Multiple sequence alignment - TraesCS1A01G236900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G236900 chr1A 100.000 4694 0 0 1 4694 420064208 420068901 0.000000e+00 8669
1 TraesCS1A01G236900 chr1A 77.436 585 110 16 4118 4691 76471247 76471820 3.500000e-86 329
2 TraesCS1A01G236900 chr1A 77.226 584 100 29 4109 4675 375093097 375092530 1.270000e-80 311
3 TraesCS1A01G236900 chr1A 79.167 456 76 13 4118 4562 76450352 76450799 9.870000e-77 298
4 TraesCS1A01G236900 chr1A 84.848 132 13 7 4109 4236 179039237 179039109 4.930000e-25 126
5 TraesCS1A01G236900 chr1D 95.575 4723 158 18 1 4694 324703216 324698516 0.000000e+00 7516
6 TraesCS1A01G236900 chr1D 76.386 559 107 19 4142 4688 75651615 75652160 1.290000e-70 278
7 TraesCS1A01G236900 chr1D 76.375 491 88 24 4109 4589 300711815 300711343 6.070000e-59 239
8 TraesCS1A01G236900 chr1B 95.782 4101 127 18 4 4090 437188276 437184208 0.000000e+00 6573
9 TraesCS1A01G236900 chr1B 85.409 514 59 4 4195 4694 437184104 437183593 1.940000e-143 520
10 TraesCS1A01G236900 chr1B 75.966 595 116 22 4110 4688 405900438 405899855 9.940000e-72 281
11 TraesCS1A01G236900 chr2D 79.851 536 90 13 4109 4632 593876873 593876344 4.430000e-100 375
12 TraesCS1A01G236900 chr2D 74.793 484 87 28 4220 4688 12363841 12363378 8.020000e-43 185
13 TraesCS1A01G236900 chr7A 79.216 255 41 8 4307 4553 613031934 613032184 2.910000e-37 167
14 TraesCS1A01G236900 chr7A 78.182 275 27 24 4119 4372 206082726 206082988 1.360000e-30 145
15 TraesCS1A01G236900 chr7A 84.848 132 13 7 4109 4236 252798754 252798626 4.930000e-25 126
16 TraesCS1A01G236900 chr3B 80.513 195 28 6 4109 4296 368089070 368089261 1.760000e-29 141
17 TraesCS1A01G236900 chr3A 80.952 189 26 6 4115 4296 368683179 368682994 1.760000e-29 141
18 TraesCS1A01G236900 chr4A 85.075 134 9 10 4109 4236 579884876 579884748 4.930000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G236900 chr1A 420064208 420068901 4693 False 8669.0 8669 100.0000 1 4694 1 chr1A.!!$F3 4693
1 TraesCS1A01G236900 chr1A 76471247 76471820 573 False 329.0 329 77.4360 4118 4691 1 chr1A.!!$F2 573
2 TraesCS1A01G236900 chr1A 375092530 375093097 567 True 311.0 311 77.2260 4109 4675 1 chr1A.!!$R2 566
3 TraesCS1A01G236900 chr1D 324698516 324703216 4700 True 7516.0 7516 95.5750 1 4694 1 chr1D.!!$R2 4693
4 TraesCS1A01G236900 chr1D 75651615 75652160 545 False 278.0 278 76.3860 4142 4688 1 chr1D.!!$F1 546
5 TraesCS1A01G236900 chr1B 437183593 437188276 4683 True 3546.5 6573 90.5955 4 4694 2 chr1B.!!$R2 4690
6 TraesCS1A01G236900 chr1B 405899855 405900438 583 True 281.0 281 75.9660 4110 4688 1 chr1B.!!$R1 578
7 TraesCS1A01G236900 chr2D 593876344 593876873 529 True 375.0 375 79.8510 4109 4632 1 chr2D.!!$R2 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 952 0.244994 CTGCTGCTTACTCCGACACT 59.755 55.000 0.00 0.0 0.00 3.55 F
1578 1604 0.183492 TACCTCCATTCTGCCATGCC 59.817 55.000 0.00 0.0 0.00 4.40 F
2599 2627 1.512771 CGAAAAGCTTGTGCACGAAAC 59.487 47.619 13.13 5.5 42.74 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 2191 1.795768 TGAACTCAAGCCGTGTCATC 58.204 50.000 0.0 0.0 0.00 2.92 R
2650 2678 4.520111 TCATCCCACAAATGAAAGACACAG 59.480 41.667 0.0 0.0 30.37 3.66 R
4327 4454 0.929244 AAATCACCAGGGCATAGGCT 59.071 50.000 0.0 0.0 40.87 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 67 2.244695 CATGGCCAGGTATACTCGGTA 58.755 52.381 13.05 0.00 0.00 4.02
69 71 3.712733 TGGCCAGGTATACTCGGTAAAAT 59.287 43.478 0.00 0.00 0.00 1.82
70 72 4.202284 TGGCCAGGTATACTCGGTAAAATC 60.202 45.833 0.00 0.00 0.00 2.17
71 73 4.040095 GGCCAGGTATACTCGGTAAAATCT 59.960 45.833 0.00 0.00 0.00 2.40
73 75 5.695363 GCCAGGTATACTCGGTAAAATCTTC 59.305 44.000 2.25 0.00 0.00 2.87
74 76 6.462628 GCCAGGTATACTCGGTAAAATCTTCT 60.463 42.308 2.25 0.00 0.00 2.85
104 109 6.455360 AGGTATACTCGGTGAAAACGATTA 57.545 37.500 2.25 0.00 39.89 1.75
139 144 1.078567 GAGCAAGCAGACTCCCCTG 60.079 63.158 0.00 0.00 37.23 4.45
152 157 1.004745 CTCCCCTGCTTTCCTTGCTTA 59.995 52.381 0.00 0.00 0.00 3.09
153 158 1.177401 CCCCTGCTTTCCTTGCTTAC 58.823 55.000 0.00 0.00 0.00 2.34
154 159 0.804989 CCCTGCTTTCCTTGCTTACG 59.195 55.000 0.00 0.00 0.00 3.18
155 160 0.804989 CCTGCTTTCCTTGCTTACGG 59.195 55.000 0.00 0.00 0.00 4.02
156 161 1.610624 CCTGCTTTCCTTGCTTACGGA 60.611 52.381 0.00 0.00 0.00 4.69
157 162 1.734465 CTGCTTTCCTTGCTTACGGAG 59.266 52.381 0.00 0.00 0.00 4.63
185 190 1.826487 GGAACCAACCACCGCACTT 60.826 57.895 0.00 0.00 0.00 3.16
255 260 2.125753 CAGCTCGCTCTCCGCTTT 60.126 61.111 0.00 0.00 36.73 3.51
290 295 2.428960 ATCAGCACCACGTACGCACA 62.429 55.000 16.72 0.00 0.00 4.57
352 357 1.001406 AGCAGAGGACGGTGAAAGAAG 59.999 52.381 0.00 0.00 0.00 2.85
353 358 1.941668 GCAGAGGACGGTGAAAGAAGG 60.942 57.143 0.00 0.00 0.00 3.46
354 359 1.618837 CAGAGGACGGTGAAAGAAGGA 59.381 52.381 0.00 0.00 0.00 3.36
355 360 1.619332 AGAGGACGGTGAAAGAAGGAC 59.381 52.381 0.00 0.00 0.00 3.85
356 361 0.317479 AGGACGGTGAAAGAAGGACG 59.683 55.000 0.00 0.00 0.00 4.79
357 362 0.316204 GGACGGTGAAAGAAGGACGA 59.684 55.000 0.00 0.00 0.00 4.20
358 363 1.269936 GGACGGTGAAAGAAGGACGAA 60.270 52.381 0.00 0.00 0.00 3.85
359 364 2.476821 GACGGTGAAAGAAGGACGAAA 58.523 47.619 0.00 0.00 0.00 3.46
360 365 2.475487 GACGGTGAAAGAAGGACGAAAG 59.525 50.000 0.00 0.00 0.00 2.62
361 366 2.101917 ACGGTGAAAGAAGGACGAAAGA 59.898 45.455 0.00 0.00 0.00 2.52
362 367 3.128349 CGGTGAAAGAAGGACGAAAGAA 58.872 45.455 0.00 0.00 0.00 2.52
370 375 4.246458 AGAAGGACGAAAGAAAGATTCCG 58.754 43.478 0.00 0.00 0.00 4.30
391 396 1.083242 CGCAGCAAGCTTCTCTCTCC 61.083 60.000 0.00 0.00 42.61 3.71
404 409 1.688735 CTCTCTCCACACCAGAACACA 59.311 52.381 0.00 0.00 0.00 3.72
642 647 0.250081 GCAGCTAGCACCCTATCCAC 60.250 60.000 18.83 0.00 44.79 4.02
777 782 2.941616 GCCCAATTGAGGCGCCAAA 61.942 57.895 31.54 22.88 41.41 3.28
798 803 1.957177 TCGGAGAAAGATATCGCTGCT 59.043 47.619 0.00 1.85 0.00 4.24
860 873 1.002087 GGTAGGTGAGGACCAGTGTTG 59.998 57.143 0.00 0.00 45.98 3.33
939 952 0.244994 CTGCTGCTTACTCCGACACT 59.755 55.000 0.00 0.00 0.00 3.55
943 956 0.815734 TGCTTACTCCGACACTAGGC 59.184 55.000 0.00 0.00 0.00 3.93
952 965 1.275291 CCGACACTAGGCAGGAAAAGA 59.725 52.381 0.00 0.00 0.00 2.52
953 966 2.289444 CCGACACTAGGCAGGAAAAGAA 60.289 50.000 0.00 0.00 0.00 2.52
1009 1022 0.466189 GGGCATCCGGATGTCATTGT 60.466 55.000 41.21 7.81 44.79 2.71
1020 1033 1.878522 GTCATTGTCGATCGCCGCT 60.879 57.895 11.09 0.00 38.37 5.52
1025 1038 0.386858 TTGTCGATCGCCGCTATAGC 60.387 55.000 15.09 15.09 38.37 2.97
1190 1203 1.078497 GTGCACCGTCCATGGATGA 60.078 57.895 31.81 11.91 33.22 2.92
1309 1335 4.735132 CGAAGTTCCTCGGCGCCA 62.735 66.667 28.98 12.94 35.14 5.69
1532 1558 2.758497 GCAAATGCAGGGACATTGC 58.242 52.632 0.00 0.00 40.12 3.56
1578 1604 0.183492 TACCTCCATTCTGCCATGCC 59.817 55.000 0.00 0.00 0.00 4.40
1680 1706 2.814269 TCTATGCGATGCTGACTTGAC 58.186 47.619 0.00 0.00 0.00 3.18
1822 1848 6.045955 GGAAGATCTGTCTCTTGTCCATTAC 58.954 44.000 0.00 0.00 35.63 1.89
2100 2126 8.833231 ATATGTGGTTATCGTCAGAAATTAGG 57.167 34.615 0.00 0.00 0.00 2.69
2113 2139 7.430441 GTCAGAAATTAGGTTGTGGCTTTTTA 58.570 34.615 0.00 0.00 0.00 1.52
2114 2140 7.381408 GTCAGAAATTAGGTTGTGGCTTTTTAC 59.619 37.037 0.00 0.00 0.00 2.01
2163 2191 2.432510 ACTAGATTCAGGGAAAGGCTCG 59.567 50.000 0.00 0.00 0.00 5.03
2241 2269 5.531659 AGGTAGTACAACTATGAGATGTCGG 59.468 44.000 2.06 0.00 33.18 4.79
2244 2272 3.170791 ACAACTATGAGATGTCGGCTG 57.829 47.619 0.00 0.00 0.00 4.85
2423 2451 5.938125 TGATGCTGGACTTTTTAGGTTACTC 59.062 40.000 0.00 0.00 0.00 2.59
2599 2627 1.512771 CGAAAAGCTTGTGCACGAAAC 59.487 47.619 13.13 5.50 42.74 2.78
2650 2678 7.698836 AAATGTCATCTAGTTGTTTTGTTGC 57.301 32.000 0.83 0.00 0.00 4.17
2662 2690 5.070770 TGTTTTGTTGCTGTGTCTTTCAT 57.929 34.783 0.00 0.00 0.00 2.57
2858 2886 3.044894 ACCTCCAGAATCCAGAGAATCC 58.955 50.000 0.00 0.00 33.66 3.01
3070 3107 5.474532 TGGAATCTTTGATTCACTGTTCCAG 59.525 40.000 18.26 0.00 39.00 3.86
3112 3149 4.382345 TGTGTGCACATTGACAAAATGA 57.618 36.364 24.69 0.00 36.21 2.57
3144 3181 2.170166 CCTTGCTAAACCAATGGAGCA 58.830 47.619 6.16 8.32 42.98 4.26
3218 3255 6.748333 TTCACTCCTTTTGCTATGATGAAG 57.252 37.500 0.00 0.00 0.00 3.02
3396 3435 5.555966 TGTGCACCATTTGATTAGACAGTA 58.444 37.500 15.69 0.00 0.00 2.74
3397 3436 5.643348 TGTGCACCATTTGATTAGACAGTAG 59.357 40.000 15.69 0.00 0.00 2.57
3398 3437 5.643777 GTGCACCATTTGATTAGACAGTAGT 59.356 40.000 5.22 0.00 0.00 2.73
3579 3618 1.450312 CAGAAGGCGGCCGAAGATT 60.450 57.895 33.48 16.93 0.00 2.40
3580 3619 1.153349 AGAAGGCGGCCGAAGATTC 60.153 57.895 33.48 24.05 0.00 2.52
3645 3684 5.670792 TGTCTCTAACAACGATTATGGGT 57.329 39.130 0.00 0.00 34.03 4.51
3774 3813 5.297776 GTCCAGCAGCTGTTGTTTATGATAT 59.702 40.000 26.22 0.00 0.00 1.63
3856 3895 8.958119 TCATGGTTGTTATATTCTGTAAGGTC 57.042 34.615 0.00 0.00 0.00 3.85
3927 3966 2.921121 TGTCACTCGACGAATTGTATGC 59.079 45.455 0.00 0.00 45.80 3.14
4052 4091 2.359900 ACTACTGTAATTGCCAGCAGC 58.640 47.619 6.82 0.00 44.14 5.25
4069 4108 3.875727 AGCAGCTGCATTACTCATACAAG 59.124 43.478 38.24 0.00 45.16 3.16
4102 4141 7.749377 TTCCTAATCTTGGTTAGATCCTGAA 57.251 36.000 2.49 0.00 42.90 3.02
4103 4142 7.937700 TCCTAATCTTGGTTAGATCCTGAAT 57.062 36.000 2.49 0.00 42.90 2.57
4107 4146 3.459598 TCTTGGTTAGATCCTGAATGGGG 59.540 47.826 0.00 0.00 36.20 4.96
4109 4148 1.202940 GGTTAGATCCTGAATGGGGCC 60.203 57.143 0.00 0.00 36.20 5.80
4110 4149 1.494721 GTTAGATCCTGAATGGGGCCA 59.505 52.381 4.39 0.00 36.20 5.36
4111 4150 1.140312 TAGATCCTGAATGGGGCCAC 58.860 55.000 4.39 0.00 36.20 5.01
4112 4151 0.920763 AGATCCTGAATGGGGCCACA 60.921 55.000 11.97 11.97 36.20 4.17
4114 4153 0.638292 ATCCTGAATGGGGCCACATT 59.362 50.000 33.43 33.43 43.36 2.71
4133 4172 5.528320 CACATTGTTTCAAGCCTTCCAATTT 59.472 36.000 0.00 0.00 0.00 1.82
4327 4454 1.628846 GACTAAGGGTGGAAGGCTCAA 59.371 52.381 0.00 0.00 0.00 3.02
4377 4506 3.992427 CTGGTCAACCCTAGTTTTCGTAC 59.008 47.826 0.00 0.00 32.45 3.67
4389 4518 6.255887 CCTAGTTTTCGTACTTCTGGCTATTG 59.744 42.308 0.00 0.00 0.00 1.90
4567 4708 2.281761 CAACTTGGGCCAGCGTCT 60.282 61.111 6.23 0.00 0.00 4.18
4635 4780 0.694196 AAACCGGGCTTGGCTAACTA 59.306 50.000 6.32 0.00 0.00 2.24
4678 4823 2.948315 GACCGGGTCTAGAGATACGTTT 59.052 50.000 19.92 0.00 0.00 3.60
4691 4836 3.130516 AGATACGTTTGGCTCTGATTCGA 59.869 43.478 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 1.710809 GTATACCTGGCCATGGGGAAT 59.289 52.381 16.13 10.58 35.59 3.01
42 44 0.693049 GAGTATACCTGGCCATGGGG 59.307 60.000 20.97 15.44 37.18 4.96
139 144 1.809684 ACTCCGTAAGCAAGGAAAGC 58.190 50.000 0.00 0.00 35.90 3.51
152 157 1.622312 GGTTCCCACTTTCTACTCCGT 59.378 52.381 0.00 0.00 0.00 4.69
153 158 1.621814 TGGTTCCCACTTTCTACTCCG 59.378 52.381 0.00 0.00 0.00 4.63
154 159 3.409570 GTTGGTTCCCACTTTCTACTCC 58.590 50.000 0.00 0.00 30.78 3.85
155 160 3.181448 TGGTTGGTTCCCACTTTCTACTC 60.181 47.826 0.00 0.00 30.78 2.59
156 161 2.781174 TGGTTGGTTCCCACTTTCTACT 59.219 45.455 0.00 0.00 30.78 2.57
157 162 3.217681 TGGTTGGTTCCCACTTTCTAC 57.782 47.619 0.00 0.00 30.78 2.59
185 190 5.454966 AGCAAAAAGGGTAAAAGGAGAGAA 58.545 37.500 0.00 0.00 0.00 2.87
231 236 1.691215 GGAGAGCGAGCTGAAAAGCG 61.691 60.000 0.84 0.00 40.27 4.68
290 295 1.000521 CATGGACATGGGTGGTGCT 60.001 57.895 4.39 0.00 35.24 4.40
352 357 2.344741 CGTCGGAATCTTTCTTTCGTCC 59.655 50.000 0.00 0.00 0.00 4.79
353 358 2.222530 GCGTCGGAATCTTTCTTTCGTC 60.223 50.000 0.00 0.00 0.00 4.20
354 359 1.725164 GCGTCGGAATCTTTCTTTCGT 59.275 47.619 0.00 0.00 0.00 3.85
355 360 1.724623 TGCGTCGGAATCTTTCTTTCG 59.275 47.619 0.00 0.00 0.00 3.46
356 361 2.474691 GCTGCGTCGGAATCTTTCTTTC 60.475 50.000 0.00 0.00 0.00 2.62
357 362 1.464997 GCTGCGTCGGAATCTTTCTTT 59.535 47.619 0.00 0.00 0.00 2.52
358 363 1.079503 GCTGCGTCGGAATCTTTCTT 58.920 50.000 0.00 0.00 0.00 2.52
359 364 0.037326 TGCTGCGTCGGAATCTTTCT 60.037 50.000 0.00 0.00 0.00 2.52
360 365 0.796312 TTGCTGCGTCGGAATCTTTC 59.204 50.000 0.00 0.00 0.00 2.62
361 366 0.798776 CTTGCTGCGTCGGAATCTTT 59.201 50.000 0.00 0.00 0.00 2.52
362 367 1.639298 GCTTGCTGCGTCGGAATCTT 61.639 55.000 0.00 0.00 0.00 2.40
391 396 0.378257 GCTGTGTGTGTTCTGGTGTG 59.622 55.000 0.00 0.00 0.00 3.82
642 647 1.135960 GAAGGGGAGGAAGAGGATGG 58.864 60.000 0.00 0.00 0.00 3.51
777 782 2.560542 AGCAGCGATATCTTTCTCCGAT 59.439 45.455 0.34 0.00 0.00 4.18
860 873 1.749063 CCCAAATCTAAACCCGAAGCC 59.251 52.381 0.00 0.00 0.00 4.35
898 911 0.518636 GCGCTGCACTTGAGAAATGA 59.481 50.000 0.00 0.00 0.00 2.57
939 952 3.565670 GGGGGATTTTCTTTTCCTGCCTA 60.566 47.826 0.00 0.00 32.34 3.93
1009 1022 2.875485 GGCTATAGCGGCGATCGA 59.125 61.111 21.57 0.00 43.26 3.59
1057 1070 4.697756 CACCACGGCCACCACGAT 62.698 66.667 2.24 0.00 34.93 3.73
1060 1073 2.746277 GATCACCACGGCCACCAC 60.746 66.667 2.24 0.00 0.00 4.16
1190 1203 2.626743 AGAAAGAAAGCAGCAGCATTGT 59.373 40.909 3.17 0.00 45.49 2.71
1847 1873 2.019984 CCCTGTCTAATTGAGGCAAGC 58.980 52.381 0.00 0.00 39.99 4.01
2100 2126 7.544217 TCAGAAAAGAAAGTAAAAAGCCACAAC 59.456 33.333 0.00 0.00 0.00 3.32
2113 2139 6.890268 AGGTGTAAGGTTTCAGAAAAGAAAGT 59.110 34.615 0.00 0.00 38.11 2.66
2114 2140 7.334844 AGGTGTAAGGTTTCAGAAAAGAAAG 57.665 36.000 0.00 0.00 38.11 2.62
2163 2191 1.795768 TGAACTCAAGCCGTGTCATC 58.204 50.000 0.00 0.00 0.00 2.92
2643 2671 5.348179 CACAAATGAAAGACACAGCAACAAA 59.652 36.000 0.00 0.00 0.00 2.83
2650 2678 4.520111 TCATCCCACAAATGAAAGACACAG 59.480 41.667 0.00 0.00 30.37 3.66
2662 2690 5.429762 AGGATTAGACTGATCATCCCACAAA 59.570 40.000 9.25 0.00 36.58 2.83
3112 3149 5.949354 TGGTTTAGCAAGGCAACATAGTTAT 59.051 36.000 0.00 0.00 41.41 1.89
3144 3181 6.127897 GCTGTTAGTGAGTTGGCAAAATCTAT 60.128 38.462 0.00 0.00 31.64 1.98
3222 3260 7.545362 AGCAATCTTACTGAATGTGACATAC 57.455 36.000 0.00 0.00 0.00 2.39
3287 3325 8.537728 TCAAGGTAGGAAAATGCATATCAAAT 57.462 30.769 0.00 0.00 0.00 2.32
3396 3435 6.382087 TGTCAGTGGGATGTTAGGATATACT 58.618 40.000 0.00 0.00 0.00 2.12
3397 3436 6.295349 CCTGTCAGTGGGATGTTAGGATATAC 60.295 46.154 0.00 0.00 30.81 1.47
3398 3437 5.780282 CCTGTCAGTGGGATGTTAGGATATA 59.220 44.000 0.00 0.00 30.81 0.86
3774 3813 2.153645 CAATGCAGAGCCTGTACAACA 58.846 47.619 0.00 0.00 33.43 3.33
3856 3895 7.429633 ACATACAGATCTATTTCTTCTCACCG 58.570 38.462 0.00 0.00 0.00 4.94
3887 3926 6.717084 AGTGACAAATAGGAGGAAGAAAAAGG 59.283 38.462 0.00 0.00 0.00 3.11
3927 3966 6.515043 AAACAGCAAACGATCTGAAAATTG 57.485 33.333 0.00 0.00 34.57 2.32
4032 4071 2.026822 AGCTGCTGGCAATTACAGTAGT 60.027 45.455 20.55 10.51 46.29 2.73
4052 4091 5.235186 GTGCTACCTTGTATGAGTAATGCAG 59.765 44.000 0.00 0.00 32.01 4.41
4069 4108 4.844884 ACCAAGATTAGGAAAGTGCTACC 58.155 43.478 0.00 0.00 0.00 3.18
4102 4141 1.624813 CTTGAAACAATGTGGCCCCAT 59.375 47.619 0.00 0.00 0.00 4.00
4103 4142 1.047002 CTTGAAACAATGTGGCCCCA 58.953 50.000 0.00 0.00 0.00 4.96
4107 4146 2.407090 GAAGGCTTGAAACAATGTGGC 58.593 47.619 3.46 0.00 0.00 5.01
4109 4148 3.731652 TGGAAGGCTTGAAACAATGTG 57.268 42.857 3.46 0.00 0.00 3.21
4110 4149 4.961438 ATTGGAAGGCTTGAAACAATGT 57.039 36.364 3.46 0.00 0.00 2.71
4111 4150 5.179929 GGAAATTGGAAGGCTTGAAACAATG 59.820 40.000 3.46 0.00 0.00 2.82
4112 4151 5.163216 TGGAAATTGGAAGGCTTGAAACAAT 60.163 36.000 3.46 7.31 0.00 2.71
4114 4153 3.708631 TGGAAATTGGAAGGCTTGAAACA 59.291 39.130 3.46 0.00 0.00 2.83
4133 4172 7.345653 AGTGAAGGTTAGAGATTGTATCATGGA 59.654 37.037 0.00 0.00 0.00 3.41
4327 4454 0.929244 AAATCACCAGGGCATAGGCT 59.071 50.000 0.00 0.00 40.87 4.58
4377 4506 5.885230 TCAATGAACACAATAGCCAGAAG 57.115 39.130 0.00 0.00 0.00 2.85
4389 4518 2.838386 ATGCGCTCATCAATGAACAC 57.162 45.000 9.73 0.00 36.18 3.32
4500 4639 6.719370 ACCCTCTATGCAAGTTTTATGTTTGA 59.281 34.615 0.00 0.00 0.00 2.69
4635 4780 2.301346 CAGCCGGATGGAAAAGCTTAT 58.699 47.619 13.14 0.00 37.49 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.