Multiple sequence alignment - TraesCS1A01G236000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G236000 chr1A 100.000 7454 0 0 1 7454 418047807 418040354 0.000000e+00 13766.0
1 TraesCS1A01G236000 chr1D 96.447 3124 93 13 3751 6866 325681325 325684438 0.000000e+00 5138.0
2 TraesCS1A01G236000 chr1D 92.530 2771 96 40 738 3430 325676928 325679665 0.000000e+00 3868.0
3 TraesCS1A01G236000 chr1D 90.996 522 30 5 6933 7454 325684697 325685201 0.000000e+00 688.0
4 TraesCS1A01G236000 chr1D 96.382 304 10 1 3418 3720 325681025 325681328 4.020000e-137 499.0
5 TraesCS1A01G236000 chr1D 92.593 81 5 1 65 145 325676246 325676325 1.700000e-21 115.0
6 TraesCS1A01G236000 chr1D 92.500 40 2 1 7252 7290 284300013 284300052 1.000000e-03 56.5
7 TraesCS1A01G236000 chr1B 87.160 3232 172 103 342 3430 438695420 438698551 0.000000e+00 3445.0
8 TraesCS1A01G236000 chr1B 95.481 1372 51 7 5506 6866 438700674 438702045 0.000000e+00 2180.0
9 TraesCS1A01G236000 chr1B 86.909 1291 123 27 3863 5127 438699167 438700437 0.000000e+00 1406.0
10 TraesCS1A01G236000 chr1B 91.008 367 25 8 7088 7453 438702616 438702975 8.690000e-134 488.0
11 TraesCS1A01G236000 chr1B 91.244 217 15 4 5128 5342 438700479 438700693 7.320000e-75 292.0
12 TraesCS1A01G236000 chr1B 90.000 160 10 3 6933 7087 438702301 438702459 1.270000e-47 202.0
13 TraesCS1A01G236000 chr4B 76.886 411 55 19 6971 7346 317758947 317759352 5.900000e-46 196.0
14 TraesCS1A01G236000 chr4B 94.340 53 3 0 3719 3771 209118432 209118484 1.720000e-11 82.4
15 TraesCS1A01G236000 chr3D 89.262 149 16 0 5362 5510 554978631 554978779 3.550000e-43 187.0
16 TraesCS1A01G236000 chr3D 94.340 53 3 0 3719 3771 213379492 213379544 1.720000e-11 82.4
17 TraesCS1A01G236000 chr3D 94.340 53 3 0 3719 3771 213388135 213388187 1.720000e-11 82.4
18 TraesCS1A01G236000 chr3D 85.333 75 9 2 1 74 58757840 58757913 8.020000e-10 76.8
19 TraesCS1A01G236000 chr4D 76.667 390 54 20 6971 7346 212163833 212163467 1.650000e-41 182.0
20 TraesCS1A01G236000 chr4A 77.208 351 44 13 6971 7288 312708012 312707665 9.940000e-39 172.0
21 TraesCS1A01G236000 chr4A 88.312 77 8 1 1 76 537587709 537587785 2.860000e-14 91.6
22 TraesCS1A01G236000 chr4A 73.273 333 56 20 6984 7286 651100989 651100660 2.860000e-14 91.6
23 TraesCS1A01G236000 chr3B 75.668 337 68 11 4130 4461 760134654 760134981 1.000000e-33 156.0
24 TraesCS1A01G236000 chr2D 81.188 202 24 12 7152 7344 587108063 587108259 4.660000e-32 150.0
25 TraesCS1A01G236000 chr2D 85.333 75 8 3 1 74 354683168 354683096 2.880000e-09 75.0
26 TraesCS1A01G236000 chr6B 83.125 160 22 5 5350 5506 532385204 532385361 2.800000e-29 141.0
27 TraesCS1A01G236000 chr6B 88.732 71 6 2 5340 5409 633848292 633848361 1.330000e-12 86.1
28 TraesCS1A01G236000 chr6B 94.340 53 3 0 3719 3771 311358005 311358057 1.720000e-11 82.4
29 TraesCS1A01G236000 chr6B 85.714 77 10 1 2 78 632421345 632421420 6.200000e-11 80.5
30 TraesCS1A01G236000 chr6A 81.212 165 26 5 5350 5512 495702386 495702547 2.180000e-25 128.0
31 TraesCS1A01G236000 chr6A 90.909 66 6 0 13 78 499639179 499639114 1.030000e-13 89.8
32 TraesCS1A01G236000 chr6A 91.525 59 3 2 7095 7151 16361639 16361697 6.200000e-11 80.5
33 TraesCS1A01G236000 chr2B 80.864 162 22 8 7189 7344 708827323 708827481 1.310000e-22 119.0
34 TraesCS1A01G236000 chr2B 96.226 53 2 0 3719 3771 1466966 1466914 3.700000e-13 87.9
35 TraesCS1A01G236000 chr2B 89.474 57 5 1 18 74 421704124 421704069 3.730000e-08 71.3
36 TraesCS1A01G236000 chr5B 90.667 75 7 0 1 75 682853519 682853593 4.760000e-17 100.0
37 TraesCS1A01G236000 chr5B 92.453 53 4 0 5350 5402 494733156 494733104 8.020000e-10 76.8
38 TraesCS1A01G236000 chr7A 82.645 121 10 7 7018 7133 91401218 91401332 6.160000e-16 97.1
39 TraesCS1A01G236000 chr7A 81.707 82 12 3 1 80 495571628 495571708 1.740000e-06 65.8
40 TraesCS1A01G236000 chr7B 87.654 81 9 1 1 80 461239037 461239117 7.960000e-15 93.5
41 TraesCS1A01G236000 chr5D 93.333 60 4 0 5350 5409 410642368 410642427 1.030000e-13 89.8
42 TraesCS1A01G236000 chr5D 100.000 28 0 0 1897 1924 516242913 516242886 1.400000e-02 52.8
43 TraesCS1A01G236000 chrUn 94.340 53 3 0 3719 3771 182427581 182427633 1.720000e-11 82.4
44 TraesCS1A01G236000 chrUn 94.340 53 3 0 3719 3771 231558206 231558154 1.720000e-11 82.4
45 TraesCS1A01G236000 chrUn 94.340 53 3 0 3719 3771 273329921 273329973 1.720000e-11 82.4
46 TraesCS1A01G236000 chr6D 94.340 53 3 0 3719 3771 458916360 458916308 1.720000e-11 82.4
47 TraesCS1A01G236000 chr5A 93.750 48 3 0 5350 5397 522361565 522361612 1.040000e-08 73.1
48 TraesCS1A01G236000 chr2A 78.448 116 17 5 5350 5463 14734634 14734743 1.340000e-07 69.4
49 TraesCS1A01G236000 chr7D 92.683 41 3 0 7102 7142 627307097 627307057 8.080000e-05 60.2
50 TraesCS1A01G236000 chr3A 100.000 28 0 0 1897 1924 409819582 409819609 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G236000 chr1A 418040354 418047807 7453 True 13766.0 13766 100.000000 1 7454 1 chr1A.!!$R1 7453
1 TraesCS1A01G236000 chr1D 325676246 325685201 8955 False 2061.6 5138 93.789600 65 7454 5 chr1D.!!$F2 7389
2 TraesCS1A01G236000 chr1B 438695420 438702975 7555 False 1335.5 3445 90.300333 342 7453 6 chr1B.!!$F1 7111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 986 0.191064 TGTCTTCCCTGTCCCTCACT 59.809 55.000 0.00 0.00 0.00 3.41 F
789 987 0.610687 GTCTTCCCTGTCCCTCACTG 59.389 60.000 0.00 0.00 0.00 3.66 F
790 988 1.194781 TCTTCCCTGTCCCTCACTGC 61.195 60.000 0.00 0.00 0.00 4.40 F
2081 2342 1.341531 CTGGACGAAGGTGTGTCTTCT 59.658 52.381 0.00 0.00 40.56 2.85 F
2487 2781 1.960417 TCACAATCCTGTTTGCGACA 58.040 45.000 0.00 0.00 31.64 4.35 F
3738 5532 0.387239 GCCAGCACGAAAAGCGAAAT 60.387 50.000 0.00 0.00 44.57 2.17 F
3771 5565 0.037046 GGGGCTGTTTTGGCATCAAG 60.037 55.000 0.00 0.00 33.98 3.02 F
4127 5927 0.678950 TGCTGACATGTCTTCACCGA 59.321 50.000 25.55 3.59 0.00 4.69 F
5286 7147 2.772568 TGCACATGTACTGTTGCAAC 57.227 45.000 22.83 22.83 38.26 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2706 3013 0.169230 AAGCGTGCGTTTGTTGTGAA 59.831 45.000 0.00 0.00 0.00 3.18 R
2781 3088 6.038825 TGCATCAGTTGGTTAAATTATACCCG 59.961 38.462 6.47 0.00 33.34 5.28 R
2888 3195 4.662468 AGACCAGCATAGACATGTACTG 57.338 45.455 0.00 1.94 34.40 2.74 R
3719 5513 0.387239 ATTTCGCTTTTCGTGCTGGC 60.387 50.000 0.00 0.00 39.67 4.85 R
3745 5539 0.545071 CCAAAACAGCCCCAATCCCT 60.545 55.000 0.00 0.00 0.00 4.20 R
5046 6867 0.251916 TCACCTGGTAGCCAAATCCG 59.748 55.000 0.00 0.00 30.80 4.18 R
5286 7147 2.977772 TGCCTTTTCTGTTTGGTTGG 57.022 45.000 0.00 0.00 0.00 3.77 R
6079 7951 0.036732 GGAGGACCTGTGCACATGAA 59.963 55.000 26.20 1.55 0.00 2.57 R
7303 9543 0.107654 GCTCCATGTAGGGCGACTTT 60.108 55.000 0.00 0.00 38.24 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 5.631119 ACATTTTAACAACTAGCTGGGAGT 58.369 37.500 0.85 0.00 0.00 3.85
102 103 1.270907 CAACTAGCTGGGAGTGGAGT 58.729 55.000 0.85 0.00 0.00 3.85
105 106 0.616111 CTAGCTGGGAGTGGAGTGGT 60.616 60.000 0.00 0.00 0.00 4.16
111 112 0.693049 GGGAGTGGAGTGGTTGTCAT 59.307 55.000 0.00 0.00 0.00 3.06
147 148 6.612306 AGTCATTTACCTTTCATTCTTTCGC 58.388 36.000 0.00 0.00 0.00 4.70
148 149 6.206634 AGTCATTTACCTTTCATTCTTTCGCA 59.793 34.615 0.00 0.00 0.00 5.10
149 150 6.861055 GTCATTTACCTTTCATTCTTTCGCAA 59.139 34.615 0.00 0.00 0.00 4.85
152 153 8.711457 CATTTACCTTTCATTCTTTCGCAAAAT 58.289 29.630 0.00 0.00 0.00 1.82
153 154 8.655651 TTTACCTTTCATTCTTTCGCAAAATT 57.344 26.923 0.00 0.00 0.00 1.82
154 155 8.655651 TTACCTTTCATTCTTTCGCAAAATTT 57.344 26.923 0.00 0.00 0.00 1.82
157 158 7.065283 CCTTTCATTCTTTCGCAAAATTTGTC 58.935 34.615 7.60 0.00 0.00 3.18
158 159 7.254387 CCTTTCATTCTTTCGCAAAATTTGTCA 60.254 33.333 7.60 0.00 0.00 3.58
159 160 7.531280 TTCATTCTTTCGCAAAATTTGTCAA 57.469 28.000 7.60 0.00 0.00 3.18
161 162 7.968246 TCATTCTTTCGCAAAATTTGTCAAAA 58.032 26.923 7.60 5.20 0.00 2.44
162 163 8.446273 TCATTCTTTCGCAAAATTTGTCAAAAA 58.554 25.926 7.60 3.08 0.00 1.94
168 169 9.994432 TTTCGCAAAATTTGTCAAAAATTATGT 57.006 22.222 7.60 0.00 30.38 2.29
170 171 9.430838 TCGCAAAATTTGTCAAAAATTATGTTG 57.569 25.926 7.60 0.00 30.38 3.33
192 193 9.356433 TGTTGACATAATATTGATGCAAACTTG 57.644 29.630 0.00 0.00 30.17 3.16
193 194 9.357652 GTTGACATAATATTGATGCAAACTTGT 57.642 29.630 0.00 0.00 0.00 3.16
194 195 9.571810 TTGACATAATATTGATGCAAACTTGTC 57.428 29.630 0.00 0.00 0.00 3.18
195 196 8.738106 TGACATAATATTGATGCAAACTTGTCA 58.262 29.630 0.00 0.00 0.00 3.58
196 197 9.571810 GACATAATATTGATGCAAACTTGTCAA 57.428 29.630 0.00 0.95 35.33 3.18
197 198 9.926158 ACATAATATTGATGCAAACTTGTCAAA 57.074 25.926 2.53 0.00 34.62 2.69
203 204 6.981762 TGATGCAAACTTGTCAAAATTTGT 57.018 29.167 17.20 5.08 35.06 2.83
204 205 6.773080 TGATGCAAACTTGTCAAAATTTGTG 58.227 32.000 17.20 0.00 35.06 3.33
205 206 6.592994 TGATGCAAACTTGTCAAAATTTGTGA 59.407 30.769 17.20 9.31 35.06 3.58
206 207 6.981762 TGCAAACTTGTCAAAATTTGTGAT 57.018 29.167 17.20 0.00 35.06 3.06
207 208 6.773080 TGCAAACTTGTCAAAATTTGTGATG 58.227 32.000 17.20 0.00 35.06 3.07
208 209 6.370994 TGCAAACTTGTCAAAATTTGTGATGT 59.629 30.769 17.20 0.24 35.06 3.06
209 210 6.683708 GCAAACTTGTCAAAATTTGTGATGTG 59.316 34.615 17.20 0.00 35.06 3.21
210 211 7.623925 GCAAACTTGTCAAAATTTGTGATGTGT 60.624 33.333 17.20 0.00 35.06 3.72
211 212 8.867935 CAAACTTGTCAAAATTTGTGATGTGTA 58.132 29.630 5.56 0.00 0.00 2.90
212 213 8.994429 AACTTGTCAAAATTTGTGATGTGTAA 57.006 26.923 5.56 0.00 0.00 2.41
213 214 8.994429 ACTTGTCAAAATTTGTGATGTGTAAA 57.006 26.923 5.56 0.00 0.00 2.01
214 215 9.598517 ACTTGTCAAAATTTGTGATGTGTAAAT 57.401 25.926 5.56 0.00 0.00 1.40
294 295 5.584253 TTTTTCTGTCGGGATTTTGACAA 57.416 34.783 0.00 0.00 43.91 3.18
295 296 4.829064 TTTCTGTCGGGATTTTGACAAG 57.171 40.909 0.00 0.00 43.91 3.16
296 297 3.485463 TCTGTCGGGATTTTGACAAGT 57.515 42.857 0.00 0.00 43.91 3.16
297 298 3.815809 TCTGTCGGGATTTTGACAAGTT 58.184 40.909 0.00 0.00 43.91 2.66
298 299 4.204012 TCTGTCGGGATTTTGACAAGTTT 58.796 39.130 0.00 0.00 43.91 2.66
299 300 4.036262 TCTGTCGGGATTTTGACAAGTTTG 59.964 41.667 0.00 0.00 43.91 2.93
300 301 3.049912 GTCGGGATTTTGACAAGTTTGC 58.950 45.455 0.00 0.00 35.20 3.68
301 302 2.690497 TCGGGATTTTGACAAGTTTGCA 59.310 40.909 0.00 0.00 0.00 4.08
302 303 3.131223 TCGGGATTTTGACAAGTTTGCAA 59.869 39.130 0.00 0.00 0.00 4.08
303 304 3.490526 CGGGATTTTGACAAGTTTGCAAG 59.509 43.478 0.00 0.00 0.00 4.01
304 305 4.441792 GGGATTTTGACAAGTTTGCAAGT 58.558 39.130 0.00 0.00 0.00 3.16
305 306 5.596845 GGGATTTTGACAAGTTTGCAAGTA 58.403 37.500 0.00 0.00 0.00 2.24
306 307 6.223120 GGGATTTTGACAAGTTTGCAAGTAT 58.777 36.000 0.00 0.00 0.00 2.12
307 308 6.146021 GGGATTTTGACAAGTTTGCAAGTATG 59.854 38.462 0.00 2.59 0.00 2.39
308 309 6.146021 GGATTTTGACAAGTTTGCAAGTATGG 59.854 38.462 0.00 0.00 0.00 2.74
309 310 5.590530 TTTGACAAGTTTGCAAGTATGGT 57.409 34.783 0.00 0.00 0.00 3.55
310 311 4.566545 TGACAAGTTTGCAAGTATGGTG 57.433 40.909 0.00 0.00 0.00 4.17
311 312 4.203226 TGACAAGTTTGCAAGTATGGTGA 58.797 39.130 0.00 0.00 0.00 4.02
312 313 4.826733 TGACAAGTTTGCAAGTATGGTGAT 59.173 37.500 0.00 0.00 0.00 3.06
313 314 5.125100 ACAAGTTTGCAAGTATGGTGATG 57.875 39.130 0.00 0.00 0.00 3.07
314 315 4.584325 ACAAGTTTGCAAGTATGGTGATGT 59.416 37.500 0.00 0.00 0.00 3.06
315 316 5.767665 ACAAGTTTGCAAGTATGGTGATGTA 59.232 36.000 0.00 0.00 0.00 2.29
316 317 6.434028 ACAAGTTTGCAAGTATGGTGATGTAT 59.566 34.615 0.00 0.00 0.00 2.29
317 318 7.609918 ACAAGTTTGCAAGTATGGTGATGTATA 59.390 33.333 0.00 0.00 0.00 1.47
318 319 8.458052 CAAGTTTGCAAGTATGGTGATGTATAA 58.542 33.333 0.00 0.00 0.00 0.98
319 320 8.574251 AGTTTGCAAGTATGGTGATGTATAAA 57.426 30.769 0.00 0.00 0.00 1.40
320 321 9.019656 AGTTTGCAAGTATGGTGATGTATAAAA 57.980 29.630 0.00 0.00 0.00 1.52
321 322 9.801873 GTTTGCAAGTATGGTGATGTATAAAAT 57.198 29.630 0.00 0.00 0.00 1.82
324 325 9.800433 TGCAAGTATGGTGATGTATAAAATTTG 57.200 29.630 0.00 0.00 0.00 2.32
325 326 9.801873 GCAAGTATGGTGATGTATAAAATTTGT 57.198 29.630 0.00 0.00 0.00 2.83
360 361 9.858247 GTGATGTATAAATATTGTTGTACGTGG 57.142 33.333 0.00 0.00 30.13 4.94
361 362 8.552865 TGATGTATAAATATTGTTGTACGTGGC 58.447 33.333 0.00 0.00 30.13 5.01
362 363 7.845066 TGTATAAATATTGTTGTACGTGGCA 57.155 32.000 0.00 0.00 30.13 4.92
363 364 8.265165 TGTATAAATATTGTTGTACGTGGCAA 57.735 30.769 0.00 0.10 30.13 4.52
364 365 8.894731 TGTATAAATATTGTTGTACGTGGCAAT 58.105 29.630 0.00 6.17 35.90 3.56
365 366 9.377383 GTATAAATATTGTTGTACGTGGCAATC 57.623 33.333 0.00 0.17 34.05 2.67
406 411 4.441792 GGGATTTTGACAAGTTTGCAAGT 58.558 39.130 0.00 0.00 0.00 3.16
416 421 4.754618 ACAAGTTTGCAAGTATCACATCGA 59.245 37.500 0.00 0.00 0.00 3.59
425 430 5.735324 CAAGTATCACATCGATTGAGCTTG 58.265 41.667 23.09 23.09 35.50 4.01
426 431 5.268118 AGTATCACATCGATTGAGCTTGA 57.732 39.130 13.25 3.79 35.39 3.02
439 444 5.811399 TTGAGCTTGAAAGTTTTTCTCGA 57.189 34.783 0.00 0.00 0.00 4.04
448 453 8.980143 TTGAAAGTTTTTCTCGAATTTTCTGT 57.020 26.923 3.53 0.00 35.22 3.41
454 459 8.968242 AGTTTTTCTCGAATTTTCTGTAAATGC 58.032 29.630 0.00 0.00 36.57 3.56
463 468 6.911484 ATTTTCTGTAAATGCGAAAGAACG 57.089 33.333 0.00 0.00 35.15 3.95
506 525 1.144969 TTGCTTGAACTTACCGAGCG 58.855 50.000 0.00 0.00 42.52 5.03
535 558 2.609459 CTCAGTCGGCACACATAAATCC 59.391 50.000 0.00 0.00 0.00 3.01
622 645 6.852853 CAGCTTAATTAGATGCACATTAACCG 59.147 38.462 0.00 0.00 32.81 4.44
623 646 6.542370 AGCTTAATTAGATGCACATTAACCGT 59.458 34.615 0.00 0.00 0.00 4.83
651 674 6.484288 TCATAGACAAGGAAAACACCATCAT 58.516 36.000 0.00 0.00 0.00 2.45
787 985 1.002544 CTTGTCTTCCCTGTCCCTCAC 59.997 57.143 0.00 0.00 0.00 3.51
788 986 0.191064 TGTCTTCCCTGTCCCTCACT 59.809 55.000 0.00 0.00 0.00 3.41
789 987 0.610687 GTCTTCCCTGTCCCTCACTG 59.389 60.000 0.00 0.00 0.00 3.66
790 988 1.194781 TCTTCCCTGTCCCTCACTGC 61.195 60.000 0.00 0.00 0.00 4.40
791 989 2.190488 CTTCCCTGTCCCTCACTGCC 62.190 65.000 0.00 0.00 0.00 4.85
792 990 2.930019 CCCTGTCCCTCACTGCCA 60.930 66.667 0.00 0.00 0.00 4.92
793 991 2.667418 CCTGTCCCTCACTGCCAG 59.333 66.667 0.00 0.00 0.00 4.85
794 992 2.219875 CCTGTCCCTCACTGCCAGT 61.220 63.158 0.00 0.00 0.00 4.00
826 1024 1.991070 CCATATCCATTGCTCCCTCCT 59.009 52.381 0.00 0.00 0.00 3.69
892 1090 1.963464 TAATTGCCCCGACTCCGTCC 61.963 60.000 0.00 0.00 0.00 4.79
955 1180 1.586154 CCACGCAAACCCTAAGCCAG 61.586 60.000 0.00 0.00 0.00 4.85
956 1181 1.971695 ACGCAAACCCTAAGCCAGC 60.972 57.895 0.00 0.00 0.00 4.85
957 1182 2.700773 CGCAAACCCTAAGCCAGCC 61.701 63.158 0.00 0.00 0.00 4.85
958 1183 1.606313 GCAAACCCTAAGCCAGCCA 60.606 57.895 0.00 0.00 0.00 4.75
1152 1380 2.401766 GGTGCCCAAGCTCATGACG 61.402 63.158 0.00 0.00 40.80 4.35
1319 1548 1.360192 GTGCTTTGCCGCTCTGTTT 59.640 52.632 0.00 0.00 0.00 2.83
1350 1581 3.857038 GGGATCTGGGCGCGGTTA 61.857 66.667 8.83 0.00 0.00 2.85
1665 1901 4.201580 GCTTTATCCCGCGTTTTTCATTTG 60.202 41.667 4.92 0.00 0.00 2.32
1688 1924 5.483231 TGGATGTTCTCAACTTCTCATCTCT 59.517 40.000 0.00 0.00 36.23 3.10
1690 1926 6.313411 GGATGTTCTCAACTTCTCATCTCTTG 59.687 42.308 0.00 0.00 36.23 3.02
1725 1961 1.868498 GCTGCATCAGATTCTCTGCTC 59.132 52.381 15.25 6.91 43.95 4.26
1897 2157 2.224314 GGAGAACTTTGTTGCTTCTCGG 59.776 50.000 4.20 0.00 40.54 4.63
1941 2201 3.443329 TGTTTTTCGATCATGGGATGTGG 59.557 43.478 0.00 0.00 32.67 4.17
1962 2222 3.924073 GGAATTAAACGTTTGGTCATGGC 59.076 43.478 23.46 4.73 0.00 4.40
2081 2342 1.341531 CTGGACGAAGGTGTGTCTTCT 59.658 52.381 0.00 0.00 40.56 2.85
2161 2422 4.671766 CGTTTCGGTGGATTTCAGAATTCC 60.672 45.833 14.85 14.85 0.00 3.01
2162 2423 2.627945 TCGGTGGATTTCAGAATTCCG 58.372 47.619 16.13 10.82 36.54 4.30
2200 2461 4.870221 ATTTACCTTCGCGTGGTATTTC 57.130 40.909 25.32 0.00 39.49 2.17
2273 2536 8.303156 CCTACTACGAGATCATGATTCAAGATT 58.697 37.037 10.14 0.00 0.00 2.40
2315 2604 8.528044 ACTATTTAGAACTTGTCCTAGGAGAG 57.472 38.462 13.15 15.54 0.00 3.20
2316 2605 8.117312 ACTATTTAGAACTTGTCCTAGGAGAGT 58.883 37.037 13.15 16.21 0.00 3.24
2317 2606 9.629878 CTATTTAGAACTTGTCCTAGGAGAGTA 57.370 37.037 22.03 10.93 0.00 2.59
2318 2607 7.700022 TTTAGAACTTGTCCTAGGAGAGTAC 57.300 40.000 22.03 8.95 0.00 2.73
2404 2693 8.792633 TCTTGTTAGTAGGGATTGATTGTTTTG 58.207 33.333 0.00 0.00 0.00 2.44
2429 2718 5.479124 TTTGTTCTCCCAGGAGTAGTTAC 57.521 43.478 13.36 6.26 42.49 2.50
2487 2781 1.960417 TCACAATCCTGTTTGCGACA 58.040 45.000 0.00 0.00 31.64 4.35
2488 2782 2.293170 TCACAATCCTGTTTGCGACAA 58.707 42.857 0.00 0.00 37.93 3.18
2492 2789 3.130340 ACAATCCTGTTTGCGACAAACTT 59.870 39.130 25.12 14.60 37.93 2.66
2507 2804 4.964593 ACAAACTTCGGTATTACACTGGT 58.035 39.130 0.00 0.00 33.95 4.00
2520 2817 8.612619 GGTATTACACTGGTGTTTTCATATGAG 58.387 37.037 11.69 0.00 41.83 2.90
2523 2820 5.869579 ACACTGGTGTTTTCATATGAGAGT 58.130 37.500 5.39 0.00 41.83 3.24
2525 2822 6.169094 CACTGGTGTTTTCATATGAGAGTCT 58.831 40.000 5.39 0.00 0.00 3.24
2550 2847 3.008594 TGTTGGTATTGGTGTCCCAGTAG 59.991 47.826 0.00 0.00 43.15 2.57
2556 2853 3.673543 TTGGTGTCCCAGTAGGTTTTT 57.326 42.857 0.00 0.00 43.15 1.94
2565 2862 7.446319 GTGTCCCAGTAGGTTTTTAGTTGTATT 59.554 37.037 0.00 0.00 36.75 1.89
2650 2957 4.019919 CAGTATGTTGTACATTGCAGGC 57.980 45.455 0.00 0.00 39.88 4.85
2781 3088 3.134804 ACATGTATCTGCCTGGGTAACTC 59.865 47.826 0.00 0.00 0.00 3.01
2901 3208 4.410228 ACCAGGAATGCAGTACATGTCTAT 59.590 41.667 0.00 0.00 39.60 1.98
2924 3231 4.465305 TGCTGGTCTAGTTAGGGTTAAGTC 59.535 45.833 0.00 0.00 0.00 3.01
2969 3276 4.733077 TTCCCAGGAAGTTGGTTCATTA 57.267 40.909 0.00 0.00 36.82 1.90
3107 3415 8.315391 TGTAGAAGAATGATTTGTCTGACTTG 57.685 34.615 9.51 0.00 0.00 3.16
3143 3452 8.684386 TTTGGTTAACTGATGAATACTGTCAA 57.316 30.769 5.42 0.00 0.00 3.18
3195 3529 8.771920 CAACTGATGGATTGTTAGTACAGTTA 57.228 34.615 0.00 0.00 42.63 2.24
3232 3567 9.660180 TTAATTTGGCACTTTCTTTTAGTTTGT 57.340 25.926 0.00 0.00 0.00 2.83
3343 3685 2.651455 TGCTAGCCGTAGACACAGTAT 58.349 47.619 13.29 0.00 0.00 2.12
3470 5262 6.939730 ACATTGTTGTACATGACTGGTATCAA 59.060 34.615 0.00 0.00 33.16 2.57
3671 5464 3.392616 CTGGTAGATATGGAAAGGGCAGT 59.607 47.826 0.00 0.00 0.00 4.40
3718 5512 5.261209 TGGTGATCACAGGTTTTCTTTTG 57.739 39.130 26.47 0.00 0.00 2.44
3719 5513 4.099266 TGGTGATCACAGGTTTTCTTTTGG 59.901 41.667 26.47 0.00 0.00 3.28
3720 5514 4.051237 GTGATCACAGGTTTTCTTTTGGC 58.949 43.478 21.07 0.00 0.00 4.52
3723 5517 2.430332 TCACAGGTTTTCTTTTGGCCAG 59.570 45.455 5.11 0.00 0.00 4.85
3726 5520 1.138859 AGGTTTTCTTTTGGCCAGCAC 59.861 47.619 5.11 0.00 0.00 4.40
3727 5521 1.208259 GTTTTCTTTTGGCCAGCACG 58.792 50.000 5.11 0.00 0.00 5.34
3728 5522 1.107114 TTTTCTTTTGGCCAGCACGA 58.893 45.000 5.11 0.00 0.00 4.35
3729 5523 1.107114 TTTCTTTTGGCCAGCACGAA 58.893 45.000 5.11 3.60 0.00 3.85
3730 5524 1.107114 TTCTTTTGGCCAGCACGAAA 58.893 45.000 5.11 1.96 0.00 3.46
3731 5525 1.107114 TCTTTTGGCCAGCACGAAAA 58.893 45.000 5.11 1.12 0.00 2.29
3732 5526 1.066908 TCTTTTGGCCAGCACGAAAAG 59.933 47.619 16.12 16.12 36.95 2.27
3733 5527 0.529555 TTTTGGCCAGCACGAAAAGC 60.530 50.000 5.11 0.00 0.00 3.51
3735 5529 3.353836 GGCCAGCACGAAAAGCGA 61.354 61.111 0.00 0.00 44.57 4.93
3736 5530 2.637025 GCCAGCACGAAAAGCGAA 59.363 55.556 0.00 0.00 44.57 4.70
3738 5532 0.387239 GCCAGCACGAAAAGCGAAAT 60.387 50.000 0.00 0.00 44.57 2.17
3739 5533 1.330306 CCAGCACGAAAAGCGAAATG 58.670 50.000 0.00 0.00 44.57 2.32
3741 5535 1.971962 CAGCACGAAAAGCGAAATGAC 59.028 47.619 0.00 0.00 44.57 3.06
3742 5536 1.069227 AGCACGAAAAGCGAAATGACC 60.069 47.619 0.00 0.00 44.57 4.02
3743 5537 1.334599 GCACGAAAAGCGAAATGACCA 60.335 47.619 0.00 0.00 44.57 4.02
3744 5538 2.856720 GCACGAAAAGCGAAATGACCAA 60.857 45.455 0.00 0.00 44.57 3.67
3745 5539 3.367607 CACGAAAAGCGAAATGACCAAA 58.632 40.909 0.00 0.00 44.57 3.28
3746 5540 3.421888 CACGAAAAGCGAAATGACCAAAG 59.578 43.478 0.00 0.00 44.57 2.77
3747 5541 2.979813 CGAAAAGCGAAATGACCAAAGG 59.020 45.455 0.00 0.00 44.57 3.11
3748 5542 3.317150 GAAAAGCGAAATGACCAAAGGG 58.683 45.455 0.00 0.00 41.29 3.95
3749 5543 2.286365 AAGCGAAATGACCAAAGGGA 57.714 45.000 0.00 0.00 38.05 4.20
3750 5544 2.514458 AGCGAAATGACCAAAGGGAT 57.486 45.000 0.00 0.00 38.05 3.85
3771 5565 0.037046 GGGGCTGTTTTGGCATCAAG 60.037 55.000 0.00 0.00 33.98 3.02
4127 5927 0.678950 TGCTGACATGTCTTCACCGA 59.321 50.000 25.55 3.59 0.00 4.69
4304 6104 7.362142 GGGACCAGTTGATTTTCTTATGACTTC 60.362 40.741 0.00 0.00 0.00 3.01
4407 6207 7.379797 GCCTTTCTGAAGTATGAAACAAAAGAC 59.620 37.037 0.00 0.00 0.00 3.01
4470 6270 8.647143 ACAAAATAGAGGTTTGTGAAAACATG 57.353 30.769 1.94 0.00 45.19 3.21
4501 6301 4.431661 AGCAATTGCAGTTCTCTTTAGC 57.568 40.909 30.89 0.00 45.16 3.09
4527 6327 4.325028 TTCAAAATCACTTGCAGTGCAT 57.675 36.364 20.50 1.02 45.54 3.96
4533 6333 5.710513 AATCACTTGCAGTGCATAAAGAA 57.289 34.783 20.50 7.95 45.54 2.52
4536 6336 4.580167 TCACTTGCAGTGCATAAAGAAAGT 59.420 37.500 20.50 14.41 45.54 2.66
4546 6357 5.003804 TGCATAAAGAAAGTGAGGGAAGAC 58.996 41.667 0.00 0.00 0.00 3.01
4550 6361 3.669251 AGAAAGTGAGGGAAGACGAAG 57.331 47.619 0.00 0.00 0.00 3.79
4560 6371 6.091849 GTGAGGGAAGACGAAGGTTTTAATAC 59.908 42.308 0.00 0.00 0.00 1.89
4563 6374 7.854337 AGGGAAGACGAAGGTTTTAATACATA 58.146 34.615 0.00 0.00 0.00 2.29
4571 6383 8.569641 ACGAAGGTTTTAATACATACAGCAAAA 58.430 29.630 0.00 0.00 0.00 2.44
4678 6491 8.489990 TTTGATCTGAACATTCTTGATCTCTC 57.510 34.615 19.14 5.45 38.00 3.20
4692 6505 7.212976 TCTTGATCTCTCATACAAGTAATGGC 58.787 38.462 0.00 0.00 40.07 4.40
4923 6744 4.751767 AAAATGGGCTGACACAGAAAAA 57.248 36.364 2.81 0.00 32.44 1.94
5046 6867 5.435686 TGGGATATGTGCCTCCATATAAC 57.564 43.478 0.90 0.00 37.97 1.89
5216 7077 6.337356 TGAGGAAAGTGGAAATGTTTGTTTC 58.663 36.000 0.00 0.00 37.37 2.78
5286 7147 2.772568 TGCACATGTACTGTTGCAAC 57.227 45.000 22.83 22.83 38.26 4.17
5466 7329 6.620877 ACAGATAGAGTACCAAACATGGAA 57.379 37.500 1.10 0.00 0.00 3.53
5715 7584 5.454755 GCTTATGCAGTACCCTTTATCTCCA 60.455 44.000 0.00 0.00 39.41 3.86
5814 7683 5.045213 TGAACTATCCCCTAATTCAGTTGCA 60.045 40.000 0.00 0.00 0.00 4.08
6079 7951 7.882791 TCAGGTATGTTTTACAGATGATGTGTT 59.117 33.333 0.00 0.00 43.80 3.32
6234 8106 3.007635 GACCGGTGCTAGTAAATGCTTT 58.992 45.455 14.63 0.00 0.00 3.51
6252 8124 8.422577 AATGCTTTGGTAACTAATTCTTCCTT 57.577 30.769 0.00 0.00 37.61 3.36
6286 8158 4.234550 TCTTAGGACTGGCATCATACCAT 58.765 43.478 0.00 0.00 36.36 3.55
6327 8199 1.318158 CCTGGCTGGATGCAGGTTTC 61.318 60.000 16.65 0.00 45.15 2.78
6524 8396 2.096466 TGTGTCGCACAATTGATCGTTC 60.096 45.455 13.59 11.88 41.69 3.95
6546 8418 1.146774 TCCCATTGTTTCTTCTGGCCA 59.853 47.619 4.71 4.71 0.00 5.36
6562 8434 1.371183 CCACCACCATGTGTCGTCT 59.629 57.895 0.00 0.00 34.35 4.18
6632 8504 9.301153 CTTGAAAACTGCTAAAGTGTGTATTTT 57.699 29.630 0.00 0.00 39.81 1.82
6742 8614 4.394729 ACTGAATTCCGCTTGTTTTCCTA 58.605 39.130 2.27 0.00 0.00 2.94
6743 8615 4.825085 ACTGAATTCCGCTTGTTTTCCTAA 59.175 37.500 2.27 0.00 0.00 2.69
6745 8617 5.768317 TGAATTCCGCTTGTTTTCCTAAAG 58.232 37.500 2.27 0.00 0.00 1.85
6778 8650 5.183713 TGCCCTAGTGTCTTGATGAATTTTG 59.816 40.000 0.00 0.00 0.00 2.44
6779 8651 5.183904 GCCCTAGTGTCTTGATGAATTTTGT 59.816 40.000 0.00 0.00 0.00 2.83
6780 8652 6.615088 CCCTAGTGTCTTGATGAATTTTGTG 58.385 40.000 0.00 0.00 0.00 3.33
6781 8653 6.207417 CCCTAGTGTCTTGATGAATTTTGTGT 59.793 38.462 0.00 0.00 0.00 3.72
6782 8654 7.080099 CCTAGTGTCTTGATGAATTTTGTGTG 58.920 38.462 0.00 0.00 0.00 3.82
6783 8655 6.455360 AGTGTCTTGATGAATTTTGTGTGT 57.545 33.333 0.00 0.00 0.00 3.72
6784 8656 6.267817 AGTGTCTTGATGAATTTTGTGTGTG 58.732 36.000 0.00 0.00 0.00 3.82
6785 8657 6.095300 AGTGTCTTGATGAATTTTGTGTGTGA 59.905 34.615 0.00 0.00 0.00 3.58
6787 8659 7.436080 GTGTCTTGATGAATTTTGTGTGTGAAT 59.564 33.333 0.00 0.00 0.00 2.57
6788 8660 8.628280 TGTCTTGATGAATTTTGTGTGTGAATA 58.372 29.630 0.00 0.00 0.00 1.75
6802 8676 5.813672 GTGTGTGAATAGCCCTTTTCGTATA 59.186 40.000 0.00 0.00 0.00 1.47
6803 8677 6.482308 GTGTGTGAATAGCCCTTTTCGTATAT 59.518 38.462 0.00 0.00 0.00 0.86
6827 8701 1.075601 TGGGATGGAGTGGCTTCTTT 58.924 50.000 0.00 0.00 0.00 2.52
6832 8706 3.942115 GGATGGAGTGGCTTCTTTAAGTC 59.058 47.826 0.00 0.00 37.86 3.01
6838 8712 4.583871 AGTGGCTTCTTTAAGTCTCATGG 58.416 43.478 0.00 0.00 38.21 3.66
6843 8717 3.634397 TCTTTAAGTCTCATGGGCCTG 57.366 47.619 4.53 0.24 0.00 4.85
6861 8735 2.485124 CCTGCCTTTAGGATGAGCTGAG 60.485 54.545 0.00 0.00 40.42 3.35
6866 8740 3.551863 CCTTTAGGATGAGCTGAGCGTAG 60.552 52.174 0.00 0.00 37.39 3.51
6917 8959 8.693625 ACTACTAGGTTAAATTAGCTCGATTGT 58.306 33.333 0.00 0.00 0.00 2.71
6978 9044 1.482593 CTCGATTGCAAGGAGTAGGGT 59.517 52.381 17.74 0.00 0.00 4.34
7020 9086 6.894654 TCCATGGAGCCTGTTATTTTAATTCA 59.105 34.615 11.44 0.00 0.00 2.57
7072 9143 7.339207 TCTGAAAAGAAACATACACGTTTACG 58.661 34.615 0.00 0.00 39.17 3.18
7076 9147 4.240096 AGAAACATACACGTTTACGAGGG 58.760 43.478 9.53 1.07 39.17 4.30
7085 9156 4.022416 ACACGTTTACGAGGGTGTAATGTA 60.022 41.667 9.53 0.00 41.46 2.29
7086 9157 4.324402 CACGTTTACGAGGGTGTAATGTAC 59.676 45.833 9.53 0.00 43.02 2.90
7184 9413 5.874810 AGAAGGCACAAAGTTTTTCCTTTTC 59.125 36.000 11.80 3.97 34.40 2.29
7187 9416 4.935205 GGCACAAAGTTTTTCCTTTTCTGT 59.065 37.500 0.00 0.00 32.42 3.41
7364 9605 2.568956 TCAGGCTGCTGAGTCATTTACT 59.431 45.455 10.34 0.00 42.80 2.24
7421 9662 0.520404 GTCACAACTGCAGCTCCATG 59.480 55.000 15.27 7.99 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.566331 ACTCCCTCCATTCAGAAATATATGATA 57.434 33.333 0.00 0.00 0.00 2.15
47 48 8.460317 ACTCCCTCCATTCAGAAATATATGAT 57.540 34.615 0.00 0.00 0.00 2.45
48 49 7.878621 ACTCCCTCCATTCAGAAATATATGA 57.121 36.000 0.00 0.00 0.00 2.15
49 50 9.442047 GTTACTCCCTCCATTCAGAAATATATG 57.558 37.037 0.00 0.00 0.00 1.78
50 51 9.170890 TGTTACTCCCTCCATTCAGAAATATAT 57.829 33.333 0.00 0.00 0.00 0.86
51 52 8.561536 TGTTACTCCCTCCATTCAGAAATATA 57.438 34.615 0.00 0.00 0.00 0.86
52 53 7.451731 TGTTACTCCCTCCATTCAGAAATAT 57.548 36.000 0.00 0.00 0.00 1.28
53 54 6.884472 TGTTACTCCCTCCATTCAGAAATA 57.116 37.500 0.00 0.00 0.00 1.40
54 55 5.779241 TGTTACTCCCTCCATTCAGAAAT 57.221 39.130 0.00 0.00 0.00 2.17
55 56 5.779241 ATGTTACTCCCTCCATTCAGAAA 57.221 39.130 0.00 0.00 0.00 2.52
56 57 5.779241 AATGTTACTCCCTCCATTCAGAA 57.221 39.130 0.00 0.00 0.00 3.02
57 58 5.779241 AAATGTTACTCCCTCCATTCAGA 57.221 39.130 0.00 0.00 0.00 3.27
58 59 7.393234 TGTTAAAATGTTACTCCCTCCATTCAG 59.607 37.037 0.00 0.00 0.00 3.02
59 60 7.235079 TGTTAAAATGTTACTCCCTCCATTCA 58.765 34.615 0.00 0.00 0.00 2.57
60 61 7.696992 TGTTAAAATGTTACTCCCTCCATTC 57.303 36.000 0.00 0.00 0.00 2.67
61 62 7.728532 AGTTGTTAAAATGTTACTCCCTCCATT 59.271 33.333 0.00 0.00 0.00 3.16
62 63 7.238710 AGTTGTTAAAATGTTACTCCCTCCAT 58.761 34.615 0.00 0.00 0.00 3.41
63 64 6.607019 AGTTGTTAAAATGTTACTCCCTCCA 58.393 36.000 0.00 0.00 0.00 3.86
137 138 8.598509 TTTTTGACAAATTTTGCGAAAGAATG 57.401 26.923 9.04 6.35 0.00 2.67
138 139 9.786105 AATTTTTGACAAATTTTGCGAAAGAAT 57.214 22.222 9.04 5.78 0.00 2.40
144 145 9.430838 CAACATAATTTTTGACAAATTTTGCGA 57.569 25.926 9.04 0.11 34.28 5.10
166 167 9.356433 CAAGTTTGCATCAATATTATGTCAACA 57.644 29.630 0.00 0.00 0.00 3.33
167 168 9.357652 ACAAGTTTGCATCAATATTATGTCAAC 57.642 29.630 0.00 1.99 0.00 3.18
168 169 9.571810 GACAAGTTTGCATCAATATTATGTCAA 57.428 29.630 0.00 0.88 0.00 3.18
170 171 9.571810 TTGACAAGTTTGCATCAATATTATGTC 57.428 29.630 0.00 0.00 0.00 3.06
177 178 9.107177 ACAAATTTTGACAAGTTTGCATCAATA 57.893 25.926 15.81 0.00 41.21 1.90
178 179 7.911205 CACAAATTTTGACAAGTTTGCATCAAT 59.089 29.630 15.81 0.84 41.21 2.57
179 180 7.118825 TCACAAATTTTGACAAGTTTGCATCAA 59.881 29.630 15.81 0.00 41.21 2.57
180 181 6.592994 TCACAAATTTTGACAAGTTTGCATCA 59.407 30.769 15.81 0.00 41.21 3.07
181 182 7.002816 TCACAAATTTTGACAAGTTTGCATC 57.997 32.000 15.81 0.00 41.21 3.91
182 183 6.981762 TCACAAATTTTGACAAGTTTGCAT 57.018 29.167 15.81 6.69 41.21 3.96
183 184 6.370994 ACATCACAAATTTTGACAAGTTTGCA 59.629 30.769 15.81 11.93 41.21 4.08
184 185 6.683708 CACATCACAAATTTTGACAAGTTTGC 59.316 34.615 15.81 0.00 41.21 3.68
185 186 7.741198 ACACATCACAAATTTTGACAAGTTTG 58.259 30.769 15.81 18.79 42.49 2.93
186 187 7.903995 ACACATCACAAATTTTGACAAGTTT 57.096 28.000 15.81 0.60 0.00 2.66
187 188 8.994429 TTACACATCACAAATTTTGACAAGTT 57.006 26.923 15.81 0.00 0.00 2.66
188 189 8.994429 TTTACACATCACAAATTTTGACAAGT 57.006 26.923 15.81 6.26 0.00 3.16
272 273 5.126384 ACTTGTCAAAATCCCGACAGAAAAA 59.874 36.000 0.00 0.00 42.73 1.94
273 274 4.642885 ACTTGTCAAAATCCCGACAGAAAA 59.357 37.500 0.00 0.00 42.73 2.29
274 275 4.204012 ACTTGTCAAAATCCCGACAGAAA 58.796 39.130 0.00 0.00 42.73 2.52
275 276 3.815809 ACTTGTCAAAATCCCGACAGAA 58.184 40.909 0.00 0.00 42.73 3.02
276 277 3.485463 ACTTGTCAAAATCCCGACAGA 57.515 42.857 0.00 0.00 42.73 3.41
277 278 4.290155 CAAACTTGTCAAAATCCCGACAG 58.710 43.478 0.00 0.00 42.73 3.51
278 279 3.490078 GCAAACTTGTCAAAATCCCGACA 60.490 43.478 0.00 0.00 40.30 4.35
279 280 3.049912 GCAAACTTGTCAAAATCCCGAC 58.950 45.455 0.00 0.00 0.00 4.79
280 281 2.690497 TGCAAACTTGTCAAAATCCCGA 59.310 40.909 0.00 0.00 0.00 5.14
281 282 3.090952 TGCAAACTTGTCAAAATCCCG 57.909 42.857 0.00 0.00 0.00 5.14
282 283 4.441792 ACTTGCAAACTTGTCAAAATCCC 58.558 39.130 0.00 0.00 0.00 3.85
283 284 6.146021 CCATACTTGCAAACTTGTCAAAATCC 59.854 38.462 0.00 0.00 0.00 3.01
284 285 6.701400 ACCATACTTGCAAACTTGTCAAAATC 59.299 34.615 0.00 0.00 0.00 2.17
285 286 6.479660 CACCATACTTGCAAACTTGTCAAAAT 59.520 34.615 0.00 0.00 0.00 1.82
286 287 5.809562 CACCATACTTGCAAACTTGTCAAAA 59.190 36.000 0.00 0.00 0.00 2.44
287 288 5.126222 TCACCATACTTGCAAACTTGTCAAA 59.874 36.000 0.00 0.00 0.00 2.69
288 289 4.642437 TCACCATACTTGCAAACTTGTCAA 59.358 37.500 0.00 0.00 0.00 3.18
289 290 4.203226 TCACCATACTTGCAAACTTGTCA 58.797 39.130 0.00 0.00 0.00 3.58
290 291 4.829064 TCACCATACTTGCAAACTTGTC 57.171 40.909 0.00 0.00 0.00 3.18
291 292 4.584325 ACATCACCATACTTGCAAACTTGT 59.416 37.500 0.00 0.00 0.00 3.16
292 293 5.125100 ACATCACCATACTTGCAAACTTG 57.875 39.130 0.00 0.00 0.00 3.16
293 294 8.574251 TTATACATCACCATACTTGCAAACTT 57.426 30.769 0.00 0.00 0.00 2.66
294 295 8.574251 TTTATACATCACCATACTTGCAAACT 57.426 30.769 0.00 0.00 0.00 2.66
295 296 9.801873 ATTTTATACATCACCATACTTGCAAAC 57.198 29.630 0.00 0.00 0.00 2.93
298 299 9.800433 CAAATTTTATACATCACCATACTTGCA 57.200 29.630 0.00 0.00 0.00 4.08
299 300 9.801873 ACAAATTTTATACATCACCATACTTGC 57.198 29.630 0.00 0.00 0.00 4.01
334 335 9.858247 CCACGTACAACAATATTTATACATCAC 57.142 33.333 0.00 0.00 0.00 3.06
335 336 8.552865 GCCACGTACAACAATATTTATACATCA 58.447 33.333 0.00 0.00 0.00 3.07
336 337 8.552865 TGCCACGTACAACAATATTTATACATC 58.447 33.333 0.00 0.00 0.00 3.06
337 338 8.439993 TGCCACGTACAACAATATTTATACAT 57.560 30.769 0.00 0.00 0.00 2.29
338 339 7.845066 TGCCACGTACAACAATATTTATACA 57.155 32.000 0.00 0.00 0.00 2.29
339 340 9.377383 GATTGCCACGTACAACAATATTTATAC 57.623 33.333 5.41 0.00 33.07 1.47
340 341 8.561212 GGATTGCCACGTACAACAATATTTATA 58.439 33.333 5.41 0.00 33.07 0.98
406 411 6.108687 ACTTTCAAGCTCAATCGATGTGATA 58.891 36.000 0.00 0.00 35.84 2.15
416 421 6.377327 TCGAGAAAAACTTTCAAGCTCAAT 57.623 33.333 2.25 0.00 0.00 2.57
439 444 7.320499 CGTTCTTTCGCATTTACAGAAAATT 57.680 32.000 0.00 0.00 35.54 1.82
454 459 2.325509 AAAATTCCGGCGTTCTTTCG 57.674 45.000 6.01 0.00 0.00 3.46
455 460 3.910170 GTGTAAAATTCCGGCGTTCTTTC 59.090 43.478 6.01 0.00 0.00 2.62
456 461 3.607542 CGTGTAAAATTCCGGCGTTCTTT 60.608 43.478 6.01 2.55 0.00 2.52
457 462 2.096119 CGTGTAAAATTCCGGCGTTCTT 60.096 45.455 6.01 0.00 0.00 2.52
458 463 1.461897 CGTGTAAAATTCCGGCGTTCT 59.538 47.619 6.01 0.00 0.00 3.01
459 464 1.460359 TCGTGTAAAATTCCGGCGTTC 59.540 47.619 6.01 0.00 0.00 3.95
460 465 1.461897 CTCGTGTAAAATTCCGGCGTT 59.538 47.619 6.01 0.00 0.00 4.84
462 467 0.247537 GCTCGTGTAAAATTCCGGCG 60.248 55.000 0.00 0.00 0.00 6.46
463 468 1.084289 AGCTCGTGTAAAATTCCGGC 58.916 50.000 0.00 0.00 0.00 6.13
464 469 2.093783 GTCAGCTCGTGTAAAATTCCGG 59.906 50.000 0.00 0.00 0.00 5.14
465 470 2.993899 AGTCAGCTCGTGTAAAATTCCG 59.006 45.455 0.00 0.00 0.00 4.30
466 471 5.147162 CAAAGTCAGCTCGTGTAAAATTCC 58.853 41.667 0.00 0.00 0.00 3.01
512 531 0.735978 TTATGTGTGCCGACTGAGCG 60.736 55.000 0.00 0.00 0.00 5.03
513 532 1.438651 TTTATGTGTGCCGACTGAGC 58.561 50.000 0.00 0.00 0.00 4.26
514 533 2.609459 GGATTTATGTGTGCCGACTGAG 59.391 50.000 0.00 0.00 0.00 3.35
515 534 2.236146 AGGATTTATGTGTGCCGACTGA 59.764 45.455 0.00 0.00 0.00 3.41
611 634 4.740695 GTCTATGAGAGACGGTTAATGTGC 59.259 45.833 0.00 0.00 45.16 4.57
623 646 5.306937 TGGTGTTTTCCTTGTCTATGAGAGA 59.693 40.000 0.00 0.00 0.00 3.10
666 689 1.981533 GCTTGCATGCTCTCGTTTTTC 59.018 47.619 20.33 0.00 0.00 2.29
671 694 0.953727 TTTTGCTTGCATGCTCTCGT 59.046 45.000 23.31 0.00 0.00 4.18
672 695 1.334054 GTTTTGCTTGCATGCTCTCG 58.666 50.000 23.31 5.54 0.00 4.04
740 938 3.677689 ATTCCCACCTCCCTCCCCC 62.678 68.421 0.00 0.00 0.00 5.40
741 939 2.044620 ATTCCCACCTCCCTCCCC 59.955 66.667 0.00 0.00 0.00 4.81
742 940 1.307866 TGATTCCCACCTCCCTCCC 60.308 63.158 0.00 0.00 0.00 4.30
789 987 1.452108 GGTATGGTGGCAGACTGGC 60.452 63.158 21.54 21.54 44.03 4.85
790 988 0.548031 ATGGTATGGTGGCAGACTGG 59.452 55.000 4.26 0.00 0.00 4.00
791 989 3.557898 GGATATGGTATGGTGGCAGACTG 60.558 52.174 0.00 0.00 0.00 3.51
792 990 2.639839 GGATATGGTATGGTGGCAGACT 59.360 50.000 0.00 0.00 0.00 3.24
793 991 2.371841 TGGATATGGTATGGTGGCAGAC 59.628 50.000 0.00 0.00 0.00 3.51
794 992 2.700354 TGGATATGGTATGGTGGCAGA 58.300 47.619 0.00 0.00 0.00 4.26
826 1024 3.272285 TGAATTAGGACAGGAGAGAGGGA 59.728 47.826 0.00 0.00 0.00 4.20
909 1126 4.849329 GTGGCGACGGCGTAGGAG 62.849 72.222 21.24 10.61 41.24 3.69
956 1181 4.906792 GCCGAGCTAGCTGGCTGG 62.907 72.222 33.14 27.19 45.40 4.85
1311 1540 0.961753 CCCAGGGAAACAAACAGAGC 59.038 55.000 0.00 0.00 0.00 4.09
1365 1596 1.746991 GCGGGAGGAGCAGGAAAAG 60.747 63.158 0.00 0.00 34.19 2.27
1546 1777 0.390860 TTGCACAAAATTCCCCACGG 59.609 50.000 0.00 0.00 0.00 4.94
1665 1901 5.976458 AGAGATGAGAAGTTGAGAACATCC 58.024 41.667 0.00 0.00 36.01 3.51
1688 1924 1.890894 GCTCGGAGCTCCTACACAA 59.109 57.895 29.73 7.76 38.45 3.33
1845 2081 3.992943 ATTTACCAATCCGACACCAGA 57.007 42.857 0.00 0.00 0.00 3.86
1911 2171 1.666189 TGATCGAAAAACACACACGCA 59.334 42.857 0.00 0.00 0.00 5.24
1913 2173 3.225548 CCATGATCGAAAAACACACACG 58.774 45.455 0.00 0.00 0.00 4.49
1918 2178 4.414852 CACATCCCATGATCGAAAAACAC 58.585 43.478 0.00 0.00 0.00 3.32
1919 2179 3.443329 CCACATCCCATGATCGAAAAACA 59.557 43.478 0.00 0.00 0.00 2.83
1920 2180 3.694072 TCCACATCCCATGATCGAAAAAC 59.306 43.478 0.00 0.00 0.00 2.43
1921 2181 3.961849 TCCACATCCCATGATCGAAAAA 58.038 40.909 0.00 0.00 0.00 1.94
1941 2201 4.805219 AGCCATGACCAAACGTTTAATTC 58.195 39.130 14.20 10.51 0.00 2.17
1962 2222 8.119226 CGAGCTCAAGTCCATCTAAAAATTTAG 58.881 37.037 15.40 6.59 41.10 1.85
2081 2342 0.380733 CAGCCTATCGCACGTACAGA 59.619 55.000 0.00 0.00 41.38 3.41
2161 2422 2.128771 ATTCCTTGATGGGACCAACG 57.871 50.000 0.00 0.00 34.78 4.10
2162 2423 4.159693 GGTAAATTCCTTGATGGGACCAAC 59.840 45.833 0.00 0.00 34.78 3.77
2200 2461 3.923017 AAAATCCAGAGCAAAACCTCG 57.077 42.857 0.00 0.00 36.95 4.63
2234 2497 6.662755 TCTCGTAGTAGGGAAATGTAAGGTA 58.337 40.000 0.00 0.00 0.00 3.08
2240 2503 5.833667 TCATGATCTCGTAGTAGGGAAATGT 59.166 40.000 0.00 0.00 0.00 2.71
2340 2629 4.074970 ACCAATCAAATCGAAGAAGCACT 58.925 39.130 0.00 0.00 43.58 4.40
2386 2675 6.650390 ACAAATGCAAAACAATCAATCCCTAC 59.350 34.615 0.00 0.00 0.00 3.18
2404 2693 2.206576 ACTCCTGGGAGAACAAATGC 57.793 50.000 21.86 0.00 44.53 3.56
2429 2718 6.032775 GCAAAACATCTTATGACGTTCACATG 59.967 38.462 0.00 0.00 27.70 3.21
2487 2781 4.964593 ACACCAGTGTAATACCGAAGTTT 58.035 39.130 0.54 0.00 42.90 2.66
2488 2782 4.612264 ACACCAGTGTAATACCGAAGTT 57.388 40.909 0.54 0.00 42.90 2.66
2492 2789 4.958509 TGAAAACACCAGTGTAATACCGA 58.041 39.130 3.43 0.00 44.13 4.69
2507 2804 8.352201 CCAACAAAAGACTCTCATATGAAAACA 58.648 33.333 6.90 0.00 0.00 2.83
2520 2817 5.278315 GGACACCAATACCAACAAAAGACTC 60.278 44.000 0.00 0.00 0.00 3.36
2523 2820 3.892588 GGGACACCAATACCAACAAAAGA 59.107 43.478 0.00 0.00 36.50 2.52
2525 2822 3.643237 TGGGACACCAATACCAACAAAA 58.357 40.909 0.00 0.00 45.87 2.44
2550 2847 9.361315 ACAGAACACAAAATACAACTAAAAACC 57.639 29.630 0.00 0.00 0.00 3.27
2556 2853 8.865001 GCAAAAACAGAACACAAAATACAACTA 58.135 29.630 0.00 0.00 0.00 2.24
2565 2862 4.083003 AGTCGAGCAAAAACAGAACACAAA 60.083 37.500 0.00 0.00 0.00 2.83
2632 2939 2.423185 GCAGCCTGCAATGTACAACATA 59.577 45.455 12.82 0.00 44.26 2.29
2635 2942 3.406682 GCAGCCTGCAATGTACAAC 57.593 52.632 12.82 0.00 44.26 3.32
2650 2957 1.096386 GGCAGATCAGGAAGCAGCAG 61.096 60.000 0.00 0.00 0.00 4.24
2706 3013 0.169230 AAGCGTGCGTTTGTTGTGAA 59.831 45.000 0.00 0.00 0.00 3.18
2781 3088 6.038825 TGCATCAGTTGGTTAAATTATACCCG 59.961 38.462 6.47 0.00 33.34 5.28
2888 3195 4.662468 AGACCAGCATAGACATGTACTG 57.338 45.455 0.00 1.94 34.40 2.74
2901 3208 4.422984 ACTTAACCCTAACTAGACCAGCA 58.577 43.478 0.00 0.00 0.00 4.41
2924 3231 9.535878 GAATCTCCCACTAAGTATTCACTTAAG 57.464 37.037 0.00 0.00 44.64 1.85
2943 3250 1.636003 ACCAACTTCCTGGGAATCTCC 59.364 52.381 2.28 0.00 41.16 3.71
3030 3338 5.550290 CCAAATAGGCAAACTCAAAATGGT 58.450 37.500 0.00 0.00 0.00 3.55
3107 3415 7.814107 TCATCAGTTAACCAAAATCTTGAATGC 59.186 33.333 0.88 0.00 34.14 3.56
3143 3452 0.887933 GTGGGCATGGACGATTTTGT 59.112 50.000 0.00 0.00 0.00 2.83
3343 3685 6.110033 TGAAACACTTTTGTCTGCACTACTA 58.890 36.000 0.00 0.00 33.55 1.82
3470 5262 6.865834 AGATAAGTCTGACAGAAATCCACT 57.134 37.500 6.76 0.00 32.13 4.00
3578 5371 1.680249 GCTAAGCTTAGGCACCTGCTT 60.680 52.381 29.93 15.99 45.94 3.91
3671 5464 6.869206 AAGAACTACTACTAAGCCATTGGA 57.131 37.500 6.95 0.00 0.00 3.53
3718 5512 2.400896 TTTCGCTTTTCGTGCTGGCC 62.401 55.000 0.00 0.00 39.67 5.36
3719 5513 0.387239 ATTTCGCTTTTCGTGCTGGC 60.387 50.000 0.00 0.00 39.67 4.85
3720 5514 1.069296 TCATTTCGCTTTTCGTGCTGG 60.069 47.619 0.00 0.00 39.67 4.85
3723 5517 1.327507 GGTCATTTCGCTTTTCGTGC 58.672 50.000 0.00 0.00 39.67 5.34
3726 5520 2.979813 CCTTTGGTCATTTCGCTTTTCG 59.020 45.455 0.00 0.00 40.15 3.46
3727 5521 3.005367 TCCCTTTGGTCATTTCGCTTTTC 59.995 43.478 0.00 0.00 0.00 2.29
3728 5522 2.962421 TCCCTTTGGTCATTTCGCTTTT 59.038 40.909 0.00 0.00 0.00 2.27
3729 5523 2.593026 TCCCTTTGGTCATTTCGCTTT 58.407 42.857 0.00 0.00 0.00 3.51
3730 5524 2.286365 TCCCTTTGGTCATTTCGCTT 57.714 45.000 0.00 0.00 0.00 4.68
3731 5525 2.493278 CAATCCCTTTGGTCATTTCGCT 59.507 45.455 0.00 0.00 0.00 4.93
3732 5526 2.879826 CAATCCCTTTGGTCATTTCGC 58.120 47.619 0.00 0.00 0.00 4.70
3742 5536 1.351076 AAACAGCCCCAATCCCTTTG 58.649 50.000 0.00 0.00 34.93 2.77
3743 5537 1.699083 CAAAACAGCCCCAATCCCTTT 59.301 47.619 0.00 0.00 0.00 3.11
3744 5538 1.351076 CAAAACAGCCCCAATCCCTT 58.649 50.000 0.00 0.00 0.00 3.95
3745 5539 0.545071 CCAAAACAGCCCCAATCCCT 60.545 55.000 0.00 0.00 0.00 4.20
3746 5540 1.982430 CCAAAACAGCCCCAATCCC 59.018 57.895 0.00 0.00 0.00 3.85
3747 5541 1.296392 GCCAAAACAGCCCCAATCC 59.704 57.895 0.00 0.00 0.00 3.01
3748 5542 0.614812 ATGCCAAAACAGCCCCAATC 59.385 50.000 0.00 0.00 0.00 2.67
3749 5543 0.614812 GATGCCAAAACAGCCCCAAT 59.385 50.000 0.00 0.00 0.00 3.16
3750 5544 0.762082 TGATGCCAAAACAGCCCCAA 60.762 50.000 0.00 0.00 0.00 4.12
3826 5620 6.237887 TGATCATGATAAGGATGTGTCACA 57.762 37.500 8.54 8.40 0.00 3.58
3861 5655 5.740569 CGGTGAATATGCAAAGAAGATGTTG 59.259 40.000 0.00 0.00 0.00 3.33
3945 5739 4.467795 TCCAAACACAGACAAAATGGGAAA 59.532 37.500 0.00 0.00 0.00 3.13
4088 5882 6.090628 TCAGCACAATGAGAAACAAAACAAAC 59.909 34.615 0.00 0.00 0.00 2.93
4127 5927 5.827797 TGAAAAGTTTGTGCTCTGGAAGTAT 59.172 36.000 0.00 0.00 33.76 2.12
4432 6232 6.723977 ACCTCTATTTTGTGCTTCCCATTTAA 59.276 34.615 0.00 0.00 0.00 1.52
4470 6270 2.555757 ACTGCAATTGCTTTGAGTCCTC 59.444 45.455 29.37 0.00 42.66 3.71
4527 6327 5.510861 CCTTCGTCTTCCCTCACTTTCTTTA 60.511 44.000 0.00 0.00 0.00 1.85
4533 6333 1.718280 ACCTTCGTCTTCCCTCACTT 58.282 50.000 0.00 0.00 0.00 3.16
4536 6336 4.693042 TTAAAACCTTCGTCTTCCCTCA 57.307 40.909 0.00 0.00 0.00 3.86
4546 6357 8.958175 TTTTGCTGTATGTATTAAAACCTTCG 57.042 30.769 0.00 0.00 0.00 3.79
4678 6491 2.358898 GCCTGGTGCCATTACTTGTATG 59.641 50.000 0.00 0.00 0.00 2.39
4692 6505 2.955660 TCCTGTTTTTGTAAGCCTGGTG 59.044 45.455 0.00 0.00 0.00 4.17
4874 6695 3.771577 AAGGTACACTTGAACCCTGAG 57.228 47.619 0.00 0.00 38.21 3.35
4923 6744 1.528129 CTTTTCGAGCCTGCCTTTCT 58.472 50.000 0.00 0.00 0.00 2.52
5046 6867 0.251916 TCACCTGGTAGCCAAATCCG 59.748 55.000 0.00 0.00 30.80 4.18
5216 7077 3.440173 ACAACATGAATAGCGAAAGGTGG 59.560 43.478 0.00 0.00 44.53 4.61
5286 7147 2.977772 TGCCTTTTCTGTTTGGTTGG 57.022 45.000 0.00 0.00 0.00 3.77
5441 7304 6.406370 TCCATGTTTGGTACTCTATCTGTTG 58.594 40.000 0.00 0.00 44.06 3.33
5715 7584 3.332034 GAAGCCTGCTTGATTTTGCATT 58.668 40.909 9.48 0.00 38.59 3.56
5814 7683 5.733620 ACTGCATTGAATTGAATGACCTT 57.266 34.783 20.10 0.00 35.65 3.50
6079 7951 0.036732 GGAGGACCTGTGCACATGAA 59.963 55.000 26.20 1.55 0.00 2.57
6105 7977 6.704493 GCGGGATGTGATAGATAAACAAGTTA 59.296 38.462 0.00 0.00 0.00 2.24
6234 8106 7.364762 CCAGCTAGAAGGAAGAATTAGTTACCA 60.365 40.741 0.00 0.00 0.00 3.25
6252 8124 4.651503 CCAGTCCTAAGAAATCCAGCTAGA 59.348 45.833 0.00 0.00 0.00 2.43
6286 8158 7.812191 CCAGGAACGAATTAACAAAAATCATGA 59.188 33.333 0.00 0.00 0.00 3.07
6524 8396 1.200020 GCCAGAAGAAACAATGGGACG 59.800 52.381 0.00 0.00 33.23 4.79
6546 8418 0.319555 CGAAGACGACACATGGTGGT 60.320 55.000 0.00 0.00 41.53 4.16
6562 8434 1.493854 ATACACAAGCCCCCACCGAA 61.494 55.000 0.00 0.00 0.00 4.30
6632 8504 1.067213 TGCTACAACTATGCTGCGACA 60.067 47.619 0.00 0.00 32.76 4.35
6742 8614 2.616842 CACTAGGGCACGTCAAAACTTT 59.383 45.455 0.00 0.00 0.00 2.66
6743 8615 2.218603 CACTAGGGCACGTCAAAACTT 58.781 47.619 0.00 0.00 0.00 2.66
6745 8617 1.529865 GACACTAGGGCACGTCAAAAC 59.470 52.381 0.00 0.00 0.00 2.43
6778 8650 2.812011 ACGAAAAGGGCTATTCACACAC 59.188 45.455 0.00 0.00 0.00 3.82
6779 8651 3.134574 ACGAAAAGGGCTATTCACACA 57.865 42.857 0.00 0.00 0.00 3.72
6780 8652 7.012044 ACAATATACGAAAAGGGCTATTCACAC 59.988 37.037 0.00 0.00 0.00 3.82
6781 8653 7.051623 ACAATATACGAAAAGGGCTATTCACA 58.948 34.615 0.00 0.00 0.00 3.58
6782 8654 7.492352 ACAATATACGAAAAGGGCTATTCAC 57.508 36.000 0.00 0.00 0.00 3.18
6783 8655 9.214957 CATACAATATACGAAAAGGGCTATTCA 57.785 33.333 0.00 0.00 0.00 2.57
6784 8656 8.665685 CCATACAATATACGAAAAGGGCTATTC 58.334 37.037 0.00 0.00 0.00 1.75
6785 8657 7.610305 CCCATACAATATACGAAAAGGGCTATT 59.390 37.037 0.00 0.00 0.00 1.73
6787 8659 6.270463 TCCCATACAATATACGAAAAGGGCTA 59.730 38.462 0.00 0.00 32.63 3.93
6788 8660 5.072600 TCCCATACAATATACGAAAAGGGCT 59.927 40.000 0.00 0.00 32.63 5.19
6802 8676 2.138542 AGCCACTCCATCCCATACAAT 58.861 47.619 0.00 0.00 0.00 2.71
6803 8677 1.595311 AGCCACTCCATCCCATACAA 58.405 50.000 0.00 0.00 0.00 2.41
6827 8701 0.621571 AGGCAGGCCCATGAGACTTA 60.622 55.000 6.70 0.00 36.58 2.24
6832 8706 0.466922 CCTAAAGGCAGGCCCATGAG 60.467 60.000 6.70 0.00 36.58 2.90
6838 8712 0.821301 GCTCATCCTAAAGGCAGGCC 60.821 60.000 0.97 0.97 35.49 5.19
6843 8717 1.592064 GCTCAGCTCATCCTAAAGGC 58.408 55.000 0.00 0.00 34.44 4.35
6861 8735 6.474427 TGTTGTTGATGTAGTAATAGCTACGC 59.526 38.462 0.00 0.00 43.03 4.42
6900 8942 6.640518 ACTCCTCACAATCGAGCTAATTTAA 58.359 36.000 0.00 0.00 0.00 1.52
6917 8959 7.024340 GTAACATGTTACGATCTACTCCTCA 57.976 40.000 27.96 0.00 36.47 3.86
6967 9033 2.375509 CCTCCAAAACACCCTACTCCTT 59.624 50.000 0.00 0.00 0.00 3.36
6978 9044 1.072505 GAGCCCGTCCTCCAAAACA 59.927 57.895 0.00 0.00 0.00 2.83
7072 9143 6.346096 ACACACATATGTACATTACACCCTC 58.654 40.000 14.77 0.00 42.23 4.30
7143 9372 3.686726 CCTTCTTAGCACATGAAGTCCAC 59.313 47.826 0.00 0.00 36.93 4.02
7224 9453 7.987750 ACCAAACACATAATGTACACATGTA 57.012 32.000 19.37 3.07 42.31 2.29
7294 9534 8.212312 TCCATGTAGGGCGACTTTAAAAATATA 58.788 33.333 0.00 0.00 38.24 0.86
7295 9535 7.057894 TCCATGTAGGGCGACTTTAAAAATAT 58.942 34.615 0.00 0.00 38.24 1.28
7296 9536 6.416415 TCCATGTAGGGCGACTTTAAAAATA 58.584 36.000 0.00 0.00 38.24 1.40
7297 9537 5.258051 TCCATGTAGGGCGACTTTAAAAAT 58.742 37.500 0.00 0.00 38.24 1.82
7298 9538 4.653868 TCCATGTAGGGCGACTTTAAAAA 58.346 39.130 0.00 0.00 38.24 1.94
7299 9539 4.258543 CTCCATGTAGGGCGACTTTAAAA 58.741 43.478 0.00 0.00 38.24 1.52
7300 9540 3.869065 CTCCATGTAGGGCGACTTTAAA 58.131 45.455 0.00 0.00 38.24 1.52
7301 9541 2.419574 GCTCCATGTAGGGCGACTTTAA 60.420 50.000 0.00 0.00 38.24 1.52
7302 9542 1.138266 GCTCCATGTAGGGCGACTTTA 59.862 52.381 0.00 0.00 38.24 1.85
7303 9543 0.107654 GCTCCATGTAGGGCGACTTT 60.108 55.000 0.00 0.00 38.24 2.66
7304 9544 0.978146 AGCTCCATGTAGGGCGACTT 60.978 55.000 0.00 0.00 38.25 3.01
7305 9545 1.381872 AGCTCCATGTAGGGCGACT 60.382 57.895 0.00 0.00 38.25 4.18
7306 9546 1.068250 GAGCTCCATGTAGGGCGAC 59.932 63.158 0.87 0.00 38.25 5.19
7364 9605 4.215399 CAGCCATTTTAAAGTCGACTGGAA 59.785 41.667 20.85 13.39 0.00 3.53
7421 9662 3.192633 ACCAACTTTGTGAAACTGTGTCC 59.807 43.478 0.00 0.00 38.04 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.