 0.00 4.63
3518 4451 4.493747 GGTCCGCTTCGTCTCCGG 62.494 72.222 0.00 0.00 43.21 5.14
3519 4452 3.745803 GTCCGCTTCGTCTCCGGT 61.746 66.667 0.00 0.00 42.48 5.28
3520 4453 3.744719 TCCGCTTCGTCTCCGGTG 61.745 66.667 0.00 0.00 42.48 4.94
3521 4454 4.796231 CCGCTTCGTCTCCGGTGG 62.796 72.222 0.00 0.00 37.36 4.61
3524 4457 3.382832 CTTCGTCTCCGGTGGCCT 61.383 66.667 3.32 0.00 33.95 5.19
3525 4458 2.920912 TTCGTCTCCGGTGGCCTT 60.921 61.111 3.32 0.00 33.95 4.35
3526 4459 1.601419 CTTCGTCTCCGGTGGCCTTA 61.601 60.000 3.32 0.00 33.95 2.69
3527 4460 1.601419 TTCGTCTCCGGTGGCCTTAG 61.601 60.000 3.32 0.00 33.95 2.18
3528 4461 2.901042 GTCTCCGGTGGCCTTAGG 59.099 66.667 3.32 4.25 0.00 2.69
3529 4462 2.365105 TCTCCGGTGGCCTTAGGG 60.365 66.667 3.32 0.00 0.00 3.53
3547 4480 4.155733 CCATGGCGGCGTGGTAGA 62.156 66.667 35.50 3.48 0.00 2.59
3548 4481 2.108976 CATGGCGGCGTGGTAGAT 59.891 61.111 22.70 0.00 0.00 1.98
3549 4482 1.956170 CATGGCGGCGTGGTAGATC 60.956 63.158 22.70 0.00 0.00 2.75
3550 4483 2.134287 ATGGCGGCGTGGTAGATCT 61.134 57.895 9.37 0.00 0.00 2.75
3551 4484 1.686325 ATGGCGGCGTGGTAGATCTT 61.686 55.000 9.37 0.00 0.00 2.40
3552 4485 1.883084 GGCGGCGTGGTAGATCTTG 60.883 63.158 9.37 0.00 0.00 3.02
3553 4486 1.883084 GCGGCGTGGTAGATCTTGG 60.883 63.158 9.37 0.00 0.00 3.61
3554 4487 1.883084 CGGCGTGGTAGATCTTGGC 60.883 63.158 0.00 0.00 0.00 4.52
3555 4488 1.523938 GGCGTGGTAGATCTTGGCC 60.524 63.158 0.00 0.00 0.00 5.36
3556 4489 1.523938 GCGTGGTAGATCTTGGCCC 60.524 63.158 0.00 0.00 0.00 5.80
3557 4490 1.972660 GCGTGGTAGATCTTGGCCCT 61.973 60.000 0.00 0.00 0.00 5.19
3558 4491 0.541863 CGTGGTAGATCTTGGCCCTT 59.458 55.000 0.00 0.00 0.00 3.95
3559 4492 1.743772 CGTGGTAGATCTTGGCCCTTG 60.744 57.143 0.00 0.00 0.00 3.61
3560 4493 1.559682 GTGGTAGATCTTGGCCCTTGA 59.440 52.381 0.00 0.00 0.00 3.02
3561 4494 1.559682 TGGTAGATCTTGGCCCTTGAC 59.440 52.381 0.00 0.00 0.00 3.18
3562 4495 1.559682 GGTAGATCTTGGCCCTTGACA 59.440 52.381 0.00 0.00 0.00 3.58
3563 4496 2.026262 GGTAGATCTTGGCCCTTGACAA 60.026 50.000 0.00 0.00 0.00 3.18
3564 4497 2.206576 AGATCTTGGCCCTTGACAAC 57.793 50.000 0.00 0.00 0.00 3.32
3565 4498 0.804989 GATCTTGGCCCTTGACAACG 59.195 55.000 0.00 0.00 0.00 4.10
3566 4499 0.400213 ATCTTGGCCCTTGACAACGA 59.600 50.000 0.00 0.00 0.00 3.85
3567 4500 0.250295 TCTTGGCCCTTGACAACGAG 60.250 55.000 0.00 0.00 0.00 4.18
3568 4501 0.250295 CTTGGCCCTTGACAACGAGA 60.250 55.000 0.00 0.00 0.00 4.04
3569 4502 0.250295 TTGGCCCTTGACAACGAGAG 60.250 55.000 0.00 0.00 0.00 3.20
3570 4503 1.376037 GGCCCTTGACAACGAGAGG 60.376 63.158 0.00 0.00 0.00 3.69
3572 4505 1.376037 CCCTTGACAACGAGAGGGC 60.376 63.158 0.00 0.00 42.18 5.19
3573 4506 1.674057 CCTTGACAACGAGAGGGCT 59.326 57.895 0.00 0.00 0.00 5.19
3574 4507 0.390472 CCTTGACAACGAGAGGGCTC 60.390 60.000 0.00 0.00 37.81 4.70
3575 4508 0.605589 CTTGACAACGAGAGGGCTCT 59.394 55.000 0.00 0.00 43.78 4.09
3576 4509 0.318441 TTGACAACGAGAGGGCTCTG 59.682 55.000 0.00 0.00 40.61 3.35
3577 4510 0.827925 TGACAACGAGAGGGCTCTGT 60.828 55.000 0.00 0.00 40.61 3.41
3578 4511 0.318762 GACAACGAGAGGGCTCTGTT 59.681 55.000 0.00 0.00 40.61 3.16
3579 4512 0.759346 ACAACGAGAGGGCTCTGTTT 59.241 50.000 0.00 0.00 40.61 2.83
3580 4513 1.141053 ACAACGAGAGGGCTCTGTTTT 59.859 47.619 0.00 0.00 40.61 2.43
3581 4514 1.801178 CAACGAGAGGGCTCTGTTTTC 59.199 52.381 0.00 0.00 40.61 2.29
3582 4515 0.038159 ACGAGAGGGCTCTGTTTTCG 60.038 55.000 0.00 0.00 40.61 3.46
3583 4516 0.737715 CGAGAGGGCTCTGTTTTCGG 60.738 60.000 0.00 0.00 40.61 4.30
3584 4517 0.321996 GAGAGGGCTCTGTTTTCGGT 59.678 55.000 0.00 0.00 40.61 4.69
3585 4518 0.765510 AGAGGGCTCTGTTTTCGGTT 59.234 50.000 0.00 0.00 38.75 4.44
3586 4519 0.875059 GAGGGCTCTGTTTTCGGTTG 59.125 55.000 0.00 0.00 0.00 3.77
3587 4520 0.182775 AGGGCTCTGTTTTCGGTTGT 59.817 50.000 0.00 0.00 0.00 3.32
3588 4521 1.029681 GGGCTCTGTTTTCGGTTGTT 58.970 50.000 0.00 0.00 0.00 2.83
3589 4522 1.407618 GGGCTCTGTTTTCGGTTGTTT 59.592 47.619 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.550978 CAACTAAATCGTCATCCCGCT 58.449 47.619 0.00 0.00 0.00 5.52
86 87 5.068460 TGCTTTTACAACTACACTTGCCATT 59.932 36.000 0.00 0.00 0.00 3.16
183 184 2.252747 CGGCAACTACGACAATTACGA 58.747 47.619 10.40 0.00 34.70 3.43
184 185 1.987770 ACGGCAACTACGACAATTACG 59.012 47.619 0.00 3.28 34.93 3.18
185 186 2.473376 GCACGGCAACTACGACAATTAC 60.473 50.000 0.00 0.00 34.93 1.89
186 187 1.727880 GCACGGCAACTACGACAATTA 59.272 47.619 0.00 0.00 34.93 1.40
187 188 0.515564 GCACGGCAACTACGACAATT 59.484 50.000 0.00 0.00 34.93 2.32
188 189 1.623081 CGCACGGCAACTACGACAAT 61.623 55.000 0.00 0.00 34.93 2.71
189 190 2.304401 CGCACGGCAACTACGACAA 61.304 57.895 0.00 0.00 34.93 3.18
190 191 2.731721 CGCACGGCAACTACGACA 60.732 61.111 0.00 0.00 34.93 4.35
191 192 2.732094 ACGCACGGCAACTACGAC 60.732 61.111 0.00 0.00 34.93 4.34
192 193 2.480853 ATCACGCACGGCAACTACGA 62.481 55.000 0.00 0.00 34.93 3.43
206 207 6.238103 CCATAAGTGGCAAGTAGTTAATCACG 60.238 42.308 0.00 0.00 39.01 4.35
226 227 8.052748 AGATGGCAACTACTATTTTGACCATAA 58.947 33.333 0.00 0.00 38.56 1.90
238 239 5.247564 AGGTAAACACAGATGGCAACTACTA 59.752 40.000 0.00 0.00 37.61 1.82
251 252 3.472652 TGTGGCAACTAGGTAAACACAG 58.527 45.455 7.13 0.00 33.03 3.66
272 273 2.009774 GCAACTATGGTTCGAGCACAT 58.990 47.619 0.53 5.17 32.73 3.21
277 278 2.632377 ACATGGCAACTATGGTTCGAG 58.368 47.619 0.00 0.00 32.73 4.04
280 281 5.835113 ACAATACATGGCAACTATGGTTC 57.165 39.130 0.00 0.00 32.73 3.62
350 351 0.888736 TTGCTACACGGCAACTGCAT 60.889 50.000 3.76 0.00 45.64 3.96
420 421 4.868026 TTGCTACACGGCAACTGT 57.132 50.000 0.00 0.00 45.64 3.55
507 508 2.694628 ACACACATGGCAACTGTGATTT 59.305 40.909 26.05 10.13 45.44 2.17
548 549 2.224185 TGGATGACAACTGCAGTTACGT 60.224 45.455 30.67 24.54 36.32 3.57
563 564 3.381590 CGACACTCCTATCTTGTGGATGA 59.618 47.826 0.00 0.00 36.16 2.92
631 632 0.821301 TGATTTTCGCCCACACAGCA 60.821 50.000 0.00 0.00 0.00 4.41
648 649 1.885388 CGTTGTGTGGGCGAACTGA 60.885 57.895 0.00 0.00 0.00 3.41
709 710 2.281208 GCTGGTGTGTGGGCGTTA 60.281 61.111 0.00 0.00 0.00 3.18
740 741 3.949113 ACGTAAAGGTGAATTTGGTGTGT 59.051 39.130 0.00 0.00 0.00 3.72
751 752 6.420588 CACGAATTTTAACACGTAAAGGTGA 58.579 36.000 9.60 0.00 40.38 4.02
759 760 5.228427 GTCTTTTGCACGAATTTTAACACGT 59.772 36.000 0.00 0.00 39.53 4.49
765 766 6.125327 TCACTGTCTTTTGCACGAATTTTA 57.875 33.333 0.00 0.00 0.00 1.52
768 769 4.351192 GTTCACTGTCTTTTGCACGAATT 58.649 39.130 0.00 0.00 0.00 2.17
797 798 0.030235 CAACTCGTCCACACGTCTGA 59.970 55.000 0.00 0.00 46.76 3.27
828 829 2.047002 AACACTAAAGCCCACACGTT 57.953 45.000 0.00 0.00 0.00 3.99
886 888 8.079809 CCATCCCGTCGCTATTTTTATTTATTT 58.920 33.333 0.00 0.00 0.00 1.40
887 889 7.446013 TCCATCCCGTCGCTATTTTTATTTATT 59.554 33.333 0.00 0.00 0.00 1.40
888 890 6.938030 TCCATCCCGTCGCTATTTTTATTTAT 59.062 34.615 0.00 0.00 0.00 1.40
889 891 6.203338 GTCCATCCCGTCGCTATTTTTATTTA 59.797 38.462 0.00 0.00 0.00 1.40
893 895 3.133362 AGTCCATCCCGTCGCTATTTTTA 59.867 43.478 0.00 0.00 0.00 1.52
894 896 2.093128 AGTCCATCCCGTCGCTATTTTT 60.093 45.455 0.00 0.00 0.00 1.94
947 951 1.664151 GGAATCCGGTCGCTACTTTTG 59.336 52.381 0.00 0.00 0.00 2.44
984 988 1.751927 CATGGTTGCTCCCTGCTCC 60.752 63.158 0.00 0.00 43.37 4.70
1161 1174 3.353600 TCGGCGTACCAGTCGAAA 58.646 55.556 6.85 0.00 45.75 3.46
1551 1564 1.781555 GACGTGGCAGATGTTGTCG 59.218 57.895 0.00 0.00 32.72 4.35
1644 1657 2.024871 GAGATCTCGACGGCCGTG 59.975 66.667 39.65 26.80 39.75 4.94
1796 1809 0.957888 GCTGTTTCTCTGGCTCACCC 60.958 60.000 0.00 0.00 33.59 4.61
2266 2279 4.514577 CTCCGGCGCGAACTCCAT 62.515 66.667 12.10 0.00 0.00 3.41
2449 2462 1.521681 GTGACTCCATACTGGCCGC 60.522 63.158 0.00 0.00 37.47 6.53
2699 3596 8.349983 CCTCCATTCCTAAATATAAAACGTTGG 58.650 37.037 0.00 0.00 0.00 3.77
2734 3631 9.956640 AAAGAATCTCATGAGACTACTTCAATT 57.043 29.630 27.37 19.59 40.75 2.32
2843 3772 1.686355 ACAAATTCCCACAGCAACGA 58.314 45.000 0.00 0.00 0.00 3.85
3004 3936 7.229306 TCTGATGCATGTACCCAGATTATTTTC 59.771 37.037 2.46 0.00 0.00 2.29
3053 3986 5.796935 CACTACTTTTGCTTACATGACATGC 59.203 40.000 15.49 1.91 0.00 4.06
3054 3987 7.132694 TCACTACTTTTGCTTACATGACATG 57.867 36.000 14.02 14.02 0.00 3.21
3055 3988 7.928307 ATCACTACTTTTGCTTACATGACAT 57.072 32.000 0.00 0.00 0.00 3.06
3097 4030 9.767684 CAGTCAGATTAATAAAATAAACGTGCA 57.232 29.630 0.00 0.00 0.00 4.57
3098 4031 9.769093 ACAGTCAGATTAATAAAATAAACGTGC 57.231 29.630 0.00 0.00 0.00 5.34
3132 4065 8.932791 CGTGGACTTGTACTCTTTTATTGTTAT 58.067 33.333 0.00 0.00 0.00 1.89
3133 4066 7.927629 ACGTGGACTTGTACTCTTTTATTGTTA 59.072 33.333 0.00 0.00 0.00 2.41
3134 4067 6.764560 ACGTGGACTTGTACTCTTTTATTGTT 59.235 34.615 0.00 0.00 0.00 2.83
3135 4068 6.285990 ACGTGGACTTGTACTCTTTTATTGT 58.714 36.000 0.00 0.00 0.00 2.71
3136 4069 6.645415 AGACGTGGACTTGTACTCTTTTATTG 59.355 38.462 0.00 0.00 0.00 1.90
3137 4070 6.756221 AGACGTGGACTTGTACTCTTTTATT 58.244 36.000 0.00 0.00 0.00 1.40
3138 4071 6.342338 AGACGTGGACTTGTACTCTTTTAT 57.658 37.500 0.00 0.00 0.00 1.40
3139 4072 5.779529 AGACGTGGACTTGTACTCTTTTA 57.220 39.130 0.00 0.00 0.00 1.52
3140 4073 4.667519 AGACGTGGACTTGTACTCTTTT 57.332 40.909 0.00 0.00 0.00 2.27
3141 4074 5.475909 TCATAGACGTGGACTTGTACTCTTT 59.524 40.000 0.00 0.00 0.00 2.52
3142 4075 5.008331 TCATAGACGTGGACTTGTACTCTT 58.992 41.667 0.00 0.00 0.00 2.85
3143 4076 4.586884 TCATAGACGTGGACTTGTACTCT 58.413 43.478 0.00 0.00 0.00 3.24
3144 4077 4.959596 TCATAGACGTGGACTTGTACTC 57.040 45.455 0.00 0.00 0.00 2.59
3145 4078 5.717078 TTTCATAGACGTGGACTTGTACT 57.283 39.130 0.00 0.00 0.00 2.73
3146 4079 8.470040 TTTATTTCATAGACGTGGACTTGTAC 57.530 34.615 0.00 0.00 0.00 2.90
3147 4080 8.525316 TCTTTATTTCATAGACGTGGACTTGTA 58.475 33.333 0.00 0.00 0.00 2.41
3148 4081 7.383687 TCTTTATTTCATAGACGTGGACTTGT 58.616 34.615 0.00 0.00 0.00 3.16
3149 4082 7.827819 TCTTTATTTCATAGACGTGGACTTG 57.172 36.000 0.00 0.00 0.00 3.16
3150 4083 7.011482 GCATCTTTATTTCATAGACGTGGACTT 59.989 37.037 0.00 0.00 0.00 3.01
3151 4084 6.480320 GCATCTTTATTTCATAGACGTGGACT 59.520 38.462 0.00 0.00 0.00 3.85
3152 4085 6.257849 TGCATCTTTATTTCATAGACGTGGAC 59.742 38.462 0.00 0.00 0.00 4.02
3153 4086 6.257849 GTGCATCTTTATTTCATAGACGTGGA 59.742 38.462 0.00 0.00 0.00 4.02
3154 4087 6.037062 TGTGCATCTTTATTTCATAGACGTGG 59.963 38.462 0.00 0.00 0.00 4.94
3155 4088 6.901887 GTGTGCATCTTTATTTCATAGACGTG 59.098 38.462 0.00 0.00 0.00 4.49
3156 4089 6.593770 TGTGTGCATCTTTATTTCATAGACGT 59.406 34.615 0.00 0.00 0.00 4.34
3157 4090 7.003939 TGTGTGCATCTTTATTTCATAGACG 57.996 36.000 0.00 0.00 0.00 4.18
3158 4091 9.443283 GATTGTGTGCATCTTTATTTCATAGAC 57.557 33.333 0.00 0.00 0.00 2.59
3159 4092 8.623903 GGATTGTGTGCATCTTTATTTCATAGA 58.376 33.333 0.00 0.00 0.00 1.98
3160 4093 8.407832 TGGATTGTGTGCATCTTTATTTCATAG 58.592 33.333 0.00 0.00 0.00 2.23
3161 4094 8.291191 TGGATTGTGTGCATCTTTATTTCATA 57.709 30.769 0.00 0.00 0.00 2.15
3162 4095 7.172868 TGGATTGTGTGCATCTTTATTTCAT 57.827 32.000 0.00 0.00 0.00 2.57
3163 4096 6.587206 TGGATTGTGTGCATCTTTATTTCA 57.413 33.333 0.00 0.00 0.00 2.69
3164 4097 7.887996 TTTGGATTGTGTGCATCTTTATTTC 57.112 32.000 0.00 0.00 0.00 2.17
3165 4098 9.590451 CTATTTGGATTGTGTGCATCTTTATTT 57.410 29.630 0.00 0.00 0.00 1.40
3166 4099 8.970020 TCTATTTGGATTGTGTGCATCTTTATT 58.030 29.630 0.00 0.00 0.00 1.40
3167 4100 8.408601 GTCTATTTGGATTGTGTGCATCTTTAT 58.591 33.333 0.00 0.00 0.00 1.40
3168 4101 7.392953 TGTCTATTTGGATTGTGTGCATCTTTA 59.607 33.333 0.00 0.00 0.00 1.85
3169 4102 6.209192 TGTCTATTTGGATTGTGTGCATCTTT 59.791 34.615 0.00 0.00 0.00 2.52
3170 4103 5.711506 TGTCTATTTGGATTGTGTGCATCTT 59.288 36.000 0.00 0.00 0.00 2.40
3171 4104 5.124457 GTGTCTATTTGGATTGTGTGCATCT 59.876 40.000 0.00 0.00 0.00 2.90
3172 4105 5.106197 TGTGTCTATTTGGATTGTGTGCATC 60.106 40.000 0.00 0.00 0.00 3.91
3173 4106 4.766373 TGTGTCTATTTGGATTGTGTGCAT 59.234 37.500 0.00 0.00 0.00 3.96
3174 4107 4.140536 TGTGTCTATTTGGATTGTGTGCA 58.859 39.130 0.00 0.00 0.00 4.57
3175 4108 4.764679 TGTGTCTATTTGGATTGTGTGC 57.235 40.909 0.00 0.00 0.00 4.57
3176 4109 5.914635 GTGTTGTGTCTATTTGGATTGTGTG 59.085 40.000 0.00 0.00 0.00 3.82
3177 4110 5.009610 GGTGTTGTGTCTATTTGGATTGTGT 59.990 40.000 0.00 0.00 0.00 3.72
3178 4111 5.009510 TGGTGTTGTGTCTATTTGGATTGTG 59.990 40.000 0.00 0.00 0.00 3.33
3179 4112 5.136828 TGGTGTTGTGTCTATTTGGATTGT 58.863 37.500 0.00 0.00 0.00 2.71
3180 4113 5.703978 TGGTGTTGTGTCTATTTGGATTG 57.296 39.130 0.00 0.00 0.00 2.67
3181 4114 7.450014 TGTTATGGTGTTGTGTCTATTTGGATT 59.550 33.333 0.00 0.00 0.00 3.01
3182 4115 6.945435 TGTTATGGTGTTGTGTCTATTTGGAT 59.055 34.615 0.00 0.00 0.00 3.41
3183 4116 6.299922 TGTTATGGTGTTGTGTCTATTTGGA 58.700 36.000 0.00 0.00 0.00 3.53
3184 4117 6.567687 TGTTATGGTGTTGTGTCTATTTGG 57.432 37.500 0.00 0.00 0.00 3.28
3185 4118 7.592938 ACATGTTATGGTGTTGTGTCTATTTG 58.407 34.615 0.00 0.00 33.60 2.32
3186 4119 7.094377 GGACATGTTATGGTGTTGTGTCTATTT 60.094 37.037 0.00 0.00 35.90 1.40
3187 4120 6.374333 GGACATGTTATGGTGTTGTGTCTATT 59.626 38.462 0.00 0.00 35.90 1.73
3188 4121 5.880332 GGACATGTTATGGTGTTGTGTCTAT 59.120 40.000 0.00 0.00 35.90 1.98
3189 4122 5.221742 TGGACATGTTATGGTGTTGTGTCTA 60.222 40.000 0.00 0.00 35.90 2.59
3190 4123 4.072131 GGACATGTTATGGTGTTGTGTCT 58.928 43.478 0.00 0.00 35.90 3.41
3191 4124 3.818210 TGGACATGTTATGGTGTTGTGTC 59.182 43.478 0.00 0.00 35.11 3.67
3192 4125 3.826524 TGGACATGTTATGGTGTTGTGT 58.173 40.909 0.00 0.00 33.60 3.72
3193 4126 4.844998 TTGGACATGTTATGGTGTTGTG 57.155 40.909 0.00 0.00 33.60 3.33
3194 4127 5.860941 TTTTGGACATGTTATGGTGTTGT 57.139 34.783 0.00 0.00 33.60 3.32
3195 4128 8.087750 ACTTATTTTGGACATGTTATGGTGTTG 58.912 33.333 0.00 0.00 33.60 3.33
3196 4129 8.189119 ACTTATTTTGGACATGTTATGGTGTT 57.811 30.769 0.00 0.00 33.60 3.32
3197 4130 7.093945 GGACTTATTTTGGACATGTTATGGTGT 60.094 37.037 0.00 0.00 33.60 4.16
3198 4131 7.257722 GGACTTATTTTGGACATGTTATGGTG 58.742 38.462 0.00 0.00 33.60 4.17
3199 4132 6.094881 CGGACTTATTTTGGACATGTTATGGT 59.905 38.462 0.00 0.00 33.60 3.55
3200 4133 6.094881 ACGGACTTATTTTGGACATGTTATGG 59.905 38.462 0.00 0.00 33.60 2.74
3201 4134 7.083875 ACGGACTTATTTTGGACATGTTATG 57.916 36.000 0.00 0.00 0.00 1.90
3202 4135 6.317893 GGACGGACTTATTTTGGACATGTTAT 59.682 38.462 0.00 0.00 0.00 1.89
3203 4136 5.644636 GGACGGACTTATTTTGGACATGTTA 59.355 40.000 0.00 0.00 0.00 2.41
3204 4137 4.457949 GGACGGACTTATTTTGGACATGTT 59.542 41.667 0.00 0.00 0.00 2.71
3205 4138 4.007659 GGACGGACTTATTTTGGACATGT 58.992 43.478 0.00 0.00 0.00 3.21
3206 4139 3.063452 CGGACGGACTTATTTTGGACATG 59.937 47.826 0.00 0.00 0.00 3.21
3207 4140 3.267483 CGGACGGACTTATTTTGGACAT 58.733 45.455 0.00 0.00 0.00 3.06
3208 4141 2.037511 ACGGACGGACTTATTTTGGACA 59.962 45.455 0.00 0.00 0.00 4.02
3209 4142 2.691927 ACGGACGGACTTATTTTGGAC 58.308 47.619 0.00 0.00 0.00 4.02
3210 4143 3.405823 AACGGACGGACTTATTTTGGA 57.594 42.857 0.00 0.00 0.00 3.53
3211 4144 3.423907 CGAAACGGACGGACTTATTTTGG 60.424 47.826 0.00 0.00 0.00 3.28
3212 4145 3.429543 TCGAAACGGACGGACTTATTTTG 59.570 43.478 0.00 0.00 0.00 2.44
3213 4146 3.652274 TCGAAACGGACGGACTTATTTT 58.348 40.909 0.00 0.00 0.00 1.82
3214 4147 3.302365 TCGAAACGGACGGACTTATTT 57.698 42.857 0.00 0.00 0.00 1.40
3215 4148 3.248266 CTTCGAAACGGACGGACTTATT 58.752 45.455 0.00 0.00 0.00 1.40
3216 4149 2.229784 ACTTCGAAACGGACGGACTTAT 59.770 45.455 0.00 0.00 0.00 1.73
3217 4150 1.608590 ACTTCGAAACGGACGGACTTA 59.391 47.619 0.00 0.00 0.00 2.24
3218 4151 0.386838 ACTTCGAAACGGACGGACTT 59.613 50.000 0.00 0.00 0.00 3.01
3219 4152 1.238439 TACTTCGAAACGGACGGACT 58.762 50.000 0.00 0.00 0.00 3.85
3220 4153 2.268730 ATACTTCGAAACGGACGGAC 57.731 50.000 0.00 0.00 0.00 4.79
3221 4154 2.355756 CCTATACTTCGAAACGGACGGA 59.644 50.000 0.00 0.00 0.00 4.69
3222 4155 2.098117 ACCTATACTTCGAAACGGACGG 59.902 50.000 0.00 0.00 0.00 4.79
3223 4156 3.411415 ACCTATACTTCGAAACGGACG 57.589 47.619 0.00 0.00 0.00 4.79
3224 4157 3.788163 CGAACCTATACTTCGAAACGGAC 59.212 47.826 0.00 0.00 42.57 4.79
3225 4158 3.181497 CCGAACCTATACTTCGAAACGGA 60.181 47.826 0.00 0.00 42.57 4.69
3226 4159 3.111098 CCGAACCTATACTTCGAAACGG 58.889 50.000 0.00 0.00 42.57 4.44
3227 4160 2.533129 GCCGAACCTATACTTCGAAACG 59.467 50.000 0.00 0.00 42.57 3.60
3228 4161 2.862536 GGCCGAACCTATACTTCGAAAC 59.137 50.000 0.00 0.77 42.57 2.78
3229 4162 3.169355 GGCCGAACCTATACTTCGAAA 57.831 47.619 0.00 0.00 42.57 3.46
3230 4163 2.877043 GGCCGAACCTATACTTCGAA 57.123 50.000 0.00 0.00 42.57 3.71
3241 4174 1.372087 CTGATTCAGCAGGCCGAACC 61.372 60.000 0.00 0.00 39.61 3.62
3242 4175 2.093216 CTGATTCAGCAGGCCGAAC 58.907 57.895 0.00 0.00 32.26 3.95
3243 4176 4.623814 CTGATTCAGCAGGCCGAA 57.376 55.556 0.00 0.00 32.26 4.30
3252 4185 1.471684 GCCTTGGTCTTGCTGATTCAG 59.528 52.381 9.40 9.40 34.12 3.02
3253 4186 1.202915 TGCCTTGGTCTTGCTGATTCA 60.203 47.619 0.00 0.00 0.00 2.57
3254 4187 1.471684 CTGCCTTGGTCTTGCTGATTC 59.528 52.381 0.00 0.00 0.00 2.52
3255 4188 1.074405 TCTGCCTTGGTCTTGCTGATT 59.926 47.619 0.00 0.00 0.00 2.57
3256 4189 0.694771 TCTGCCTTGGTCTTGCTGAT 59.305 50.000 0.00 0.00 0.00 2.90
3257 4190 0.694771 ATCTGCCTTGGTCTTGCTGA 59.305 50.000 0.00 0.00 37.37 4.26
3258 4191 1.093159 GATCTGCCTTGGTCTTGCTG 58.907 55.000 0.00 0.00 0.00 4.41
3259 4192 0.990374 AGATCTGCCTTGGTCTTGCT 59.010 50.000 0.00 0.00 0.00 3.91
3260 4193 1.377536 GAGATCTGCCTTGGTCTTGC 58.622 55.000 0.00 0.00 0.00 4.01
3261 4194 1.066573 ACGAGATCTGCCTTGGTCTTG 60.067 52.381 0.00 0.00 0.00 3.02
3262 4195 1.066573 CACGAGATCTGCCTTGGTCTT 60.067 52.381 0.00 0.00 0.00 3.01
3263 4196 0.534412 CACGAGATCTGCCTTGGTCT 59.466 55.000 0.00 0.00 0.00 3.85
3264 4197 0.247736 ACACGAGATCTGCCTTGGTC 59.752 55.000 0.00 0.00 0.00 4.02
3265 4198 0.687354 AACACGAGATCTGCCTTGGT 59.313 50.000 0.00 0.00 0.00 3.67
3266 4199 1.338105 TGAACACGAGATCTGCCTTGG 60.338 52.381 0.00 0.00 0.00 3.61
3267 4200 1.998315 CTGAACACGAGATCTGCCTTG 59.002 52.381 0.00 0.00 0.00 3.61
3268 4201 1.895798 TCTGAACACGAGATCTGCCTT 59.104 47.619 0.00 0.00 0.00 4.35
3269 4202 1.550327 TCTGAACACGAGATCTGCCT 58.450 50.000 0.00 0.00 0.00 4.75
3270 4203 2.370281 TTCTGAACACGAGATCTGCC 57.630 50.000 0.00 0.00 0.00 4.85
3271 4204 3.122613 CACTTTCTGAACACGAGATCTGC 59.877 47.826 0.00 0.00 0.00 4.26
3272 4205 3.122613 GCACTTTCTGAACACGAGATCTG 59.877 47.826 0.00 0.00 0.00 2.90
3273 4206 3.321497 GCACTTTCTGAACACGAGATCT 58.679 45.455 0.00 0.00 0.00 2.75
3274 4207 2.413453 GGCACTTTCTGAACACGAGATC 59.587 50.000 0.00 0.00 0.00 2.75
3275 4208 2.224281 TGGCACTTTCTGAACACGAGAT 60.224 45.455 0.00 0.00 0.00 2.75
3276 4209 1.138069 TGGCACTTTCTGAACACGAGA 59.862 47.619 0.00 0.00 0.00 4.04
3277 4210 1.581934 TGGCACTTTCTGAACACGAG 58.418 50.000 0.00 0.00 0.00 4.18
3278 4211 2.031258 TTGGCACTTTCTGAACACGA 57.969 45.000 0.00 0.00 0.00 4.35
3279 4212 3.354089 AATTGGCACTTTCTGAACACG 57.646 42.857 0.00 0.00 0.00 4.49
3280 4213 4.229876 GCTAATTGGCACTTTCTGAACAC 58.770 43.478 9.17 0.00 0.00 3.32
3281 4214 3.888323 TGCTAATTGGCACTTTCTGAACA 59.112 39.130 13.03 0.00 37.29 3.18
3282 4215 4.503741 TGCTAATTGGCACTTTCTGAAC 57.496 40.909 13.03 0.00 37.29 3.18
3292 4225 4.056740 CAAATTGTGTGTGCTAATTGGCA 58.943 39.130 13.03 13.03 40.15 4.92
3293 4226 3.120580 GCAAATTGTGTGTGCTAATTGGC 60.121 43.478 6.88 6.88 34.65 4.52
3294 4227 4.309099 AGCAAATTGTGTGTGCTAATTGG 58.691 39.130 0.00 0.00 46.52 3.16
3322 4255 8.181573 GCATCGAGAGTGGTTTAATCAAATAAA 58.818 33.333 0.00 0.00 0.00 1.40
3323 4256 7.552687 AGCATCGAGAGTGGTTTAATCAAATAA 59.447 33.333 0.00 0.00 0.00 1.40
3324 4257 7.047891 AGCATCGAGAGTGGTTTAATCAAATA 58.952 34.615 0.00 0.00 0.00 1.40
3325 4258 5.882557 AGCATCGAGAGTGGTTTAATCAAAT 59.117 36.000 0.00 0.00 0.00 2.32
3326 4259 5.245531 AGCATCGAGAGTGGTTTAATCAAA 58.754 37.500 0.00 0.00 0.00 2.69
3327 4260 4.832248 AGCATCGAGAGTGGTTTAATCAA 58.168 39.130 0.00 0.00 0.00 2.57
3328 4261 4.471904 AGCATCGAGAGTGGTTTAATCA 57.528 40.909 0.00 0.00 0.00 2.57
3329 4262 5.050702 GCTAAGCATCGAGAGTGGTTTAATC 60.051 44.000 7.20 0.00 38.20 1.75
3330 4263 4.811557 GCTAAGCATCGAGAGTGGTTTAAT 59.188 41.667 7.20 0.00 38.20 1.40
3331 4264 4.081642 AGCTAAGCATCGAGAGTGGTTTAA 60.082 41.667 7.20 0.00 38.20 1.52
3332 4265 3.447586 AGCTAAGCATCGAGAGTGGTTTA 59.552 43.478 7.20 0.00 38.20 2.01
3333 4266 2.234908 AGCTAAGCATCGAGAGTGGTTT 59.765 45.455 7.20 0.00 38.20 3.27
3334 4267 1.827969 AGCTAAGCATCGAGAGTGGTT 59.172 47.619 7.09 7.09 40.13 3.67
3335 4268 1.407258 GAGCTAAGCATCGAGAGTGGT 59.593 52.381 0.00 0.00 0.00 4.16
3336 4269 1.680735 AGAGCTAAGCATCGAGAGTGG 59.319 52.381 0.00 0.00 0.00 4.00
3337 4270 3.435105 AAGAGCTAAGCATCGAGAGTG 57.565 47.619 0.00 0.00 0.00 3.51
3338 4271 3.004315 GCTAAGAGCTAAGCATCGAGAGT 59.996 47.826 9.66 0.00 38.45 3.24
3339 4272 3.004210 TGCTAAGAGCTAAGCATCGAGAG 59.996 47.826 12.51 0.00 43.56 3.20
3340 4273 2.952310 TGCTAAGAGCTAAGCATCGAGA 59.048 45.455 12.51 0.00 43.56 4.04
3341 4274 3.361794 TGCTAAGAGCTAAGCATCGAG 57.638 47.619 12.51 0.00 43.56 4.04
3347 4280 9.429359 TCTATTAAATCATGCTAAGAGCTAAGC 57.571 33.333 7.98 7.98 42.97 3.09
3351 4284 9.618890 TTTGTCTATTAAATCATGCTAAGAGCT 57.381 29.630 0.00 0.00 42.97 4.09
3368 4301 8.918202 TGTGACACCTAGAATTTTTGTCTATT 57.082 30.769 2.45 0.00 37.94 1.73
3369 4302 8.918202 TTGTGACACCTAGAATTTTTGTCTAT 57.082 30.769 2.45 0.00 37.94 1.98
3370 4303 8.918202 ATTGTGACACCTAGAATTTTTGTCTA 57.082 30.769 2.45 0.00 37.94 2.59
3371 4304 7.823745 ATTGTGACACCTAGAATTTTTGTCT 57.176 32.000 2.45 0.00 37.94 3.41
3384 4317 8.934023 TCCTTCTTTTAATTATTGTGACACCT 57.066 30.769 2.45 0.00 0.00 4.00
3410 4343 8.895737 CCGCTTGGGTTTCTAATAAACTTATTA 58.104 33.333 0.00 2.73 35.20 0.98
3411 4344 7.768240 CCGCTTGGGTTTCTAATAAACTTATT 58.232 34.615 0.00 0.69 37.19 1.40
3412 4345 7.329588 CCGCTTGGGTTTCTAATAAACTTAT 57.670 36.000 0.00 0.00 0.00 1.73
3413 4346 6.746745 CCGCTTGGGTTTCTAATAAACTTA 57.253 37.500 0.00 0.00 0.00 2.24
3414 4347 5.638596 CCGCTTGGGTTTCTAATAAACTT 57.361 39.130 0.00 0.00 0.00 2.66
3429 4362 4.101448 AGTAGGCAGCCCGCTTGG 62.101 66.667 8.22 0.00 41.91 3.61
3430 4363 2.512515 GAGTAGGCAGCCCGCTTG 60.513 66.667 8.22 0.00 41.91 4.01
3431 4364 3.787001 GGAGTAGGCAGCCCGCTT 61.787 66.667 8.22 0.00 41.91 4.68
3435 4368 3.015145 TTGGGGAGTAGGCAGCCC 61.015 66.667 8.22 0.00 41.28 5.19
3436 4369 1.562672 TTCTTGGGGAGTAGGCAGCC 61.563 60.000 1.84 1.84 0.00 4.85
3437 4370 0.328258 TTTCTTGGGGAGTAGGCAGC 59.672 55.000 0.00 0.00 0.00 5.25
3438 4371 1.630878 ACTTTCTTGGGGAGTAGGCAG 59.369 52.381 0.00 0.00 0.00 4.85
3439 4372 1.628846 GACTTTCTTGGGGAGTAGGCA 59.371 52.381 0.00 0.00 0.00 4.75
3440 4373 1.909986 AGACTTTCTTGGGGAGTAGGC 59.090 52.381 0.00 0.00 0.00 3.93
3441 4374 3.707102 CCTAGACTTTCTTGGGGAGTAGG 59.293 52.174 0.00 0.00 36.05 3.18
3464 4397 0.822811 GACTCGGGAGGTAAGGGAAC 59.177 60.000 0.00 0.00 0.00 3.62
3465 4398 0.325016 GGACTCGGGAGGTAAGGGAA 60.325 60.000 0.00 0.00 0.00 3.97
3466 4399 1.309006 GGACTCGGGAGGTAAGGGA 59.691 63.158 0.00 0.00 0.00 4.20
3467 4400 1.761271 GGGACTCGGGAGGTAAGGG 60.761 68.421 0.00 0.00 0.00 3.95
3468 4401 2.125961 CGGGACTCGGGAGGTAAGG 61.126 68.421 0.00 0.00 34.75 2.69
3469 4402 2.783288 GCGGGACTCGGGAGGTAAG 61.783 68.421 0.00 0.00 39.69 2.34
3470 4403 1.925285 TAGCGGGACTCGGGAGGTAA 61.925 60.000 0.00 0.00 39.69 2.85
3471 4404 1.925285 TTAGCGGGACTCGGGAGGTA 61.925 60.000 0.00 0.00 39.69 3.08
3472 4405 2.584873 ATTAGCGGGACTCGGGAGGT 62.585 60.000 0.00 0.00 39.69 3.85
3473 4406 1.833049 ATTAGCGGGACTCGGGAGG 60.833 63.158 0.00 0.00 39.69 4.30
3474 4407 1.364171 CATTAGCGGGACTCGGGAG 59.636 63.158 0.00 0.00 39.69 4.30
3475 4408 2.792947 GCATTAGCGGGACTCGGGA 61.793 63.158 0.00 0.00 39.69 5.14
3476 4409 2.280186 GCATTAGCGGGACTCGGG 60.280 66.667 0.00 0.00 39.69 5.14
3477 4410 2.280186 GGCATTAGCGGGACTCGG 60.280 66.667 0.00 0.00 43.41 4.63
3478 4411 2.658593 CGGCATTAGCGGGACTCG 60.659 66.667 0.00 0.00 43.41 4.18
3479 4412 2.967615 GCGGCATTAGCGGGACTC 60.968 66.667 0.00 0.00 43.41 3.36
3480 4413 4.547367 GGCGGCATTAGCGGGACT 62.547 66.667 3.07 0.00 43.41 3.85
3497 4430 3.996744 GAGACGAAGCGGACCGACG 62.997 68.421 20.50 20.56 0.00 5.12
3498 4431 2.202453 GAGACGAAGCGGACCGAC 60.202 66.667 20.50 9.27 0.00 4.79
3499 4432 3.437795 GGAGACGAAGCGGACCGA 61.438 66.667 20.50 0.00 0.00 4.69
3511 4444 2.732619 CCCTAAGGCCACCGGAGAC 61.733 68.421 9.46 0.00 0.00 3.36
3512 4445 2.365105 CCCTAAGGCCACCGGAGA 60.365 66.667 9.46 0.00 0.00 3.71
3530 4463 3.460672 ATCTACCACGCCGCCATGG 62.461 63.158 7.63 7.63 42.13 3.66
3531 4464 1.956170 GATCTACCACGCCGCCATG 60.956 63.158 0.00 0.00 0.00 3.66
3532 4465 1.686325 AAGATCTACCACGCCGCCAT 61.686 55.000 0.00 0.00 0.00 4.40
3533 4466 2.355986 AAGATCTACCACGCCGCCA 61.356 57.895 0.00 0.00 0.00 5.69
3534 4467 1.883084 CAAGATCTACCACGCCGCC 60.883 63.158 0.00 0.00 0.00 6.13
3535 4468 1.883084 CCAAGATCTACCACGCCGC 60.883 63.158 0.00 0.00 0.00 6.53
3536 4469 1.883084 GCCAAGATCTACCACGCCG 60.883 63.158 0.00 0.00 0.00 6.46
3537 4470 1.523938 GGCCAAGATCTACCACGCC 60.524 63.158 0.00 0.00 0.00 5.68
3538 4471 1.523938 GGGCCAAGATCTACCACGC 60.524 63.158 4.39 0.00 0.00 5.34
3539 4472 0.541863 AAGGGCCAAGATCTACCACG 59.458 55.000 6.18 0.00 0.00 4.94
3540 4473 1.559682 TCAAGGGCCAAGATCTACCAC 59.440 52.381 6.18 0.00 0.00 4.16
3541 4474 1.559682 GTCAAGGGCCAAGATCTACCA 59.440 52.381 6.18 0.00 0.00 3.25
3542 4475 1.559682 TGTCAAGGGCCAAGATCTACC 59.440 52.381 6.18 0.00 0.00 3.18
3543 4476 3.010420 GTTGTCAAGGGCCAAGATCTAC 58.990 50.000 6.18 2.21 0.00 2.59
3544 4477 2.354704 CGTTGTCAAGGGCCAAGATCTA 60.355 50.000 6.18 0.00 0.00 1.98
3545 4478 1.611673 CGTTGTCAAGGGCCAAGATCT 60.612 52.381 6.18 0.00 0.00 2.75
3546 4479 0.804989 CGTTGTCAAGGGCCAAGATC 59.195 55.000 6.18 0.00 0.00 2.75
3547 4480 0.400213 TCGTTGTCAAGGGCCAAGAT 59.600 50.000 6.18 0.00 0.00 2.40
3548 4481 0.250295 CTCGTTGTCAAGGGCCAAGA 60.250 55.000 6.18 0.00 0.00 3.02
3549 4482 0.250295 TCTCGTTGTCAAGGGCCAAG 60.250 55.000 6.18 0.00 0.00 3.61
3550 4483 0.250295 CTCTCGTTGTCAAGGGCCAA 60.250 55.000 6.18 0.00 0.00 4.52
3551 4484 1.371183 CTCTCGTTGTCAAGGGCCA 59.629 57.895 6.18 0.00 0.00 5.36
3552 4485 1.376037 CCTCTCGTTGTCAAGGGCC 60.376 63.158 0.00 0.00 0.00 5.80
3553 4486 1.376037 CCCTCTCGTTGTCAAGGGC 60.376 63.158 5.48 0.00 41.98 5.19
3555 4488 0.390472 GAGCCCTCTCGTTGTCAAGG 60.390 60.000 0.00 0.00 0.00 3.61
3556 4489 0.605589 AGAGCCCTCTCGTTGTCAAG 59.394 55.000 0.00 0.00 44.02 3.02
3557 4490 0.318441 CAGAGCCCTCTCGTTGTCAA 59.682 55.000 0.00 0.00 44.02 3.18
3558 4491 0.827925 ACAGAGCCCTCTCGTTGTCA 60.828 55.000 0.00 0.00 44.02 3.58
3559 4492 0.318762 AACAGAGCCCTCTCGTTGTC 59.681 55.000 10.30 0.00 44.02 3.18
3560 4493 0.759346 AAACAGAGCCCTCTCGTTGT 59.241 50.000 11.25 0.06 44.02 3.32
3561 4494 1.801178 GAAAACAGAGCCCTCTCGTTG 59.199 52.381 11.25 0.00 44.02 4.10
3562 4495 1.605712 CGAAAACAGAGCCCTCTCGTT 60.606 52.381 0.00 1.90 44.02 3.85
3563 4496 0.038159 CGAAAACAGAGCCCTCTCGT 60.038 55.000 0.00 0.00 44.02 4.18
3564 4497 0.737715 CCGAAAACAGAGCCCTCTCG 60.738 60.000 0.00 0.00 44.02 4.04
3565 4498 0.321996 ACCGAAAACAGAGCCCTCTC 59.678 55.000 0.00 0.00 37.98 3.20
3566 4499 0.765510 AACCGAAAACAGAGCCCTCT 59.234 50.000 0.00 0.00 41.37 3.69
3567 4500 0.875059 CAACCGAAAACAGAGCCCTC 59.125 55.000 0.00 0.00 0.00 4.30
3568 4501 0.182775 ACAACCGAAAACAGAGCCCT 59.817 50.000 0.00 0.00 0.00 5.19
3569 4502 1.029681 AACAACCGAAAACAGAGCCC 58.970 50.000 0.00 0.00 0.00 5.19
3570 4503 2.863401 AAACAACCGAAAACAGAGCC 57.137 45.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.