Multiple sequence alignment - TraesCS1A01G239300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G239300 chr1A 100.000 5729 0 0 1 5729 426538127 426532399 0.000000e+00 10580.0
1 TraesCS1A01G239300 chr1B 92.315 1978 87 19 2868 4813 444059380 444057436 0.000000e+00 2750.0
2 TraesCS1A01G239300 chr1B 93.120 1904 86 14 2932 4810 442958273 442960156 0.000000e+00 2748.0
3 TraesCS1A01G239300 chr1B 92.561 1640 68 14 3125 4728 442963691 442965312 0.000000e+00 2303.0
4 TraesCS1A01G239300 chr1B 92.472 1408 77 17 3140 4543 661994820 661996202 0.000000e+00 1986.0
5 TraesCS1A01G239300 chr1B 84.132 1336 126 38 1 1317 442952415 442953683 0.000000e+00 1214.0
6 TraesCS1A01G239300 chr1B 83.985 1330 142 32 1 1317 444062578 444061307 0.000000e+00 1210.0
7 TraesCS1A01G239300 chr1B 86.047 387 37 8 1923 2294 442957006 442957390 3.220000e-107 399.0
8 TraesCS1A01G239300 chr1B 90.417 240 19 4 1089 1328 661990227 661990462 4.310000e-81 313.0
9 TraesCS1A01G239300 chr1B 88.341 223 12 5 2932 3142 442963388 442963608 7.370000e-64 255.0
10 TraesCS1A01G239300 chr1B 97.778 135 3 0 5576 5710 444004318 444004184 3.450000e-57 233.0
11 TraesCS1A01G239300 chr1B 84.404 218 23 7 2293 2506 661991237 661991447 2.710000e-48 204.0
12 TraesCS1A01G239300 chr1B 80.085 236 27 9 2379 2602 444060186 444059959 2.140000e-34 158.0
13 TraesCS1A01G239300 chr1B 95.699 93 4 0 4809 4901 444056624 444056532 3.580000e-32 150.0
14 TraesCS1A01G239300 chr1B 94.624 93 5 0 4809 4901 442960971 442961063 1.660000e-30 145.0
15 TraesCS1A01G239300 chr1D 93.779 1752 59 17 2974 4706 329489879 329488159 0.000000e+00 2586.0
16 TraesCS1A01G239300 chr1D 92.491 1425 80 10 3132 4543 475888401 475889811 0.000000e+00 2013.0
17 TraesCS1A01G239300 chr1D 87.183 1303 120 26 37 1317 329492968 329491691 0.000000e+00 1437.0
18 TraesCS1A01G239300 chr1D 91.917 433 29 1 5135 5567 329482111 329481685 8.210000e-168 601.0
19 TraesCS1A01G239300 chr1D 81.878 607 71 14 1808 2383 329491204 329490606 5.190000e-130 475.0
20 TraesCS1A01G239300 chr1D 84.130 460 35 21 841 1296 475886611 475887036 1.490000e-110 411.0
21 TraesCS1A01G239300 chr1D 94.624 186 7 2 4817 5000 329483039 329482855 9.400000e-73 285.0
22 TraesCS1A01G239300 chr1D 95.556 135 6 0 5576 5710 329480971 329480837 3.480000e-52 217.0
23 TraesCS1A01G239300 chr7D 100.000 33 0 0 1497 1529 52709570 52709538 1.720000e-05 62.1
24 TraesCS1A01G239300 chr7D 100.000 33 0 0 1497 1529 573462773 573462741 1.720000e-05 62.1
25 TraesCS1A01G239300 chr5B 100.000 30 0 0 1497 1526 508786091 508786120 8.020000e-04 56.5
26 TraesCS1A01G239300 chr5B 100.000 30 0 0 1497 1526 508788254 508788283 8.020000e-04 56.5
27 TraesCS1A01G239300 chr5B 100.000 30 0 0 1497 1526 508790107 508790136 8.020000e-04 56.5
28 TraesCS1A01G239300 chr5B 100.000 30 0 0 1497 1526 508791961 508791990 8.020000e-04 56.5
29 TraesCS1A01G239300 chr5B 100.000 28 0 0 1499 1526 508794121 508794148 1.000000e-02 52.8
30 TraesCS1A01G239300 chr2D 100.000 30 0 0 1497 1526 634273914 634273885 8.020000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G239300 chr1A 426532399 426538127 5728 True 10580.000000 10580 100.000000 1 5729 1 chr1A.!!$R1 5728
1 TraesCS1A01G239300 chr1B 442952415 442965312 12897 False 1177.333333 2748 89.804167 1 4901 6 chr1B.!!$F1 4900
2 TraesCS1A01G239300 chr1B 444056532 444062578 6046 True 1067.000000 2750 88.021000 1 4901 4 chr1B.!!$R2 4900
3 TraesCS1A01G239300 chr1B 661990227 661996202 5975 False 834.333333 1986 89.097667 1089 4543 3 chr1B.!!$F2 3454
4 TraesCS1A01G239300 chr1D 329488159 329492968 4809 True 1499.333333 2586 87.613333 37 4706 3 chr1D.!!$R2 4669
5 TraesCS1A01G239300 chr1D 475886611 475889811 3200 False 1212.000000 2013 88.310500 841 4543 2 chr1D.!!$F1 3702
6 TraesCS1A01G239300 chr1D 329480837 329483039 2202 True 367.666667 601 94.032333 4817 5710 3 chr1D.!!$R1 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 720 0.530744 TAGGGATGAGTGTGTGCGTC 59.469 55.000 0.0 0.00 0.00 5.19 F
1417 1543 0.163788 GACTTGACATCGGTTGCACG 59.836 55.000 0.0 0.00 0.00 5.34 F
1469 1622 0.449388 GGCCTAGCGATGCATATTGC 59.551 55.000 0.0 4.38 45.29 3.56 F
1501 1654 0.597072 ACTTCCTCCGTTCGAGTGTC 59.403 55.000 0.0 0.00 36.82 3.67 F
1503 1656 1.000607 CTTCCTCCGTTCGAGTGTCAA 60.001 52.381 0.0 0.00 36.82 3.18 F
2188 5199 1.005097 TCTGCTGCCTTGGATGACATT 59.995 47.619 0.0 0.00 0.00 2.71 F
3460 10324 1.403814 CCAAGCCTCATACCTCTCGA 58.596 55.000 0.0 0.00 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 5178 0.035725 TGTCATCCAAGGCAGCAGAG 60.036 55.000 0.00 0.00 0.00 3.35 R
2896 9294 0.608640 AGCCACCGAGTTAACCTCTG 59.391 55.000 0.88 0.00 38.11 3.35 R
3460 10324 2.742372 GCCGAGGAACACGCACAT 60.742 61.111 0.00 0.00 42.01 3.21 R
3513 10377 0.809241 CGAGCTCCTTGAGGATGCAC 60.809 60.000 8.47 12.85 44.46 4.57 R
3666 10530 0.545171 ACGAGAGGATGTAGACCGGA 59.455 55.000 9.46 0.00 0.00 5.14 R
4170 11034 0.976641 TCTCCTTGCCGATGTTGAGT 59.023 50.000 0.00 0.00 0.00 3.41 R
5414 16261 0.407139 AGCCCCTTCTGCAACTCATT 59.593 50.000 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 8.285891 ACAAAATGGGAAACATATATACCCTCA 58.714 33.333 0.00 0.53 39.40 3.86
125 126 6.295916 GGGAAACATATATACCCTCAGTCCTG 60.296 46.154 0.00 0.00 37.75 3.86
140 141 6.712547 CCTCAGTCCTGAAATAAGTGTCTTTT 59.287 38.462 0.00 0.00 39.39 2.27
320 329 9.537192 TTATAATTCCAGTTATGTTACGGAGTG 57.463 33.333 0.00 0.00 45.73 3.51
332 341 4.277174 TGTTACGGAGTGCATGTTTTTCAT 59.723 37.500 0.00 0.00 45.73 2.57
333 342 5.219633 GTTACGGAGTGCATGTTTTTCATT 58.780 37.500 0.00 0.00 45.73 2.57
334 343 4.320608 ACGGAGTGCATGTTTTTCATTT 57.679 36.364 0.00 0.00 42.51 2.32
335 344 4.692228 ACGGAGTGCATGTTTTTCATTTT 58.308 34.783 0.00 0.00 42.51 1.82
337 346 6.454795 ACGGAGTGCATGTTTTTCATTTTAT 58.545 32.000 0.00 0.00 42.51 1.40
338 347 6.928492 ACGGAGTGCATGTTTTTCATTTTATT 59.072 30.769 0.00 0.00 42.51 1.40
339 348 7.440856 ACGGAGTGCATGTTTTTCATTTTATTT 59.559 29.630 0.00 0.00 42.51 1.40
341 350 9.597999 GGAGTGCATGTTTTTCATTTTATTTTC 57.402 29.630 0.00 0.00 34.09 2.29
406 417 2.752903 GTTGGCCACTAAGTAATGGGTG 59.247 50.000 3.88 0.00 36.41 4.61
412 423 4.023291 CCACTAAGTAATGGGTGGCAAAT 58.977 43.478 0.00 0.00 41.87 2.32
544 562 4.505390 CCCGGGTTCAAGTCCTAAACTTTA 60.505 45.833 14.18 0.00 46.26 1.85
550 568 6.293462 GGTTCAAGTCCTAAACTTTAGCACAG 60.293 42.308 5.58 0.00 46.26 3.66
569 588 2.878406 CAGGTGGTCGTGTTTTTCTGAT 59.122 45.455 0.00 0.00 0.00 2.90
577 596 8.813282 GTGGTCGTGTTTTTCTGATTTTATTTT 58.187 29.630 0.00 0.00 0.00 1.82
628 647 7.399523 GCGACTTCGTCAATTTTAAGATATGT 58.600 34.615 0.00 0.00 42.22 2.29
654 673 4.796946 GCTCATCTCTAGAAGGTGCTCATG 60.797 50.000 0.00 0.00 35.93 3.07
662 681 1.926426 AAGGTGCTCATGGGGGTAGC 61.926 60.000 0.00 0.00 36.77 3.58
687 706 1.347707 GCATCCGTGGATTCATAGGGA 59.652 52.381 0.00 4.68 31.62 4.20
689 708 3.603532 CATCCGTGGATTCATAGGGATG 58.396 50.000 18.91 18.91 39.42 3.51
697 716 4.141642 TGGATTCATAGGGATGAGTGTGTG 60.142 45.833 0.00 0.00 43.03 3.82
698 717 2.988010 TCATAGGGATGAGTGTGTGC 57.012 50.000 0.00 0.00 37.15 4.57
700 719 1.134699 CATAGGGATGAGTGTGTGCGT 60.135 52.381 0.00 0.00 34.73 5.24
701 720 0.530744 TAGGGATGAGTGTGTGCGTC 59.469 55.000 0.00 0.00 0.00 5.19
702 721 1.005037 GGGATGAGTGTGTGCGTCA 60.005 57.895 0.00 0.00 0.00 4.35
706 740 1.224069 ATGAGTGTGTGCGTCAGTGC 61.224 55.000 0.00 0.00 0.00 4.40
734 768 3.243975 TATGTGATCATCTGCGTCTGCAT 60.244 43.478 0.00 0.00 41.73 3.96
735 769 5.089892 TATGTGATCATCTGCGTCTGCATC 61.090 45.833 0.00 0.00 41.73 3.91
905 955 6.352016 TGATAATGATAGAGAAGGCCACTC 57.648 41.667 18.32 18.32 34.95 3.51
986 1037 1.927487 AAATTGGGAGTGCATGCTGA 58.073 45.000 20.33 0.00 0.00 4.26
1003 1054 2.813754 GCTGATTCAGTACAAGGCACAA 59.186 45.455 14.90 0.00 33.43 3.33
1008 1059 1.210722 TCAGTACAAGGCACAACCACA 59.789 47.619 0.00 0.00 43.14 4.17
1014 1065 1.675720 AAGGCACAACCACAAGCACC 61.676 55.000 0.00 0.00 43.14 5.01
1019 1070 1.361271 CAACCACAAGCACCTGCAG 59.639 57.895 6.78 6.78 45.16 4.41
1020 1071 2.492773 AACCACAAGCACCTGCAGC 61.493 57.895 8.66 0.00 45.16 5.25
1021 1072 3.677648 CCACAAGCACCTGCAGCC 61.678 66.667 8.66 0.00 45.16 4.85
1022 1073 4.034258 CACAAGCACCTGCAGCCG 62.034 66.667 8.66 1.73 45.16 5.52
1129 1181 4.024048 CAGAACTAGCTAGCAGTAGAGCTC 60.024 50.000 20.91 5.27 46.08 4.09
1350 1405 8.716646 TCCAACTCTAATTATATGTGTGTGTG 57.283 34.615 0.00 0.00 0.00 3.82
1352 1407 8.390354 CCAACTCTAATTATATGTGTGTGTGTG 58.610 37.037 0.00 0.00 0.00 3.82
1367 1435 8.126700 TGTGTGTGTGTGTCTATATATAGAACG 58.873 37.037 21.45 0.00 40.77 3.95
1384 1452 5.997384 AGAACGTAATAACCTGAGTCCTT 57.003 39.130 0.00 0.00 0.00 3.36
1399 1521 6.266330 CCTGAGTCCTTGATCATACTACATGA 59.734 42.308 0.00 0.00 0.00 3.07
1417 1543 0.163788 GACTTGACATCGGTTGCACG 59.836 55.000 0.00 0.00 0.00 5.34
1440 1570 5.801380 GGGTATATATGCTCCCGAAAAGAA 58.199 41.667 0.62 0.00 0.00 2.52
1446 1576 2.218603 TGCTCCCGAAAAGAAAGTCAC 58.781 47.619 0.00 0.00 0.00 3.67
1450 1580 4.152580 GCTCCCGAAAAGAAAGTCACTAAG 59.847 45.833 0.00 0.00 0.00 2.18
1454 1584 4.065789 CGAAAAGAAAGTCACTAAGGCCT 58.934 43.478 0.00 0.00 0.00 5.19
1456 1586 5.348997 CGAAAAGAAAGTCACTAAGGCCTAG 59.651 44.000 5.16 6.69 0.00 3.02
1457 1587 3.897141 AGAAAGTCACTAAGGCCTAGC 57.103 47.619 5.16 0.00 0.00 3.42
1458 1588 2.166664 AGAAAGTCACTAAGGCCTAGCG 59.833 50.000 5.16 0.00 0.00 4.26
1461 1614 1.683917 AGTCACTAAGGCCTAGCGATG 59.316 52.381 5.16 0.27 0.00 3.84
1465 1618 2.029020 CACTAAGGCCTAGCGATGCATA 60.029 50.000 5.16 0.00 0.00 3.14
1469 1622 0.449388 GGCCTAGCGATGCATATTGC 59.551 55.000 0.00 4.38 45.29 3.56
1470 1623 0.449388 GCCTAGCGATGCATATTGCC 59.551 55.000 12.83 0.00 44.23 4.52
1482 1635 4.709250 TGCATATTGCCCGAAATGTACTA 58.291 39.130 0.00 0.00 44.23 1.82
1484 1637 4.755123 GCATATTGCCCGAAATGTACTACT 59.245 41.667 0.00 0.00 37.42 2.57
1486 1639 6.565999 GCATATTGCCCGAAATGTACTACTTC 60.566 42.308 0.00 0.00 37.42 3.01
1487 1640 3.255969 TGCCCGAAATGTACTACTTCC 57.744 47.619 0.00 0.00 0.00 3.46
1489 1642 3.118884 TGCCCGAAATGTACTACTTCCTC 60.119 47.826 0.00 0.00 0.00 3.71
1490 1643 3.740452 GCCCGAAATGTACTACTTCCTCC 60.740 52.174 0.00 0.00 0.00 4.30
1495 1648 4.367386 AATGTACTACTTCCTCCGTTCG 57.633 45.455 0.00 0.00 0.00 3.95
1501 1654 0.597072 ACTTCCTCCGTTCGAGTGTC 59.403 55.000 0.00 0.00 36.82 3.67
1503 1656 1.000607 CTTCCTCCGTTCGAGTGTCAA 60.001 52.381 0.00 0.00 36.82 3.18
1505 1658 1.409790 TCCTCCGTTCGAGTGTCAAAA 59.590 47.619 0.00 0.00 36.82 2.44
1506 1659 2.159071 TCCTCCGTTCGAGTGTCAAAAA 60.159 45.455 0.00 0.00 36.82 1.94
1507 1660 2.033151 CCTCCGTTCGAGTGTCAAAAAC 60.033 50.000 0.00 0.00 36.82 2.43
1508 1661 1.589320 TCCGTTCGAGTGTCAAAAACG 59.411 47.619 0.00 0.00 41.60 3.60
1509 1662 1.372656 CGTTCGAGTGTCAAAAACGC 58.627 50.000 0.00 0.00 36.66 4.84
1532 1685 9.910511 ACGCTTTTATATTATAAAACAGACACG 57.089 29.630 14.71 13.27 0.00 4.49
1533 1686 9.910511 CGCTTTTATATTATAAAACAGACACGT 57.089 29.630 14.71 0.00 0.00 4.49
1548 1701 9.820229 AAACAGACACGTATACACAATTAAATG 57.180 29.630 3.32 0.00 0.00 2.32
1549 1702 8.542497 ACAGACACGTATACACAATTAAATGT 57.458 30.769 3.32 0.00 0.00 2.71
1550 1703 9.642327 ACAGACACGTATACACAATTAAATGTA 57.358 29.630 3.32 0.00 35.82 2.29
1551 1704 9.895894 CAGACACGTATACACAATTAAATGTAC 57.104 33.333 3.32 0.00 34.24 2.90
1552 1705 9.642327 AGACACGTATACACAATTAAATGTACA 57.358 29.630 0.00 0.00 34.24 2.90
1561 1714 8.792830 ACACAATTAAATGTACATAGCAGAGT 57.207 30.769 9.21 2.16 30.84 3.24
1562 1715 8.883731 ACACAATTAAATGTACATAGCAGAGTC 58.116 33.333 9.21 0.00 30.84 3.36
1563 1716 8.882736 CACAATTAAATGTACATAGCAGAGTCA 58.117 33.333 9.21 0.00 30.84 3.41
1564 1717 9.618890 ACAATTAAATGTACATAGCAGAGTCAT 57.381 29.630 9.21 0.00 0.00 3.06
1565 1718 9.874215 CAATTAAATGTACATAGCAGAGTCATG 57.126 33.333 9.21 0.00 0.00 3.07
1566 1719 5.998454 AAATGTACATAGCAGAGTCATGC 57.002 39.130 9.21 6.49 46.88 4.06
1574 1727 1.689959 GCAGAGTCATGCCGTTTTTG 58.310 50.000 0.00 0.00 40.43 2.44
1575 1728 1.666888 GCAGAGTCATGCCGTTTTTGG 60.667 52.381 0.00 0.00 40.43 3.28
1576 1729 1.608590 CAGAGTCATGCCGTTTTTGGT 59.391 47.619 0.00 0.00 0.00 3.67
1577 1730 1.880027 AGAGTCATGCCGTTTTTGGTC 59.120 47.619 0.00 0.00 0.00 4.02
1578 1731 1.606668 GAGTCATGCCGTTTTTGGTCA 59.393 47.619 0.00 0.00 0.00 4.02
1579 1732 1.608590 AGTCATGCCGTTTTTGGTCAG 59.391 47.619 0.00 0.00 0.00 3.51
1580 1733 1.606668 GTCATGCCGTTTTTGGTCAGA 59.393 47.619 0.00 0.00 0.00 3.27
1581 1734 2.034053 GTCATGCCGTTTTTGGTCAGAA 59.966 45.455 0.00 0.00 0.00 3.02
1582 1735 2.690497 TCATGCCGTTTTTGGTCAGAAA 59.310 40.909 0.00 0.00 0.00 2.52
1583 1736 3.131223 TCATGCCGTTTTTGGTCAGAAAA 59.869 39.130 0.00 0.00 0.00 2.29
1584 1737 3.594603 TGCCGTTTTTGGTCAGAAAAA 57.405 38.095 0.00 0.00 33.42 1.94
1585 1738 3.254892 TGCCGTTTTTGGTCAGAAAAAC 58.745 40.909 10.27 10.27 45.91 2.43
1607 1760 3.386768 AAGTACCGCATAGGCATACTG 57.613 47.619 12.50 0.00 46.52 2.74
1626 1779 8.616076 GCATACTGATAGTATATGGAAATTGCC 58.384 37.037 0.00 0.00 39.26 4.52
1627 1780 9.113838 CATACTGATAGTATATGGAAATTGCCC 57.886 37.037 0.00 0.00 39.26 5.36
1668 1827 7.648112 GGAAAAAGTGAGAAACCAGATTTACAC 59.352 37.037 0.00 0.00 37.66 2.90
1711 1870 7.534085 TGTAGATAGTATGTTTTTCTTGCCG 57.466 36.000 0.00 0.00 0.00 5.69
1712 1871 7.324935 TGTAGATAGTATGTTTTTCTTGCCGA 58.675 34.615 0.00 0.00 0.00 5.54
1722 1968 5.410439 TGTTTTTCTTGCCGAGGTAGATAAC 59.590 40.000 0.00 3.95 0.00 1.89
1728 1974 5.831525 TCTTGCCGAGGTAGATAACAGATTA 59.168 40.000 0.00 0.00 0.00 1.75
1742 1995 9.159254 AGATAACAGATTATGATTAGGTGGTCA 57.841 33.333 0.00 0.00 30.77 4.02
1743 1996 9.950496 GATAACAGATTATGATTAGGTGGTCAT 57.050 33.333 0.00 0.00 38.53 3.06
1746 1999 7.448420 ACAGATTATGATTAGGTGGTCATCAG 58.552 38.462 0.00 0.00 36.53 2.90
1747 2000 7.290948 ACAGATTATGATTAGGTGGTCATCAGA 59.709 37.037 0.00 0.00 36.53 3.27
1753 2006 7.724490 TGATTAGGTGGTCATCAGATATAGG 57.276 40.000 0.00 0.00 0.00 2.57
1754 2007 7.478721 TGATTAGGTGGTCATCAGATATAGGA 58.521 38.462 0.00 0.00 0.00 2.94
1755 2008 7.955750 TGATTAGGTGGTCATCAGATATAGGAA 59.044 37.037 0.00 0.00 0.00 3.36
1756 2009 8.742125 ATTAGGTGGTCATCAGATATAGGAAA 57.258 34.615 0.00 0.00 0.00 3.13
1757 2010 6.426646 AGGTGGTCATCAGATATAGGAAAC 57.573 41.667 0.00 0.00 0.00 2.78
1781 2034 3.718723 ACAGAGCAGAGAGATTAAGGGT 58.281 45.455 0.00 0.00 0.00 4.34
1784 2037 5.902431 ACAGAGCAGAGAGATTAAGGGTTAT 59.098 40.000 0.00 0.00 0.00 1.89
1803 2056 6.183360 GGGTTATGGTTCCTGCTAAAATTCTC 60.183 42.308 0.00 0.00 0.00 2.87
1806 2059 8.470002 GTTATGGTTCCTGCTAAAATTCTCAAT 58.530 33.333 0.00 0.00 0.00 2.57
1829 2103 1.811965 TGGATCTGTGATTGTTTGGCG 59.188 47.619 0.00 0.00 0.00 5.69
1830 2104 1.133025 GGATCTGTGATTGTTTGGCGG 59.867 52.381 0.00 0.00 0.00 6.13
1833 2107 1.071542 TCTGTGATTGTTTGGCGGAGA 59.928 47.619 0.00 0.00 0.00 3.71
1836 2110 2.487762 TGTGATTGTTTGGCGGAGATTC 59.512 45.455 0.00 0.00 0.00 2.52
1840 2114 2.396590 TGTTTGGCGGAGATTCTACC 57.603 50.000 0.00 0.00 0.00 3.18
1853 2127 8.630278 CGGAGATTCTACCGTAATTATTATGG 57.370 38.462 18.70 18.70 45.82 2.74
2005 4996 4.400251 TGGTGAGCAATCTCCAAATCATTC 59.600 41.667 0.00 0.00 38.58 2.67
2015 5014 6.477053 TCTCCAAATCATTCCAGAGTAGAG 57.523 41.667 0.00 0.00 0.00 2.43
2016 5015 6.197903 TCTCCAAATCATTCCAGAGTAGAGA 58.802 40.000 0.00 0.00 0.00 3.10
2017 5016 6.323482 TCTCCAAATCATTCCAGAGTAGAGAG 59.677 42.308 0.00 0.00 0.00 3.20
2022 5021 3.894427 TCATTCCAGAGTAGAGAGGATGC 59.106 47.826 0.00 0.00 0.00 3.91
2043 5050 2.289820 CTGGCGATCAATTCAGACCATG 59.710 50.000 0.00 0.00 0.00 3.66
2167 5178 2.604174 CCTGACGTTGTCAACCCGC 61.604 63.158 10.12 0.78 42.26 6.13
2177 5188 4.711949 CAACCCGCTCTGCTGCCT 62.712 66.667 0.00 0.00 0.00 4.75
2188 5199 1.005097 TCTGCTGCCTTGGATGACATT 59.995 47.619 0.00 0.00 0.00 2.71
2239 5278 8.853345 CACTAAGAATTTACTAGACGCGTTTTA 58.147 33.333 15.53 8.78 0.00 1.52
2253 5292 7.934457 AGACGCGTTTTATAGACCTAGAATAA 58.066 34.615 15.53 0.00 0.00 1.40
2255 5294 7.144000 ACGCGTTTTATAGACCTAGAATAAGG 58.856 38.462 5.58 0.00 42.82 2.69
2257 5296 8.027771 CGCGTTTTATAGACCTAGAATAAGGAT 58.972 37.037 0.00 0.00 39.15 3.24
2265 5304 7.775053 AGACCTAGAATAAGGATGAGTCATC 57.225 40.000 22.69 22.69 39.15 2.92
2286 5325 2.109229 ATCGTGGAAGGATCCTGGAT 57.891 50.000 17.02 9.42 46.70 3.41
2290 5329 5.185027 ATCGTGGAAGGATCCTGGATACAA 61.185 45.833 20.86 0.00 42.13 2.41
2291 5330 6.636139 ATCGTGGAAGGATCCTGGATACAAA 61.636 44.000 20.86 0.00 42.13 2.83
2321 5360 3.880490 AGATGCTAGACTACCGACTCAAG 59.120 47.826 0.00 0.00 0.00 3.02
2424 5554 5.112686 TCAAACGCTAATTGTTTTTGGCTT 58.887 33.333 0.00 0.00 37.44 4.35
2449 5579 7.116075 TCCAAGCTTCATGTAGCCTTTTATTA 58.884 34.615 19.45 0.00 42.20 0.98
2525 5656 3.755965 TGTCGATGCGCAAATACAATT 57.244 38.095 17.11 0.00 0.00 2.32
2526 5657 4.866682 TGTCGATGCGCAAATACAATTA 57.133 36.364 17.11 0.00 0.00 1.40
2527 5658 5.416862 TGTCGATGCGCAAATACAATTAT 57.583 34.783 17.11 0.00 0.00 1.28
2702 8890 7.652524 TCGAAAATATTTTCCCAATCCATCA 57.347 32.000 27.32 4.06 42.66 3.07
2827 9029 7.819900 GGGTAACACATTTGGCATGTAATTTAA 59.180 33.333 0.00 0.00 39.74 1.52
2831 9033 7.449247 ACACATTTGGCATGTAATTTAAAGGT 58.551 30.769 0.00 0.00 0.00 3.50
2834 9036 9.651913 ACATTTGGCATGTAATTTAAAGGTTAG 57.348 29.630 0.00 0.00 0.00 2.34
2852 9054 7.568199 AGGTTAGCACATGATATTAACAACC 57.432 36.000 0.00 2.11 33.50 3.77
2853 9055 6.546034 AGGTTAGCACATGATATTAACAACCC 59.454 38.462 0.00 0.00 33.73 4.11
2854 9056 6.238925 GGTTAGCACATGATATTAACAACCCC 60.239 42.308 0.00 0.00 0.00 4.95
2855 9057 4.215109 AGCACATGATATTAACAACCCCC 58.785 43.478 0.00 0.00 0.00 5.40
2856 9058 3.957497 GCACATGATATTAACAACCCCCA 59.043 43.478 0.00 0.00 0.00 4.96
2859 9061 5.299279 CACATGATATTAACAACCCCCACTC 59.701 44.000 0.00 0.00 0.00 3.51
2860 9062 5.044476 ACATGATATTAACAACCCCCACTCA 60.044 40.000 0.00 0.00 0.00 3.41
2862 9064 5.893500 TGATATTAACAACCCCCACTCAAA 58.106 37.500 0.00 0.00 0.00 2.69
2865 9067 8.116669 TGATATTAACAACCCCCACTCAAAATA 58.883 33.333 0.00 0.00 0.00 1.40
2866 9068 8.903059 ATATTAACAACCCCCACTCAAAATAA 57.097 30.769 0.00 0.00 0.00 1.40
2867 9069 7.619512 ATTAACAACCCCCACTCAAAATAAA 57.380 32.000 0.00 0.00 0.00 1.40
2871 9073 5.221621 ACAACCCCCACTCAAAATAAACATG 60.222 40.000 0.00 0.00 0.00 3.21
2872 9074 4.746466 ACCCCCACTCAAAATAAACATGA 58.254 39.130 0.00 0.00 0.00 3.07
2873 9075 5.341169 ACCCCCACTCAAAATAAACATGAT 58.659 37.500 0.00 0.00 0.00 2.45
2874 9076 6.498538 ACCCCCACTCAAAATAAACATGATA 58.501 36.000 0.00 0.00 0.00 2.15
2875 9077 7.132128 ACCCCCACTCAAAATAAACATGATAT 58.868 34.615 0.00 0.00 0.00 1.63
2876 9078 7.623278 ACCCCCACTCAAAATAAACATGATATT 59.377 33.333 0.00 1.11 0.00 1.28
2877 9079 9.142014 CCCCCACTCAAAATAAACATGATATTA 57.858 33.333 0.00 0.00 0.00 0.98
3129 9993 8.736751 TTTAGATCGCTTGTAAATGGTTTTTC 57.263 30.769 0.00 0.00 0.00 2.29
3130 9994 5.390613 AGATCGCTTGTAAATGGTTTTTCG 58.609 37.500 0.00 0.00 0.00 3.46
3149 10013 8.424731 GTTTTTCGTAGAATTGCTTGTAAATGG 58.575 33.333 0.00 0.00 45.90 3.16
3460 10324 1.403814 CCAAGCCTCATACCTCTCGA 58.596 55.000 0.00 0.00 0.00 4.04
3928 10792 2.184322 GCATCGGCGAGAAGGTGA 59.816 61.111 17.22 0.00 0.00 4.02
4170 11034 1.015109 GTCTCGTGGAGCTCATCGTA 58.985 55.000 17.19 9.21 0.00 3.43
4202 11066 3.368948 GGCAAGGAGAAGAAGGTCAGTAG 60.369 52.174 0.00 0.00 0.00 2.57
4209 11073 5.394224 AGAAGAAGGTCAGTAGTACTTGC 57.606 43.478 0.00 0.00 0.00 4.01
4411 11293 2.872388 CGGAGATCGATGGGGTGGG 61.872 68.421 0.54 0.00 42.43 4.61
4457 11343 4.504864 CCGGCATAAACTCAGGGATTATCA 60.505 45.833 0.00 0.00 0.00 2.15
4459 11345 5.180117 CGGCATAAACTCAGGGATTATCAAG 59.820 44.000 0.00 0.00 0.00 3.02
4460 11346 5.048434 GGCATAAACTCAGGGATTATCAAGC 60.048 44.000 0.00 0.00 0.00 4.01
4461 11347 5.334414 GCATAAACTCAGGGATTATCAAGCG 60.334 44.000 0.00 0.00 0.00 4.68
4462 11348 2.918712 ACTCAGGGATTATCAAGCGG 57.081 50.000 0.00 0.00 0.00 5.52
4463 11349 2.119495 ACTCAGGGATTATCAAGCGGT 58.881 47.619 0.00 0.00 0.00 5.68
4464 11350 2.103263 ACTCAGGGATTATCAAGCGGTC 59.897 50.000 0.00 0.00 0.00 4.79
4465 11351 2.103094 CTCAGGGATTATCAAGCGGTCA 59.897 50.000 0.00 0.00 0.00 4.02
4466 11352 2.705658 TCAGGGATTATCAAGCGGTCAT 59.294 45.455 0.00 0.00 0.00 3.06
4467 11353 3.901222 TCAGGGATTATCAAGCGGTCATA 59.099 43.478 0.00 0.00 0.00 2.15
4468 11354 4.021104 TCAGGGATTATCAAGCGGTCATAG 60.021 45.833 0.00 0.00 0.00 2.23
4469 11355 4.021104 CAGGGATTATCAAGCGGTCATAGA 60.021 45.833 0.00 0.00 0.00 1.98
4470 11356 4.021016 AGGGATTATCAAGCGGTCATAGAC 60.021 45.833 0.00 0.00 0.00 2.59
4496 11382 3.878778 ACTCCATACTTTGGCAGTGATC 58.121 45.455 0.00 0.00 46.01 2.92
4506 11393 4.105727 CAGTGATCCTCGCTGCTG 57.894 61.111 4.90 0.00 46.30 4.41
4595 11489 2.993008 GAGGTCATGCAGGCAGGA 59.007 61.111 4.30 4.30 34.19 3.86
4597 11491 1.908340 GAGGTCATGCAGGCAGGAGT 61.908 60.000 9.07 0.00 37.42 3.85
4616 11510 4.819088 GGAGTTGCTCTGTTTTCTTCTTCT 59.181 41.667 0.00 0.00 0.00 2.85
4618 11512 6.370433 AGTTGCTCTGTTTTCTTCTTCTTC 57.630 37.500 0.00 0.00 0.00 2.87
4619 11513 6.118852 AGTTGCTCTGTTTTCTTCTTCTTCT 58.881 36.000 0.00 0.00 0.00 2.85
4620 11514 6.601217 AGTTGCTCTGTTTTCTTCTTCTTCTT 59.399 34.615 0.00 0.00 0.00 2.52
4621 11515 6.610741 TGCTCTGTTTTCTTCTTCTTCTTC 57.389 37.500 0.00 0.00 0.00 2.87
4622 11516 6.352516 TGCTCTGTTTTCTTCTTCTTCTTCT 58.647 36.000 0.00 0.00 0.00 2.85
4623 11517 6.825721 TGCTCTGTTTTCTTCTTCTTCTTCTT 59.174 34.615 0.00 0.00 0.00 2.52
4624 11518 7.011857 TGCTCTGTTTTCTTCTTCTTCTTCTTC 59.988 37.037 0.00 0.00 0.00 2.87
4625 11519 7.226523 GCTCTGTTTTCTTCTTCTTCTTCTTCT 59.773 37.037 0.00 0.00 0.00 2.85
4626 11520 9.108284 CTCTGTTTTCTTCTTCTTCTTCTTCTT 57.892 33.333 0.00 0.00 0.00 2.52
4627 11521 9.103861 TCTGTTTTCTTCTTCTTCTTCTTCTTC 57.896 33.333 0.00 0.00 0.00 2.87
4641 11535 3.866651 TCTTCTTCTTGTGGCTATCAGC 58.133 45.455 0.00 0.00 41.46 4.26
4656 11550 0.964700 TCAGCTATCCCTGAGCGATG 59.035 55.000 0.00 0.00 44.98 3.84
4749 11643 9.927081 AATTAACTCTGAATGATATCACCCTTT 57.073 29.630 7.78 0.00 0.00 3.11
4751 11645 5.128919 ACTCTGAATGATATCACCCTTTGC 58.871 41.667 7.78 0.00 0.00 3.68
4759 11653 6.061022 TGATATCACCCTTTGCTCTTGTTA 57.939 37.500 0.00 0.00 0.00 2.41
4765 11659 6.065374 TCACCCTTTGCTCTTGTTACAATAA 58.935 36.000 0.00 0.00 0.00 1.40
4768 11662 6.149633 CCCTTTGCTCTTGTTACAATAACAC 58.850 40.000 0.00 0.00 0.00 3.32
4797 11696 2.596346 TGGCAAGTTGTGACATCCAAT 58.404 42.857 4.48 0.00 41.83 3.16
4805 11704 5.591099 AGTTGTGACATCCAATGAACAAAC 58.409 37.500 11.61 8.30 39.82 2.93
4810 11709 5.920273 GTGACATCCAATGAACAAACGAATT 59.080 36.000 0.00 0.00 0.00 2.17
4813 11712 6.386654 ACATCCAATGAACAAACGAATTACC 58.613 36.000 0.00 0.00 0.00 2.85
4814 11713 6.015856 ACATCCAATGAACAAACGAATTACCA 60.016 34.615 0.00 0.00 0.00 3.25
4815 11714 6.007936 TCCAATGAACAAACGAATTACCAG 57.992 37.500 0.00 0.00 0.00 4.00
4869 12584 6.054941 TCTCAACTTAGTGATGCAACTGAAA 58.945 36.000 1.14 0.00 0.00 2.69
4925 12642 1.952296 CTGTTGCTTGAGCCTTTGAGT 59.048 47.619 0.00 0.00 41.18 3.41
4934 12651 2.816087 TGAGCCTTTGAGTTCTTGCATC 59.184 45.455 0.00 0.00 0.00 3.91
4960 12677 4.816385 TGTCACAAGTCAAGAGACCAAATC 59.184 41.667 0.00 0.00 46.15 2.17
4961 12678 4.058124 TCACAAGTCAAGAGACCAAATCG 58.942 43.478 0.00 0.00 46.15 3.34
5085 15636 5.357878 TGACTGGATTCATGCCATCTTAAAC 59.642 40.000 5.10 0.00 34.33 2.01
5086 15637 5.263599 ACTGGATTCATGCCATCTTAAACA 58.736 37.500 5.10 0.00 34.33 2.83
5087 15638 5.126061 ACTGGATTCATGCCATCTTAAACAC 59.874 40.000 5.10 0.00 34.33 3.32
5100 15653 3.391296 TCTTAAACACTGGCTCCTCTGTT 59.609 43.478 0.00 0.00 0.00 3.16
5102 15655 0.398318 AACACTGGCTCCTCTGTTCC 59.602 55.000 0.00 0.00 0.00 3.62
5106 15659 1.203313 ACTGGCTCCTCTGTTCCCTTA 60.203 52.381 0.00 0.00 0.00 2.69
5107 15660 1.909302 CTGGCTCCTCTGTTCCCTTAA 59.091 52.381 0.00 0.00 0.00 1.85
5126 15679 6.202331 CCTTAAATGGGGTTCCTAGGAAAAT 58.798 40.000 25.89 13.82 35.75 1.82
5164 16011 1.903404 AAGGAGCAGGCGGTTTTGG 60.903 57.895 0.00 0.00 0.00 3.28
5212 16059 3.869065 CAACGGCCTCTTAATGTTCCTA 58.131 45.455 0.00 0.00 0.00 2.94
5221 16068 4.832248 TCTTAATGTTCCTAGCCACACTG 58.168 43.478 0.00 0.00 0.00 3.66
5223 16070 2.479566 ATGTTCCTAGCCACACTGTG 57.520 50.000 6.19 6.19 0.00 3.66
5282 16129 6.753913 AATTCTCCCTGCTGATTATAGACA 57.246 37.500 0.00 0.00 0.00 3.41
5284 16131 6.753913 TTCTCCCTGCTGATTATAGACATT 57.246 37.500 0.00 0.00 0.00 2.71
5286 16133 6.528321 TCTCCCTGCTGATTATAGACATTTG 58.472 40.000 0.00 0.00 0.00 2.32
5287 16134 6.327365 TCTCCCTGCTGATTATAGACATTTGA 59.673 38.462 0.00 0.00 0.00 2.69
5314 16161 3.290948 TTTACTTGAAGGCACTGGTGT 57.709 42.857 0.00 0.00 40.86 4.16
5337 16184 1.463444 CGTTTTCTGATTCCACCGGTC 59.537 52.381 2.59 0.00 0.00 4.79
5339 16186 0.970640 TTTCTGATTCCACCGGTCGA 59.029 50.000 2.59 0.00 0.00 4.20
5394 16241 6.380846 TCCCATTAACATTGAGGAGGAAAATG 59.619 38.462 0.00 0.00 37.33 2.32
5399 16246 4.939255 ACATTGAGGAGGAAAATGTGGAT 58.061 39.130 0.00 0.00 41.67 3.41
5454 16301 5.516062 GGCTTCTTCCCTTTTACTCCCTTTA 60.516 44.000 0.00 0.00 0.00 1.85
5477 16326 5.590818 ACTTATCTTGGTCTACCTCTTGGA 58.409 41.667 0.02 0.00 36.82 3.53
5481 16330 5.208294 TCTTGGTCTACCTCTTGGACTAT 57.792 43.478 0.02 0.00 36.82 2.12
5524 16373 4.989279 ATATGCCCATTGTGTTCAGAAC 57.011 40.909 6.32 6.32 0.00 3.01
5571 16420 9.729281 TTTCTTGTTACTTAACCTATGGTAAGG 57.271 33.333 7.61 0.00 42.82 2.69
5573 16422 9.103582 TCTTGTTACTTAACCTATGGTAAGGAA 57.896 33.333 7.61 2.50 39.15 3.36
5574 16423 9.729281 CTTGTTACTTAACCTATGGTAAGGAAA 57.271 33.333 2.36 0.00 39.15 3.13
5597 17422 8.650143 AAAGGAAGCAAATTTACTATCAGGAA 57.350 30.769 0.00 0.00 0.00 3.36
5600 17425 8.548877 AGGAAGCAAATTTACTATCAGGAACTA 58.451 33.333 0.00 0.00 36.02 2.24
5649 17474 7.393216 AGGAAATATGCCTCTCTGTATCATTC 58.607 38.462 0.00 0.00 0.00 2.67
5710 17535 9.336171 GATAGATGATTGGATTATCTTAAGCCC 57.664 37.037 0.00 0.00 36.97 5.19
5711 17536 6.488715 AGATGATTGGATTATCTTAAGCCCC 58.511 40.000 0.00 0.00 32.33 5.80
5712 17537 4.651778 TGATTGGATTATCTTAAGCCCCG 58.348 43.478 0.00 0.00 0.00 5.73
5713 17538 2.561478 TGGATTATCTTAAGCCCCGC 57.439 50.000 0.00 0.00 0.00 6.13
5714 17539 1.771854 TGGATTATCTTAAGCCCCGCA 59.228 47.619 0.00 0.00 0.00 5.69
5715 17540 2.173782 TGGATTATCTTAAGCCCCGCAA 59.826 45.455 0.00 0.00 0.00 4.85
5716 17541 3.219281 GGATTATCTTAAGCCCCGCAAA 58.781 45.455 0.00 0.00 0.00 3.68
5717 17542 3.634910 GGATTATCTTAAGCCCCGCAAAA 59.365 43.478 0.00 0.00 0.00 2.44
5718 17543 4.098807 GGATTATCTTAAGCCCCGCAAAAA 59.901 41.667 0.00 0.00 0.00 1.94
5719 17544 5.221441 GGATTATCTTAAGCCCCGCAAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
5720 17545 3.525268 ATCTTAAGCCCCGCAAAAATG 57.475 42.857 0.00 0.00 0.00 2.32
5721 17546 2.243810 TCTTAAGCCCCGCAAAAATGT 58.756 42.857 0.00 0.00 0.00 2.71
5722 17547 2.630580 TCTTAAGCCCCGCAAAAATGTT 59.369 40.909 0.00 0.00 0.00 2.71
5723 17548 2.447244 TAAGCCCCGCAAAAATGTTG 57.553 45.000 0.00 0.00 0.00 3.33
5724 17549 0.467804 AAGCCCCGCAAAAATGTTGT 59.532 45.000 0.00 0.00 0.00 3.32
5725 17550 0.033366 AGCCCCGCAAAAATGTTGTC 59.967 50.000 0.00 0.00 0.00 3.18
5726 17551 0.948623 GCCCCGCAAAAATGTTGTCC 60.949 55.000 0.00 0.00 0.00 4.02
5727 17552 0.678950 CCCCGCAAAAATGTTGTCCT 59.321 50.000 0.00 0.00 0.00 3.85
5728 17553 1.069978 CCCCGCAAAAATGTTGTCCTT 59.930 47.619 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 3.910627 ACACTTATTTCAGGACTGAGGGT 59.089 43.478 1.92 0.00 41.13 4.34
114 115 4.223923 AGACACTTATTTCAGGACTGAGGG 59.776 45.833 1.92 0.00 41.13 4.30
119 120 7.881775 AACAAAAGACACTTATTTCAGGACT 57.118 32.000 0.00 0.00 0.00 3.85
140 141 6.181908 ACTCCCTACAAAGTTGTACAAAACA 58.818 36.000 10.51 0.00 42.35 2.83
314 323 6.949578 ATAAAATGAAAAACATGCACTCCG 57.050 33.333 0.00 0.00 39.39 4.63
369 378 6.770785 AGTGGCCAACGATACATTTATAATGT 59.229 34.615 7.24 9.69 36.13 2.71
478 492 7.761038 AGAAACTTTGATCTCCGGTATTTTT 57.239 32.000 0.00 0.00 0.00 1.94
479 493 7.230712 ACAAGAAACTTTGATCTCCGGTATTTT 59.769 33.333 0.00 0.00 0.00 1.82
480 494 6.715264 ACAAGAAACTTTGATCTCCGGTATTT 59.285 34.615 0.00 0.00 0.00 1.40
519 537 1.437397 TTAGGACTTGAACCCGGGTT 58.563 50.000 38.96 38.96 41.54 4.11
544 562 0.393808 AAAACACGACCACCTGTGCT 60.394 50.000 0.00 0.00 39.71 4.40
550 568 3.982576 AATCAGAAAAACACGACCACC 57.017 42.857 0.00 0.00 0.00 4.61
585 604 1.784525 GCCACATATGCCTCGTAGTC 58.215 55.000 1.58 0.00 0.00 2.59
617 636 9.579932 TCTAGAGATGAGCTGACATATCTTAAA 57.420 33.333 15.34 0.98 43.36 1.52
628 647 2.692557 GCACCTTCTAGAGATGAGCTGA 59.307 50.000 0.00 0.00 0.00 4.26
662 681 3.155470 GAATCCACGGATGCACGCG 62.155 63.158 3.53 3.53 37.37 6.01
669 688 3.517100 CTCATCCCTATGAATCCACGGAT 59.483 47.826 0.00 0.00 41.57 4.18
676 695 3.812053 GCACACACTCATCCCTATGAATC 59.188 47.826 0.00 0.00 41.57 2.52
677 696 3.742327 CGCACACACTCATCCCTATGAAT 60.742 47.826 0.00 0.00 41.57 2.57
687 706 1.224069 GCACTGACGCACACACTCAT 61.224 55.000 0.00 0.00 0.00 2.90
689 708 2.931386 GCACTGACGCACACACTC 59.069 61.111 0.00 0.00 0.00 3.51
698 717 2.086426 ACATACACGCGCACTGACG 61.086 57.895 5.73 0.00 0.00 4.35
700 719 0.108851 ATCACATACACGCGCACTGA 60.109 50.000 5.73 0.00 0.00 3.41
701 720 0.298707 GATCACATACACGCGCACTG 59.701 55.000 5.73 4.05 0.00 3.66
702 721 0.108851 TGATCACATACACGCGCACT 60.109 50.000 5.73 0.00 0.00 4.40
706 740 1.190984 GCAGATGATCACATACACGCG 59.809 52.381 3.53 3.53 36.82 6.01
801 849 8.909708 TGTACATGAATGAAAATTCGATTTCC 57.090 30.769 0.00 0.00 38.30 3.13
803 851 8.739039 TCCTGTACATGAATGAAAATTCGATTT 58.261 29.630 0.00 0.00 33.42 2.17
804 852 8.279970 TCCTGTACATGAATGAAAATTCGATT 57.720 30.769 0.00 0.00 33.42 3.34
905 955 3.881089 TGCACCTGATGATTCATTAGCTG 59.119 43.478 11.87 10.14 0.00 4.24
986 1037 2.884639 GTGGTTGTGCCTTGTACTGAAT 59.115 45.455 0.00 0.00 38.35 2.57
1003 1054 2.908940 GCTGCAGGTGCTTGTGGT 60.909 61.111 17.12 0.00 42.66 4.16
1022 1073 1.216941 GCCTTTGTGTGTGCATGCAC 61.217 55.000 38.00 38.00 46.33 4.57
1129 1181 0.099968 CATCTTCACGGCCATGCTTG 59.900 55.000 2.24 0.00 0.00 4.01
1320 1375 9.710900 CACACATATAATTAGAGTTGGAGCATA 57.289 33.333 0.00 0.00 0.00 3.14
1321 1376 8.213679 ACACACATATAATTAGAGTTGGAGCAT 58.786 33.333 0.00 0.00 0.00 3.79
1322 1377 7.495606 CACACACATATAATTAGAGTTGGAGCA 59.504 37.037 0.00 0.00 0.00 4.26
1323 1378 7.495934 ACACACACATATAATTAGAGTTGGAGC 59.504 37.037 0.00 0.00 0.00 4.70
1324 1379 8.820933 CACACACACATATAATTAGAGTTGGAG 58.179 37.037 0.00 0.00 0.00 3.86
1326 1381 8.390354 CACACACACACATATAATTAGAGTTGG 58.610 37.037 0.00 0.00 0.00 3.77
1367 1435 8.643324 AGTATGATCAAGGACTCAGGTTATTAC 58.357 37.037 0.00 0.00 0.00 1.89
1384 1452 7.141363 CGATGTCAAGTCATGTAGTATGATCA 58.859 38.462 0.00 0.00 0.00 2.92
1399 1521 1.227999 CCGTGCAACCGATGTCAAGT 61.228 55.000 0.00 0.00 0.00 3.16
1417 1543 5.416271 TCTTTTCGGGAGCATATATACCC 57.584 43.478 10.17 10.17 39.02 3.69
1440 1570 1.848652 TCGCTAGGCCTTAGTGACTT 58.151 50.000 12.58 0.00 42.48 3.01
1446 1576 3.533606 ATATGCATCGCTAGGCCTTAG 57.466 47.619 12.58 7.78 0.00 2.18
1450 1580 0.449388 GCAATATGCATCGCTAGGCC 59.551 55.000 0.19 0.00 44.26 5.19
1461 1614 4.755123 AGTAGTACATTTCGGGCAATATGC 59.245 41.667 2.52 0.00 44.08 3.14
1465 1618 4.080526 AGGAAGTAGTACATTTCGGGCAAT 60.081 41.667 2.52 0.00 0.00 3.56
1469 1622 3.490419 CGGAGGAAGTAGTACATTTCGGG 60.490 52.174 2.52 0.00 0.00 5.14
1470 1623 3.129988 ACGGAGGAAGTAGTACATTTCGG 59.870 47.826 2.52 2.46 0.00 4.30
1489 1642 1.914257 GCGTTTTTGACACTCGAACGG 60.914 52.381 8.68 0.00 42.21 4.44
1490 1643 1.005347 AGCGTTTTTGACACTCGAACG 60.005 47.619 0.00 0.00 44.08 3.95
1506 1659 9.910511 CGTGTCTGTTTTATAATATAAAAGCGT 57.089 29.630 16.02 0.00 0.00 5.07
1507 1660 9.910511 ACGTGTCTGTTTTATAATATAAAAGCG 57.089 29.630 16.02 14.63 0.00 4.68
1522 1675 9.820229 CATTTAATTGTGTATACGTGTCTGTTT 57.180 29.630 0.00 0.00 0.00 2.83
1523 1676 8.995220 ACATTTAATTGTGTATACGTGTCTGTT 58.005 29.630 0.00 0.00 0.00 3.16
1524 1677 8.542497 ACATTTAATTGTGTATACGTGTCTGT 57.458 30.769 0.00 0.00 0.00 3.41
1525 1678 9.895894 GTACATTTAATTGTGTATACGTGTCTG 57.104 33.333 12.20 0.00 33.78 3.51
1526 1679 9.642327 TGTACATTTAATTGTGTATACGTGTCT 57.358 29.630 12.20 0.00 33.78 3.41
1535 1688 9.884636 ACTCTGCTATGTACATTTAATTGTGTA 57.115 29.630 14.77 3.24 0.00 2.90
1536 1689 8.792830 ACTCTGCTATGTACATTTAATTGTGT 57.207 30.769 14.77 4.80 0.00 3.72
1537 1690 8.882736 TGACTCTGCTATGTACATTTAATTGTG 58.117 33.333 14.77 4.24 0.00 3.33
1538 1691 9.618890 ATGACTCTGCTATGTACATTTAATTGT 57.381 29.630 14.77 7.22 0.00 2.71
1539 1692 9.874215 CATGACTCTGCTATGTACATTTAATTG 57.126 33.333 14.77 4.11 0.00 2.32
1540 1693 8.562892 GCATGACTCTGCTATGTACATTTAATT 58.437 33.333 14.77 0.00 39.12 1.40
1541 1694 7.173907 GGCATGACTCTGCTATGTACATTTAAT 59.826 37.037 14.77 0.00 41.95 1.40
1542 1695 6.483307 GGCATGACTCTGCTATGTACATTTAA 59.517 38.462 14.77 0.00 41.95 1.52
1543 1696 5.991606 GGCATGACTCTGCTATGTACATTTA 59.008 40.000 14.77 0.00 41.95 1.40
1544 1697 4.818546 GGCATGACTCTGCTATGTACATTT 59.181 41.667 14.77 0.00 41.95 2.32
1545 1698 4.384056 GGCATGACTCTGCTATGTACATT 58.616 43.478 14.77 0.00 41.95 2.71
1546 1699 3.553715 CGGCATGACTCTGCTATGTACAT 60.554 47.826 13.93 13.93 41.95 2.29
1547 1700 2.223805 CGGCATGACTCTGCTATGTACA 60.224 50.000 0.00 0.00 41.95 2.90
1548 1701 2.223829 ACGGCATGACTCTGCTATGTAC 60.224 50.000 0.00 0.00 41.95 2.90
1549 1702 2.031870 ACGGCATGACTCTGCTATGTA 58.968 47.619 0.00 0.00 41.95 2.29
1550 1703 0.826715 ACGGCATGACTCTGCTATGT 59.173 50.000 0.00 0.00 41.95 2.29
1551 1704 1.945387 AACGGCATGACTCTGCTATG 58.055 50.000 0.00 0.00 41.95 2.23
1552 1705 2.698855 AAACGGCATGACTCTGCTAT 57.301 45.000 0.00 0.00 41.95 2.97
1553 1706 2.472695 AAAACGGCATGACTCTGCTA 57.527 45.000 0.00 0.00 41.95 3.49
1554 1707 1.267806 CAAAAACGGCATGACTCTGCT 59.732 47.619 0.00 0.00 41.95 4.24
1555 1708 1.666888 CCAAAAACGGCATGACTCTGC 60.667 52.381 0.00 0.00 41.53 4.26
1556 1709 1.608590 ACCAAAAACGGCATGACTCTG 59.391 47.619 0.00 0.00 0.00 3.35
1557 1710 1.880027 GACCAAAAACGGCATGACTCT 59.120 47.619 0.00 0.00 0.00 3.24
1558 1711 1.606668 TGACCAAAAACGGCATGACTC 59.393 47.619 0.00 0.00 0.00 3.36
1559 1712 1.608590 CTGACCAAAAACGGCATGACT 59.391 47.619 0.00 0.00 0.00 3.41
1560 1713 1.606668 TCTGACCAAAAACGGCATGAC 59.393 47.619 0.00 0.00 0.00 3.06
1561 1714 1.974265 TCTGACCAAAAACGGCATGA 58.026 45.000 0.00 0.00 0.00 3.07
1562 1715 2.791383 TTCTGACCAAAAACGGCATG 57.209 45.000 0.00 0.00 0.00 4.06
1563 1716 3.810310 TTTTCTGACCAAAAACGGCAT 57.190 38.095 0.00 0.00 0.00 4.40
1564 1717 3.254892 GTTTTTCTGACCAAAAACGGCA 58.745 40.909 5.94 0.00 43.04 5.69
1565 1718 3.918258 GTTTTTCTGACCAAAAACGGC 57.082 42.857 5.94 0.00 43.04 5.68
1569 1722 6.586844 CGGTACTTTGTTTTTCTGACCAAAAA 59.413 34.615 0.00 0.00 33.72 1.94
1570 1723 6.094061 CGGTACTTTGTTTTTCTGACCAAAA 58.906 36.000 0.00 0.00 0.00 2.44
1571 1724 5.642686 CGGTACTTTGTTTTTCTGACCAAA 58.357 37.500 0.00 0.00 0.00 3.28
1572 1725 4.439016 GCGGTACTTTGTTTTTCTGACCAA 60.439 41.667 0.00 0.00 0.00 3.67
1573 1726 3.065648 GCGGTACTTTGTTTTTCTGACCA 59.934 43.478 0.00 0.00 0.00 4.02
1574 1727 3.065648 TGCGGTACTTTGTTTTTCTGACC 59.934 43.478 0.00 0.00 0.00 4.02
1575 1728 4.281525 TGCGGTACTTTGTTTTTCTGAC 57.718 40.909 0.00 0.00 0.00 3.51
1576 1729 5.180492 CCTATGCGGTACTTTGTTTTTCTGA 59.820 40.000 0.00 0.00 0.00 3.27
1577 1730 5.390613 CCTATGCGGTACTTTGTTTTTCTG 58.609 41.667 0.00 0.00 0.00 3.02
1578 1731 4.082949 GCCTATGCGGTACTTTGTTTTTCT 60.083 41.667 0.00 0.00 34.25 2.52
1579 1732 4.163552 GCCTATGCGGTACTTTGTTTTTC 58.836 43.478 0.00 0.00 34.25 2.29
1580 1733 3.570550 TGCCTATGCGGTACTTTGTTTTT 59.429 39.130 0.00 0.00 41.78 1.94
1581 1734 3.150767 TGCCTATGCGGTACTTTGTTTT 58.849 40.909 0.00 0.00 41.78 2.43
1582 1735 2.785562 TGCCTATGCGGTACTTTGTTT 58.214 42.857 0.00 0.00 41.78 2.83
1583 1736 2.483014 TGCCTATGCGGTACTTTGTT 57.517 45.000 0.00 0.00 41.78 2.83
1584 1737 2.710096 ATGCCTATGCGGTACTTTGT 57.290 45.000 0.00 0.00 41.78 2.83
1585 1738 3.494626 CAGTATGCCTATGCGGTACTTTG 59.505 47.826 5.52 0.00 38.62 2.77
1586 1739 3.386726 TCAGTATGCCTATGCGGTACTTT 59.613 43.478 5.52 0.00 38.62 2.66
1587 1740 2.963101 TCAGTATGCCTATGCGGTACTT 59.037 45.455 5.52 0.00 38.62 2.24
1588 1741 2.594131 TCAGTATGCCTATGCGGTACT 58.406 47.619 0.00 3.22 40.21 2.73
1589 1742 3.594603 ATCAGTATGCCTATGCGGTAC 57.405 47.619 0.00 0.00 41.78 3.34
1590 1743 4.341487 ACTATCAGTATGCCTATGCGGTA 58.659 43.478 0.00 0.00 41.78 4.02
1591 1744 3.165875 ACTATCAGTATGCCTATGCGGT 58.834 45.455 0.00 0.00 41.78 5.68
1634 1793 6.183360 TGGTTTCTCACTTTTTCCATTTACCC 60.183 38.462 0.00 0.00 0.00 3.69
1635 1794 6.811954 TGGTTTCTCACTTTTTCCATTTACC 58.188 36.000 0.00 0.00 0.00 2.85
1636 1795 7.712797 TCTGGTTTCTCACTTTTTCCATTTAC 58.287 34.615 0.00 0.00 0.00 2.01
1637 1796 7.889873 TCTGGTTTCTCACTTTTTCCATTTA 57.110 32.000 0.00 0.00 0.00 1.40
1638 1797 6.790232 TCTGGTTTCTCACTTTTTCCATTT 57.210 33.333 0.00 0.00 0.00 2.32
1640 1799 6.983906 AATCTGGTTTCTCACTTTTTCCAT 57.016 33.333 0.00 0.00 0.00 3.41
1641 1800 6.790232 AAATCTGGTTTCTCACTTTTTCCA 57.210 33.333 0.00 0.00 0.00 3.53
1642 1801 7.648112 GTGTAAATCTGGTTTCTCACTTTTTCC 59.352 37.037 11.65 0.00 34.69 3.13
1695 1854 4.933400 TCTACCTCGGCAAGAAAAACATAC 59.067 41.667 0.00 0.00 0.00 2.39
1699 1858 5.410439 TGTTATCTACCTCGGCAAGAAAAAC 59.590 40.000 0.00 8.79 0.00 2.43
1705 1864 4.592485 ATCTGTTATCTACCTCGGCAAG 57.408 45.455 0.00 0.00 0.00 4.01
1706 1865 6.266786 TCATAATCTGTTATCTACCTCGGCAA 59.733 38.462 0.00 0.00 0.00 4.52
1708 1867 6.268825 TCATAATCTGTTATCTACCTCGGC 57.731 41.667 0.00 0.00 0.00 5.54
1722 1968 7.674120 TCTGATGACCACCTAATCATAATCTG 58.326 38.462 0.00 0.00 35.67 2.90
1728 1974 8.125081 TCCTATATCTGATGACCACCTAATCAT 58.875 37.037 0.00 0.00 38.28 2.45
1737 1983 8.547481 TGTTAGTTTCCTATATCTGATGACCA 57.453 34.615 0.00 0.00 0.00 4.02
1741 1994 8.363390 TGCTCTGTTAGTTTCCTATATCTGATG 58.637 37.037 0.00 0.00 0.00 3.07
1742 1995 8.484214 TGCTCTGTTAGTTTCCTATATCTGAT 57.516 34.615 0.00 0.00 0.00 2.90
1743 1996 7.780271 TCTGCTCTGTTAGTTTCCTATATCTGA 59.220 37.037 0.00 0.00 0.00 3.27
1746 1999 8.172352 TCTCTGCTCTGTTAGTTTCCTATATC 57.828 38.462 0.00 0.00 0.00 1.63
1747 2000 8.001875 TCTCTCTGCTCTGTTAGTTTCCTATAT 58.998 37.037 0.00 0.00 0.00 0.86
1751 2004 4.411927 TCTCTCTGCTCTGTTAGTTTCCT 58.588 43.478 0.00 0.00 0.00 3.36
1752 2005 4.792521 TCTCTCTGCTCTGTTAGTTTCC 57.207 45.455 0.00 0.00 0.00 3.13
1753 2006 7.491048 CCTTAATCTCTCTGCTCTGTTAGTTTC 59.509 40.741 0.00 0.00 0.00 2.78
1754 2007 7.327214 CCTTAATCTCTCTGCTCTGTTAGTTT 58.673 38.462 0.00 0.00 0.00 2.66
1755 2008 6.127196 CCCTTAATCTCTCTGCTCTGTTAGTT 60.127 42.308 0.00 0.00 0.00 2.24
1756 2009 5.362430 CCCTTAATCTCTCTGCTCTGTTAGT 59.638 44.000 0.00 0.00 0.00 2.24
1757 2010 5.362430 ACCCTTAATCTCTCTGCTCTGTTAG 59.638 44.000 0.00 0.00 0.00 2.34
1758 2011 5.273208 ACCCTTAATCTCTCTGCTCTGTTA 58.727 41.667 0.00 0.00 0.00 2.41
1759 2012 4.100373 ACCCTTAATCTCTCTGCTCTGTT 58.900 43.478 0.00 0.00 0.00 3.16
1760 2013 3.718723 ACCCTTAATCTCTCTGCTCTGT 58.281 45.455 0.00 0.00 0.00 3.41
1781 2034 8.593945 ATTGAGAATTTTAGCAGGAACCATAA 57.406 30.769 0.00 0.00 0.00 1.90
1784 2037 6.248433 AGATTGAGAATTTTAGCAGGAACCA 58.752 36.000 0.00 0.00 0.00 3.67
1806 2059 3.507233 GCCAAACAATCACAGATCCAAGA 59.493 43.478 0.00 0.00 0.00 3.02
1833 2107 8.548877 AGCCATCCATAATAATTACGGTAGAAT 58.451 33.333 0.00 0.00 0.00 2.40
1836 2110 9.314321 CTTAGCCATCCATAATAATTACGGTAG 57.686 37.037 0.00 0.00 0.00 3.18
1853 2127 4.581824 TCCAATCAAGCAATCTTAGCCATC 59.418 41.667 0.00 0.00 0.00 3.51
1931 4904 6.204882 TCGTGGATATCGTCATGGCTATATAG 59.795 42.308 4.46 5.30 0.00 1.31
1932 4905 6.059484 TCGTGGATATCGTCATGGCTATATA 58.941 40.000 4.46 0.00 0.00 0.86
1941 4932 5.306394 TCTTCTACTCGTGGATATCGTCAT 58.694 41.667 0.00 0.00 0.00 3.06
1948 4939 3.252701 GGCGAATCTTCTACTCGTGGATA 59.747 47.826 0.00 0.00 35.06 2.59
1981 4972 3.972133 TGATTTGGAGATTGCTCACCAT 58.028 40.909 0.00 0.00 41.12 3.55
2005 4996 1.962807 CCAGCATCCTCTCTACTCTGG 59.037 57.143 0.00 0.00 34.44 3.86
2015 5014 1.534595 GAATTGATCGCCAGCATCCTC 59.465 52.381 0.00 0.00 0.00 3.71
2016 5015 1.134007 TGAATTGATCGCCAGCATCCT 60.134 47.619 0.00 0.00 0.00 3.24
2017 5016 1.266175 CTGAATTGATCGCCAGCATCC 59.734 52.381 0.00 0.00 0.00 3.51
2022 5021 2.028420 TGGTCTGAATTGATCGCCAG 57.972 50.000 0.00 0.00 0.00 4.85
2102 5109 2.034432 TGTTAGCCAACATGCAACAGTG 59.966 45.455 0.00 0.00 39.75 3.66
2167 5178 0.035725 TGTCATCCAAGGCAGCAGAG 60.036 55.000 0.00 0.00 0.00 3.35
2177 5188 4.759183 TGATGTCAAACGAATGTCATCCAA 59.241 37.500 19.95 8.17 41.87 3.53
2180 5191 5.082059 GTGTGATGTCAAACGAATGTCATC 58.918 41.667 17.78 17.78 42.45 2.92
2239 5278 9.474313 GATGACTCATCCTTATTCTAGGTCTAT 57.526 37.037 7.71 0.00 35.07 1.98
2253 5292 4.105754 TCCACGATAGATGACTCATCCT 57.894 45.455 14.41 3.79 41.36 3.24
2255 5294 4.520874 TCCTTCCACGATAGATGACTCATC 59.479 45.833 10.65 10.65 40.80 2.92
2257 5296 3.898482 TCCTTCCACGATAGATGACTCA 58.102 45.455 0.00 0.00 41.38 3.41
2265 5304 2.598565 TCCAGGATCCTTCCACGATAG 58.401 52.381 13.00 0.00 45.30 2.08
2286 5325 9.204570 GTAGTCTAGCATCTCAAAAAGTTTGTA 57.795 33.333 0.98 0.00 0.00 2.41
2290 5329 5.869888 CGGTAGTCTAGCATCTCAAAAAGTT 59.130 40.000 9.63 0.00 0.00 2.66
2291 5330 5.185249 TCGGTAGTCTAGCATCTCAAAAAGT 59.815 40.000 9.63 0.00 0.00 2.66
2408 5538 5.596268 GCTTGGAAGCCAAAAACAATTAG 57.404 39.130 0.00 0.00 43.44 1.73
2424 5554 3.439857 AAAGGCTACATGAAGCTTGGA 57.560 42.857 2.10 0.00 42.37 3.53
2494 5624 2.800544 GCGCATCGACATATAAGGTGTT 59.199 45.455 0.30 0.00 0.00 3.32
2495 5625 2.223947 TGCGCATCGACATATAAGGTGT 60.224 45.455 5.66 0.00 0.00 4.16
2498 5628 4.668576 ATTTGCGCATCGACATATAAGG 57.331 40.909 12.75 0.00 0.00 2.69
2513 5644 5.897133 GCTCATGCAATAATTGTATTTGCG 58.103 37.500 0.00 0.00 39.41 4.85
2546 5695 2.911102 GCAGCTCGCAAATAAAACTGTC 59.089 45.455 3.64 0.00 41.79 3.51
2562 5711 3.382546 ACATTTTGTTTCTCTGTGCAGCT 59.617 39.130 0.00 0.00 0.00 4.24
2598 5749 5.717119 ACCAACAGAGTAGTACCATTAACG 58.283 41.667 0.00 0.00 0.00 3.18
2797 8996 2.513753 TGCCAAATGTGTTACCCTCTG 58.486 47.619 0.00 0.00 0.00 3.35
2827 9029 7.068226 GGGTTGTTAATATCATGTGCTAACCTT 59.932 37.037 0.00 0.00 35.42 3.50
2831 9033 5.830991 GGGGGTTGTTAATATCATGTGCTAA 59.169 40.000 0.00 0.00 0.00 3.09
2834 9036 3.957497 TGGGGGTTGTTAATATCATGTGC 59.043 43.478 0.00 0.00 0.00 4.57
2851 9053 5.937975 ATCATGTTTATTTTGAGTGGGGG 57.062 39.130 0.00 0.00 0.00 5.40
2896 9294 0.608640 AGCCACCGAGTTAACCTCTG 59.391 55.000 0.88 0.00 38.11 3.35
3040 9463 9.978044 CTAGGAGTATTACCAGTATTTGTTACC 57.022 37.037 0.00 0.00 0.00 2.85
3129 9993 6.183359 GCAAACCATTTACAAGCAATTCTACG 60.183 38.462 0.00 0.00 0.00 3.51
3130 9994 6.644592 TGCAAACCATTTACAAGCAATTCTAC 59.355 34.615 0.00 0.00 0.00 2.59
3149 10013 2.985809 TGCGCAAATTAGACATGCAAAC 59.014 40.909 8.16 0.00 40.04 2.93
3460 10324 2.742372 GCCGAGGAACACGCACAT 60.742 61.111 0.00 0.00 42.01 3.21
3513 10377 0.809241 CGAGCTCCTTGAGGATGCAC 60.809 60.000 8.47 12.85 44.46 4.57
3666 10530 0.545171 ACGAGAGGATGTAGACCGGA 59.455 55.000 9.46 0.00 0.00 5.14
4152 11016 1.015109 GTACGATGAGCTCCACGAGA 58.985 55.000 27.51 16.15 0.00 4.04
4170 11034 0.976641 TCTCCTTGCCGATGTTGAGT 59.023 50.000 0.00 0.00 0.00 3.41
4202 11066 1.652124 CGTCCGTGTGTATGCAAGTAC 59.348 52.381 0.00 0.00 0.00 2.73
4209 11073 4.150980 ACATTTACAACGTCCGTGTGTATG 59.849 41.667 1.62 7.32 0.00 2.39
4241 11116 3.425359 CGTGAGTCCTCGTACGTAACAAT 60.425 47.826 16.05 0.00 0.00 2.71
4254 11136 1.610673 ACATGAGCCCGTGAGTCCT 60.611 57.895 0.00 0.00 33.58 3.85
4411 11293 2.815647 CGTCGCCTCCTTTGAGCC 60.816 66.667 0.00 0.00 37.29 4.70
4457 11343 3.570550 GGAGTATGAGTCTATGACCGCTT 59.429 47.826 0.00 0.00 32.18 4.68
4459 11345 2.885266 TGGAGTATGAGTCTATGACCGC 59.115 50.000 0.00 0.00 32.18 5.68
4460 11346 5.941058 AGTATGGAGTATGAGTCTATGACCG 59.059 44.000 0.00 0.00 32.18 4.79
4461 11347 7.768807 AAGTATGGAGTATGAGTCTATGACC 57.231 40.000 0.00 0.00 32.18 4.02
4496 11382 2.232750 GTGCATATCAGCAGCGAGG 58.767 57.895 0.00 0.00 46.69 4.63
4505 11392 5.213891 ACGATTCACATAGGTGCATATCA 57.786 39.130 1.79 0.00 44.87 2.15
4506 11393 6.365839 CAAACGATTCACATAGGTGCATATC 58.634 40.000 1.79 5.08 44.87 1.63
4595 11489 6.118852 AGAAGAAGAAGAAAACAGAGCAACT 58.881 36.000 0.00 0.00 0.00 3.16
4597 11491 6.825721 AGAAGAAGAAGAAGAAAACAGAGCAA 59.174 34.615 0.00 0.00 0.00 3.91
4616 11510 6.114187 TGATAGCCACAAGAAGAAGAAGAA 57.886 37.500 0.00 0.00 0.00 2.52
4618 11512 4.332268 GCTGATAGCCACAAGAAGAAGAAG 59.668 45.833 0.00 0.00 34.48 2.85
4619 11513 4.019860 AGCTGATAGCCACAAGAAGAAGAA 60.020 41.667 0.00 0.00 43.77 2.52
4620 11514 3.517100 AGCTGATAGCCACAAGAAGAAGA 59.483 43.478 0.00 0.00 43.77 2.87
4621 11515 3.871485 AGCTGATAGCCACAAGAAGAAG 58.129 45.455 0.00 0.00 43.77 2.85
4622 11516 3.988976 AGCTGATAGCCACAAGAAGAA 57.011 42.857 0.00 0.00 43.77 2.52
4623 11517 4.039730 GGATAGCTGATAGCCACAAGAAGA 59.960 45.833 1.78 0.00 43.77 2.87
4624 11518 4.314121 GGATAGCTGATAGCCACAAGAAG 58.686 47.826 1.78 0.00 43.77 2.85
4625 11519 3.071602 GGGATAGCTGATAGCCACAAGAA 59.928 47.826 9.64 0.00 43.77 2.52
4626 11520 2.634940 GGGATAGCTGATAGCCACAAGA 59.365 50.000 9.64 0.00 43.77 3.02
4627 11521 2.636893 AGGGATAGCTGATAGCCACAAG 59.363 50.000 9.64 0.00 43.77 3.16
4641 11535 1.294780 GGCCATCGCTCAGGGATAG 59.705 63.158 3.46 0.00 33.49 2.08
4738 11632 5.815581 TGTAACAAGAGCAAAGGGTGATAT 58.184 37.500 0.00 0.00 0.00 1.63
4759 11653 3.081804 GCCACTAGCCTTGTGTTATTGT 58.918 45.455 5.60 0.00 33.92 2.71
4765 11659 0.474184 ACTTGCCACTAGCCTTGTGT 59.526 50.000 5.60 0.00 42.71 3.72
4768 11662 1.267806 CACAACTTGCCACTAGCCTTG 59.732 52.381 0.00 0.00 42.71 3.61
4794 11693 5.460646 AGCTGGTAATTCGTTTGTTCATTG 58.539 37.500 0.00 0.00 0.00 2.82
4797 11696 4.385825 AGAGCTGGTAATTCGTTTGTTCA 58.614 39.130 0.00 0.00 0.00 3.18
4815 11714 3.199880 TGAAGCCTATTAGCCAAGAGC 57.800 47.619 0.00 0.00 44.25 4.09
4869 12584 7.643123 ACATCTCCTTAAGGAAACCATATTGT 58.357 34.615 24.31 9.39 44.91 2.71
4915 12632 1.808945 CGATGCAAGAACTCAAAGGCT 59.191 47.619 0.00 0.00 0.00 4.58
4925 12642 1.872952 CTTGTGACACCGATGCAAGAA 59.127 47.619 2.45 0.00 38.90 2.52
4934 12651 2.128035 GTCTCTTGACTTGTGACACCG 58.872 52.381 2.45 0.00 39.94 4.94
4960 12677 5.230306 TCGCAAAATCAAGTTTTAAACCACG 59.770 36.000 4.01 0.00 37.93 4.94
4961 12678 6.576551 TCGCAAAATCAAGTTTTAAACCAC 57.423 33.333 4.01 0.00 37.93 4.16
5024 15575 5.413309 TTCAAAACCTTTTGCCTTGAGAA 57.587 34.783 5.74 0.00 45.35 2.87
5027 15578 6.765512 CCTATTTTCAAAACCTTTTGCCTTGA 59.234 34.615 5.74 0.00 45.35 3.02
5045 15596 9.566432 GAATCCAGTCATCAATCTACCTATTTT 57.434 33.333 0.00 0.00 0.00 1.82
5054 15605 4.142790 GGCATGAATCCAGTCATCAATCT 58.857 43.478 0.00 0.00 36.04 2.40
5058 15609 3.137728 AGATGGCATGAATCCAGTCATCA 59.862 43.478 3.81 0.00 36.04 3.07
5059 15610 3.752665 AGATGGCATGAATCCAGTCATC 58.247 45.455 3.81 8.08 36.04 2.92
5060 15611 3.878237 AGATGGCATGAATCCAGTCAT 57.122 42.857 3.81 0.00 38.84 3.06
5085 15636 1.197430 AGGGAACAGAGGAGCCAGTG 61.197 60.000 0.00 0.00 0.00 3.66
5086 15637 0.474660 AAGGGAACAGAGGAGCCAGT 60.475 55.000 0.00 0.00 0.00 4.00
5087 15638 1.573108 TAAGGGAACAGAGGAGCCAG 58.427 55.000 0.00 0.00 0.00 4.85
5102 15655 4.873724 TTCCTAGGAACCCCATTTAAGG 57.126 45.455 20.72 0.00 33.88 2.69
5106 15659 5.023514 ACATTTTCCTAGGAACCCCATTT 57.976 39.130 24.21 4.63 33.41 2.32
5107 15660 4.692523 ACATTTTCCTAGGAACCCCATT 57.307 40.909 24.21 3.26 33.41 3.16
5126 15679 2.781681 GCCTGAGGCCTAGTAAAACA 57.218 50.000 13.77 0.00 44.06 2.83
5158 16005 5.382618 AGATTCATTGCTCTGTCCAAAAC 57.617 39.130 0.00 0.00 0.00 2.43
5164 16011 2.751259 TGCCAAGATTCATTGCTCTGTC 59.249 45.455 0.00 0.00 0.00 3.51
5212 16059 3.583086 ACTATAGGAAACACAGTGTGGCT 59.417 43.478 26.40 13.20 37.94 4.75
5221 16068 9.765795 ATCTGCATACTAAACTATAGGAAACAC 57.234 33.333 4.43 0.00 0.00 3.32
5223 16070 8.713271 GCATCTGCATACTAAACTATAGGAAAC 58.287 37.037 4.43 0.00 41.59 2.78
5280 16127 8.992073 GCCTTCAAGTAAATCAAATTCAAATGT 58.008 29.630 0.00 0.00 0.00 2.71
5282 16129 8.992073 GTGCCTTCAAGTAAATCAAATTCAAAT 58.008 29.630 0.00 0.00 0.00 2.32
5284 16131 7.652909 CAGTGCCTTCAAGTAAATCAAATTCAA 59.347 33.333 0.00 0.00 0.00 2.69
5286 16133 6.587608 CCAGTGCCTTCAAGTAAATCAAATTC 59.412 38.462 0.00 0.00 0.00 2.17
5287 16134 6.041979 ACCAGTGCCTTCAAGTAAATCAAATT 59.958 34.615 0.00 0.00 0.00 1.82
5314 16161 1.243902 GGTGGAATCAGAAAACGCCA 58.756 50.000 0.00 0.00 0.00 5.69
5318 16165 1.463444 CGACCGGTGGAATCAGAAAAC 59.537 52.381 14.63 0.00 0.00 2.43
5362 16209 7.070322 CCTCCTCAATGTTAATGGGAATCAAAT 59.930 37.037 0.00 0.00 0.00 2.32
5399 16246 9.853555 CTGCAACTCATTGTATTGGTAAATAAA 57.146 29.630 0.00 0.00 38.17 1.40
5414 16261 0.407139 AGCCCCTTCTGCAACTCATT 59.593 50.000 0.00 0.00 0.00 2.57
5454 16301 5.422650 GTCCAAGAGGTAGACCAAGATAAGT 59.577 44.000 0.66 0.00 38.89 2.24
5477 16326 1.207791 CCACTCTGGGCTTGGATAGT 58.792 55.000 0.00 0.00 32.67 2.12
5481 16330 2.596851 GCTCCACTCTGGGCTTGGA 61.597 63.158 0.00 0.00 38.32 3.53
5518 16367 4.717877 TGCCAATCTTCTTTCAGTTCTGA 58.282 39.130 0.00 0.00 0.00 3.27
5524 16373 6.376581 AGAAATACCTGCCAATCTTCTTTCAG 59.623 38.462 0.00 0.00 0.00 3.02
5568 16417 8.650143 TGATAGTAAATTTGCTTCCTTTCCTT 57.350 30.769 14.22 0.00 0.00 3.36
5569 16418 7.340487 CCTGATAGTAAATTTGCTTCCTTTCCT 59.660 37.037 14.22 0.00 0.00 3.36
5570 16419 7.339466 TCCTGATAGTAAATTTGCTTCCTTTCC 59.661 37.037 14.22 0.00 0.00 3.13
5571 16420 8.281212 TCCTGATAGTAAATTTGCTTCCTTTC 57.719 34.615 14.22 5.35 0.00 2.62
5573 16422 7.890655 AGTTCCTGATAGTAAATTTGCTTCCTT 59.109 33.333 14.22 0.00 0.00 3.36
5574 16423 7.406104 AGTTCCTGATAGTAAATTTGCTTCCT 58.594 34.615 14.22 0.24 0.00 3.36
5600 17425 9.965902 CCTTATATTCTATAGCCCAACAAAGAT 57.034 33.333 0.00 0.00 0.00 2.40
5622 17447 7.855784 TGATACAGAGAGGCATATTTCCTTA 57.144 36.000 0.00 0.00 33.24 2.69
5694 17519 1.771854 TGCGGGGCTTAAGATAATCCA 59.228 47.619 6.67 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.