Multiple sequence alignment - TraesCS1A01G235200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G235200 chr1A 100.000 8258 0 0 1 8258 415634016 415642273 0.000000e+00 15250.0
1 TraesCS1A01G235200 chr1A 92.222 90 7 0 4031 4120 568391288 568391199 2.420000e-25 128.0
2 TraesCS1A01G235200 chr1B 93.226 5757 261 46 1744 7456 439442450 439448121 0.000000e+00 8351.0
3 TraesCS1A01G235200 chr1B 89.273 811 36 16 7476 8253 439448107 439448899 0.000000e+00 968.0
4 TraesCS1A01G235200 chr1B 86.932 176 21 2 998 1172 439442037 439442211 6.540000e-46 196.0
5 TraesCS1A01G235200 chr1B 85.567 97 14 0 4727 4823 109734378 109734474 1.470000e-17 102.0
6 TraesCS1A01G235200 chr1B 95.652 46 2 0 3296 3341 491083443 491083398 3.200000e-09 75.0
7 TraesCS1A01G235200 chr1B 90.741 54 1 3 3296 3346 481710757 481710809 1.490000e-07 69.4
8 TraesCS1A01G235200 chr1D 95.233 3084 90 12 3666 6720 326158990 326162045 0.000000e+00 4828.0
9 TraesCS1A01G235200 chr1D 96.472 1247 43 1 2386 3632 326157744 326158989 0.000000e+00 2058.0
10 TraesCS1A01G235200 chr1D 89.869 1066 69 15 1018 2062 326155842 326156889 0.000000e+00 1334.0
11 TraesCS1A01G235200 chr1D 93.750 688 39 2 6715 7402 326167210 326167893 0.000000e+00 1029.0
12 TraesCS1A01G235200 chr1D 90.342 673 34 18 7585 8253 326167909 326168554 0.000000e+00 854.0
13 TraesCS1A01G235200 chr1D 87.640 178 15 3 794 964 326155527 326155704 5.050000e-47 200.0
14 TraesCS1A01G235200 chr1D 89.583 48 2 3 4085 4131 133947977 133948022 3.220000e-04 58.4
15 TraesCS1A01G235200 chr3A 98.514 740 6 3 1 736 358860003 358860741 0.000000e+00 1301.0
16 TraesCS1A01G235200 chr3A 92.920 452 21 8 4 446 130971314 130970865 0.000000e+00 647.0
17 TraesCS1A01G235200 chr3A 83.834 433 56 11 6070 6496 40356497 40356921 4.640000e-107 399.0
18 TraesCS1A01G235200 chr3A 89.333 75 6 2 1578 1650 475275888 475275814 8.830000e-15 93.5
19 TraesCS1A01G235200 chr3A 95.455 44 2 0 3296 3339 109148066 109148109 4.140000e-08 71.3
20 TraesCS1A01G235200 chr5A 96.070 687 22 4 53 738 544443691 544444373 0.000000e+00 1114.0
21 TraesCS1A01G235200 chr5D 90.679 751 48 15 1 736 243873630 243874373 0.000000e+00 979.0
22 TraesCS1A01G235200 chr5D 92.105 76 4 2 4759 4832 396452403 396452328 1.130000e-18 106.0
23 TraesCS1A01G235200 chr5D 97.872 47 1 0 3296 3342 454102997 454102951 1.910000e-11 82.4
24 TraesCS1A01G235200 chr5D 95.652 46 2 0 3296 3341 184043757 184043802 3.200000e-09 75.0
25 TraesCS1A01G235200 chr2D 90.679 751 47 16 1 736 521335696 521336438 0.000000e+00 977.0
26 TraesCS1A01G235200 chr2D 93.692 428 13 6 4 423 484383682 484383261 5.440000e-176 628.0
27 TraesCS1A01G235200 chr2D 83.871 124 11 4 1501 1624 573363148 573363262 8.760000e-20 110.0
28 TraesCS1A01G235200 chr6D 90.438 753 48 17 1 736 38838192 38838937 0.000000e+00 970.0
29 TraesCS1A01G235200 chr7A 92.793 555 23 11 194 735 700169422 700168872 0.000000e+00 787.0
30 TraesCS1A01G235200 chr7A 91.279 172 7 3 4 175 700170278 700170115 2.320000e-55 228.0
31 TraesCS1A01G235200 chr7A 83.761 117 15 4 4716 4830 627610502 627610616 3.150000e-19 108.0
32 TraesCS1A01G235200 chr3D 90.400 500 31 13 1 488 10715539 10716033 6.990000e-180 641.0
33 TraesCS1A01G235200 chr3D 96.330 327 11 1 410 736 574246741 574246416 3.390000e-148 536.0
34 TraesCS1A01G235200 chr3D 84.065 433 55 10 6070 6496 29697745 29698169 9.980000e-109 405.0
35 TraesCS1A01G235200 chr3D 79.755 326 40 15 2343 2659 29691306 29691614 6.490000e-51 213.0
36 TraesCS1A01G235200 chr3D 90.000 130 5 1 4 133 574247055 574246934 2.390000e-35 161.0
37 TraesCS1A01G235200 chr3D 92.941 85 6 0 4032 4116 473745981 473746065 3.130000e-24 124.0
38 TraesCS1A01G235200 chr3D 88.660 97 9 2 4023 4117 389633226 389633130 5.240000e-22 117.0
39 TraesCS1A01G235200 chr2B 91.489 470 29 8 284 745 704736284 704735818 3.250000e-178 636.0
40 TraesCS1A01G235200 chr2B 93.750 48 3 0 3295 3342 655839617 655839664 1.150000e-08 73.1
41 TraesCS1A01G235200 chr2B 95.349 43 2 0 4 46 704738779 704738737 1.490000e-07 69.4
42 TraesCS1A01G235200 chr4A 88.143 447 43 6 299 736 699799009 699799454 2.640000e-144 523.0
43 TraesCS1A01G235200 chr4A 83.537 164 18 6 1499 1659 161424454 161424297 2.400000e-30 145.0
44 TraesCS1A01G235200 chr4A 90.909 88 8 0 4031 4118 56509340 56509427 1.460000e-22 119.0
45 TraesCS1A01G235200 chr3B 84.235 425 53 10 6070 6488 50914558 50914974 1.290000e-107 401.0
46 TraesCS1A01G235200 chr3B 78.528 326 44 15 2343 2659 50908868 50909176 3.040000e-44 191.0
47 TraesCS1A01G235200 chr3B 91.111 90 7 1 4032 4120 482487800 482487889 4.050000e-23 121.0
48 TraesCS1A01G235200 chr4D 83.537 164 18 5 1499 1659 314590395 314590552 2.400000e-30 145.0
49 TraesCS1A01G235200 chr4D 89.583 96 9 1 4023 4117 107696514 107696609 4.050000e-23 121.0
50 TraesCS1A01G235200 chr4B 83.537 164 18 5 1499 1659 392623623 392623780 2.400000e-30 145.0
51 TraesCS1A01G235200 chr4B 95.652 46 2 0 3296 3341 656649254 656649209 3.200000e-09 75.0
52 TraesCS1A01G235200 chr6A 91.398 93 8 0 4025 4117 604890658 604890750 2.420000e-25 128.0
53 TraesCS1A01G235200 chr6A 83.916 143 9 6 1499 1639 535400492 535400622 3.130000e-24 124.0
54 TraesCS1A01G235200 chr6A 84.314 102 14 2 4727 4827 72524521 72524421 1.900000e-16 99.0
55 TraesCS1A01G235200 chr2A 87.629 97 12 0 4727 4823 657520735 657520831 6.770000e-21 113.0
56 TraesCS1A01G235200 chr7D 83.065 124 12 4 1501 1624 630112266 630112380 4.080000e-18 104.0
57 TraesCS1A01G235200 chr6B 84.158 101 16 0 4727 4827 129450971 129450871 1.900000e-16 99.0
58 TraesCS1A01G235200 chr7B 84.536 97 15 0 4727 4823 327453233 327453137 6.820000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G235200 chr1A 415634016 415642273 8257 False 15250.000000 15250 100.000000 1 8258 1 chr1A.!!$F1 8257
1 TraesCS1A01G235200 chr1B 439442037 439448899 6862 False 3171.666667 8351 89.810333 998 8253 3 chr1B.!!$F3 7255
2 TraesCS1A01G235200 chr1D 326155527 326162045 6518 False 2105.000000 4828 92.303500 794 6720 4 chr1D.!!$F2 5926
3 TraesCS1A01G235200 chr1D 326167210 326168554 1344 False 941.500000 1029 92.046000 6715 8253 2 chr1D.!!$F3 1538
4 TraesCS1A01G235200 chr3A 358860003 358860741 738 False 1301.000000 1301 98.514000 1 736 1 chr3A.!!$F3 735
5 TraesCS1A01G235200 chr5A 544443691 544444373 682 False 1114.000000 1114 96.070000 53 738 1 chr5A.!!$F1 685
6 TraesCS1A01G235200 chr5D 243873630 243874373 743 False 979.000000 979 90.679000 1 736 1 chr5D.!!$F2 735
7 TraesCS1A01G235200 chr2D 521335696 521336438 742 False 977.000000 977 90.679000 1 736 1 chr2D.!!$F1 735
8 TraesCS1A01G235200 chr6D 38838192 38838937 745 False 970.000000 970 90.438000 1 736 1 chr6D.!!$F1 735
9 TraesCS1A01G235200 chr7A 700168872 700170278 1406 True 507.500000 787 92.036000 4 735 2 chr7A.!!$R1 731
10 TraesCS1A01G235200 chr3D 574246416 574247055 639 True 348.500000 536 93.165000 4 736 2 chr3D.!!$R2 732
11 TraesCS1A01G235200 chr2B 704735818 704738779 2961 True 352.700000 636 93.419000 4 745 2 chr2B.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 3877 0.039911 AGCCCCTCTGTACGAGAACT 59.960 55.000 13.90 7.07 42.62 3.01 F
1369 4475 0.106569 TGGCTCACCAATATGGCCTG 60.107 55.000 3.32 0.00 45.37 4.85 F
2389 5879 0.036164 TGAGCACAAGCCCATTACGT 59.964 50.000 0.00 0.00 43.56 3.57 F
2424 6088 0.451783 CTTTGGTTGACCTATGCCGC 59.548 55.000 1.34 0.00 36.82 6.53 F
3943 7609 0.179029 GGGCGGGCTTCAGCTATAAA 60.179 55.000 0.26 0.00 41.70 1.40 F
4021 7687 0.744414 ACGGCACATGCATGTACTCC 60.744 55.000 30.92 26.80 44.36 3.85 F
4892 8582 1.067000 TGCCATTTCCAGCAAATTCCG 60.067 47.619 0.00 0.00 35.69 4.30 F
5594 9290 1.226686 CCGCATCACTCTATGCTGCC 61.227 60.000 7.19 0.00 45.81 4.85 F
6026 9722 1.106285 CCCTATGCCAAGAAACTGCC 58.894 55.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 5049 0.040958 GCAAGTTCAGTTGGCAGTCG 60.041 55.000 0.00 0.00 0.00 4.18 R
2396 5886 1.047801 GTCAACCAAAGGGCCACATT 58.952 50.000 6.18 0.00 37.90 2.71 R
3943 7609 2.143925 GCGTCTCTACTGCAAAAACCT 58.856 47.619 0.00 0.00 0.00 3.50 R
4019 7685 3.119029 CGGAGGGAGTAACATTTTACGGA 60.119 47.826 0.00 0.00 42.28 4.69 R
5318 9009 1.293179 GGCCATGTTGCCCAAGTTC 59.707 57.895 0.00 0.00 46.11 3.01 R
5968 9664 0.179048 TTGTGAGGCAGACACAGGTG 60.179 55.000 10.77 0.00 46.44 4.00 R
5969 9665 0.767375 ATTGTGAGGCAGACACAGGT 59.233 50.000 10.77 4.07 46.44 4.00 R
7198 10913 0.239613 AGATCATCGACGCTCATCGG 59.760 55.000 0.00 0.00 42.50 4.18 R
7679 11422 0.596083 CGATGCCTAGGACAAGCGAG 60.596 60.000 14.75 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.963318 ATTTCTCCGATCCAATCTAGCA 57.037 40.909 0.00 0.00 0.00 3.49
598 3568 8.727100 TTGTTACTAGATATCATCCACCTGAT 57.273 34.615 5.32 0.00 39.22 2.90
745 3716 3.087253 CGGCCCTGGATGTACCCA 61.087 66.667 0.00 0.00 38.00 4.51
746 3717 2.595655 GGCCCTGGATGTACCCAC 59.404 66.667 0.00 0.00 38.00 4.61
747 3718 2.189521 GCCCTGGATGTACCCACG 59.810 66.667 0.00 0.00 38.00 4.94
748 3719 2.189521 CCCTGGATGTACCCACGC 59.810 66.667 0.00 0.00 38.00 5.34
749 3720 2.189521 CCTGGATGTACCCACGCC 59.810 66.667 0.00 0.00 38.00 5.68
750 3721 2.367202 CCTGGATGTACCCACGCCT 61.367 63.158 0.00 0.00 38.00 5.52
751 3722 1.046472 CCTGGATGTACCCACGCCTA 61.046 60.000 0.00 0.00 38.00 3.93
752 3723 1.048601 CTGGATGTACCCACGCCTAT 58.951 55.000 0.00 0.00 38.00 2.57
753 3724 1.416401 CTGGATGTACCCACGCCTATT 59.584 52.381 0.00 0.00 38.00 1.73
754 3725 2.631062 CTGGATGTACCCACGCCTATTA 59.369 50.000 0.00 0.00 38.00 0.98
755 3726 3.244582 TGGATGTACCCACGCCTATTAT 58.755 45.455 0.00 0.00 38.00 1.28
756 3727 3.649023 TGGATGTACCCACGCCTATTATT 59.351 43.478 0.00 0.00 38.00 1.40
757 3728 4.000988 GGATGTACCCACGCCTATTATTG 58.999 47.826 0.00 0.00 0.00 1.90
758 3729 4.504340 GGATGTACCCACGCCTATTATTGT 60.504 45.833 0.00 0.00 0.00 2.71
759 3730 4.490899 TGTACCCACGCCTATTATTGTT 57.509 40.909 0.00 0.00 0.00 2.83
760 3731 4.846040 TGTACCCACGCCTATTATTGTTT 58.154 39.130 0.00 0.00 0.00 2.83
761 3732 5.254901 TGTACCCACGCCTATTATTGTTTT 58.745 37.500 0.00 0.00 0.00 2.43
762 3733 4.976224 ACCCACGCCTATTATTGTTTTC 57.024 40.909 0.00 0.00 0.00 2.29
763 3734 4.595986 ACCCACGCCTATTATTGTTTTCT 58.404 39.130 0.00 0.00 0.00 2.52
764 3735 5.014202 ACCCACGCCTATTATTGTTTTCTT 58.986 37.500 0.00 0.00 0.00 2.52
765 3736 5.479027 ACCCACGCCTATTATTGTTTTCTTT 59.521 36.000 0.00 0.00 0.00 2.52
766 3737 6.033966 CCCACGCCTATTATTGTTTTCTTTC 58.966 40.000 0.00 0.00 0.00 2.62
767 3738 6.127730 CCCACGCCTATTATTGTTTTCTTTCT 60.128 38.462 0.00 0.00 0.00 2.52
768 3739 6.967199 CCACGCCTATTATTGTTTTCTTTCTC 59.033 38.462 0.00 0.00 0.00 2.87
769 3740 6.682863 CACGCCTATTATTGTTTTCTTTCTCG 59.317 38.462 0.00 0.00 0.00 4.04
770 3741 5.677178 CGCCTATTATTGTTTTCTTTCTCGC 59.323 40.000 0.00 0.00 0.00 5.03
771 3742 6.551736 GCCTATTATTGTTTTCTTTCTCGCA 58.448 36.000 0.00 0.00 0.00 5.10
772 3743 6.469275 GCCTATTATTGTTTTCTTTCTCGCAC 59.531 38.462 0.00 0.00 0.00 5.34
773 3744 7.526608 CCTATTATTGTTTTCTTTCTCGCACA 58.473 34.615 0.00 0.00 0.00 4.57
774 3745 8.020819 CCTATTATTGTTTTCTTTCTCGCACAA 58.979 33.333 0.00 0.00 0.00 3.33
775 3746 7.858052 ATTATTGTTTTCTTTCTCGCACAAG 57.142 32.000 0.00 0.00 0.00 3.16
776 3747 4.955925 TTGTTTTCTTTCTCGCACAAGA 57.044 36.364 0.00 0.00 0.00 3.02
777 3748 4.273005 TGTTTTCTTTCTCGCACAAGAC 57.727 40.909 0.00 0.00 0.00 3.01
778 3749 3.687212 TGTTTTCTTTCTCGCACAAGACA 59.313 39.130 0.00 0.00 0.00 3.41
779 3750 3.944422 TTTCTTTCTCGCACAAGACAC 57.056 42.857 0.00 0.00 0.00 3.67
780 3751 1.487482 TCTTTCTCGCACAAGACACG 58.513 50.000 0.00 0.00 0.00 4.49
781 3752 1.066454 TCTTTCTCGCACAAGACACGA 59.934 47.619 0.00 0.00 0.00 4.35
783 3754 3.150895 CTCGCACAAGACACGAGC 58.849 61.111 0.00 0.00 45.67 5.03
784 3755 2.710971 CTCGCACAAGACACGAGCG 61.711 63.158 0.00 0.00 45.67 5.03
786 3757 3.625232 GCACAAGACACGAGCGAA 58.375 55.556 0.00 0.00 0.00 4.70
787 3758 2.153913 GCACAAGACACGAGCGAAT 58.846 52.632 0.00 0.00 0.00 3.34
788 3759 1.346365 GCACAAGACACGAGCGAATA 58.654 50.000 0.00 0.00 0.00 1.75
789 3760 1.321743 GCACAAGACACGAGCGAATAG 59.678 52.381 0.00 0.00 0.00 1.73
790 3761 2.596452 CACAAGACACGAGCGAATAGT 58.404 47.619 0.00 0.00 0.00 2.12
791 3762 3.754955 CACAAGACACGAGCGAATAGTA 58.245 45.455 0.00 0.00 0.00 1.82
792 3763 3.542704 CACAAGACACGAGCGAATAGTAC 59.457 47.826 0.00 0.00 0.00 2.73
836 3810 2.027653 AGTCAAGCTTGGTAGGAAGAGC 60.028 50.000 25.73 4.50 35.42 4.09
858 3832 0.741221 CGGGCAAGTTGAGAGTAGCC 60.741 60.000 7.16 0.00 41.29 3.93
868 3842 1.071699 TGAGAGTAGCCCGCAAGTTTT 59.928 47.619 0.00 0.00 0.00 2.43
871 3845 0.951558 AGTAGCCCGCAAGTTTTGTG 59.048 50.000 0.00 0.00 40.74 3.33
897 3871 2.232941 TGTAAAGAAGCCCCTCTGTACG 59.767 50.000 4.71 0.00 38.51 3.67
903 3877 0.039911 AGCCCCTCTGTACGAGAACT 59.960 55.000 13.90 7.07 42.62 3.01
911 3885 4.255301 CTCTGTACGAGAACTAGGACACT 58.745 47.826 8.47 0.00 42.62 3.55
912 3886 4.649692 TCTGTACGAGAACTAGGACACTT 58.350 43.478 0.00 0.00 0.00 3.16
930 3904 3.041874 TTGCTGTGCAACCAAAACG 57.958 47.368 0.45 0.00 43.99 3.60
935 3913 2.607771 GCTGTGCAACCAAAACGATCAT 60.608 45.455 0.00 0.00 34.36 2.45
948 3926 2.071688 CGATCATCTCCATCGTTCCC 57.928 55.000 0.00 0.00 38.67 3.97
964 3942 3.427863 CGTTCCCGAGTTTGAGTTTCTAC 59.572 47.826 0.00 0.00 35.63 2.59
967 3945 3.388676 TCCCGAGTTTGAGTTTCTACCAA 59.611 43.478 0.00 0.00 0.00 3.67
970 3948 4.319549 CCGAGTTTGAGTTTCTACCAAAGC 60.320 45.833 0.00 0.00 30.40 3.51
973 3951 1.519408 TGAGTTTCTACCAAAGCGCC 58.481 50.000 2.29 0.00 0.00 6.53
974 3952 1.202710 TGAGTTTCTACCAAAGCGCCA 60.203 47.619 2.29 0.00 0.00 5.69
975 3953 1.464997 GAGTTTCTACCAAAGCGCCAG 59.535 52.381 2.29 0.00 0.00 4.85
976 3954 1.202770 AGTTTCTACCAAAGCGCCAGT 60.203 47.619 2.29 0.00 0.00 4.00
978 3956 0.394938 TTCTACCAAAGCGCCAGTCA 59.605 50.000 2.29 0.00 0.00 3.41
979 3957 0.394938 TCTACCAAAGCGCCAGTCAA 59.605 50.000 2.29 0.00 0.00 3.18
980 3958 0.517316 CTACCAAAGCGCCAGTCAAC 59.483 55.000 2.29 0.00 0.00 3.18
981 3959 1.225376 TACCAAAGCGCCAGTCAACG 61.225 55.000 2.29 0.00 0.00 4.10
1168 4230 3.131223 TCCCATCAAGTCAGTTCTCGATC 59.869 47.826 0.00 0.00 0.00 3.69
1181 4243 4.040461 AGTTCTCGATCCCTCTGTTTTGAA 59.960 41.667 0.00 0.00 0.00 2.69
1188 4264 3.754965 TCCCTCTGTTTTGAATGAGTGG 58.245 45.455 0.00 0.00 0.00 4.00
1206 4282 2.038557 GTGGCATACGATTATCACCCCT 59.961 50.000 0.00 0.00 0.00 4.79
1207 4283 2.301870 TGGCATACGATTATCACCCCTC 59.698 50.000 0.00 0.00 0.00 4.30
1210 4286 2.019807 TACGATTATCACCCCTCCCC 57.980 55.000 0.00 0.00 0.00 4.81
1213 4289 0.977395 GATTATCACCCCTCCCCTCG 59.023 60.000 0.00 0.00 0.00 4.63
1223 4299 1.437986 CTCCCCTCGCTACCGAAAG 59.562 63.158 0.00 0.00 43.87 2.62
1226 4302 1.321074 CCCCTCGCTACCGAAAGAGT 61.321 60.000 0.00 0.00 43.87 3.24
1257 4333 1.724429 GCATATGCTCTCTGCCTAGC 58.276 55.000 20.64 0.00 42.00 3.42
1261 4364 1.895966 TGCTCTCTGCCTAGCACTG 59.104 57.895 0.00 0.00 43.56 3.66
1262 4365 0.902048 TGCTCTCTGCCTAGCACTGT 60.902 55.000 0.00 0.00 43.56 3.55
1263 4366 1.107114 GCTCTCTGCCTAGCACTGTA 58.893 55.000 0.00 0.00 38.63 2.74
1264 4367 1.202359 GCTCTCTGCCTAGCACTGTAC 60.202 57.143 0.00 0.00 38.63 2.90
1265 4368 2.095461 CTCTCTGCCTAGCACTGTACA 58.905 52.381 0.00 0.00 33.79 2.90
1267 4370 2.897326 TCTCTGCCTAGCACTGTACAAA 59.103 45.455 0.00 0.00 33.79 2.83
1274 4377 5.353956 TGCCTAGCACTGTACAAATAACATG 59.646 40.000 0.00 0.00 31.71 3.21
1342 4448 2.866510 CATTCAAGCGCACGCACG 60.867 61.111 18.24 7.57 44.88 5.34
1354 4460 1.817941 ACGCACGAAGTTTGTGGCT 60.818 52.632 22.11 5.15 41.61 4.75
1355 4461 1.082756 CGCACGAAGTTTGTGGCTC 60.083 57.895 22.11 7.21 41.61 4.70
1356 4462 1.771073 CGCACGAAGTTTGTGGCTCA 61.771 55.000 22.11 0.00 41.61 4.26
1357 4463 0.317020 GCACGAAGTTTGTGGCTCAC 60.317 55.000 22.11 4.10 41.61 3.51
1358 4464 0.307760 CACGAAGTTTGTGGCTCACC 59.692 55.000 14.61 0.00 41.61 4.02
1368 4474 2.320671 TGGCTCACCAATATGGCCT 58.679 52.632 3.32 0.00 45.37 5.19
1369 4475 0.106569 TGGCTCACCAATATGGCCTG 60.107 55.000 3.32 0.00 45.37 4.85
1371 4477 0.466922 GCTCACCAATATGGCCTGCT 60.467 55.000 3.32 0.00 42.67 4.24
1375 4481 2.079158 CACCAATATGGCCTGCTATCG 58.921 52.381 3.32 0.00 42.67 2.92
1398 4514 2.000429 AGCTCATTTTTCGCATTGCC 58.000 45.000 2.41 0.00 0.00 4.52
1401 4517 0.735632 TCATTTTTCGCATTGCCGGC 60.736 50.000 22.73 22.73 0.00 6.13
1403 4519 3.905705 TTTTTCGCATTGCCGGCCG 62.906 57.895 26.77 21.04 0.00 6.13
1417 4533 2.886124 GCCGCCTCGTGCTAAGAC 60.886 66.667 0.00 0.00 38.05 3.01
1422 4538 1.687494 GCCTCGTGCTAAGACGCAAG 61.687 60.000 0.00 0.00 42.32 4.01
1440 4556 3.436704 GCAAGTCATTGGTTCGAATCTGA 59.563 43.478 10.29 3.02 36.88 3.27
1459 4575 9.624697 GAATCTGATAGAATGCTTGTCTACTAG 57.375 37.037 0.00 0.00 30.52 2.57
1469 4585 9.270640 GAATGCTTGTCTACTAGATTGATTCAT 57.729 33.333 0.00 0.00 0.00 2.57
1471 4587 9.624373 ATGCTTGTCTACTAGATTGATTCATTT 57.376 29.630 0.00 0.00 0.00 2.32
1514 4630 9.199982 CGAAACTTTCTCAAATAACTACCTGTA 57.800 33.333 0.12 0.00 0.00 2.74
1666 4782 9.793259 TCCTAGATGAAAACATAACAGAAAAGT 57.207 29.630 0.00 0.00 0.00 2.66
1673 4789 9.787532 TGAAAACATAACAGAAAAGTCAGAAAG 57.212 29.630 0.00 0.00 0.00 2.62
1733 4849 2.245096 GCTGCAATTAGTGTGCTTTCG 58.755 47.619 0.00 0.00 42.69 3.46
1737 4853 3.058983 TGCAATTAGTGTGCTTTCGTGAG 60.059 43.478 0.00 0.00 42.69 3.51
1738 4854 3.058914 GCAATTAGTGTGCTTTCGTGAGT 60.059 43.478 0.00 0.00 39.00 3.41
1772 4893 4.471904 TTCACTACGATGCTTCAGGATT 57.528 40.909 0.08 0.00 0.00 3.01
1794 4921 1.594194 TTTGCATGATGGCACGGTCC 61.594 55.000 0.00 0.00 44.86 4.46
1799 4926 1.976132 ATGATGGCACGGTCCAGGAG 61.976 60.000 0.00 0.00 39.89 3.69
1823 4950 1.153628 GAAGTGGATGTCGACCCCG 60.154 63.158 14.12 0.00 37.07 5.73
1922 5049 2.032681 ACAAGGCCGCTGGAAGAC 59.967 61.111 11.96 0.00 34.07 3.01
1929 5056 2.811317 CGCTGGAAGACGACTGCC 60.811 66.667 4.77 4.77 42.15 4.85
1943 5070 2.494059 GACTGCCAACTGAACTTGCTA 58.506 47.619 0.00 0.00 0.00 3.49
1976 5103 0.252103 AAGAAGGGCGGGACACTCTA 60.252 55.000 0.00 0.00 0.00 2.43
2000 5127 0.687354 ACTCGAGTGCCCACATTCTT 59.313 50.000 19.30 0.00 30.66 2.52
2026 5153 1.609072 GGTGAGTTCAAAGCTTGTCCC 59.391 52.381 0.00 0.00 0.00 4.46
2064 5191 6.796705 TTGATGAGCATAGCATGATAACAG 57.203 37.500 0.00 0.00 0.00 3.16
2068 5195 7.980099 TGATGAGCATAGCATGATAACAGATAG 59.020 37.037 0.00 0.00 0.00 2.08
2235 5725 0.590732 CGCTGAATGGCTCGCATTTC 60.591 55.000 0.00 0.00 0.00 2.17
2240 5730 0.676466 AATGGCTCGCATTTCGGTCA 60.676 50.000 0.00 0.00 39.05 4.02
2244 5734 0.447801 GCTCGCATTTCGGTCACATT 59.552 50.000 0.00 0.00 39.05 2.71
2374 5864 4.585955 ATCATCAATGAATTGCCTGAGC 57.414 40.909 0.00 0.00 40.69 4.26
2389 5879 0.036164 TGAGCACAAGCCCATTACGT 59.964 50.000 0.00 0.00 43.56 3.57
2390 5880 1.165270 GAGCACAAGCCCATTACGTT 58.835 50.000 0.00 0.00 43.56 3.99
2391 5881 2.289756 TGAGCACAAGCCCATTACGTTA 60.290 45.455 0.00 0.00 43.56 3.18
2392 5882 2.081462 AGCACAAGCCCATTACGTTAC 58.919 47.619 0.00 0.00 43.56 2.50
2393 5883 1.807742 GCACAAGCCCATTACGTTACA 59.192 47.619 0.00 0.00 33.58 2.41
2394 5884 2.422127 GCACAAGCCCATTACGTTACAT 59.578 45.455 0.00 0.00 33.58 2.29
2395 5885 3.623960 GCACAAGCCCATTACGTTACATA 59.376 43.478 0.00 0.00 33.58 2.29
2396 5886 4.095185 GCACAAGCCCATTACGTTACATAA 59.905 41.667 0.00 0.00 33.58 1.90
2424 6088 0.451783 CTTTGGTTGACCTATGCCGC 59.548 55.000 1.34 0.00 36.82 6.53
2481 6145 4.488879 CTTTTGCTTGCCTCAAGGTAATC 58.511 43.478 8.43 0.00 41.31 1.75
2500 6164 4.553330 ATCCGGTCTTCTTTCTTTAGCA 57.447 40.909 0.00 0.00 0.00 3.49
2509 6173 7.066505 GTCTTCTTTCTTTAGCAAAGTTCTCG 58.933 38.462 8.01 0.00 39.52 4.04
2669 6333 6.305272 ACTTCTCAAGGTACATCATCATGT 57.695 37.500 0.00 0.00 45.73 3.21
2671 6335 8.027524 ACTTCTCAAGGTACATCATCATGTAT 57.972 34.615 0.00 0.00 45.38 2.29
2749 6415 9.836864 TTACTATACACAGAATAAGTACCTCGA 57.163 33.333 0.00 0.00 0.00 4.04
2786 6452 4.915667 GGTAACAAAAGCCGAAACTGATTC 59.084 41.667 0.00 0.00 34.52 2.52
2847 6513 4.960938 TGTCAACAGTGCAAGATAAGAGT 58.039 39.130 0.00 0.00 0.00 3.24
2902 6568 9.477484 AACTATACATTCCTAACGATCATGTTC 57.523 33.333 0.00 0.00 33.32 3.18
2929 6595 7.147312 TGCTCTCATTTTATGAAAACCTGTTG 58.853 34.615 0.00 0.00 39.11 3.33
2998 6664 1.756408 ATGATGGAGGAGGCTGCGAG 61.756 60.000 0.00 0.00 0.00 5.03
3008 6674 3.558411 GCTGCGAGGCGTGATCAC 61.558 66.667 16.21 16.21 0.00 3.06
3088 6754 7.128976 GGCATTCTCGATTAGATTTGTCTTTC 58.871 38.462 0.00 0.00 33.05 2.62
3204 6870 3.010420 GCTTCTTCCTTCCACATGGTAC 58.990 50.000 0.00 0.00 36.34 3.34
3422 7088 7.284074 TGTATTTGTTAGGTTGAGAGTCCAAA 58.716 34.615 0.00 0.00 0.00 3.28
3487 7153 5.614887 GCGAACTACAAGGAGAACATGTTTC 60.615 44.000 13.36 11.58 0.00 2.78
3643 7309 2.640316 ACAGGGAGAGGTGTCAAAAC 57.360 50.000 0.00 0.00 0.00 2.43
3656 7322 4.368315 GTGTCAAAACCAAAACCAGATCC 58.632 43.478 0.00 0.00 0.00 3.36
3718 7384 9.685276 TCTTGAAATATTTGATAAGAGGCTTCA 57.315 29.630 5.17 0.00 0.00 3.02
3773 7439 5.652014 CAGGTGGATAAAATAGAAGCCACAA 59.348 40.000 11.40 0.00 45.68 3.33
3818 7484 2.614779 CATCAACTCTCTCGTGCACAT 58.385 47.619 18.64 0.00 0.00 3.21
3875 7541 3.589951 AATGCCCATAGTGAAGAGCAT 57.410 42.857 0.00 0.00 42.44 3.79
3884 7550 0.895100 GTGAAGAGCATGCCAACCCA 60.895 55.000 15.66 3.62 0.00 4.51
3943 7609 0.179029 GGGCGGGCTTCAGCTATAAA 60.179 55.000 0.26 0.00 41.70 1.40
3958 7624 7.165485 TCAGCTATAAAGGTTTTTGCAGTAGA 58.835 34.615 0.00 0.00 0.00 2.59
4018 7684 2.354510 ACATAACGGCACATGCATGTAC 59.645 45.455 30.92 25.26 44.36 2.90
4019 7685 2.394930 TAACGGCACATGCATGTACT 57.605 45.000 30.92 13.08 44.36 2.73
4020 7686 1.086696 AACGGCACATGCATGTACTC 58.913 50.000 30.92 21.22 44.36 2.59
4021 7687 0.744414 ACGGCACATGCATGTACTCC 60.744 55.000 30.92 26.80 44.36 3.85
4022 7688 1.765161 CGGCACATGCATGTACTCCG 61.765 60.000 33.11 33.11 44.36 4.63
4023 7689 0.744414 GGCACATGCATGTACTCCGT 60.744 55.000 30.92 4.86 44.36 4.69
4024 7690 1.472552 GGCACATGCATGTACTCCGTA 60.473 52.381 30.92 0.00 44.36 4.02
4055 7721 8.755977 GTTACTCCCTCCGATCCATATTAATTA 58.244 37.037 0.00 0.00 0.00 1.40
4426 8111 6.314400 TCCTTCGTTATTAAACCTGAATTCCG 59.686 38.462 2.27 0.00 31.46 4.30
4487 8172 7.587037 TGATTTTGGAGTTCTTCACAGAAAT 57.413 32.000 0.00 0.00 40.90 2.17
4551 8236 7.208064 AGATTCCAACAGGTAAGGCTTAATA 57.792 36.000 8.86 0.00 0.00 0.98
4564 8249 5.491323 AGGCTTAATACTATCCCTTGAGC 57.509 43.478 0.00 0.00 32.49 4.26
4587 8272 8.748380 AGCTGCTAGTTTCAACAATTTTAATC 57.252 30.769 0.00 0.00 0.00 1.75
4690 8379 2.232452 TGCAGAGAGAGCCAAGTAAGTC 59.768 50.000 0.00 0.00 0.00 3.01
4699 8388 2.832733 AGCCAAGTAAGTCTGGTAGACC 59.167 50.000 5.41 0.00 46.18 3.85
4745 8434 4.553330 TCTACTCCCTCCATCACAAAAC 57.447 45.455 0.00 0.00 0.00 2.43
4749 8438 2.821969 CTCCCTCCATCACAAAACAAGG 59.178 50.000 0.00 0.00 0.00 3.61
4756 8445 3.426695 CCATCACAAAACAAGGATCGCTC 60.427 47.826 0.00 0.00 0.00 5.03
4892 8582 1.067000 TGCCATTTCCAGCAAATTCCG 60.067 47.619 0.00 0.00 35.69 4.30
5024 8715 9.916397 CTGCCTACGTTTAAATAGAAGTTATTG 57.084 33.333 0.00 0.00 0.00 1.90
5095 8786 9.733556 ATTAATTATGTCTACGGCATATTTGGA 57.266 29.630 6.09 0.00 0.00 3.53
5220 8911 7.979444 TTCTAAACTTCAAAATGGTCGAGAT 57.021 32.000 0.00 0.00 0.00 2.75
5237 8928 9.144298 TGGTCGAGATACTAATTTATTTCTCCT 57.856 33.333 0.00 0.00 0.00 3.69
5238 8929 9.413048 GGTCGAGATACTAATTTATTTCTCCTG 57.587 37.037 0.00 0.00 0.00 3.86
5328 9019 7.563924 AGTTATGTATCTACTAGAACTTGGGCA 59.436 37.037 0.00 0.00 0.00 5.36
5575 9271 6.590234 AACTGGTCATTTTCCCTTAATGTC 57.410 37.500 0.00 0.00 35.13 3.06
5587 9283 3.069586 CCCTTAATGTCCGCATCACTCTA 59.930 47.826 0.00 0.00 33.50 2.43
5594 9290 1.226686 CCGCATCACTCTATGCTGCC 61.227 60.000 7.19 0.00 45.81 4.85
5752 9448 2.088950 ATGCTTTGGCTTGTCAATGC 57.911 45.000 15.73 15.73 43.61 3.56
5801 9497 7.994425 ACTCTATGATGATCTACAGTGGTAG 57.006 40.000 0.00 0.00 46.85 3.18
5971 9667 7.887996 TGAAATTTCAATTTGTATCAGCACC 57.112 32.000 18.45 0.00 38.64 5.01
5972 9668 7.669427 TGAAATTTCAATTTGTATCAGCACCT 58.331 30.769 18.45 0.00 38.64 4.00
5973 9669 7.599621 TGAAATTTCAATTTGTATCAGCACCTG 59.400 33.333 18.45 0.00 38.64 4.00
5974 9670 6.594788 ATTTCAATTTGTATCAGCACCTGT 57.405 33.333 0.00 0.00 32.61 4.00
5975 9671 5.375417 TTCAATTTGTATCAGCACCTGTG 57.625 39.130 0.00 0.00 32.61 3.66
5994 9690 4.397420 TGTGTCTGCCTCACAATAATGTT 58.603 39.130 3.79 0.00 41.83 2.71
5995 9691 4.455533 TGTGTCTGCCTCACAATAATGTTC 59.544 41.667 3.79 0.00 41.83 3.18
6013 9709 9.896645 ATAATGTTCAAGTGCTATATCCCTATG 57.103 33.333 0.00 0.00 0.00 2.23
6026 9722 1.106285 CCCTATGCCAAGAAACTGCC 58.894 55.000 0.00 0.00 0.00 4.85
6036 9732 1.366319 AGAAACTGCCTGGACCTGAT 58.634 50.000 0.00 0.00 0.00 2.90
6048 9744 2.225091 TGGACCTGATTGCTTGTTGGAT 60.225 45.455 0.00 0.00 0.00 3.41
6058 9754 5.787953 TTGCTTGTTGGATCTTCAATCAA 57.212 34.783 0.00 2.20 0.00 2.57
6059 9755 5.381174 TGCTTGTTGGATCTTCAATCAAG 57.619 39.130 14.90 14.90 37.97 3.02
6399 10095 4.082026 GCCATTCTTTTGGAGCATTACTGT 60.082 41.667 0.00 0.00 39.25 3.55
6588 10284 4.900684 TGGTTCTCGTGGTAATCAATCAA 58.099 39.130 0.00 0.00 0.00 2.57
6625 10321 7.979444 TTCTTTCGAGTTAAATGACAATCCT 57.021 32.000 0.00 0.00 0.00 3.24
6636 10332 4.774660 ATGACAATCCTCTTCTGATGCT 57.225 40.909 0.00 0.00 0.00 3.79
6668 10364 6.584185 TGCTAAGATACATAACGCTGGATA 57.416 37.500 0.00 0.00 0.00 2.59
6702 10398 9.643652 GAAATCGACATGACTGATAAGAAAATC 57.356 33.333 0.00 0.00 0.00 2.17
6851 10566 9.125026 GTAGTTTTATTGTTGGATCTCATGGAT 57.875 33.333 0.00 0.00 37.37 3.41
6941 10656 9.443323 TTTAAGTAAATACAGCTTGTGCAGATA 57.557 29.630 0.00 0.00 42.74 1.98
6996 10711 3.119990 CGGTTTCATTTTCAGGTATGCGT 60.120 43.478 0.00 0.00 0.00 5.24
7104 10819 6.955963 CACTGTTGTCGATAAAAGCATTAGTC 59.044 38.462 11.67 0.00 0.00 2.59
7150 10865 2.775911 ATATGTGGATGGATGGCTCG 57.224 50.000 0.00 0.00 0.00 5.03
7164 10879 1.136305 TGGCTCGTACTATTGCAGGTC 59.864 52.381 0.00 0.00 0.00 3.85
7166 10881 2.464865 GCTCGTACTATTGCAGGTCAG 58.535 52.381 0.00 0.00 0.00 3.51
7174 10889 2.116983 ATTGCAGGTCAGCGTCAGGT 62.117 55.000 0.00 0.00 37.31 4.00
7188 10903 2.166459 CGTCAGGTTGAGAGATAAGCCA 59.834 50.000 0.00 0.00 0.00 4.75
7192 10907 4.718774 TCAGGTTGAGAGATAAGCCAGAAT 59.281 41.667 0.00 0.00 0.00 2.40
7196 10911 6.069731 AGGTTGAGAGATAAGCCAGAATTCTT 60.070 38.462 4.86 0.00 0.00 2.52
7198 10913 5.923204 TGAGAGATAAGCCAGAATTCTTCC 58.077 41.667 4.86 0.00 0.00 3.46
7200 10915 4.061596 GAGATAAGCCAGAATTCTTCCCG 58.938 47.826 4.86 0.00 0.00 5.14
7212 10927 1.101635 TCTTCCCGATGAGCGTCGAT 61.102 55.000 13.22 0.00 44.06 3.59
7396 11114 4.948004 TGACGTACTACATGACTTGAGGAT 59.052 41.667 0.00 0.00 0.00 3.24
7437 11155 3.118629 CCCTATGTCTATGTGTGCAGTGT 60.119 47.826 0.00 0.00 0.00 3.55
7438 11156 3.867493 CCTATGTCTATGTGTGCAGTGTG 59.133 47.826 0.00 0.00 0.00 3.82
7439 11157 2.908688 TGTCTATGTGTGCAGTGTGT 57.091 45.000 0.00 0.00 0.00 3.72
7440 11158 2.482864 TGTCTATGTGTGCAGTGTGTG 58.517 47.619 0.00 0.00 0.00 3.82
7441 11159 2.102252 TGTCTATGTGTGCAGTGTGTGA 59.898 45.455 0.00 0.00 0.00 3.58
7445 11163 1.748950 TGTGTGCAGTGTGTGATGTT 58.251 45.000 0.00 0.00 0.00 2.71
7446 11164 2.090760 TGTGTGCAGTGTGTGATGTTT 58.909 42.857 0.00 0.00 0.00 2.83
7447 11165 2.159407 TGTGTGCAGTGTGTGATGTTTG 60.159 45.455 0.00 0.00 0.00 2.93
7448 11166 1.404748 TGTGCAGTGTGTGATGTTTGG 59.595 47.619 0.00 0.00 0.00 3.28
7449 11167 1.405105 GTGCAGTGTGTGATGTTTGGT 59.595 47.619 0.00 0.00 0.00 3.67
7450 11168 1.404748 TGCAGTGTGTGATGTTTGGTG 59.595 47.619 0.00 0.00 0.00 4.17
7451 11169 1.865248 GCAGTGTGTGATGTTTGGTGC 60.865 52.381 0.00 0.00 0.00 5.01
7452 11170 1.032014 AGTGTGTGATGTTTGGTGCC 58.968 50.000 0.00 0.00 0.00 5.01
7453 11171 0.743688 GTGTGTGATGTTTGGTGCCA 59.256 50.000 0.00 0.00 0.00 4.92
7454 11172 1.031235 TGTGTGATGTTTGGTGCCAG 58.969 50.000 0.00 0.00 0.00 4.85
7455 11173 1.032014 GTGTGATGTTTGGTGCCAGT 58.968 50.000 0.00 0.00 0.00 4.00
7456 11174 1.408702 GTGTGATGTTTGGTGCCAGTT 59.591 47.619 0.00 0.00 0.00 3.16
7457 11175 1.680735 TGTGATGTTTGGTGCCAGTTC 59.319 47.619 0.00 0.00 0.00 3.01
7458 11176 1.956477 GTGATGTTTGGTGCCAGTTCT 59.044 47.619 0.00 0.00 0.00 3.01
7459 11177 1.955778 TGATGTTTGGTGCCAGTTCTG 59.044 47.619 0.00 0.00 0.00 3.02
7460 11178 1.956477 GATGTTTGGTGCCAGTTCTGT 59.044 47.619 0.00 0.00 0.00 3.41
7461 11179 1.388547 TGTTTGGTGCCAGTTCTGTC 58.611 50.000 0.00 0.00 0.00 3.51
7462 11180 1.340502 TGTTTGGTGCCAGTTCTGTCA 60.341 47.619 0.00 0.00 0.00 3.58
7463 11181 1.748493 GTTTGGTGCCAGTTCTGTCAA 59.252 47.619 0.00 0.00 0.00 3.18
7464 11182 2.136298 TTGGTGCCAGTTCTGTCAAA 57.864 45.000 0.00 0.00 0.00 2.69
7465 11183 2.136298 TGGTGCCAGTTCTGTCAAAA 57.864 45.000 0.00 0.00 0.00 2.44
7466 11184 2.451490 TGGTGCCAGTTCTGTCAAAAA 58.549 42.857 0.00 0.00 0.00 1.94
7494 11212 1.032014 ATGTTTGGTGCCAGTGTCAC 58.968 50.000 0.00 0.00 0.00 3.67
7518 11236 5.422331 CCTATAGGTTCAGGTTCAGTCAAGA 59.578 44.000 10.96 0.00 0.00 3.02
7578 11296 2.284552 ATGGGCCGGGCAATGTTT 60.285 55.556 30.95 0.00 0.00 2.83
7624 11367 9.388506 AGATGATTCGAGTATGAAAGAACAAAT 57.611 29.630 0.00 0.00 0.00 2.32
7634 11377 4.196193 TGAAAGAACAAATCGTGTCCTGT 58.804 39.130 0.00 0.00 40.60 4.00
7635 11378 4.638421 TGAAAGAACAAATCGTGTCCTGTT 59.362 37.500 0.00 0.00 40.60 3.16
7639 11382 6.687081 AGAACAAATCGTGTCCTGTTTTTA 57.313 33.333 0.00 0.00 40.60 1.52
7676 11419 0.391130 CTGGGCTACGTGCTTTGCTA 60.391 55.000 0.00 0.00 42.39 3.49
7677 11420 0.251916 TGGGCTACGTGCTTTGCTAT 59.748 50.000 0.00 0.00 42.39 2.97
7678 11421 0.657840 GGGCTACGTGCTTTGCTATG 59.342 55.000 0.00 0.00 42.39 2.23
7679 11422 0.028110 GGCTACGTGCTTTGCTATGC 59.972 55.000 0.00 0.00 42.39 3.14
7680 11423 1.009829 GCTACGTGCTTTGCTATGCT 58.990 50.000 0.00 0.00 38.95 3.79
7683 11426 1.297158 CGTGCTTTGCTATGCTCGC 60.297 57.895 14.86 2.95 38.84 5.03
7722 11475 4.072088 GCGCCCGCGTATGTATGC 62.072 66.667 11.18 0.00 42.09 3.14
7724 11477 2.657757 CGCCCGCGTATGTATGCAG 61.658 63.158 4.92 0.00 38.09 4.41
7725 11478 1.594293 GCCCGCGTATGTATGCAGT 60.594 57.895 4.92 0.00 38.09 4.40
7726 11479 0.319211 GCCCGCGTATGTATGCAGTA 60.319 55.000 4.92 0.00 38.09 2.74
7727 11480 1.671850 GCCCGCGTATGTATGCAGTAT 60.672 52.381 4.92 0.00 38.09 2.12
7728 11481 1.992667 CCCGCGTATGTATGCAGTATG 59.007 52.381 4.92 0.00 38.09 2.39
7748 11501 2.180086 TGCTGGTAGATGAGATAGGGGT 59.820 50.000 0.00 0.00 0.00 4.95
7769 11525 4.522789 GGTTTTCACCTGAAATAGAAGGCA 59.477 41.667 1.35 0.00 42.83 4.75
7853 11612 6.490381 GTGATTCCCTTTTACTTTTCTGGACT 59.510 38.462 0.00 0.00 0.00 3.85
7856 11615 4.102054 TCCCTTTTACTTTTCTGGACTCGT 59.898 41.667 0.00 0.00 0.00 4.18
7933 11692 3.964875 CCGCGCAGGTTTGTTGCT 61.965 61.111 8.75 0.00 39.38 3.91
7976 11735 1.272490 CCTCCTCTGTCTAAACGCACA 59.728 52.381 0.00 0.00 0.00 4.57
8013 11772 4.560108 GCAATGCCTCAGAAGACACATTTT 60.560 41.667 0.00 0.00 0.00 1.82
8028 11787 7.260603 AGACACATTTTCCTTTCTTCACTTTG 58.739 34.615 0.00 0.00 0.00 2.77
8056 11815 6.582295 GCTCTTTCAGATTCAGATAGATCGAC 59.418 42.308 0.00 0.00 0.00 4.20
8079 11838 3.883549 GGAGCCATGCCTCTCCCC 61.884 72.222 3.38 0.00 42.30 4.81
8223 11984 0.396435 AGAACGACAGGTGCCATCAA 59.604 50.000 0.00 0.00 0.00 2.57
8232 11993 5.567423 CGACAGGTGCCATCAATGATATCTA 60.567 44.000 3.98 0.00 0.00 1.98
8236 11997 5.545335 AGGTGCCATCAATGATATCTACTCA 59.455 40.000 3.98 0.00 0.00 3.41
8253 12014 0.114364 TCACCTCACCTGGAGCACTA 59.886 55.000 0.00 0.00 42.62 2.74
8254 12015 0.534412 CACCTCACCTGGAGCACTAG 59.466 60.000 0.00 0.00 42.62 2.57
8255 12016 0.115349 ACCTCACCTGGAGCACTAGT 59.885 55.000 0.00 0.00 42.62 2.57
8256 12017 1.358103 ACCTCACCTGGAGCACTAGTA 59.642 52.381 0.00 0.00 42.62 1.82
8257 12018 1.751924 CCTCACCTGGAGCACTAGTAC 59.248 57.143 0.00 0.00 42.62 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 5.766670 CCTTGATCACACATGCATATAGGTT 59.233 40.000 0.00 0.00 0.00 3.50
296 1165 2.086869 GCAGCAACAATCTCCAGCTAA 58.913 47.619 0.00 0.00 33.59 3.09
739 3710 5.587443 AGAAAACAATAATAGGCGTGGGTAC 59.413 40.000 0.00 0.00 0.00 3.34
740 3711 5.747342 AGAAAACAATAATAGGCGTGGGTA 58.253 37.500 0.00 0.00 0.00 3.69
745 3716 6.674760 GCGAGAAAGAAAACAATAATAGGCGT 60.675 38.462 0.00 0.00 0.00 5.68
746 3717 5.677178 GCGAGAAAGAAAACAATAATAGGCG 59.323 40.000 0.00 0.00 0.00 5.52
747 3718 6.469275 GTGCGAGAAAGAAAACAATAATAGGC 59.531 38.462 0.00 0.00 0.00 3.93
748 3719 7.526608 TGTGCGAGAAAGAAAACAATAATAGG 58.473 34.615 0.00 0.00 0.00 2.57
749 3720 8.948853 TTGTGCGAGAAAGAAAACAATAATAG 57.051 30.769 0.00 0.00 0.00 1.73
750 3721 8.779303 TCTTGTGCGAGAAAGAAAACAATAATA 58.221 29.630 0.00 0.00 29.59 0.98
751 3722 7.591426 GTCTTGTGCGAGAAAGAAAACAATAAT 59.409 33.333 0.00 0.00 34.33 1.28
752 3723 6.910433 GTCTTGTGCGAGAAAGAAAACAATAA 59.090 34.615 0.00 0.00 34.33 1.40
753 3724 6.037720 TGTCTTGTGCGAGAAAGAAAACAATA 59.962 34.615 0.00 0.00 34.33 1.90
754 3725 5.163663 TGTCTTGTGCGAGAAAGAAAACAAT 60.164 36.000 0.00 0.00 34.33 2.71
755 3726 4.155099 TGTCTTGTGCGAGAAAGAAAACAA 59.845 37.500 0.00 0.00 34.33 2.83
756 3727 3.687212 TGTCTTGTGCGAGAAAGAAAACA 59.313 39.130 0.00 0.00 34.33 2.83
757 3728 4.029043 GTGTCTTGTGCGAGAAAGAAAAC 58.971 43.478 0.00 0.00 34.33 2.43
758 3729 3.242284 CGTGTCTTGTGCGAGAAAGAAAA 60.242 43.478 0.00 0.00 34.33 2.29
759 3730 2.284150 CGTGTCTTGTGCGAGAAAGAAA 59.716 45.455 0.00 0.00 34.33 2.52
760 3731 1.858458 CGTGTCTTGTGCGAGAAAGAA 59.142 47.619 0.00 0.00 34.33 2.52
761 3732 1.066454 TCGTGTCTTGTGCGAGAAAGA 59.934 47.619 0.00 0.00 0.00 2.52
762 3733 1.487482 TCGTGTCTTGTGCGAGAAAG 58.513 50.000 0.00 0.00 0.00 2.62
763 3734 3.652292 TCGTGTCTTGTGCGAGAAA 57.348 47.368 0.00 0.00 0.00 2.52
769 3740 1.321743 CTATTCGCTCGTGTCTTGTGC 59.678 52.381 0.00 0.00 0.00 4.57
770 3741 2.596452 ACTATTCGCTCGTGTCTTGTG 58.404 47.619 0.00 0.00 0.00 3.33
771 3742 3.439476 AGTACTATTCGCTCGTGTCTTGT 59.561 43.478 0.00 0.00 0.00 3.16
772 3743 4.017380 AGTACTATTCGCTCGTGTCTTG 57.983 45.455 0.00 0.00 0.00 3.02
773 3744 4.260132 CGTAGTACTATTCGCTCGTGTCTT 60.260 45.833 5.75 0.00 0.00 3.01
774 3745 3.244814 CGTAGTACTATTCGCTCGTGTCT 59.755 47.826 5.75 0.00 0.00 3.41
775 3746 3.243877 TCGTAGTACTATTCGCTCGTGTC 59.756 47.826 5.75 0.00 0.00 3.67
776 3747 3.190079 TCGTAGTACTATTCGCTCGTGT 58.810 45.455 5.75 0.00 0.00 4.49
777 3748 3.244814 ACTCGTAGTACTATTCGCTCGTG 59.755 47.826 5.75 7.26 0.00 4.35
778 3749 3.452474 ACTCGTAGTACTATTCGCTCGT 58.548 45.455 5.75 2.13 0.00 4.18
779 3750 3.488678 TGACTCGTAGTACTATTCGCTCG 59.511 47.826 5.75 4.02 0.00 5.03
780 3751 5.401033 TTGACTCGTAGTACTATTCGCTC 57.599 43.478 5.75 5.05 0.00 5.03
781 3752 5.759273 AGATTGACTCGTAGTACTATTCGCT 59.241 40.000 5.75 0.00 0.00 4.93
782 3753 5.846994 CAGATTGACTCGTAGTACTATTCGC 59.153 44.000 5.75 0.00 0.00 4.70
783 3754 6.946165 ACAGATTGACTCGTAGTACTATTCG 58.054 40.000 5.75 6.23 0.00 3.34
784 3755 8.497554 CCTACAGATTGACTCGTAGTACTATTC 58.502 40.741 5.75 1.91 33.09 1.75
785 3756 7.041235 GCCTACAGATTGACTCGTAGTACTATT 60.041 40.741 5.75 0.00 33.09 1.73
786 3757 6.427547 GCCTACAGATTGACTCGTAGTACTAT 59.572 42.308 5.75 0.00 33.09 2.12
787 3758 5.757320 GCCTACAGATTGACTCGTAGTACTA 59.243 44.000 0.00 0.00 33.09 1.82
788 3759 4.575645 GCCTACAGATTGACTCGTAGTACT 59.424 45.833 0.00 0.00 33.09 2.73
789 3760 4.334759 TGCCTACAGATTGACTCGTAGTAC 59.665 45.833 0.00 0.00 33.09 2.73
790 3761 4.520179 TGCCTACAGATTGACTCGTAGTA 58.480 43.478 0.00 0.00 33.09 1.82
791 3762 3.353557 TGCCTACAGATTGACTCGTAGT 58.646 45.455 0.00 0.00 33.09 2.73
836 3810 2.501223 TACTCTCAACTTGCCCGCCG 62.501 60.000 0.00 0.00 0.00 6.46
849 3823 1.464997 CAAAACTTGCGGGCTACTCTC 59.535 52.381 0.00 0.00 0.00 3.20
858 3832 0.860533 CAATGCCACAAAACTTGCGG 59.139 50.000 0.00 0.00 35.96 5.69
868 3842 1.892474 GGGCTTCTTTACAATGCCACA 59.108 47.619 0.00 0.00 44.85 4.17
871 3845 1.751351 GAGGGGCTTCTTTACAATGCC 59.249 52.381 0.00 0.00 42.56 4.40
876 3850 2.232941 CGTACAGAGGGGCTTCTTTACA 59.767 50.000 12.73 0.00 32.45 2.41
897 3871 3.743396 CACAGCAAAGTGTCCTAGTTCTC 59.257 47.826 0.00 0.00 34.83 2.87
903 3877 2.340210 TTGCACAGCAAAGTGTCCTA 57.660 45.000 1.36 0.00 45.96 2.94
912 3886 0.528017 TCGTTTTGGTTGCACAGCAA 59.472 45.000 0.00 0.00 46.80 3.91
946 3924 3.396260 TGGTAGAAACTCAAACTCGGG 57.604 47.619 0.00 0.00 0.00 5.14
947 3925 4.319549 GCTTTGGTAGAAACTCAAACTCGG 60.320 45.833 0.00 0.00 0.00 4.63
948 3926 4.608445 CGCTTTGGTAGAAACTCAAACTCG 60.608 45.833 0.00 0.00 0.00 4.18
964 3942 2.252260 CGTTGACTGGCGCTTTGG 59.748 61.111 7.64 0.00 0.00 3.28
1008 4058 3.741476 GCCTGCGCCTTGTCCTTG 61.741 66.667 4.18 0.00 0.00 3.61
1083 4145 3.573772 CTGCTCGAACAGGCGGTCA 62.574 63.158 7.98 0.00 33.85 4.02
1168 4230 2.229784 GCCACTCATTCAAAACAGAGGG 59.770 50.000 0.00 0.00 32.52 4.30
1181 4243 4.563580 GGGTGATAATCGTATGCCACTCAT 60.564 45.833 0.00 0.00 39.17 2.90
1188 4264 2.354805 GGGAGGGGTGATAATCGTATGC 60.355 54.545 0.00 0.00 0.00 3.14
1206 4282 1.000521 TCTTTCGGTAGCGAGGGGA 60.001 57.895 17.37 13.21 0.00 4.81
1207 4283 1.321074 ACTCTTTCGGTAGCGAGGGG 61.321 60.000 17.37 15.76 0.00 4.79
1210 4286 2.617308 TCCATACTCTTTCGGTAGCGAG 59.383 50.000 17.37 8.37 0.00 5.03
1213 4289 3.491104 CCAGTCCATACTCTTTCGGTAGC 60.491 52.174 0.00 0.00 31.97 3.58
1223 4299 1.729586 TATGCCCCCAGTCCATACTC 58.270 55.000 0.00 0.00 31.97 2.59
1226 4302 0.698238 GCATATGCCCCCAGTCCATA 59.302 55.000 17.26 0.00 34.31 2.74
1257 4333 8.559536 AGACTTGAACATGTTATTTGTACAGTG 58.440 33.333 11.95 3.51 0.00 3.66
1291 4397 7.395489 AGCAAATCAGAGGTATGATTCAAAAGT 59.605 33.333 0.49 0.00 46.64 2.66
1292 4398 7.769220 AGCAAATCAGAGGTATGATTCAAAAG 58.231 34.615 0.49 0.00 46.64 2.27
1294 4400 7.177216 ACAAGCAAATCAGAGGTATGATTCAAA 59.823 33.333 0.49 0.00 46.64 2.69
1342 4448 4.380867 CCATATTGGTGAGCCACAAACTTC 60.381 45.833 7.49 0.00 46.01 3.01
1354 4460 2.289631 CGATAGCAGGCCATATTGGTGA 60.290 50.000 5.01 0.00 40.46 4.02
1355 4461 2.079158 CGATAGCAGGCCATATTGGTG 58.921 52.381 5.01 0.00 40.46 4.17
1356 4462 1.699634 ACGATAGCAGGCCATATTGGT 59.300 47.619 5.01 1.88 39.11 3.67
1357 4463 2.479566 ACGATAGCAGGCCATATTGG 57.520 50.000 5.01 0.00 39.77 3.16
1358 4464 4.142816 GCTAAACGATAGCAGGCCATATTG 60.143 45.833 5.01 6.92 40.14 1.90
1367 4473 5.898606 CGAAAAATGAGCTAAACGATAGCAG 59.101 40.000 21.10 0.27 42.68 4.24
1368 4474 5.726688 GCGAAAAATGAGCTAAACGATAGCA 60.727 40.000 21.10 7.35 42.68 3.49
1369 4475 4.666618 GCGAAAAATGAGCTAAACGATAGC 59.333 41.667 14.39 14.39 40.67 2.97
1371 4477 5.788055 TGCGAAAAATGAGCTAAACGATA 57.212 34.783 0.00 0.00 0.00 2.92
1375 4481 4.201618 GGCAATGCGAAAAATGAGCTAAAC 60.202 41.667 0.00 0.00 0.00 2.01
1403 4519 2.126071 TGCGTCTTAGCACGAGGC 60.126 61.111 8.03 3.43 42.92 4.70
1417 4533 2.416547 AGATTCGAACCAATGACTTGCG 59.583 45.455 0.00 0.00 0.00 4.85
1422 4538 7.571026 CATTCTATCAGATTCGAACCAATGAC 58.429 38.462 0.00 0.00 0.00 3.06
1432 4548 7.144661 AGTAGACAAGCATTCTATCAGATTCG 58.855 38.462 0.00 0.00 0.00 3.34
1474 4590 9.250624 TGAGAAAGTTTCGAAAACAAAGAAAAA 57.749 25.926 13.10 0.00 35.91 1.94
1514 4630 9.495382 AAGGGATTCTAGATTAGTTCAGTAAGT 57.505 33.333 0.00 0.00 0.00 2.24
1518 4634 9.674068 GAAAAAGGGATTCTAGATTAGTTCAGT 57.326 33.333 0.00 0.00 0.00 3.41
1577 4693 7.939781 TCCTCTACCTTTTAGGGAAATTCATT 58.060 34.615 0.00 0.00 40.58 2.57
1666 4782 4.780815 TCCAAAGCAAAGAGTCTTTCTGA 58.219 39.130 15.35 7.15 35.91 3.27
1673 4789 5.091261 TCCTAGATCCAAAGCAAAGAGTC 57.909 43.478 0.00 0.00 0.00 3.36
1772 4893 1.093972 CCGTGCCATCATGCAAAGTA 58.906 50.000 0.00 0.00 44.11 2.24
1794 4921 1.211457 CATCCACTTCTTCCCCTCCTG 59.789 57.143 0.00 0.00 0.00 3.86
1799 4926 0.902531 TCGACATCCACTTCTTCCCC 59.097 55.000 0.00 0.00 0.00 4.81
1823 4950 0.465705 TCTCCTTGGCGATGTCCATC 59.534 55.000 0.00 0.00 35.77 3.51
1922 5049 0.040958 GCAAGTTCAGTTGGCAGTCG 60.041 55.000 0.00 0.00 0.00 4.18
1929 5056 3.807622 TCGAAGGTTAGCAAGTTCAGTTG 59.192 43.478 0.00 0.00 0.00 3.16
2000 5127 2.050144 AGCTTTGAACTCACCTCTCCA 58.950 47.619 0.00 0.00 0.00 3.86
2026 5153 7.137490 TGCTCATCAAAAGATACTTTGACAG 57.863 36.000 1.12 2.76 45.52 3.51
2076 5566 7.014230 CCTTGGGTTAGAAGAAACTTGAATTGA 59.986 37.037 0.00 0.00 0.00 2.57
2240 5730 1.079127 CGAGCCCGGTCTTCAATGT 60.079 57.895 0.00 0.00 0.00 2.71
2244 5734 1.595993 CTCTTCGAGCCCGGTCTTCA 61.596 60.000 0.00 0.00 36.24 3.02
2374 5864 5.804692 TTATGTAACGTAATGGGCTTGTG 57.195 39.130 0.00 0.00 0.00 3.33
2389 5879 4.421131 ACCAAAGGGCCACATTTATGTAA 58.579 39.130 6.18 0.00 36.85 2.41
2390 5880 4.054359 ACCAAAGGGCCACATTTATGTA 57.946 40.909 6.18 0.00 36.85 2.29
2391 5881 2.901291 ACCAAAGGGCCACATTTATGT 58.099 42.857 6.18 0.87 38.73 2.29
2392 5882 3.260380 TCAACCAAAGGGCCACATTTATG 59.740 43.478 6.18 3.35 37.90 1.90
2393 5883 3.260632 GTCAACCAAAGGGCCACATTTAT 59.739 43.478 6.18 0.00 37.90 1.40
2394 5884 2.630580 GTCAACCAAAGGGCCACATTTA 59.369 45.455 6.18 0.00 37.90 1.40
2395 5885 1.416030 GTCAACCAAAGGGCCACATTT 59.584 47.619 6.18 0.00 37.90 2.32
2396 5886 1.047801 GTCAACCAAAGGGCCACATT 58.952 50.000 6.18 0.00 37.90 2.71
2424 6088 2.358193 TATTCGGGATGTGCGGTCCG 62.358 60.000 6.99 6.99 43.42 4.79
2481 6145 4.515567 ACTTTGCTAAAGAAAGAAGACCGG 59.484 41.667 0.00 0.00 41.02 5.28
2500 6164 4.559862 ATCCCATCAAGACGAGAACTTT 57.440 40.909 0.00 0.00 0.00 2.66
2509 6173 9.832445 TGAAATACTACTAAATCCCATCAAGAC 57.168 33.333 0.00 0.00 0.00 3.01
2557 6221 7.095187 CCAATATGAGGACGAAGCCTATAAAAC 60.095 40.741 0.00 0.00 38.73 2.43
2638 6302 6.818644 TGATGTACCTTGAGAAGTTTAGCATC 59.181 38.462 0.00 0.00 0.00 3.91
2641 6305 6.818644 TGATGATGTACCTTGAGAAGTTTAGC 59.181 38.462 0.00 0.00 0.00 3.09
2749 6415 7.655732 GGCTTTTGTTACCATGTTTGATAAGTT 59.344 33.333 0.00 0.00 0.00 2.66
2774 6440 4.094887 CAGTGGTATTGGAATCAGTTTCGG 59.905 45.833 0.00 0.00 34.98 4.30
2896 6562 8.920509 TTTCATAAAATGAGAGCATGAACATG 57.079 30.769 10.04 10.04 40.94 3.21
2902 6568 7.318141 ACAGGTTTTCATAAAATGAGAGCATG 58.682 34.615 7.17 7.17 40.41 4.06
2998 6664 1.670811 CCAATAACCTGTGATCACGCC 59.329 52.381 20.54 0.00 0.00 5.68
3002 6668 2.509548 CTCCCCCAATAACCTGTGATCA 59.490 50.000 0.00 0.00 0.00 2.92
3343 7009 6.981762 ACTGTCAATGATCTGAAAAGCTAG 57.018 37.500 0.00 0.00 0.00 3.42
3422 7088 4.461781 CCCAAAGCTTCATCTTGAGAACAT 59.538 41.667 0.00 0.00 0.00 2.71
3487 7153 3.222603 ACCAGGTGCTTACCTCAAAAAG 58.777 45.455 0.00 0.00 38.22 2.27
3643 7309 7.338710 TCTAGATTGTTAGGATCTGGTTTTGG 58.661 38.462 0.00 0.00 35.56 3.28
3773 7439 2.159170 GCAAGTCGAGCTGGAGATAAGT 60.159 50.000 0.00 0.00 0.00 2.24
3818 7484 3.822735 AGTAACCGTTCTGTAGTAGTGCA 59.177 43.478 0.00 0.00 0.00 4.57
3875 7541 3.118038 GGATTACTAGTGATGGGTTGGCA 60.118 47.826 4.64 0.00 0.00 4.92
3884 7550 4.279145 ACCAGTGACGGATTACTAGTGAT 58.721 43.478 5.39 1.90 0.00 3.06
3943 7609 2.143925 GCGTCTCTACTGCAAAAACCT 58.856 47.619 0.00 0.00 0.00 3.50
4018 7684 4.439968 GGAGGGAGTAACATTTTACGGAG 58.560 47.826 0.00 0.00 42.28 4.63
4019 7685 3.119029 CGGAGGGAGTAACATTTTACGGA 60.119 47.826 0.00 0.00 42.28 4.69
4020 7686 3.119029 TCGGAGGGAGTAACATTTTACGG 60.119 47.826 0.00 0.00 42.28 4.02
4021 7687 4.114058 TCGGAGGGAGTAACATTTTACG 57.886 45.455 0.00 0.00 42.28 3.18
4022 7688 5.055144 GGATCGGAGGGAGTAACATTTTAC 58.945 45.833 0.00 0.00 38.34 2.01
4023 7689 4.717778 TGGATCGGAGGGAGTAACATTTTA 59.282 41.667 0.00 0.00 0.00 1.52
4024 7690 3.521937 TGGATCGGAGGGAGTAACATTTT 59.478 43.478 0.00 0.00 0.00 1.82
4070 7736 8.895932 ATTGTCGCTGATTTAGTACAAATTTC 57.104 30.769 0.00 0.00 37.68 2.17
4134 7800 4.159321 TGTGCAAAACAAATCTCCTGTCAA 59.841 37.500 0.00 0.00 35.24 3.18
4415 8100 4.520492 GCATATTCAATCCGGAATTCAGGT 59.480 41.667 21.93 8.79 38.41 4.00
4426 8111 5.049129 GGCAACTCTGTAGCATATTCAATCC 60.049 44.000 0.00 0.00 0.00 3.01
4551 8236 3.039252 ACTAGCAGCTCAAGGGATAGT 57.961 47.619 0.00 0.00 0.00 2.12
4564 8249 7.201350 GGCGATTAAAATTGTTGAAACTAGCAG 60.201 37.037 0.00 0.00 0.00 4.24
4745 8434 7.697691 ACTTTGTAATAAATGAGCGATCCTTG 58.302 34.615 0.00 0.00 0.00 3.61
4892 8582 3.513515 TGTGGGGAATATGCAAAAGAACC 59.486 43.478 0.00 0.00 0.00 3.62
5024 8715 3.254166 TCCTCTTTGATCTGCAACAAAGC 59.746 43.478 23.69 2.32 46.86 3.51
5095 8786 9.148104 GTTGATAACTCCAACTCGTAGTTAAAT 57.852 33.333 0.00 0.00 38.72 1.40
5193 8884 9.667107 TCTCGACCATTTTGAAGTTTAGAATAT 57.333 29.630 0.00 0.00 0.00 1.28
5194 8885 9.667107 ATCTCGACCATTTTGAAGTTTAGAATA 57.333 29.630 0.00 0.00 0.00 1.75
5195 8886 7.979444 TCTCGACCATTTTGAAGTTTAGAAT 57.021 32.000 0.00 0.00 0.00 2.40
5315 9006 1.474077 GCCATGTTGCCCAAGTTCTAG 59.526 52.381 0.00 0.00 0.00 2.43
5316 9007 1.544724 GCCATGTTGCCCAAGTTCTA 58.455 50.000 0.00 0.00 0.00 2.10
5318 9009 1.293179 GGCCATGTTGCCCAAGTTC 59.707 57.895 0.00 0.00 46.11 3.01
5328 9019 5.216622 TGTAGAAGTAGGATAGGCCATGTT 58.783 41.667 5.01 0.00 40.02 2.71
5673 9369 3.667087 GGCAGTGGTCGAATGCAA 58.333 55.556 9.49 0.00 41.78 4.08
5826 9522 5.008019 CAGATGCCAATCGCTTGTATAAAGT 59.992 40.000 0.00 0.00 37.92 2.66
5954 9650 4.397420 ACACAGGTGCTGATACAAATTGA 58.603 39.130 0.00 0.00 35.18 2.57
5964 9660 2.104572 GAGGCAGACACAGGTGCTGA 62.105 60.000 20.36 0.00 39.76 4.26
5965 9661 1.670406 GAGGCAGACACAGGTGCTG 60.670 63.158 15.05 15.05 39.76 4.41
5966 9662 2.142761 TGAGGCAGACACAGGTGCT 61.143 57.895 0.00 0.00 39.76 4.40
5967 9663 1.963338 GTGAGGCAGACACAGGTGC 60.963 63.158 0.00 0.00 38.05 5.01
5968 9664 0.179048 TTGTGAGGCAGACACAGGTG 60.179 55.000 10.77 0.00 46.44 4.00
5969 9665 0.767375 ATTGTGAGGCAGACACAGGT 59.233 50.000 10.77 4.07 46.44 4.00
5970 9666 2.768253 TATTGTGAGGCAGACACAGG 57.232 50.000 10.77 0.00 46.44 4.00
5971 9667 4.005650 ACATTATTGTGAGGCAGACACAG 58.994 43.478 10.77 4.23 46.44 3.66
5972 9668 4.019792 ACATTATTGTGAGGCAGACACA 57.980 40.909 7.79 7.79 44.76 3.72
5973 9669 4.455533 TGAACATTATTGTGAGGCAGACAC 59.544 41.667 0.00 0.00 35.83 3.67
5974 9670 4.650734 TGAACATTATTGTGAGGCAGACA 58.349 39.130 0.00 0.00 35.83 3.41
5975 9671 5.182001 ACTTGAACATTATTGTGAGGCAGAC 59.818 40.000 0.00 0.00 35.83 3.51
5994 9690 4.167319 TGGCATAGGGATATAGCACTTGA 58.833 43.478 0.00 0.00 0.00 3.02
5995 9691 4.558226 TGGCATAGGGATATAGCACTTG 57.442 45.455 0.00 0.00 0.00 3.16
6013 9709 1.527433 GGTCCAGGCAGTTTCTTGGC 61.527 60.000 0.00 0.00 43.41 4.52
6026 9722 1.542915 CCAACAAGCAATCAGGTCCAG 59.457 52.381 0.00 0.00 0.00 3.86
6036 9732 5.302568 ACTTGATTGAAGATCCAACAAGCAA 59.697 36.000 19.02 19.02 42.65 3.91
6058 9754 7.064253 GCACACCGACATCTAAAATTAGTAACT 59.936 37.037 0.46 0.00 32.61 2.24
6059 9755 7.148540 TGCACACCGACATCTAAAATTAGTAAC 60.149 37.037 0.46 0.00 32.61 2.50
6239 9935 6.184068 TCCAGCTGTAACAGGCATTAATTAA 58.816 36.000 13.81 0.00 31.21 1.40
6240 9936 5.750524 TCCAGCTGTAACAGGCATTAATTA 58.249 37.500 13.81 0.00 31.21 1.40
6241 9937 4.599041 TCCAGCTGTAACAGGCATTAATT 58.401 39.130 13.81 0.00 31.21 1.40
6242 9938 4.235079 TCCAGCTGTAACAGGCATTAAT 57.765 40.909 13.81 0.00 31.21 1.40
6600 10296 8.391075 AGGATTGTCATTTAACTCGAAAGAAA 57.609 30.769 0.00 0.00 41.32 2.52
6613 10309 5.507637 AGCATCAGAAGAGGATTGTCATTT 58.492 37.500 0.00 0.00 0.00 2.32
6636 10332 6.923508 CGTTATGTATCTTAGCATGAACCTGA 59.076 38.462 0.00 0.00 0.00 3.86
6668 10364 5.876460 TCAGTCATGTCGATTTCAACATCAT 59.124 36.000 0.00 0.00 33.92 2.45
6702 10398 6.429385 GGCATGATAGAATTACCTTCTTCTGG 59.571 42.308 0.00 0.00 41.60 3.86
6724 10420 1.484038 AGAGTTTGTGCCAAAAGGCA 58.516 45.000 4.86 4.86 43.05 4.75
6729 10425 5.659440 AGAAAGAAAGAGTTTGTGCCAAA 57.341 34.783 0.00 0.00 0.00 3.28
6776 10491 7.377766 TCTTGCCACTCAAATACTGAAATAC 57.622 36.000 0.00 0.00 33.65 1.89
6941 10656 9.309516 ACGATACACGAACTATTATGTTTTGAT 57.690 29.630 0.00 0.00 45.77 2.57
7041 10756 3.960571 ACCATTTCAGATTCCACCTCTG 58.039 45.455 0.00 0.00 41.23 3.35
7104 10819 9.976511 ATAATTCAGAATTTCATACAAGGCATG 57.023 29.630 13.71 0.00 32.38 4.06
7150 10865 2.194271 GACGCTGACCTGCAATAGTAC 58.806 52.381 0.00 0.00 0.00 2.73
7164 10879 3.443037 CTTATCTCTCAACCTGACGCTG 58.557 50.000 0.00 0.00 0.00 5.18
7166 10881 2.197577 GCTTATCTCTCAACCTGACGC 58.802 52.381 0.00 0.00 0.00 5.19
7174 10889 6.352516 GGAAGAATTCTGGCTTATCTCTCAA 58.647 40.000 9.17 0.00 46.56 3.02
7188 10903 1.482593 ACGCTCATCGGGAAGAATTCT 59.517 47.619 0.88 0.88 42.91 2.40
7192 10907 1.138883 CGACGCTCATCGGGAAGAA 59.861 57.895 0.00 0.00 43.86 2.52
7196 10911 1.172812 ATCATCGACGCTCATCGGGA 61.173 55.000 0.00 2.20 42.50 5.14
7198 10913 0.239613 AGATCATCGACGCTCATCGG 59.760 55.000 0.00 0.00 42.50 4.18
7200 10915 2.695613 TGAGATCATCGACGCTCATC 57.304 50.000 0.00 0.00 32.85 2.92
7212 10927 5.596361 GTCCCTAAACAGAGAGATGAGATCA 59.404 44.000 0.00 0.00 0.00 2.92
7230 10945 2.123428 GGCCGCTACTTCGTCCCTA 61.123 63.158 0.00 0.00 0.00 3.53
7350 11065 1.523095 GCTCAGACGTTCAAGACACAC 59.477 52.381 0.00 0.00 0.00 3.82
7396 11114 1.545428 GGGAGCACACCACAGAAATGA 60.545 52.381 0.00 0.00 0.00 2.57
7437 11155 1.680735 GAACTGGCACCAAACATCACA 59.319 47.619 0.00 0.00 0.00 3.58
7438 11156 1.956477 AGAACTGGCACCAAACATCAC 59.044 47.619 0.00 0.00 0.00 3.06
7439 11157 1.955778 CAGAACTGGCACCAAACATCA 59.044 47.619 0.00 0.00 0.00 3.07
7440 11158 1.956477 ACAGAACTGGCACCAAACATC 59.044 47.619 6.76 0.00 34.19 3.06
7441 11159 1.956477 GACAGAACTGGCACCAAACAT 59.044 47.619 2.50 0.00 38.82 2.71
7464 11182 7.972832 CACTGGCACCAAACATTTTTAATTTTT 59.027 29.630 0.00 0.00 0.00 1.94
7465 11183 7.121907 ACACTGGCACCAAACATTTTTAATTTT 59.878 29.630 0.00 0.00 0.00 1.82
7466 11184 6.601217 ACACTGGCACCAAACATTTTTAATTT 59.399 30.769 0.00 0.00 0.00 1.82
7467 11185 6.118852 ACACTGGCACCAAACATTTTTAATT 58.881 32.000 0.00 0.00 0.00 1.40
7468 11186 5.679601 ACACTGGCACCAAACATTTTTAAT 58.320 33.333 0.00 0.00 0.00 1.40
7469 11187 5.091261 ACACTGGCACCAAACATTTTTAA 57.909 34.783 0.00 0.00 0.00 1.52
7470 11188 4.160439 TGACACTGGCACCAAACATTTTTA 59.840 37.500 0.00 0.00 0.00 1.52
7471 11189 3.055530 TGACACTGGCACCAAACATTTTT 60.056 39.130 0.00 0.00 0.00 1.94
7472 11190 2.499289 TGACACTGGCACCAAACATTTT 59.501 40.909 0.00 0.00 0.00 1.82
7473 11191 2.106566 TGACACTGGCACCAAACATTT 58.893 42.857 0.00 0.00 0.00 2.32
7474 11192 1.408702 GTGACACTGGCACCAAACATT 59.591 47.619 3.28 0.00 0.00 2.71
7494 11212 5.422331 TCTTGACTGAACCTGAACCTATAGG 59.578 44.000 17.73 17.73 40.01 2.57
7518 11236 1.001974 TGTAGAAACACCGCAGCTCAT 59.998 47.619 0.00 0.00 0.00 2.90
7578 11296 1.349357 TGTGCATAGGCCAACACAGTA 59.651 47.619 5.01 0.00 38.07 2.74
7624 11367 5.613329 ACTTGGTATAAAAACAGGACACGA 58.387 37.500 0.00 0.00 0.00 4.35
7635 11378 9.238368 CCCAGTTTTCATAGACTTGGTATAAAA 57.762 33.333 0.00 0.00 0.00 1.52
7639 11382 5.044846 AGCCCAGTTTTCATAGACTTGGTAT 60.045 40.000 0.00 0.00 32.72 2.73
7676 11419 1.144936 GCCTAGGACAAGCGAGCAT 59.855 57.895 14.75 0.00 0.00 3.79
7677 11420 1.617018 ATGCCTAGGACAAGCGAGCA 61.617 55.000 14.75 0.00 0.00 4.26
7678 11421 0.878086 GATGCCTAGGACAAGCGAGC 60.878 60.000 14.75 0.00 0.00 5.03
7679 11422 0.596083 CGATGCCTAGGACAAGCGAG 60.596 60.000 14.75 0.00 0.00 5.03
7680 11423 1.320344 ACGATGCCTAGGACAAGCGA 61.320 55.000 24.28 2.44 0.00 4.93
7683 11426 4.686554 GCTATAAACGATGCCTAGGACAAG 59.313 45.833 14.75 10.93 0.00 3.16
7722 11475 5.126869 CCCTATCTCATCTACCAGCATACTG 59.873 48.000 0.00 0.00 44.05 2.74
7724 11477 4.404073 CCCCTATCTCATCTACCAGCATAC 59.596 50.000 0.00 0.00 0.00 2.39
7725 11478 4.045974 ACCCCTATCTCATCTACCAGCATA 59.954 45.833 0.00 0.00 0.00 3.14
7726 11479 3.181402 ACCCCTATCTCATCTACCAGCAT 60.181 47.826 0.00 0.00 0.00 3.79
7727 11480 2.180086 ACCCCTATCTCATCTACCAGCA 59.820 50.000 0.00 0.00 0.00 4.41
7728 11481 2.896039 ACCCCTATCTCATCTACCAGC 58.104 52.381 0.00 0.00 0.00 4.85
7729 11482 5.366768 TGAAAACCCCTATCTCATCTACCAG 59.633 44.000 0.00 0.00 0.00 4.00
7730 11483 5.130477 GTGAAAACCCCTATCTCATCTACCA 59.870 44.000 0.00 0.00 0.00 3.25
7731 11484 5.454897 GGTGAAAACCCCTATCTCATCTACC 60.455 48.000 0.00 0.00 0.00 3.18
7744 11497 4.462834 CCTTCTATTTCAGGTGAAAACCCC 59.537 45.833 9.13 0.00 45.81 4.95
7748 11501 4.218417 GCTGCCTTCTATTTCAGGTGAAAA 59.782 41.667 9.13 0.00 45.81 2.29
7875 11634 2.505777 CAGCAGCTCGTCGGTCTG 60.506 66.667 0.00 9.36 0.00 3.51
7961 11720 1.864711 GCTTGTGTGCGTTTAGACAGA 59.135 47.619 0.00 0.00 0.00 3.41
7976 11735 2.260869 ATTGCGCCGAACAGCTTGT 61.261 52.632 4.18 0.00 0.00 3.16
8013 11772 4.526970 AGAGCAACAAAGTGAAGAAAGGA 58.473 39.130 0.00 0.00 0.00 3.36
8079 11838 0.675522 ACCCCATTACAAGGTTCGCG 60.676 55.000 0.00 0.00 0.00 5.87
8216 11977 6.047511 AGGTGAGTAGATATCATTGATGGC 57.952 41.667 9.46 1.45 0.00 4.40
8223 11984 5.083122 CCAGGTGAGGTGAGTAGATATCAT 58.917 45.833 5.32 0.00 0.00 2.45
8232 11993 1.152247 TGCTCCAGGTGAGGTGAGT 60.152 57.895 0.00 0.00 41.73 3.41
8236 11997 0.115349 ACTAGTGCTCCAGGTGAGGT 59.885 55.000 0.00 0.00 41.73 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.