Multiple sequence alignment - TraesCS1A01G237700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G237700 chr1A 100.000 2934 0 0 1 2934 423595140 423592207 0.000000e+00 5419
1 TraesCS1A01G237700 chr1A 93.382 2614 145 18 344 2930 423551733 423549121 0.000000e+00 3843
2 TraesCS1A01G237700 chr1A 93.075 2585 169 9 358 2934 424080051 424082633 0.000000e+00 3773
3 TraesCS1A01G237700 chr1A 93.083 2559 166 9 368 2918 423164561 423162006 0.000000e+00 3735
4 TraesCS1A01G237700 chr1A 93.020 2550 168 9 377 2918 423290064 423287517 0.000000e+00 3714
5 TraesCS1A01G237700 chr1A 92.519 2580 184 8 364 2934 424272411 424274990 0.000000e+00 3687
6 TraesCS1A01G237700 chr1A 92.332 2569 173 16 368 2918 423228180 423225618 0.000000e+00 3631
7 TraesCS1A01G237700 chr1A 94.640 2239 116 3 700 2934 423515655 423513417 0.000000e+00 3467
8 TraesCS1A01G237700 chr1A 94.149 2239 125 5 700 2934 423462692 423460456 0.000000e+00 3404
9 TraesCS1A01G237700 chr1A 92.882 2051 135 9 866 2908 424392568 424394615 0.000000e+00 2968
10 TraesCS1A01G237700 chr1A 92.060 529 41 1 346 874 424391068 424391595 0.000000e+00 743
11 TraesCS1A01G237700 chr1A 92.430 502 36 2 358 857 423144101 423143600 0.000000e+00 715
12 TraesCS1A01G237700 chr1A 91.489 517 39 5 346 857 423269805 423269289 0.000000e+00 706
13 TraesCS1A01G237700 chr1A 91.279 516 41 4 346 857 423207927 423207412 0.000000e+00 701
14 TraesCS1A01G237700 chr3A 93.023 344 22 2 2 344 290578785 290578443 4.370000e-138 501
15 TraesCS1A01G237700 chr3A 93.175 337 21 2 2 338 622764069 622764403 7.300000e-136 494
16 TraesCS1A01G237700 chr3A 92.442 344 26 0 2 345 140777541 140777884 2.630000e-135 492
17 TraesCS1A01G237700 chr5A 92.733 344 25 0 2 345 593965348 593965005 5.650000e-137 497
18 TraesCS1A01G237700 chr5A 92.442 344 24 2 2 345 178196995 178196654 9.450000e-135 490
19 TraesCS1A01G237700 chr2A 92.486 346 24 2 2 345 671221032 671221377 7.300000e-136 494
20 TraesCS1A01G237700 chr3B 92.442 344 26 0 2 345 256766981 256766638 2.630000e-135 492
21 TraesCS1A01G237700 chr4B 92.464 345 23 3 2 345 430425017 430425359 9.450000e-135 490
22 TraesCS1A01G237700 chr3D 91.954 348 28 0 2 349 466076000 466076347 3.400000e-134 488


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G237700 chr1A 423592207 423595140 2933 True 5419.0 5419 100.000 1 2934 1 chr1A.!!$R10 2933
1 TraesCS1A01G237700 chr1A 423549121 423551733 2612 True 3843.0 3843 93.382 344 2930 1 chr1A.!!$R9 2586
2 TraesCS1A01G237700 chr1A 424080051 424082633 2582 False 3773.0 3773 93.075 358 2934 1 chr1A.!!$F1 2576
3 TraesCS1A01G237700 chr1A 423162006 423164561 2555 True 3735.0 3735 93.083 368 2918 1 chr1A.!!$R2 2550
4 TraesCS1A01G237700 chr1A 423287517 423290064 2547 True 3714.0 3714 93.020 377 2918 1 chr1A.!!$R6 2541
5 TraesCS1A01G237700 chr1A 424272411 424274990 2579 False 3687.0 3687 92.519 364 2934 1 chr1A.!!$F2 2570
6 TraesCS1A01G237700 chr1A 423225618 423228180 2562 True 3631.0 3631 92.332 368 2918 1 chr1A.!!$R4 2550
7 TraesCS1A01G237700 chr1A 423513417 423515655 2238 True 3467.0 3467 94.640 700 2934 1 chr1A.!!$R8 2234
8 TraesCS1A01G237700 chr1A 423460456 423462692 2236 True 3404.0 3404 94.149 700 2934 1 chr1A.!!$R7 2234
9 TraesCS1A01G237700 chr1A 424391068 424394615 3547 False 1855.5 2968 92.471 346 2908 2 chr1A.!!$F3 2562
10 TraesCS1A01G237700 chr1A 423143600 423144101 501 True 715.0 715 92.430 358 857 1 chr1A.!!$R1 499
11 TraesCS1A01G237700 chr1A 423269289 423269805 516 True 706.0 706 91.489 346 857 1 chr1A.!!$R5 511
12 TraesCS1A01G237700 chr1A 423207412 423207927 515 True 701.0 701 91.279 346 857 1 chr1A.!!$R3 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.038166 TCCTGTGGGAAATGGAGTGC 59.962 55.0 0.0 0.0 38.93 4.40 F
290 291 0.107017 CAGTAATCCTGGGGCTGGTG 60.107 60.0 0.0 0.0 37.54 4.17 F
292 293 0.181350 GTAATCCTGGGGCTGGTGAG 59.819 60.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 2580 2.298446 TGGAAACCATACGTACCACGAA 59.702 45.455 5.61 0.0 46.05 3.85 R
1823 2841 3.987547 ACCATCTCTGTTGCAGATATCG 58.012 45.455 0.00 0.0 39.92 2.92 R
2324 3347 7.512992 AGAATAGTGAATCTATTTGGTCCCAG 58.487 38.462 2.38 0.0 45.86 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.897140 TCTTGGCCAAATTTCTTTCATGG 58.103 39.130 20.91 2.76 0.00 3.66
24 25 4.592351 TCTTGGCCAAATTTCTTTCATGGA 59.408 37.500 20.91 5.35 32.82 3.41
25 26 4.540359 TGGCCAAATTTCTTTCATGGAG 57.460 40.909 0.61 0.00 32.82 3.86
26 27 4.158786 TGGCCAAATTTCTTTCATGGAGA 58.841 39.130 0.61 0.00 32.82 3.71
27 28 4.221262 TGGCCAAATTTCTTTCATGGAGAG 59.779 41.667 0.61 0.00 32.82 3.20
28 29 4.382362 GGCCAAATTTCTTTCATGGAGAGG 60.382 45.833 0.00 0.00 32.82 3.69
29 30 4.463891 GCCAAATTTCTTTCATGGAGAGGA 59.536 41.667 0.00 0.00 32.82 3.71
30 31 5.393896 GCCAAATTTCTTTCATGGAGAGGAG 60.394 44.000 0.00 0.00 32.82 3.69
31 32 5.713861 CCAAATTTCTTTCATGGAGAGGAGT 59.286 40.000 0.00 0.00 32.82 3.85
32 33 6.349944 CCAAATTTCTTTCATGGAGAGGAGTG 60.350 42.308 0.00 0.00 32.82 3.51
33 34 4.982241 TTTCTTTCATGGAGAGGAGTGT 57.018 40.909 0.00 0.00 0.00 3.55
34 35 4.982241 TTCTTTCATGGAGAGGAGTGTT 57.018 40.909 0.00 0.00 0.00 3.32
35 36 4.277515 TCTTTCATGGAGAGGAGTGTTG 57.722 45.455 0.00 0.00 0.00 3.33
36 37 2.479566 TTCATGGAGAGGAGTGTTGC 57.520 50.000 0.00 0.00 0.00 4.17
37 38 0.247460 TCATGGAGAGGAGTGTTGCG 59.753 55.000 0.00 0.00 0.00 4.85
38 39 0.247460 CATGGAGAGGAGTGTTGCGA 59.753 55.000 0.00 0.00 0.00 5.10
39 40 1.134580 CATGGAGAGGAGTGTTGCGAT 60.135 52.381 0.00 0.00 0.00 4.58
40 41 0.247460 TGGAGAGGAGTGTTGCGATG 59.753 55.000 0.00 0.00 0.00 3.84
41 42 0.532573 GGAGAGGAGTGTTGCGATGA 59.467 55.000 0.00 0.00 0.00 2.92
42 43 1.634702 GAGAGGAGTGTTGCGATGAC 58.365 55.000 0.00 0.00 0.00 3.06
43 44 0.969149 AGAGGAGTGTTGCGATGACA 59.031 50.000 0.00 0.00 0.00 3.58
44 45 1.067283 AGAGGAGTGTTGCGATGACAG 60.067 52.381 0.00 0.00 0.00 3.51
45 46 0.671781 AGGAGTGTTGCGATGACAGC 60.672 55.000 0.00 0.00 0.00 4.40
46 47 1.639298 GGAGTGTTGCGATGACAGCC 61.639 60.000 0.00 0.00 0.00 4.85
47 48 1.639298 GAGTGTTGCGATGACAGCCC 61.639 60.000 0.00 0.00 0.00 5.19
48 49 1.672356 GTGTTGCGATGACAGCCCT 60.672 57.895 0.00 0.00 0.00 5.19
49 50 1.672030 TGTTGCGATGACAGCCCTG 60.672 57.895 0.00 0.00 0.00 4.45
50 51 2.046023 TTGCGATGACAGCCCTGG 60.046 61.111 0.00 0.00 34.19 4.45
51 52 2.592032 TTGCGATGACAGCCCTGGA 61.592 57.895 0.00 0.00 34.19 3.86
52 53 2.123248 TTGCGATGACAGCCCTGGAA 62.123 55.000 0.00 0.00 34.19 3.53
53 54 2.109126 GCGATGACAGCCCTGGAAC 61.109 63.158 0.00 0.00 34.19 3.62
54 55 1.450312 CGATGACAGCCCTGGAACC 60.450 63.158 0.00 0.00 34.19 3.62
55 56 1.903877 CGATGACAGCCCTGGAACCT 61.904 60.000 0.00 0.00 34.19 3.50
56 57 1.204146 GATGACAGCCCTGGAACCTA 58.796 55.000 0.00 0.00 34.19 3.08
57 58 1.559682 GATGACAGCCCTGGAACCTAA 59.440 52.381 0.00 0.00 34.19 2.69
58 59 0.984230 TGACAGCCCTGGAACCTAAG 59.016 55.000 0.00 0.00 34.19 2.18
59 60 1.276622 GACAGCCCTGGAACCTAAGA 58.723 55.000 0.00 0.00 34.19 2.10
60 61 1.628846 GACAGCCCTGGAACCTAAGAA 59.371 52.381 0.00 0.00 34.19 2.52
61 62 2.039879 GACAGCCCTGGAACCTAAGAAA 59.960 50.000 0.00 0.00 34.19 2.52
62 63 2.649816 ACAGCCCTGGAACCTAAGAAAT 59.350 45.455 0.00 0.00 34.19 2.17
63 64 3.019564 CAGCCCTGGAACCTAAGAAATG 58.980 50.000 0.00 0.00 0.00 2.32
64 65 2.024941 AGCCCTGGAACCTAAGAAATGG 60.025 50.000 0.00 0.00 0.00 3.16
65 66 2.291605 GCCCTGGAACCTAAGAAATGGT 60.292 50.000 0.00 0.00 38.35 3.55
66 67 3.356290 CCCTGGAACCTAAGAAATGGTG 58.644 50.000 0.00 0.00 36.57 4.17
67 68 3.010138 CCCTGGAACCTAAGAAATGGTGA 59.990 47.826 0.00 0.00 36.57 4.02
68 69 4.325344 CCCTGGAACCTAAGAAATGGTGAT 60.325 45.833 0.00 0.00 36.57 3.06
69 70 5.104109 CCCTGGAACCTAAGAAATGGTGATA 60.104 44.000 0.00 0.00 36.57 2.15
70 71 6.423182 CCTGGAACCTAAGAAATGGTGATAA 58.577 40.000 0.00 0.00 36.57 1.75
71 72 7.062957 CCTGGAACCTAAGAAATGGTGATAAT 58.937 38.462 0.00 0.00 36.57 1.28
72 73 8.217799 CCTGGAACCTAAGAAATGGTGATAATA 58.782 37.037 0.00 0.00 36.57 0.98
73 74 9.277783 CTGGAACCTAAGAAATGGTGATAATAG 57.722 37.037 0.00 0.00 36.57 1.73
74 75 7.719633 TGGAACCTAAGAAATGGTGATAATAGC 59.280 37.037 0.00 0.00 36.57 2.97
75 76 7.175119 GGAACCTAAGAAATGGTGATAATAGCC 59.825 40.741 0.00 0.00 36.57 3.93
76 77 7.394144 ACCTAAGAAATGGTGATAATAGCCT 57.606 36.000 0.00 0.00 34.90 4.58
77 78 7.454225 ACCTAAGAAATGGTGATAATAGCCTC 58.546 38.462 0.00 0.00 34.90 4.70
78 79 7.072454 ACCTAAGAAATGGTGATAATAGCCTCA 59.928 37.037 0.00 0.00 34.90 3.86
79 80 7.389053 CCTAAGAAATGGTGATAATAGCCTCAC 59.611 40.741 0.00 0.00 40.82 3.51
80 81 5.300752 AGAAATGGTGATAATAGCCTCACG 58.699 41.667 0.00 0.00 42.14 4.35
81 82 4.955811 AATGGTGATAATAGCCTCACGA 57.044 40.909 0.00 0.00 42.14 4.35
82 83 4.955811 ATGGTGATAATAGCCTCACGAA 57.044 40.909 0.00 0.00 42.14 3.85
83 84 4.322080 TGGTGATAATAGCCTCACGAAG 57.678 45.455 0.00 0.00 42.14 3.79
84 85 3.958147 TGGTGATAATAGCCTCACGAAGA 59.042 43.478 0.00 0.00 42.14 2.87
85 86 4.588951 TGGTGATAATAGCCTCACGAAGAT 59.411 41.667 0.00 0.00 42.14 2.40
86 87 5.773176 TGGTGATAATAGCCTCACGAAGATA 59.227 40.000 0.00 0.00 42.14 1.98
87 88 6.266786 TGGTGATAATAGCCTCACGAAGATAA 59.733 38.462 0.00 0.00 42.14 1.75
88 89 6.809196 GGTGATAATAGCCTCACGAAGATAAG 59.191 42.308 0.00 0.00 42.14 1.73
89 90 7.309255 GGTGATAATAGCCTCACGAAGATAAGA 60.309 40.741 0.00 0.00 42.14 2.10
90 91 7.753132 GTGATAATAGCCTCACGAAGATAAGAG 59.247 40.741 0.00 0.00 33.14 2.85
91 92 7.448777 TGATAATAGCCTCACGAAGATAAGAGT 59.551 37.037 0.00 0.00 0.00 3.24
92 93 6.472686 AATAGCCTCACGAAGATAAGAGTT 57.527 37.500 0.00 0.00 0.00 3.01
93 94 7.584122 AATAGCCTCACGAAGATAAGAGTTA 57.416 36.000 0.00 0.00 0.00 2.24
94 95 7.768807 ATAGCCTCACGAAGATAAGAGTTAT 57.231 36.000 0.00 0.00 0.00 1.89
95 96 6.079424 AGCCTCACGAAGATAAGAGTTATC 57.921 41.667 0.00 0.00 41.83 1.75
96 97 5.010213 AGCCTCACGAAGATAAGAGTTATCC 59.990 44.000 0.00 0.00 42.35 2.59
97 98 5.010213 GCCTCACGAAGATAAGAGTTATCCT 59.990 44.000 0.00 0.00 42.35 3.24
98 99 6.442952 CCTCACGAAGATAAGAGTTATCCTG 58.557 44.000 0.00 0.00 42.35 3.86
99 100 6.392625 TCACGAAGATAAGAGTTATCCTGG 57.607 41.667 0.00 0.00 42.35 4.45
100 101 5.892119 TCACGAAGATAAGAGTTATCCTGGT 59.108 40.000 0.00 0.00 42.35 4.00
101 102 6.039493 TCACGAAGATAAGAGTTATCCTGGTC 59.961 42.308 0.00 0.00 42.35 4.02
102 103 5.892119 ACGAAGATAAGAGTTATCCTGGTCA 59.108 40.000 0.00 0.00 42.35 4.02
103 104 6.039941 ACGAAGATAAGAGTTATCCTGGTCAG 59.960 42.308 0.00 0.00 42.35 3.51
104 105 6.039941 CGAAGATAAGAGTTATCCTGGTCAGT 59.960 42.308 3.54 0.00 42.35 3.41
105 106 7.416890 CGAAGATAAGAGTTATCCTGGTCAGTT 60.417 40.741 3.54 0.00 42.35 3.16
106 107 7.118496 AGATAAGAGTTATCCTGGTCAGTTG 57.882 40.000 3.54 0.00 42.35 3.16
107 108 6.670027 AGATAAGAGTTATCCTGGTCAGTTGT 59.330 38.462 3.54 0.00 42.35 3.32
108 109 5.568620 AAGAGTTATCCTGGTCAGTTGTT 57.431 39.130 0.00 0.00 0.00 2.83
109 110 5.153950 AGAGTTATCCTGGTCAGTTGTTC 57.846 43.478 0.00 0.00 0.00 3.18
110 111 4.020128 AGAGTTATCCTGGTCAGTTGTTCC 60.020 45.833 0.00 0.00 0.00 3.62
111 112 3.910627 AGTTATCCTGGTCAGTTGTTCCT 59.089 43.478 0.00 0.00 0.00 3.36
112 113 2.867109 ATCCTGGTCAGTTGTTCCTG 57.133 50.000 0.00 0.00 0.00 3.86
113 114 1.507140 TCCTGGTCAGTTGTTCCTGT 58.493 50.000 0.00 0.00 34.02 4.00
114 115 1.140852 TCCTGGTCAGTTGTTCCTGTG 59.859 52.381 0.00 0.00 34.02 3.66
115 116 1.597742 CTGGTCAGTTGTTCCTGTGG 58.402 55.000 0.00 0.00 34.02 4.17
116 117 0.182537 TGGTCAGTTGTTCCTGTGGG 59.817 55.000 0.00 0.00 34.02 4.61
117 118 0.472471 GGTCAGTTGTTCCTGTGGGA 59.528 55.000 0.00 0.00 40.36 4.37
127 128 0.038166 TCCTGTGGGAAATGGAGTGC 59.962 55.000 0.00 0.00 38.93 4.40
128 129 0.967380 CCTGTGGGAAATGGAGTGCC 60.967 60.000 0.00 0.00 33.58 5.01
129 130 3.625571 CCTGTGGGAAATGGAGTGCCA 62.626 57.143 0.00 0.00 41.36 4.92
130 131 4.877575 CCTGTGGGAAATGGAGTGCCAT 62.878 54.545 0.00 0.00 45.80 4.40
131 132 5.532425 CCTGTGGGAAATGGAGTGCCATA 62.532 52.174 0.00 0.00 44.21 2.74
144 145 3.866651 AGTGCCATAGACACTGATGAAC 58.133 45.455 0.00 0.00 46.38 3.18
145 146 2.939103 GTGCCATAGACACTGATGAACC 59.061 50.000 0.00 0.00 35.12 3.62
146 147 2.571202 TGCCATAGACACTGATGAACCA 59.429 45.455 0.00 0.00 0.00 3.67
147 148 2.939103 GCCATAGACACTGATGAACCAC 59.061 50.000 0.00 0.00 0.00 4.16
148 149 3.619733 GCCATAGACACTGATGAACCACA 60.620 47.826 0.00 0.00 0.00 4.17
149 150 4.578871 CCATAGACACTGATGAACCACAA 58.421 43.478 0.00 0.00 0.00 3.33
150 151 5.003160 CCATAGACACTGATGAACCACAAA 58.997 41.667 0.00 0.00 0.00 2.83
151 152 5.106555 CCATAGACACTGATGAACCACAAAC 60.107 44.000 0.00 0.00 0.00 2.93
152 153 3.214328 AGACACTGATGAACCACAAACC 58.786 45.455 0.00 0.00 0.00 3.27
153 154 1.946768 ACACTGATGAACCACAAACCG 59.053 47.619 0.00 0.00 0.00 4.44
154 155 0.951558 ACTGATGAACCACAAACCGC 59.048 50.000 0.00 0.00 0.00 5.68
155 156 1.238439 CTGATGAACCACAAACCGCT 58.762 50.000 0.00 0.00 0.00 5.52
156 157 1.608590 CTGATGAACCACAAACCGCTT 59.391 47.619 0.00 0.00 0.00 4.68
157 158 1.606668 TGATGAACCACAAACCGCTTC 59.393 47.619 0.00 0.00 0.00 3.86
158 159 0.958822 ATGAACCACAAACCGCTTCC 59.041 50.000 0.00 0.00 0.00 3.46
159 160 1.281656 GAACCACAAACCGCTTCCG 59.718 57.895 0.00 0.00 0.00 4.30
160 161 2.726850 GAACCACAAACCGCTTCCGC 62.727 60.000 0.00 0.00 0.00 5.54
161 162 4.038080 CCACAAACCGCTTCCGCC 62.038 66.667 0.00 0.00 0.00 6.13
162 163 3.283684 CACAAACCGCTTCCGCCA 61.284 61.111 0.00 0.00 0.00 5.69
163 164 2.282180 ACAAACCGCTTCCGCCAT 60.282 55.556 0.00 0.00 0.00 4.40
164 165 2.332654 ACAAACCGCTTCCGCCATC 61.333 57.895 0.00 0.00 0.00 3.51
165 166 2.033448 AAACCGCTTCCGCCATCA 59.967 55.556 0.00 0.00 0.00 3.07
166 167 2.040544 AAACCGCTTCCGCCATCAG 61.041 57.895 0.00 0.00 0.00 2.90
170 171 3.512516 GCTTCCGCCATCAGCCAC 61.513 66.667 0.00 0.00 38.78 5.01
171 172 2.270205 CTTCCGCCATCAGCCACT 59.730 61.111 0.00 0.00 38.78 4.00
172 173 1.522092 CTTCCGCCATCAGCCACTA 59.478 57.895 0.00 0.00 38.78 2.74
173 174 0.531532 CTTCCGCCATCAGCCACTAG 60.532 60.000 0.00 0.00 38.78 2.57
174 175 0.975556 TTCCGCCATCAGCCACTAGA 60.976 55.000 0.00 0.00 38.78 2.43
175 176 0.975556 TCCGCCATCAGCCACTAGAA 60.976 55.000 0.00 0.00 38.78 2.10
176 177 0.107703 CCGCCATCAGCCACTAGAAA 60.108 55.000 0.00 0.00 38.78 2.52
177 178 1.475751 CCGCCATCAGCCACTAGAAAT 60.476 52.381 0.00 0.00 38.78 2.17
178 179 1.600957 CGCCATCAGCCACTAGAAATG 59.399 52.381 0.00 0.00 38.78 2.32
179 180 2.648059 GCCATCAGCCACTAGAAATGT 58.352 47.619 0.00 0.00 34.35 2.71
180 181 3.019564 GCCATCAGCCACTAGAAATGTT 58.980 45.455 0.00 0.00 34.35 2.71
181 182 3.181493 GCCATCAGCCACTAGAAATGTTG 60.181 47.826 0.00 0.00 34.35 3.33
182 183 4.012374 CCATCAGCCACTAGAAATGTTGT 58.988 43.478 0.00 0.00 0.00 3.32
183 184 4.142534 CCATCAGCCACTAGAAATGTTGTG 60.143 45.833 0.00 0.00 0.00 3.33
184 185 4.085357 TCAGCCACTAGAAATGTTGTGT 57.915 40.909 0.00 0.00 0.00 3.72
185 186 4.460263 TCAGCCACTAGAAATGTTGTGTT 58.540 39.130 0.00 0.00 0.00 3.32
186 187 4.275689 TCAGCCACTAGAAATGTTGTGTTG 59.724 41.667 0.00 0.00 0.00 3.33
187 188 4.036734 CAGCCACTAGAAATGTTGTGTTGT 59.963 41.667 0.00 0.00 0.00 3.32
188 189 5.238432 CAGCCACTAGAAATGTTGTGTTGTA 59.762 40.000 0.00 0.00 0.00 2.41
189 190 5.238650 AGCCACTAGAAATGTTGTGTTGTAC 59.761 40.000 0.00 0.00 0.00 2.90
190 191 5.238650 GCCACTAGAAATGTTGTGTTGTACT 59.761 40.000 0.00 0.00 0.00 2.73
191 192 6.565999 GCCACTAGAAATGTTGTGTTGTACTC 60.566 42.308 0.00 0.00 0.00 2.59
192 193 6.481976 CCACTAGAAATGTTGTGTTGTACTCA 59.518 38.462 0.00 0.00 0.00 3.41
193 194 7.345192 CACTAGAAATGTTGTGTTGTACTCAC 58.655 38.462 0.00 12.47 36.48 3.51
194 195 7.011016 CACTAGAAATGTTGTGTTGTACTCACA 59.989 37.037 16.27 16.27 42.84 3.58
195 196 6.363577 AGAAATGTTGTGTTGTACTCACAG 57.636 37.500 18.28 0.00 44.71 3.66
196 197 5.296780 AGAAATGTTGTGTTGTACTCACAGG 59.703 40.000 18.28 0.00 44.71 4.00
197 198 2.285083 TGTTGTGTTGTACTCACAGGC 58.715 47.619 18.28 16.12 44.71 4.85
198 199 1.602377 GTTGTGTTGTACTCACAGGCC 59.398 52.381 18.28 0.00 44.71 5.19
199 200 0.833949 TGTGTTGTACTCACAGGCCA 59.166 50.000 5.01 3.14 40.26 5.36
200 201 1.202639 TGTGTTGTACTCACAGGCCAG 60.203 52.381 5.01 0.00 40.26 4.85
201 202 1.070134 GTGTTGTACTCACAGGCCAGA 59.930 52.381 5.01 0.00 35.67 3.86
202 203 1.765904 TGTTGTACTCACAGGCCAGAA 59.234 47.619 5.01 0.00 35.67 3.02
203 204 2.371841 TGTTGTACTCACAGGCCAGAAT 59.628 45.455 5.01 0.00 35.67 2.40
204 205 2.744202 GTTGTACTCACAGGCCAGAATG 59.256 50.000 5.01 0.00 35.67 2.67
225 226 9.959721 AGAATGGTCTTGTACTACATATTTTGT 57.040 29.630 0.00 0.00 42.62 2.83
245 246 8.729805 TTTTGTATTTTGCTTGGAATTTCTGT 57.270 26.923 0.00 0.00 0.00 3.41
246 247 9.823647 TTTTGTATTTTGCTTGGAATTTCTGTA 57.176 25.926 0.00 0.00 0.00 2.74
247 248 9.995003 TTTGTATTTTGCTTGGAATTTCTGTAT 57.005 25.926 0.00 0.00 0.00 2.29
248 249 9.638239 TTGTATTTTGCTTGGAATTTCTGTATC 57.362 29.630 0.00 0.00 0.00 2.24
249 250 8.801299 TGTATTTTGCTTGGAATTTCTGTATCA 58.199 29.630 0.00 0.00 0.00 2.15
250 251 9.638239 GTATTTTGCTTGGAATTTCTGTATCAA 57.362 29.630 0.00 0.00 0.00 2.57
251 252 8.767478 ATTTTGCTTGGAATTTCTGTATCAAG 57.233 30.769 7.56 7.56 35.90 3.02
252 253 6.899393 TTGCTTGGAATTTCTGTATCAAGT 57.101 33.333 11.48 0.00 35.43 3.16
253 254 6.899393 TGCTTGGAATTTCTGTATCAAGTT 57.101 33.333 11.48 0.00 35.43 2.66
254 255 6.680810 TGCTTGGAATTTCTGTATCAAGTTG 58.319 36.000 0.00 0.00 35.43 3.16
255 256 6.095377 GCTTGGAATTTCTGTATCAAGTTGG 58.905 40.000 2.34 0.00 35.43 3.77
256 257 6.294731 GCTTGGAATTTCTGTATCAAGTTGGT 60.295 38.462 2.34 0.00 35.43 3.67
257 258 6.573664 TGGAATTTCTGTATCAAGTTGGTG 57.426 37.500 2.34 0.00 0.00 4.17
258 259 5.048083 TGGAATTTCTGTATCAAGTTGGTGC 60.048 40.000 2.34 0.00 0.00 5.01
259 260 5.391312 AATTTCTGTATCAAGTTGGTGCC 57.609 39.130 2.34 0.00 0.00 5.01
260 261 3.788227 TTCTGTATCAAGTTGGTGCCT 57.212 42.857 2.34 0.00 0.00 4.75
261 262 3.334583 TCTGTATCAAGTTGGTGCCTC 57.665 47.619 2.34 0.00 0.00 4.70
262 263 2.637382 TCTGTATCAAGTTGGTGCCTCA 59.363 45.455 2.34 0.00 0.00 3.86
263 264 3.264193 TCTGTATCAAGTTGGTGCCTCAT 59.736 43.478 2.34 0.00 0.00 2.90
264 265 3.609853 TGTATCAAGTTGGTGCCTCATC 58.390 45.455 2.34 0.00 0.00 2.92
265 266 2.885135 ATCAAGTTGGTGCCTCATCA 57.115 45.000 2.34 0.00 0.00 3.07
266 267 2.189594 TCAAGTTGGTGCCTCATCAG 57.810 50.000 2.34 0.00 0.00 2.90
267 268 0.524862 CAAGTTGGTGCCTCATCAGC 59.475 55.000 0.00 0.00 35.22 4.26
268 269 0.403271 AAGTTGGTGCCTCATCAGCT 59.597 50.000 0.00 0.00 37.63 4.24
269 270 1.279496 AGTTGGTGCCTCATCAGCTA 58.721 50.000 0.00 0.00 34.42 3.32
270 271 1.630369 AGTTGGTGCCTCATCAGCTAA 59.370 47.619 0.00 0.00 34.42 3.09
271 272 1.740025 GTTGGTGCCTCATCAGCTAAC 59.260 52.381 0.00 0.00 35.63 2.34
272 273 0.983467 TGGTGCCTCATCAGCTAACA 59.017 50.000 0.00 0.00 35.63 2.41
273 274 1.065926 TGGTGCCTCATCAGCTAACAG 60.066 52.381 0.00 0.00 35.63 3.16
274 275 1.065854 GGTGCCTCATCAGCTAACAGT 60.066 52.381 0.00 0.00 0.00 3.55
275 276 2.168521 GGTGCCTCATCAGCTAACAGTA 59.831 50.000 0.00 0.00 0.00 2.74
276 277 3.369471 GGTGCCTCATCAGCTAACAGTAA 60.369 47.826 0.00 0.00 0.00 2.24
277 278 4.446371 GTGCCTCATCAGCTAACAGTAAT 58.554 43.478 0.00 0.00 0.00 1.89
278 279 4.509600 GTGCCTCATCAGCTAACAGTAATC 59.490 45.833 0.00 0.00 0.00 1.75
279 280 4.061596 GCCTCATCAGCTAACAGTAATCC 58.938 47.826 0.00 0.00 0.00 3.01
280 281 4.202305 GCCTCATCAGCTAACAGTAATCCT 60.202 45.833 0.00 0.00 0.00 3.24
282 283 5.282055 TCATCAGCTAACAGTAATCCTGG 57.718 43.478 0.00 0.00 46.06 4.45
283 284 4.101585 TCATCAGCTAACAGTAATCCTGGG 59.898 45.833 0.00 0.00 46.06 4.45
284 285 2.771943 TCAGCTAACAGTAATCCTGGGG 59.228 50.000 0.00 0.00 46.06 4.96
285 286 1.490910 AGCTAACAGTAATCCTGGGGC 59.509 52.381 0.00 0.00 46.06 5.80
286 287 1.490910 GCTAACAGTAATCCTGGGGCT 59.509 52.381 0.00 0.00 46.06 5.19
287 288 2.746472 GCTAACAGTAATCCTGGGGCTG 60.746 54.545 0.00 0.34 46.06 4.85
288 289 0.625849 AACAGTAATCCTGGGGCTGG 59.374 55.000 0.00 0.00 46.06 4.85
289 290 0.550147 ACAGTAATCCTGGGGCTGGT 60.550 55.000 0.00 0.00 46.06 4.00
290 291 0.107017 CAGTAATCCTGGGGCTGGTG 60.107 60.000 0.00 0.00 37.54 4.17
291 292 0.253160 AGTAATCCTGGGGCTGGTGA 60.253 55.000 0.00 0.00 0.00 4.02
292 293 0.181350 GTAATCCTGGGGCTGGTGAG 59.819 60.000 0.00 0.00 0.00 3.51
293 294 1.635817 TAATCCTGGGGCTGGTGAGC 61.636 60.000 0.00 0.00 45.40 4.26
301 302 3.368571 GCTGGTGAGCACAAGGGC 61.369 66.667 7.11 0.00 45.46 5.19
302 303 2.674380 CTGGTGAGCACAAGGGCC 60.674 66.667 0.00 0.00 0.00 5.80
303 304 3.496309 CTGGTGAGCACAAGGGCCA 62.496 63.158 6.18 0.00 0.00 5.36
304 305 2.036256 GGTGAGCACAAGGGCCAT 59.964 61.111 6.18 0.00 0.00 4.40
305 306 1.607467 GGTGAGCACAAGGGCCATT 60.607 57.895 6.18 0.00 0.00 3.16
306 307 1.187567 GGTGAGCACAAGGGCCATTT 61.188 55.000 6.18 0.00 0.00 2.32
307 308 0.681175 GTGAGCACAAGGGCCATTTT 59.319 50.000 6.18 0.00 0.00 1.82
308 309 0.968405 TGAGCACAAGGGCCATTTTC 59.032 50.000 6.18 0.00 0.00 2.29
309 310 1.260544 GAGCACAAGGGCCATTTTCT 58.739 50.000 6.18 0.00 0.00 2.52
310 311 0.971386 AGCACAAGGGCCATTTTCTG 59.029 50.000 6.18 0.00 0.00 3.02
312 313 0.609662 CACAAGGGCCATTTTCTGGG 59.390 55.000 6.18 0.00 46.06 4.45
313 314 0.486879 ACAAGGGCCATTTTCTGGGA 59.513 50.000 6.18 0.00 46.06 4.37
314 315 1.132881 ACAAGGGCCATTTTCTGGGAA 60.133 47.619 6.18 0.00 46.06 3.97
315 316 1.977129 CAAGGGCCATTTTCTGGGAAA 59.023 47.619 6.18 0.00 46.06 3.13
316 317 1.644509 AGGGCCATTTTCTGGGAAAC 58.355 50.000 6.18 0.00 46.06 2.78
317 318 1.149923 AGGGCCATTTTCTGGGAAACT 59.850 47.619 6.18 0.00 46.06 2.66
318 319 2.381961 AGGGCCATTTTCTGGGAAACTA 59.618 45.455 6.18 0.00 46.06 2.24
319 320 3.169908 GGGCCATTTTCTGGGAAACTAA 58.830 45.455 4.39 0.00 46.06 2.24
320 321 3.774766 GGGCCATTTTCTGGGAAACTAAT 59.225 43.478 4.39 0.00 46.06 1.73
321 322 4.959839 GGGCCATTTTCTGGGAAACTAATA 59.040 41.667 4.39 0.00 46.06 0.98
322 323 5.602561 GGGCCATTTTCTGGGAAACTAATAT 59.397 40.000 4.39 0.00 46.06 1.28
323 324 6.239317 GGGCCATTTTCTGGGAAACTAATATC 60.239 42.308 4.39 0.00 46.06 1.63
324 325 6.551227 GGCCATTTTCTGGGAAACTAATATCT 59.449 38.462 0.00 0.00 46.06 1.98
325 326 7.255625 GGCCATTTTCTGGGAAACTAATATCTC 60.256 40.741 0.00 0.00 46.06 2.75
326 327 7.520614 GCCATTTTCTGGGAAACTAATATCTCG 60.521 40.741 0.00 0.00 46.06 4.04
327 328 7.715249 CCATTTTCTGGGAAACTAATATCTCGA 59.285 37.037 0.00 0.00 41.82 4.04
328 329 9.109393 CATTTTCTGGGAAACTAATATCTCGAA 57.891 33.333 0.00 0.00 0.00 3.71
329 330 9.681062 ATTTTCTGGGAAACTAATATCTCGAAA 57.319 29.630 0.00 0.00 0.00 3.46
330 331 9.509956 TTTTCTGGGAAACTAATATCTCGAAAA 57.490 29.630 0.00 0.00 32.03 2.29
331 332 9.681062 TTTCTGGGAAACTAATATCTCGAAAAT 57.319 29.630 0.00 0.00 0.00 1.82
332 333 8.888579 TCTGGGAAACTAATATCTCGAAAATC 57.111 34.615 0.00 0.00 0.00 2.17
333 334 7.931948 TCTGGGAAACTAATATCTCGAAAATCC 59.068 37.037 0.00 0.00 0.00 3.01
334 335 6.704493 TGGGAAACTAATATCTCGAAAATCCG 59.296 38.462 0.00 0.00 0.00 4.18
335 336 6.147328 GGGAAACTAATATCTCGAAAATCCGG 59.853 42.308 0.00 0.00 0.00 5.14
336 337 6.704937 GGAAACTAATATCTCGAAAATCCGGT 59.295 38.462 0.00 0.00 0.00 5.28
337 338 7.095732 GGAAACTAATATCTCGAAAATCCGGTC 60.096 40.741 0.00 0.00 0.00 4.79
338 339 5.780984 ACTAATATCTCGAAAATCCGGTCC 58.219 41.667 0.00 0.00 0.00 4.46
339 340 4.957684 AATATCTCGAAAATCCGGTCCT 57.042 40.909 0.00 0.00 0.00 3.85
340 341 2.604046 ATCTCGAAAATCCGGTCCTG 57.396 50.000 0.00 0.00 0.00 3.86
341 342 1.552578 TCTCGAAAATCCGGTCCTGA 58.447 50.000 0.00 0.00 0.00 3.86
342 343 1.203994 TCTCGAAAATCCGGTCCTGAC 59.796 52.381 0.00 0.00 0.00 3.51
356 357 4.096231 CGGTCCTGACAATAATGAAATGCA 59.904 41.667 0.00 0.00 0.00 3.96
483 490 0.896479 TGCACTAGCCAGACCGTACA 60.896 55.000 0.00 0.00 41.13 2.90
533 540 9.683069 GAAATCATAGGTGCCAAATACATAAAG 57.317 33.333 0.00 0.00 0.00 1.85
644 660 5.412594 TGGAGCGAATAAATGCCATAATCTC 59.587 40.000 0.00 0.00 0.00 2.75
647 663 5.349817 AGCGAATAAATGCCATAATCTCGAG 59.650 40.000 5.93 5.93 0.00 4.04
708 724 4.352009 TGGGAGCCAATAAAATGTCACAT 58.648 39.130 0.00 0.00 0.00 3.21
883 1894 8.430573 TCATCCGAGGATCCTTATTAATTACA 57.569 34.615 17.42 0.00 31.62 2.41
885 1896 8.531982 CATCCGAGGATCCTTATTAATTACAGA 58.468 37.037 17.42 0.00 31.62 3.41
906 1917 6.094325 ACAGAGAATTGTAAAACGGAAACACA 59.906 34.615 0.00 0.00 0.00 3.72
960 1971 6.499106 TTGATACTCCAAGAATCAGCCATA 57.501 37.500 0.00 0.00 31.64 2.74
1110 2121 3.896888 TGATGGCACTTTTGATGGTTTCT 59.103 39.130 0.00 0.00 0.00 2.52
1222 2233 5.191722 TGTGGTTTCCTGGAGCTAGATAAAT 59.808 40.000 0.00 0.00 0.00 1.40
1256 2267 2.331194 GCATCATTCTGTGTTGCCAAC 58.669 47.619 0.00 0.00 44.22 3.77
1350 2362 2.829720 TCAACCGTGCCTAATAGAGTGT 59.170 45.455 0.00 0.00 0.00 3.55
1354 2366 2.481449 CCGTGCCTAATAGAGTGTGGTC 60.481 54.545 0.00 0.00 0.00 4.02
1648 2662 6.934083 TCTTCATGTGTTTGTATTAGCACTCA 59.066 34.615 0.00 0.00 33.44 3.41
1676 2690 8.074613 TGTTGTCCTACTATTTGCATAGTACT 57.925 34.615 0.00 0.00 43.39 2.73
1723 2737 6.870971 AAATACGAACAGCAAAAGGTTCTA 57.129 33.333 0.00 0.00 40.88 2.10
1823 2841 7.696453 CCATGTACGAATCCTTCATTTTGTAAC 59.304 37.037 0.00 0.00 0.00 2.50
1848 2866 4.558226 ATCTGCAACAGAGATGGTTACA 57.442 40.909 3.42 0.00 44.08 2.41
1849 2867 4.350368 TCTGCAACAGAGATGGTTACAA 57.650 40.909 0.00 0.00 35.39 2.41
2085 3107 0.908910 TGCACTCACCGTATTGGGAT 59.091 50.000 0.00 0.00 44.64 3.85
2093 3115 5.357032 ACTCACCGTATTGGGATGATTTTTC 59.643 40.000 0.00 0.00 44.64 2.29
2237 3260 1.980765 ACCTTCTGCAGACCTTGATGA 59.019 47.619 18.03 0.00 0.00 2.92
2324 3347 9.626045 GAAAACATATTATGGCTTATTGGCTAC 57.374 33.333 8.48 0.00 42.34 3.58
2343 3366 4.816925 GCTACTGGGACCAAATAGATTCAC 59.183 45.833 11.57 0.00 0.00 3.18
2345 3368 6.183360 GCTACTGGGACCAAATAGATTCACTA 60.183 42.308 11.57 0.00 35.42 2.74
2396 3419 6.097270 CCAATGGTCCATCAAACATATTCAGT 59.903 38.462 4.39 0.00 0.00 3.41
2417 3440 2.930950 TGGAAACTAACAAGCTGCAGT 58.069 42.857 16.64 0.00 0.00 4.40
2420 3443 3.548818 GGAAACTAACAAGCTGCAGTGTG 60.549 47.826 16.64 15.59 0.00 3.82
2522 3545 2.354203 GCTAGCTCCAGTGCTTGTAGTT 60.354 50.000 7.70 0.00 43.74 2.24
2536 3559 3.021269 TGTAGTTGTCGCTAAGTGGTG 57.979 47.619 0.00 0.00 0.00 4.17
2544 3567 2.165845 GTCGCTAAGTGGTGTATGGACT 59.834 50.000 0.00 0.00 0.00 3.85
2619 3642 2.554032 ACTTCCTCGGTTGCATTTCTTG 59.446 45.455 0.00 0.00 0.00 3.02
2738 3761 4.935808 CGCCAGGTGTCTTCTAGTTATTTT 59.064 41.667 0.00 0.00 0.00 1.82
2846 3870 5.752036 TCTGATCACTTTCTCCATTGTCT 57.248 39.130 0.00 0.00 0.00 3.41
2847 3871 6.857437 TCTGATCACTTTCTCCATTGTCTA 57.143 37.500 0.00 0.00 0.00 2.59
2877 3901 0.037882 CGACACTCTCACATGCACCT 60.038 55.000 0.00 0.00 0.00 4.00
2878 3902 1.719600 GACACTCTCACATGCACCTC 58.280 55.000 0.00 0.00 0.00 3.85
2908 3932 4.783764 TCTAGTTCTCGTTTCATGAGCA 57.216 40.909 0.00 0.00 31.39 4.26
2914 3938 4.944619 TCTCGTTTCATGAGCAGGATAT 57.055 40.909 0.00 0.00 31.39 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.248934 TCCATGAAAGAAATTTGGCCAAGAT 59.751 36.000 19.48 12.29 0.00 2.40
1 2 4.592351 TCCATGAAAGAAATTTGGCCAAGA 59.408 37.500 19.48 10.42 0.00 3.02
4 5 4.158786 TCTCCATGAAAGAAATTTGGCCA 58.841 39.130 0.00 0.00 0.00 5.36
5 6 4.382362 CCTCTCCATGAAAGAAATTTGGCC 60.382 45.833 0.00 0.00 0.00 5.36
6 7 4.463891 TCCTCTCCATGAAAGAAATTTGGC 59.536 41.667 0.00 0.00 0.00 4.52
7 8 5.713861 ACTCCTCTCCATGAAAGAAATTTGG 59.286 40.000 0.00 0.00 0.00 3.28
8 9 6.208204 ACACTCCTCTCCATGAAAGAAATTTG 59.792 38.462 0.00 0.00 0.00 2.32
9 10 6.310149 ACACTCCTCTCCATGAAAGAAATTT 58.690 36.000 0.00 0.00 0.00 1.82
10 11 5.885465 ACACTCCTCTCCATGAAAGAAATT 58.115 37.500 0.00 0.00 0.00 1.82
11 12 5.511386 ACACTCCTCTCCATGAAAGAAAT 57.489 39.130 0.00 0.00 0.00 2.17
12 13 4.982241 ACACTCCTCTCCATGAAAGAAA 57.018 40.909 0.00 0.00 0.00 2.52
13 14 4.645535 CAACACTCCTCTCCATGAAAGAA 58.354 43.478 0.00 0.00 0.00 2.52
14 15 3.557898 GCAACACTCCTCTCCATGAAAGA 60.558 47.826 0.00 0.00 0.00 2.52
15 16 2.746362 GCAACACTCCTCTCCATGAAAG 59.254 50.000 0.00 0.00 0.00 2.62
16 17 2.783135 GCAACACTCCTCTCCATGAAA 58.217 47.619 0.00 0.00 0.00 2.69
17 18 1.338105 CGCAACACTCCTCTCCATGAA 60.338 52.381 0.00 0.00 0.00 2.57
18 19 0.247460 CGCAACACTCCTCTCCATGA 59.753 55.000 0.00 0.00 0.00 3.07
19 20 0.247460 TCGCAACACTCCTCTCCATG 59.753 55.000 0.00 0.00 0.00 3.66
20 21 1.134580 CATCGCAACACTCCTCTCCAT 60.135 52.381 0.00 0.00 0.00 3.41
21 22 0.247460 CATCGCAACACTCCTCTCCA 59.753 55.000 0.00 0.00 0.00 3.86
22 23 0.532573 TCATCGCAACACTCCTCTCC 59.467 55.000 0.00 0.00 0.00 3.71
23 24 1.067565 TGTCATCGCAACACTCCTCTC 60.068 52.381 0.00 0.00 0.00 3.20
24 25 0.969149 TGTCATCGCAACACTCCTCT 59.031 50.000 0.00 0.00 0.00 3.69
25 26 1.354040 CTGTCATCGCAACACTCCTC 58.646 55.000 0.00 0.00 0.00 3.71
26 27 0.671781 GCTGTCATCGCAACACTCCT 60.672 55.000 0.00 0.00 0.00 3.69
27 28 1.639298 GGCTGTCATCGCAACACTCC 61.639 60.000 0.00 0.00 0.00 3.85
28 29 1.639298 GGGCTGTCATCGCAACACTC 61.639 60.000 0.00 0.00 0.00 3.51
29 30 1.672356 GGGCTGTCATCGCAACACT 60.672 57.895 0.00 0.00 0.00 3.55
30 31 1.672356 AGGGCTGTCATCGCAACAC 60.672 57.895 0.00 0.00 0.00 3.32
31 32 1.672030 CAGGGCTGTCATCGCAACA 60.672 57.895 0.00 0.00 0.00 3.33
32 33 2.401766 CCAGGGCTGTCATCGCAAC 61.402 63.158 0.00 0.00 0.00 4.17
33 34 2.046023 CCAGGGCTGTCATCGCAA 60.046 61.111 0.00 0.00 0.00 4.85
34 35 2.592032 TTCCAGGGCTGTCATCGCA 61.592 57.895 0.00 0.00 0.00 5.10
35 36 2.109126 GTTCCAGGGCTGTCATCGC 61.109 63.158 0.00 0.00 0.00 4.58
36 37 1.450312 GGTTCCAGGGCTGTCATCG 60.450 63.158 0.00 0.00 0.00 3.84
37 38 1.204146 TAGGTTCCAGGGCTGTCATC 58.796 55.000 0.00 0.00 0.00 2.92
38 39 1.561542 CTTAGGTTCCAGGGCTGTCAT 59.438 52.381 0.00 0.00 0.00 3.06
39 40 0.984230 CTTAGGTTCCAGGGCTGTCA 59.016 55.000 0.00 0.00 0.00 3.58
40 41 1.276622 TCTTAGGTTCCAGGGCTGTC 58.723 55.000 0.00 0.00 0.00 3.51
41 42 1.742308 TTCTTAGGTTCCAGGGCTGT 58.258 50.000 0.00 0.00 0.00 4.40
42 43 2.879103 TTTCTTAGGTTCCAGGGCTG 57.121 50.000 0.00 0.00 0.00 4.85
43 44 2.024941 CCATTTCTTAGGTTCCAGGGCT 60.025 50.000 0.00 0.00 0.00 5.19
44 45 2.291605 ACCATTTCTTAGGTTCCAGGGC 60.292 50.000 0.00 0.00 33.39 5.19
45 46 3.010138 TCACCATTTCTTAGGTTCCAGGG 59.990 47.826 0.00 0.00 35.52 4.45
46 47 4.301072 TCACCATTTCTTAGGTTCCAGG 57.699 45.455 0.00 0.00 35.52 4.45
47 48 9.277783 CTATTATCACCATTTCTTAGGTTCCAG 57.722 37.037 0.00 0.00 35.52 3.86
48 49 7.719633 GCTATTATCACCATTTCTTAGGTTCCA 59.280 37.037 0.00 0.00 35.52 3.53
49 50 7.175119 GGCTATTATCACCATTTCTTAGGTTCC 59.825 40.741 0.00 0.00 35.52 3.62
50 51 7.939588 AGGCTATTATCACCATTTCTTAGGTTC 59.060 37.037 0.00 0.00 35.52 3.62
51 52 7.816411 AGGCTATTATCACCATTTCTTAGGTT 58.184 34.615 0.00 0.00 35.52 3.50
52 53 7.072454 TGAGGCTATTATCACCATTTCTTAGGT 59.928 37.037 0.00 0.00 39.10 3.08
53 54 7.389053 GTGAGGCTATTATCACCATTTCTTAGG 59.611 40.741 0.00 0.00 39.94 2.69
54 55 7.116948 CGTGAGGCTATTATCACCATTTCTTAG 59.883 40.741 0.00 0.00 42.28 2.18
55 56 6.929049 CGTGAGGCTATTATCACCATTTCTTA 59.071 38.462 0.00 0.00 42.28 2.10
56 57 5.760253 CGTGAGGCTATTATCACCATTTCTT 59.240 40.000 0.00 0.00 42.28 2.52
57 58 5.070446 TCGTGAGGCTATTATCACCATTTCT 59.930 40.000 0.00 0.00 42.28 2.52
58 59 5.297547 TCGTGAGGCTATTATCACCATTTC 58.702 41.667 0.00 0.00 42.28 2.17
59 60 5.290493 TCGTGAGGCTATTATCACCATTT 57.710 39.130 0.00 0.00 42.28 2.32
60 61 4.955811 TCGTGAGGCTATTATCACCATT 57.044 40.909 0.00 0.00 42.28 3.16
61 62 4.588951 TCTTCGTGAGGCTATTATCACCAT 59.411 41.667 0.00 0.00 42.28 3.55
62 63 3.958147 TCTTCGTGAGGCTATTATCACCA 59.042 43.478 0.00 0.00 42.28 4.17
63 64 4.585955 TCTTCGTGAGGCTATTATCACC 57.414 45.455 0.00 0.00 42.28 4.02
64 65 7.594714 TCTTATCTTCGTGAGGCTATTATCAC 58.405 38.462 0.00 0.00 41.93 3.06
65 66 7.448777 ACTCTTATCTTCGTGAGGCTATTATCA 59.551 37.037 0.00 0.00 0.00 2.15
66 67 7.822658 ACTCTTATCTTCGTGAGGCTATTATC 58.177 38.462 0.00 0.00 0.00 1.75
67 68 7.768807 ACTCTTATCTTCGTGAGGCTATTAT 57.231 36.000 0.00 0.00 0.00 1.28
68 69 7.584122 AACTCTTATCTTCGTGAGGCTATTA 57.416 36.000 0.00 0.00 0.00 0.98
69 70 6.472686 AACTCTTATCTTCGTGAGGCTATT 57.527 37.500 0.00 0.00 0.00 1.73
70 71 7.094118 GGATAACTCTTATCTTCGTGAGGCTAT 60.094 40.741 0.00 0.00 41.37 2.97
71 72 6.207025 GGATAACTCTTATCTTCGTGAGGCTA 59.793 42.308 0.00 0.00 41.37 3.93
72 73 5.010213 GGATAACTCTTATCTTCGTGAGGCT 59.990 44.000 0.00 0.00 41.37 4.58
73 74 5.010213 AGGATAACTCTTATCTTCGTGAGGC 59.990 44.000 2.78 0.00 41.37 4.70
74 75 6.442952 CAGGATAACTCTTATCTTCGTGAGG 58.557 44.000 2.78 0.00 41.37 3.86
75 76 6.039941 ACCAGGATAACTCTTATCTTCGTGAG 59.960 42.308 0.00 0.00 41.37 3.51
76 77 5.892119 ACCAGGATAACTCTTATCTTCGTGA 59.108 40.000 0.00 0.00 41.37 4.35
77 78 6.150396 ACCAGGATAACTCTTATCTTCGTG 57.850 41.667 0.00 0.00 41.37 4.35
78 79 5.892119 TGACCAGGATAACTCTTATCTTCGT 59.108 40.000 0.00 0.00 41.37 3.85
79 80 6.039941 ACTGACCAGGATAACTCTTATCTTCG 59.960 42.308 0.00 0.00 41.37 3.79
80 81 7.354751 ACTGACCAGGATAACTCTTATCTTC 57.645 40.000 0.00 0.00 41.37 2.87
81 82 7.181125 ACAACTGACCAGGATAACTCTTATCTT 59.819 37.037 0.00 0.00 41.37 2.40
82 83 6.670027 ACAACTGACCAGGATAACTCTTATCT 59.330 38.462 0.00 0.00 41.37 1.98
83 84 6.879400 ACAACTGACCAGGATAACTCTTATC 58.121 40.000 0.00 0.00 41.00 1.75
84 85 6.875972 ACAACTGACCAGGATAACTCTTAT 57.124 37.500 0.00 0.00 0.00 1.73
85 86 6.295688 GGAACAACTGACCAGGATAACTCTTA 60.296 42.308 0.00 0.00 0.00 2.10
86 87 5.513267 GGAACAACTGACCAGGATAACTCTT 60.513 44.000 0.00 0.00 0.00 2.85
87 88 4.020128 GGAACAACTGACCAGGATAACTCT 60.020 45.833 0.00 0.00 0.00 3.24
88 89 4.020128 AGGAACAACTGACCAGGATAACTC 60.020 45.833 0.00 0.00 0.00 3.01
89 90 3.910627 AGGAACAACTGACCAGGATAACT 59.089 43.478 0.00 0.00 0.00 2.24
90 91 4.003648 CAGGAACAACTGACCAGGATAAC 58.996 47.826 0.00 0.00 40.97 1.89
91 92 3.650942 ACAGGAACAACTGACCAGGATAA 59.349 43.478 0.00 0.00 40.97 1.75
92 93 3.007940 CACAGGAACAACTGACCAGGATA 59.992 47.826 0.00 0.00 40.97 2.59
93 94 2.057922 ACAGGAACAACTGACCAGGAT 58.942 47.619 0.00 0.00 40.97 3.24
94 95 1.140852 CACAGGAACAACTGACCAGGA 59.859 52.381 0.00 0.00 40.97 3.86
95 96 1.597742 CACAGGAACAACTGACCAGG 58.402 55.000 0.00 0.00 40.97 4.45
96 97 1.597742 CCACAGGAACAACTGACCAG 58.402 55.000 0.00 0.00 40.97 4.00
97 98 0.182537 CCCACAGGAACAACTGACCA 59.817 55.000 0.00 0.00 40.97 4.02
98 99 0.472471 TCCCACAGGAACAACTGACC 59.528 55.000 0.00 0.00 40.08 4.02
108 109 0.038166 GCACTCCATTTCCCACAGGA 59.962 55.000 0.00 0.00 41.88 3.86
109 110 0.967380 GGCACTCCATTTCCCACAGG 60.967 60.000 0.00 0.00 0.00 4.00
110 111 0.251297 TGGCACTCCATTTCCCACAG 60.251 55.000 0.00 0.00 37.47 3.66
111 112 1.849832 TGGCACTCCATTTCCCACA 59.150 52.632 0.00 0.00 37.47 4.17
112 113 4.841441 TGGCACTCCATTTCCCAC 57.159 55.556 0.00 0.00 37.47 4.61
120 121 1.937191 TCAGTGTCTATGGCACTCCA 58.063 50.000 1.51 0.00 44.43 3.86
121 122 2.432146 TCATCAGTGTCTATGGCACTCC 59.568 50.000 1.51 0.00 44.43 3.85
122 123 3.808466 TCATCAGTGTCTATGGCACTC 57.192 47.619 1.51 0.00 44.43 3.51
123 124 3.369892 GGTTCATCAGTGTCTATGGCACT 60.370 47.826 0.00 0.00 46.86 4.40
124 125 2.939103 GGTTCATCAGTGTCTATGGCAC 59.061 50.000 0.00 0.00 37.13 5.01
125 126 2.571202 TGGTTCATCAGTGTCTATGGCA 59.429 45.455 0.00 0.00 0.00 4.92
126 127 2.939103 GTGGTTCATCAGTGTCTATGGC 59.061 50.000 0.00 0.00 0.00 4.40
127 128 4.206477 TGTGGTTCATCAGTGTCTATGG 57.794 45.455 0.00 0.00 0.00 2.74
128 129 5.106555 GGTTTGTGGTTCATCAGTGTCTATG 60.107 44.000 0.00 0.00 0.00 2.23
129 130 5.003804 GGTTTGTGGTTCATCAGTGTCTAT 58.996 41.667 0.00 0.00 0.00 1.98
130 131 4.385825 GGTTTGTGGTTCATCAGTGTCTA 58.614 43.478 0.00 0.00 0.00 2.59
131 132 3.214328 GGTTTGTGGTTCATCAGTGTCT 58.786 45.455 0.00 0.00 0.00 3.41
132 133 2.032030 CGGTTTGTGGTTCATCAGTGTC 60.032 50.000 0.00 0.00 0.00 3.67
133 134 1.946768 CGGTTTGTGGTTCATCAGTGT 59.053 47.619 0.00 0.00 0.00 3.55
134 135 1.334960 GCGGTTTGTGGTTCATCAGTG 60.335 52.381 0.00 0.00 0.00 3.66
135 136 0.951558 GCGGTTTGTGGTTCATCAGT 59.048 50.000 0.00 0.00 0.00 3.41
136 137 1.238439 AGCGGTTTGTGGTTCATCAG 58.762 50.000 0.00 0.00 0.00 2.90
137 138 1.606668 GAAGCGGTTTGTGGTTCATCA 59.393 47.619 0.00 0.00 42.01 3.07
138 139 1.068541 GGAAGCGGTTTGTGGTTCATC 60.069 52.381 0.00 0.00 43.69 2.92
139 140 0.958822 GGAAGCGGTTTGTGGTTCAT 59.041 50.000 0.00 0.00 43.69 2.57
140 141 1.440938 CGGAAGCGGTTTGTGGTTCA 61.441 55.000 0.00 0.00 43.69 3.18
141 142 1.281656 CGGAAGCGGTTTGTGGTTC 59.718 57.895 0.00 0.00 41.77 3.62
142 143 3.427670 CGGAAGCGGTTTGTGGTT 58.572 55.556 0.00 0.00 0.00 3.67
154 155 0.531532 CTAGTGGCTGATGGCGGAAG 60.532 60.000 0.00 0.00 42.94 3.46
155 156 0.975556 TCTAGTGGCTGATGGCGGAA 60.976 55.000 0.00 0.00 42.94 4.30
156 157 0.975556 TTCTAGTGGCTGATGGCGGA 60.976 55.000 0.00 0.00 42.94 5.54
157 158 0.107703 TTTCTAGTGGCTGATGGCGG 60.108 55.000 0.00 0.00 42.94 6.13
158 159 1.600957 CATTTCTAGTGGCTGATGGCG 59.399 52.381 0.00 0.00 42.94 5.69
159 160 2.648059 ACATTTCTAGTGGCTGATGGC 58.352 47.619 0.00 0.00 40.90 4.40
160 161 4.012374 ACAACATTTCTAGTGGCTGATGG 58.988 43.478 0.00 0.00 0.00 3.51
161 162 4.456911 ACACAACATTTCTAGTGGCTGATG 59.543 41.667 0.00 0.00 36.35 3.07
162 163 4.655963 ACACAACATTTCTAGTGGCTGAT 58.344 39.130 0.00 0.00 36.35 2.90
163 164 4.085357 ACACAACATTTCTAGTGGCTGA 57.915 40.909 0.00 0.00 36.35 4.26
164 165 4.036734 ACAACACAACATTTCTAGTGGCTG 59.963 41.667 0.00 0.00 36.35 4.85
165 166 4.207165 ACAACACAACATTTCTAGTGGCT 58.793 39.130 0.00 0.00 36.35 4.75
166 167 4.568152 ACAACACAACATTTCTAGTGGC 57.432 40.909 0.00 0.00 36.35 5.01
167 168 6.481976 TGAGTACAACACAACATTTCTAGTGG 59.518 38.462 0.00 0.00 36.35 4.00
168 169 7.011016 TGTGAGTACAACACAACATTTCTAGTG 59.989 37.037 18.71 0.00 43.73 2.74
169 170 7.045416 TGTGAGTACAACACAACATTTCTAGT 58.955 34.615 18.71 0.00 43.73 2.57
170 171 7.307396 CCTGTGAGTACAACACAACATTTCTAG 60.307 40.741 20.44 9.98 45.49 2.43
171 172 6.481976 CCTGTGAGTACAACACAACATTTCTA 59.518 38.462 20.44 2.43 45.49 2.10
172 173 5.296780 CCTGTGAGTACAACACAACATTTCT 59.703 40.000 20.44 0.00 45.49 2.52
173 174 5.510671 CCTGTGAGTACAACACAACATTTC 58.489 41.667 20.44 0.00 45.49 2.17
174 175 4.202010 GCCTGTGAGTACAACACAACATTT 60.202 41.667 20.44 0.00 45.49 2.32
175 176 3.315191 GCCTGTGAGTACAACACAACATT 59.685 43.478 20.44 0.00 45.49 2.71
176 177 2.878406 GCCTGTGAGTACAACACAACAT 59.122 45.455 20.44 0.00 45.49 2.71
177 178 2.285083 GCCTGTGAGTACAACACAACA 58.715 47.619 20.44 5.24 45.49 3.33
178 179 1.602377 GGCCTGTGAGTACAACACAAC 59.398 52.381 20.44 16.37 45.49 3.32
179 180 1.210722 TGGCCTGTGAGTACAACACAA 59.789 47.619 20.44 8.49 45.49 3.33
180 181 0.833949 TGGCCTGTGAGTACAACACA 59.166 50.000 19.43 19.43 44.34 3.72
181 182 1.070134 TCTGGCCTGTGAGTACAACAC 59.930 52.381 3.32 13.72 36.14 3.32
182 183 1.419381 TCTGGCCTGTGAGTACAACA 58.581 50.000 3.32 0.00 36.14 3.33
183 184 2.543777 TTCTGGCCTGTGAGTACAAC 57.456 50.000 3.32 0.00 36.14 3.32
184 185 2.290260 CCATTCTGGCCTGTGAGTACAA 60.290 50.000 3.32 0.00 36.14 2.41
185 186 1.278985 CCATTCTGGCCTGTGAGTACA 59.721 52.381 3.32 0.00 35.08 2.90
186 187 1.279271 ACCATTCTGGCCTGTGAGTAC 59.721 52.381 3.32 0.00 42.67 2.73
187 188 1.555075 GACCATTCTGGCCTGTGAGTA 59.445 52.381 3.32 0.00 42.67 2.59
188 189 0.326264 GACCATTCTGGCCTGTGAGT 59.674 55.000 3.32 0.54 42.67 3.41
189 190 0.617413 AGACCATTCTGGCCTGTGAG 59.383 55.000 3.32 0.00 42.67 3.51
190 191 1.067295 AAGACCATTCTGGCCTGTGA 58.933 50.000 3.32 0.00 42.67 3.58
191 192 1.171308 CAAGACCATTCTGGCCTGTG 58.829 55.000 3.32 0.00 42.67 3.66
192 193 0.773644 ACAAGACCATTCTGGCCTGT 59.226 50.000 3.32 0.00 42.67 4.00
193 194 2.026822 AGTACAAGACCATTCTGGCCTG 60.027 50.000 3.32 2.92 42.67 4.85
194 195 2.269940 AGTACAAGACCATTCTGGCCT 58.730 47.619 3.32 0.00 42.67 5.19
195 196 2.789409 AGTACAAGACCATTCTGGCC 57.211 50.000 0.00 0.00 42.67 5.36
196 197 4.202245 TGTAGTACAAGACCATTCTGGC 57.798 45.455 0.00 0.00 42.67 4.85
197 198 8.964476 AAATATGTAGTACAAGACCATTCTGG 57.036 34.615 7.16 0.00 45.02 3.86
199 200 9.959721 ACAAAATATGTAGTACAAGACCATTCT 57.040 29.630 7.16 0.00 41.63 2.40
219 220 9.341078 ACAGAAATTCCAAGCAAAATACAAAAT 57.659 25.926 0.00 0.00 0.00 1.82
220 221 8.729805 ACAGAAATTCCAAGCAAAATACAAAA 57.270 26.923 0.00 0.00 0.00 2.44
221 222 9.995003 ATACAGAAATTCCAAGCAAAATACAAA 57.005 25.926 0.00 0.00 0.00 2.83
222 223 9.638239 GATACAGAAATTCCAAGCAAAATACAA 57.362 29.630 0.00 0.00 0.00 2.41
223 224 8.801299 TGATACAGAAATTCCAAGCAAAATACA 58.199 29.630 0.00 0.00 0.00 2.29
224 225 9.638239 TTGATACAGAAATTCCAAGCAAAATAC 57.362 29.630 0.00 0.00 0.00 1.89
225 226 9.859427 CTTGATACAGAAATTCCAAGCAAAATA 57.141 29.630 0.00 0.00 0.00 1.40
226 227 8.370182 ACTTGATACAGAAATTCCAAGCAAAAT 58.630 29.630 8.24 0.00 35.67 1.82
227 228 7.725251 ACTTGATACAGAAATTCCAAGCAAAA 58.275 30.769 8.24 0.00 35.67 2.44
228 229 7.288810 ACTTGATACAGAAATTCCAAGCAAA 57.711 32.000 8.24 0.00 35.67 3.68
229 230 6.899393 ACTTGATACAGAAATTCCAAGCAA 57.101 33.333 8.24 1.27 35.67 3.91
230 231 6.294675 CCAACTTGATACAGAAATTCCAAGCA 60.295 38.462 8.24 0.00 35.67 3.91
231 232 6.095377 CCAACTTGATACAGAAATTCCAAGC 58.905 40.000 8.24 0.00 35.67 4.01
232 233 7.086376 CACCAACTTGATACAGAAATTCCAAG 58.914 38.462 7.18 7.18 37.57 3.61
233 234 6.516527 GCACCAACTTGATACAGAAATTCCAA 60.517 38.462 0.00 0.00 0.00 3.53
234 235 5.048083 GCACCAACTTGATACAGAAATTCCA 60.048 40.000 0.00 0.00 0.00 3.53
235 236 5.402398 GCACCAACTTGATACAGAAATTCC 58.598 41.667 0.00 0.00 0.00 3.01
236 237 5.183904 AGGCACCAACTTGATACAGAAATTC 59.816 40.000 0.00 0.00 0.00 2.17
237 238 5.079643 AGGCACCAACTTGATACAGAAATT 58.920 37.500 0.00 0.00 0.00 1.82
238 239 4.666512 AGGCACCAACTTGATACAGAAAT 58.333 39.130 0.00 0.00 0.00 2.17
239 240 4.072131 GAGGCACCAACTTGATACAGAAA 58.928 43.478 0.00 0.00 0.00 2.52
240 241 3.072330 TGAGGCACCAACTTGATACAGAA 59.928 43.478 0.00 0.00 0.00 3.02
241 242 2.637382 TGAGGCACCAACTTGATACAGA 59.363 45.455 0.00 0.00 0.00 3.41
242 243 3.057969 TGAGGCACCAACTTGATACAG 57.942 47.619 0.00 0.00 0.00 2.74
243 244 3.008923 TGATGAGGCACCAACTTGATACA 59.991 43.478 0.00 0.00 0.00 2.29
244 245 3.609853 TGATGAGGCACCAACTTGATAC 58.390 45.455 0.00 0.00 0.00 2.24
245 246 3.877559 CTGATGAGGCACCAACTTGATA 58.122 45.455 0.00 0.00 0.00 2.15
246 247 2.719739 CTGATGAGGCACCAACTTGAT 58.280 47.619 0.00 0.00 0.00 2.57
247 248 1.883638 GCTGATGAGGCACCAACTTGA 60.884 52.381 0.00 0.00 0.00 3.02
248 249 0.524862 GCTGATGAGGCACCAACTTG 59.475 55.000 0.00 0.00 0.00 3.16
249 250 0.403271 AGCTGATGAGGCACCAACTT 59.597 50.000 0.00 0.00 0.00 2.66
250 251 1.279496 TAGCTGATGAGGCACCAACT 58.721 50.000 0.00 0.00 0.00 3.16
251 252 1.740025 GTTAGCTGATGAGGCACCAAC 59.260 52.381 0.00 0.00 0.00 3.77
252 253 1.350684 TGTTAGCTGATGAGGCACCAA 59.649 47.619 0.00 0.00 0.00 3.67
253 254 0.983467 TGTTAGCTGATGAGGCACCA 59.017 50.000 0.00 0.00 0.00 4.17
254 255 1.065854 ACTGTTAGCTGATGAGGCACC 60.066 52.381 0.00 0.00 0.00 5.01
255 256 2.393271 ACTGTTAGCTGATGAGGCAC 57.607 50.000 0.00 0.00 0.00 5.01
256 257 4.443457 GGATTACTGTTAGCTGATGAGGCA 60.443 45.833 0.00 0.00 0.00 4.75
257 258 4.061596 GGATTACTGTTAGCTGATGAGGC 58.938 47.826 0.00 0.00 0.00 4.70
258 259 5.295950 CAGGATTACTGTTAGCTGATGAGG 58.704 45.833 0.00 0.00 42.42 3.86
259 260 5.295950 CCAGGATTACTGTTAGCTGATGAG 58.704 45.833 0.00 0.00 46.06 2.90
260 261 4.101585 CCCAGGATTACTGTTAGCTGATGA 59.898 45.833 0.00 0.00 46.06 2.92
261 262 4.384056 CCCAGGATTACTGTTAGCTGATG 58.616 47.826 0.00 0.00 46.06 3.07
262 263 3.392616 CCCCAGGATTACTGTTAGCTGAT 59.607 47.826 0.00 0.00 46.06 2.90
263 264 2.771943 CCCCAGGATTACTGTTAGCTGA 59.228 50.000 0.00 0.00 46.06 4.26
264 265 2.746472 GCCCCAGGATTACTGTTAGCTG 60.746 54.545 0.00 0.00 46.06 4.24
265 266 1.490910 GCCCCAGGATTACTGTTAGCT 59.509 52.381 0.00 0.00 46.06 3.32
266 267 1.490910 AGCCCCAGGATTACTGTTAGC 59.509 52.381 0.00 0.00 46.06 3.09
267 268 2.158755 CCAGCCCCAGGATTACTGTTAG 60.159 54.545 0.00 0.00 46.06 2.34
268 269 1.843851 CCAGCCCCAGGATTACTGTTA 59.156 52.381 0.00 0.00 46.06 2.41
269 270 0.625849 CCAGCCCCAGGATTACTGTT 59.374 55.000 0.00 0.00 46.06 3.16
270 271 0.550147 ACCAGCCCCAGGATTACTGT 60.550 55.000 0.00 0.00 46.06 3.55
272 273 0.253160 TCACCAGCCCCAGGATTACT 60.253 55.000 0.00 0.00 0.00 2.24
273 274 0.181350 CTCACCAGCCCCAGGATTAC 59.819 60.000 0.00 0.00 0.00 1.89
274 275 1.635817 GCTCACCAGCCCCAGGATTA 61.636 60.000 0.00 0.00 40.14 1.75
275 276 2.988839 GCTCACCAGCCCCAGGATT 61.989 63.158 0.00 0.00 40.14 3.01
276 277 3.415087 GCTCACCAGCCCCAGGAT 61.415 66.667 0.00 0.00 40.14 3.24
277 278 4.980592 TGCTCACCAGCCCCAGGA 62.981 66.667 0.00 0.00 46.26 3.86
278 279 4.729918 GTGCTCACCAGCCCCAGG 62.730 72.222 0.00 0.00 46.26 4.45
279 280 3.496309 TTGTGCTCACCAGCCCCAG 62.496 63.158 0.00 0.00 46.26 4.45
280 281 3.496309 CTTGTGCTCACCAGCCCCA 62.496 63.158 0.00 0.00 46.26 4.96
281 282 2.674380 CTTGTGCTCACCAGCCCC 60.674 66.667 0.00 0.00 46.26 5.80
282 283 2.674380 CCTTGTGCTCACCAGCCC 60.674 66.667 0.00 0.00 46.26 5.19
283 284 2.674380 CCCTTGTGCTCACCAGCC 60.674 66.667 0.00 0.00 46.26 4.85
285 286 2.674380 GGCCCTTGTGCTCACCAG 60.674 66.667 0.00 0.00 0.00 4.00
286 287 2.370459 AATGGCCCTTGTGCTCACCA 62.370 55.000 0.00 0.00 0.00 4.17
287 288 1.187567 AAATGGCCCTTGTGCTCACC 61.188 55.000 0.00 0.00 0.00 4.02
288 289 0.681175 AAAATGGCCCTTGTGCTCAC 59.319 50.000 0.00 0.00 0.00 3.51
289 290 0.968405 GAAAATGGCCCTTGTGCTCA 59.032 50.000 0.00 0.00 0.00 4.26
290 291 1.067354 CAGAAAATGGCCCTTGTGCTC 60.067 52.381 0.00 0.00 0.00 4.26
291 292 0.971386 CAGAAAATGGCCCTTGTGCT 59.029 50.000 0.00 0.00 0.00 4.40
292 293 0.037046 CCAGAAAATGGCCCTTGTGC 60.037 55.000 0.00 0.00 43.83 4.57
302 303 8.662781 TCGAGATATTAGTTTCCCAGAAAATG 57.337 34.615 0.63 0.00 0.00 2.32
303 304 9.681062 TTTCGAGATATTAGTTTCCCAGAAAAT 57.319 29.630 0.00 0.00 0.00 1.82
304 305 9.509956 TTTTCGAGATATTAGTTTCCCAGAAAA 57.490 29.630 0.00 0.00 32.56 2.29
305 306 9.681062 ATTTTCGAGATATTAGTTTCCCAGAAA 57.319 29.630 0.00 0.00 0.00 2.52
306 307 9.326413 GATTTTCGAGATATTAGTTTCCCAGAA 57.674 33.333 0.00 0.00 0.00 3.02
307 308 7.931948 GGATTTTCGAGATATTAGTTTCCCAGA 59.068 37.037 0.00 0.00 0.00 3.86
308 309 7.095607 CGGATTTTCGAGATATTAGTTTCCCAG 60.096 40.741 0.00 0.00 0.00 4.45
309 310 6.704493 CGGATTTTCGAGATATTAGTTTCCCA 59.296 38.462 0.00 0.00 0.00 4.37
310 311 6.147328 CCGGATTTTCGAGATATTAGTTTCCC 59.853 42.308 0.00 0.00 0.00 3.97
311 312 6.704937 ACCGGATTTTCGAGATATTAGTTTCC 59.295 38.462 9.46 0.00 0.00 3.13
312 313 7.095732 GGACCGGATTTTCGAGATATTAGTTTC 60.096 40.741 9.46 0.00 0.00 2.78
313 314 6.704937 GGACCGGATTTTCGAGATATTAGTTT 59.295 38.462 9.46 0.00 0.00 2.66
314 315 6.041751 AGGACCGGATTTTCGAGATATTAGTT 59.958 38.462 9.46 0.00 0.00 2.24
315 316 5.539193 AGGACCGGATTTTCGAGATATTAGT 59.461 40.000 9.46 0.00 0.00 2.24
316 317 5.864474 CAGGACCGGATTTTCGAGATATTAG 59.136 44.000 9.46 0.00 0.00 1.73
317 318 5.537295 TCAGGACCGGATTTTCGAGATATTA 59.463 40.000 9.46 0.00 0.00 0.98
318 319 4.344102 TCAGGACCGGATTTTCGAGATATT 59.656 41.667 9.46 0.00 0.00 1.28
319 320 3.895656 TCAGGACCGGATTTTCGAGATAT 59.104 43.478 9.46 0.00 0.00 1.63
320 321 3.067742 GTCAGGACCGGATTTTCGAGATA 59.932 47.826 9.46 0.00 0.00 1.98
321 322 2.108168 TCAGGACCGGATTTTCGAGAT 58.892 47.619 9.46 0.00 0.00 2.75
322 323 1.203994 GTCAGGACCGGATTTTCGAGA 59.796 52.381 9.46 0.00 0.00 4.04
323 324 1.067142 TGTCAGGACCGGATTTTCGAG 60.067 52.381 9.46 0.00 0.00 4.04
324 325 0.970640 TGTCAGGACCGGATTTTCGA 59.029 50.000 9.46 0.00 0.00 3.71
325 326 1.803334 TTGTCAGGACCGGATTTTCG 58.197 50.000 9.46 0.00 0.00 3.46
326 327 5.588648 TCATTATTGTCAGGACCGGATTTTC 59.411 40.000 9.46 0.00 0.00 2.29
327 328 5.505780 TCATTATTGTCAGGACCGGATTTT 58.494 37.500 9.46 0.00 0.00 1.82
328 329 5.110814 TCATTATTGTCAGGACCGGATTT 57.889 39.130 9.46 0.00 0.00 2.17
329 330 4.771114 TCATTATTGTCAGGACCGGATT 57.229 40.909 9.46 0.00 0.00 3.01
330 331 4.771114 TTCATTATTGTCAGGACCGGAT 57.229 40.909 9.46 0.00 0.00 4.18
331 332 4.561500 TTTCATTATTGTCAGGACCGGA 57.438 40.909 9.46 0.00 0.00 5.14
332 333 4.498009 GCATTTCATTATTGTCAGGACCGG 60.498 45.833 0.00 0.00 0.00 5.28
333 334 4.096231 TGCATTTCATTATTGTCAGGACCG 59.904 41.667 0.00 0.00 0.00 4.79
334 335 5.343249 GTGCATTTCATTATTGTCAGGACC 58.657 41.667 0.00 0.00 0.00 4.46
335 336 5.343249 GGTGCATTTCATTATTGTCAGGAC 58.657 41.667 0.00 0.00 0.00 3.85
336 337 4.402155 GGGTGCATTTCATTATTGTCAGGA 59.598 41.667 0.00 0.00 0.00 3.86
337 338 4.441913 GGGGTGCATTTCATTATTGTCAGG 60.442 45.833 0.00 0.00 0.00 3.86
338 339 4.441913 GGGGGTGCATTTCATTATTGTCAG 60.442 45.833 0.00 0.00 0.00 3.51
339 340 3.450457 GGGGGTGCATTTCATTATTGTCA 59.550 43.478 0.00 0.00 0.00 3.58
340 341 4.058721 GGGGGTGCATTTCATTATTGTC 57.941 45.455 0.00 0.00 0.00 3.18
822 838 8.914011 CATGGAATATCCTGTAGGTATCGATTA 58.086 37.037 1.71 0.00 37.46 1.75
883 1894 6.459161 GGTGTGTTTCCGTTTTACAATTCTCT 60.459 38.462 0.00 0.00 0.00 3.10
885 1896 5.125739 TGGTGTGTTTCCGTTTTACAATTCT 59.874 36.000 0.00 0.00 0.00 2.40
897 1908 0.030638 CCTGCTTTGGTGTGTTTCCG 59.969 55.000 0.00 0.00 0.00 4.30
906 1917 6.408869 CCATTTTATTCATTCCTGCTTTGGT 58.591 36.000 0.00 0.00 0.00 3.67
960 1971 7.419172 GGTTCCTTCTGCTGTTTATATAGAGGT 60.419 40.741 0.00 0.00 0.00 3.85
1110 2121 4.927425 GCTTCACTCGACAATAAAGTGGTA 59.073 41.667 2.26 0.00 40.60 3.25
1350 2362 9.609346 GATACTTGCCTATTTAACTAAAGACCA 57.391 33.333 0.00 0.00 0.00 4.02
1566 2580 2.298446 TGGAAACCATACGTACCACGAA 59.702 45.455 5.61 0.00 46.05 3.85
1648 2662 7.394816 ACTATGCAAATAGTAGGACAACAGTT 58.605 34.615 0.00 0.00 35.74 3.16
1823 2841 3.987547 ACCATCTCTGTTGCAGATATCG 58.012 45.455 0.00 0.00 39.92 2.92
2324 3347 7.512992 AGAATAGTGAATCTATTTGGTCCCAG 58.487 38.462 2.38 0.00 45.86 4.45
2343 3366 5.003778 GCGCTTATTTTGTGTGCAAGAATAG 59.996 40.000 0.00 0.00 37.20 1.73
2345 3368 3.674753 GCGCTTATTTTGTGTGCAAGAAT 59.325 39.130 0.00 0.00 37.20 2.40
2396 3419 3.066621 CACTGCAGCTTGTTAGTTTCCAA 59.933 43.478 15.27 0.00 0.00 3.53
2417 3440 4.469657 AGATAGCCAGGAACAAAAACACA 58.530 39.130 0.00 0.00 0.00 3.72
2420 3443 5.007682 TGGTAGATAGCCAGGAACAAAAAC 58.992 41.667 0.00 0.00 0.00 2.43
2522 3545 2.094390 GTCCATACACCACTTAGCGACA 60.094 50.000 0.00 0.00 0.00 4.35
2544 3567 8.472007 ACACCAGAAGTAAAATTTACATCCAA 57.528 30.769 17.00 0.00 0.00 3.53
2645 3668 7.069455 AGAGATACTTTCCTTTTCTCTAGAGGC 59.931 40.741 19.67 0.00 40.92 4.70
2747 3770 2.622942 ACACGCAAGAAAATGTCATGGT 59.377 40.909 0.00 0.00 43.62 3.55
2877 3901 2.891580 ACGAGAACTAGAAGGTGCAAGA 59.108 45.455 0.00 0.00 0.00 3.02
2878 3902 3.305398 ACGAGAACTAGAAGGTGCAAG 57.695 47.619 0.00 0.00 0.00 4.01
2889 3913 3.509967 TCCTGCTCATGAAACGAGAACTA 59.490 43.478 0.00 0.00 31.84 2.24
2908 3932 4.335416 CATGCCGGGAATGTTTATATCCT 58.665 43.478 6.86 0.00 33.61 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.