Multiple sequence alignment - TraesCS1A01G234400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G234400 chr1A 100.000 4837 0 0 1 4837 409839736 409834900 0.000000e+00 8933.0
1 TraesCS1A01G234400 chr1B 89.739 2495 180 32 2255 4724 441629642 441632085 0.000000e+00 3120.0
2 TraesCS1A01G234400 chr1B 88.222 1715 138 29 566 2269 441627959 441629620 0.000000e+00 1989.0
3 TraesCS1A01G234400 chr1B 100.000 30 0 0 4736 4765 441638253 441638282 6.760000e-04 56.5
4 TraesCS1A01G234400 chr1D 92.668 1623 91 14 2261 3873 326965965 326967569 0.000000e+00 2313.0
5 TraesCS1A01G234400 chr1D 88.072 1878 135 35 417 2266 326964116 326965932 0.000000e+00 2145.0
6 TraesCS1A01G234400 chr1D 90.471 997 66 18 3861 4837 326967961 326968948 0.000000e+00 1288.0
7 TraesCS1A01G234400 chr1D 70.192 520 112 32 161 657 25438996 25439495 1.450000e-05 62.1
8 TraesCS1A01G234400 chr3B 72.888 509 103 24 172 660 666805357 666805850 5.050000e-30 143.0
9 TraesCS1A01G234400 chr3B 89.394 66 7 0 184 249 384264946 384264881 3.100000e-12 84.2
10 TraesCS1A01G234400 chr7B 83.516 91 12 3 161 249 12950658 12950569 1.120000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G234400 chr1A 409834900 409839736 4836 True 8933.000000 8933 100.000000 1 4837 1 chr1A.!!$R1 4836
1 TraesCS1A01G234400 chr1B 441627959 441632085 4126 False 2554.500000 3120 88.980500 566 4724 2 chr1B.!!$F2 4158
2 TraesCS1A01G234400 chr1D 326964116 326968948 4832 False 1915.333333 2313 90.403667 417 4837 3 chr1D.!!$F2 4420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.034477 CCCTTGTTGGCGGGATAACT 60.034 55.0 0.0 0.00 43.44 2.24 F
457 458 0.036164 TGGTGATTGTCTTCGGTGGG 59.964 55.0 0.0 0.00 0.00 4.61 F
907 919 0.037232 ACCTTGAGCTTCGCTACACC 60.037 55.0 0.0 0.00 39.88 4.16 F
908 920 0.247736 CCTTGAGCTTCGCTACACCT 59.752 55.0 0.0 0.00 39.88 4.00 F
1475 1502 0.457851 AGGAAGCACGGAGAATCGAG 59.542 55.0 0.0 0.00 34.37 4.04 F
3169 3264 0.109132 GCCGTTTTGCATCAGAAGGG 60.109 55.0 0.0 4.95 36.83 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1550 1577 0.745486 CAACCGCTCTGATGGCATCA 60.745 55.000 27.24 27.24 37.76 3.07 R
1886 1928 2.286872 CCTCTTCAGCCTGCACATTAG 58.713 52.381 0.00 0.00 0.00 1.73 R
2607 2697 2.664916 CCAGTGCCAGAATTTTCAACG 58.335 47.619 0.00 0.00 0.00 4.10 R
2827 2917 3.305471 GGGAGCGTGACATACTTCTATCC 60.305 52.174 0.00 0.00 0.00 2.59 R
3275 3370 0.036388 CGCCTGGAAGCTTTGGTAGA 60.036 55.000 0.00 0.00 0.00 2.59 R
3977 4476 0.616111 ATGAGTCGGAGGCTTGGAGT 60.616 55.000 0.00 0.00 45.33 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.552365 TAGCGCCTGATGCCAGCC 62.552 66.667 2.29 0.00 39.07 4.85
19 20 4.552365 GCGCCTGATGCCAGCCTA 62.552 66.667 0.00 0.00 39.07 3.93
20 21 2.280660 CGCCTGATGCCAGCCTAG 60.281 66.667 0.00 0.00 39.07 3.02
21 22 2.112718 GCCTGATGCCAGCCTAGG 59.887 66.667 3.67 3.67 39.07 3.02
22 23 2.750657 GCCTGATGCCAGCCTAGGT 61.751 63.158 11.31 0.00 39.07 3.08
23 24 1.918253 CCTGATGCCAGCCTAGGTT 59.082 57.895 11.31 0.00 39.07 3.50
24 25 0.179034 CCTGATGCCAGCCTAGGTTC 60.179 60.000 11.31 0.00 39.07 3.62
25 26 0.531532 CTGATGCCAGCCTAGGTTCG 60.532 60.000 11.31 0.00 33.07 3.95
26 27 1.889573 GATGCCAGCCTAGGTTCGC 60.890 63.158 11.31 9.69 0.00 4.70
27 28 3.406595 ATGCCAGCCTAGGTTCGCC 62.407 63.158 12.47 0.00 37.60 5.54
29 30 2.501610 CCAGCCTAGGTTCGCCTC 59.498 66.667 11.31 0.00 46.86 4.70
30 31 2.060980 CCAGCCTAGGTTCGCCTCT 61.061 63.158 11.31 0.00 46.86 3.69
31 32 1.142748 CAGCCTAGGTTCGCCTCTG 59.857 63.158 11.31 3.24 46.86 3.35
32 33 2.060980 AGCCTAGGTTCGCCTCTGG 61.061 63.158 11.31 0.00 46.86 3.86
33 34 2.359967 GCCTAGGTTCGCCTCTGGT 61.360 63.158 11.31 0.00 46.86 4.00
34 35 1.517832 CCTAGGTTCGCCTCTGGTG 59.482 63.158 0.00 0.00 46.86 4.17
35 36 0.970937 CCTAGGTTCGCCTCTGGTGA 60.971 60.000 0.00 0.00 46.86 4.02
36 37 0.173708 CTAGGTTCGCCTCTGGTGAC 59.826 60.000 0.00 0.00 46.86 3.67
37 38 0.541063 TAGGTTCGCCTCTGGTGACA 60.541 55.000 0.00 0.00 46.86 3.58
38 39 1.194781 AGGTTCGCCTCTGGTGACAT 61.195 55.000 0.00 0.00 46.86 3.06
39 40 1.021390 GGTTCGCCTCTGGTGACATG 61.021 60.000 0.00 0.00 42.31 3.21
40 41 1.375908 TTCGCCTCTGGTGACATGC 60.376 57.895 0.00 0.00 42.31 4.06
41 42 3.190849 CGCCTCTGGTGACATGCG 61.191 66.667 0.00 0.00 43.07 4.73
42 43 2.265739 GCCTCTGGTGACATGCGA 59.734 61.111 0.00 0.00 41.51 5.10
43 44 2.103042 GCCTCTGGTGACATGCGAC 61.103 63.158 0.00 0.00 41.51 5.19
44 45 1.593787 CCTCTGGTGACATGCGACT 59.406 57.895 0.00 0.00 41.51 4.18
45 46 0.036952 CCTCTGGTGACATGCGACTT 60.037 55.000 0.00 0.00 41.51 3.01
46 47 1.073964 CTCTGGTGACATGCGACTTG 58.926 55.000 0.00 0.00 41.51 3.16
47 48 0.320683 TCTGGTGACATGCGACTTGG 60.321 55.000 0.00 0.00 41.51 3.61
48 49 0.603707 CTGGTGACATGCGACTTGGT 60.604 55.000 0.00 0.00 41.51 3.67
49 50 0.682292 TGGTGACATGCGACTTGGTA 59.318 50.000 0.00 0.00 33.40 3.25
50 51 1.277842 TGGTGACATGCGACTTGGTAT 59.722 47.619 0.00 0.00 33.40 2.73
51 52 2.290008 TGGTGACATGCGACTTGGTATT 60.290 45.455 0.00 0.00 33.40 1.89
52 53 2.747446 GGTGACATGCGACTTGGTATTT 59.253 45.455 0.00 0.00 0.00 1.40
53 54 3.190535 GGTGACATGCGACTTGGTATTTT 59.809 43.478 0.00 0.00 0.00 1.82
54 55 4.158384 GTGACATGCGACTTGGTATTTTG 58.842 43.478 0.00 0.00 0.00 2.44
55 56 3.818210 TGACATGCGACTTGGTATTTTGT 59.182 39.130 0.00 0.00 0.00 2.83
56 57 4.083537 TGACATGCGACTTGGTATTTTGTC 60.084 41.667 0.00 0.00 33.37 3.18
57 58 3.818210 ACATGCGACTTGGTATTTTGTCA 59.182 39.130 0.00 0.00 0.00 3.58
58 59 4.277174 ACATGCGACTTGGTATTTTGTCAA 59.723 37.500 0.00 0.00 0.00 3.18
59 60 4.902443 TGCGACTTGGTATTTTGTCAAA 57.098 36.364 0.00 0.00 0.00 2.69
60 61 5.250235 TGCGACTTGGTATTTTGTCAAAA 57.750 34.783 12.97 12.97 34.41 2.44
61 62 5.837437 TGCGACTTGGTATTTTGTCAAAAT 58.163 33.333 23.40 23.40 43.19 1.82
62 63 6.971602 TGCGACTTGGTATTTTGTCAAAATA 58.028 32.000 21.61 21.61 41.16 1.40
63 64 7.426410 TGCGACTTGGTATTTTGTCAAAATAA 58.574 30.769 25.32 15.05 42.97 1.40
64 65 7.380065 TGCGACTTGGTATTTTGTCAAAATAAC 59.620 33.333 28.16 28.16 46.40 1.89
76 77 9.872757 TTTTGTCAAAATAACAGATTACGACTC 57.127 29.630 6.65 0.00 0.00 3.36
77 78 8.596271 TTGTCAAAATAACAGATTACGACTCA 57.404 30.769 0.00 0.00 0.00 3.41
78 79 8.239681 TGTCAAAATAACAGATTACGACTCAG 57.760 34.615 0.00 0.00 0.00 3.35
79 80 7.870954 TGTCAAAATAACAGATTACGACTCAGT 59.129 33.333 0.00 0.00 0.00 3.41
80 81 8.709646 GTCAAAATAACAGATTACGACTCAGTT 58.290 33.333 0.00 0.00 0.00 3.16
81 82 9.268268 TCAAAATAACAGATTACGACTCAGTTT 57.732 29.630 0.00 0.00 0.00 2.66
82 83 9.318041 CAAAATAACAGATTACGACTCAGTTTG 57.682 33.333 0.00 0.00 0.00 2.93
83 84 4.992381 AACAGATTACGACTCAGTTTGC 57.008 40.909 0.00 0.00 0.00 3.68
84 85 2.987149 ACAGATTACGACTCAGTTTGCG 59.013 45.455 0.00 0.00 0.00 4.85
85 86 2.345641 CAGATTACGACTCAGTTTGCGG 59.654 50.000 0.00 0.00 0.00 5.69
86 87 2.029290 AGATTACGACTCAGTTTGCGGT 60.029 45.455 0.00 0.00 0.00 5.68
87 88 2.228138 TTACGACTCAGTTTGCGGTT 57.772 45.000 0.00 0.00 0.00 4.44
88 89 1.493772 TACGACTCAGTTTGCGGTTG 58.506 50.000 0.00 0.00 0.00 3.77
89 90 0.461339 ACGACTCAGTTTGCGGTTGT 60.461 50.000 0.00 0.00 0.00 3.32
90 91 0.655733 CGACTCAGTTTGCGGTTGTT 59.344 50.000 0.00 0.00 0.00 2.83
91 92 1.594518 CGACTCAGTTTGCGGTTGTTG 60.595 52.381 0.00 0.00 0.00 3.33
92 93 1.668751 GACTCAGTTTGCGGTTGTTGA 59.331 47.619 0.00 0.00 0.00 3.18
93 94 2.088423 ACTCAGTTTGCGGTTGTTGAA 58.912 42.857 0.00 0.00 0.00 2.69
94 95 2.159435 ACTCAGTTTGCGGTTGTTGAAC 60.159 45.455 0.00 0.00 0.00 3.18
95 96 1.813178 TCAGTTTGCGGTTGTTGAACA 59.187 42.857 0.00 0.00 33.27 3.18
96 97 2.159448 TCAGTTTGCGGTTGTTGAACAG 60.159 45.455 0.00 0.00 33.27 3.16
97 98 1.816224 AGTTTGCGGTTGTTGAACAGT 59.184 42.857 0.00 0.00 33.27 3.55
98 99 1.917303 GTTTGCGGTTGTTGAACAGTG 59.083 47.619 0.00 0.00 33.27 3.66
99 100 1.169577 TTGCGGTTGTTGAACAGTGT 58.830 45.000 0.00 0.00 33.27 3.55
100 101 1.169577 TGCGGTTGTTGAACAGTGTT 58.830 45.000 8.61 8.61 33.27 3.32
101 102 1.135546 TGCGGTTGTTGAACAGTGTTG 60.136 47.619 14.57 0.00 33.27 3.33
102 103 1.797348 GCGGTTGTTGAACAGTGTTGG 60.797 52.381 14.57 0.00 33.27 3.77
103 104 1.202245 CGGTTGTTGAACAGTGTTGGG 60.202 52.381 14.57 0.00 33.27 4.12
104 105 1.822371 GGTTGTTGAACAGTGTTGGGT 59.178 47.619 14.57 0.00 33.27 4.51
105 106 2.416701 GGTTGTTGAACAGTGTTGGGTG 60.417 50.000 14.57 0.00 33.27 4.61
106 107 2.208132 TGTTGAACAGTGTTGGGTGT 57.792 45.000 14.57 0.00 0.00 4.16
107 108 2.520069 TGTTGAACAGTGTTGGGTGTT 58.480 42.857 14.57 0.00 39.62 3.32
108 109 3.687125 TGTTGAACAGTGTTGGGTGTTA 58.313 40.909 14.57 0.00 37.02 2.41
109 110 4.274147 TGTTGAACAGTGTTGGGTGTTAT 58.726 39.130 14.57 0.00 37.02 1.89
110 111 4.707448 TGTTGAACAGTGTTGGGTGTTATT 59.293 37.500 14.57 0.00 37.02 1.40
111 112 4.909696 TGAACAGTGTTGGGTGTTATTG 57.090 40.909 14.57 0.00 37.02 1.90
112 113 4.274147 TGAACAGTGTTGGGTGTTATTGT 58.726 39.130 14.57 0.00 37.02 2.71
113 114 4.707448 TGAACAGTGTTGGGTGTTATTGTT 59.293 37.500 14.57 0.00 37.02 2.83
114 115 5.186021 TGAACAGTGTTGGGTGTTATTGTTT 59.814 36.000 14.57 0.00 37.02 2.83
115 116 5.669164 ACAGTGTTGGGTGTTATTGTTTT 57.331 34.783 0.00 0.00 0.00 2.43
116 117 6.777213 ACAGTGTTGGGTGTTATTGTTTTA 57.223 33.333 0.00 0.00 0.00 1.52
117 118 7.354751 ACAGTGTTGGGTGTTATTGTTTTAT 57.645 32.000 0.00 0.00 0.00 1.40
118 119 8.466617 ACAGTGTTGGGTGTTATTGTTTTATA 57.533 30.769 0.00 0.00 0.00 0.98
119 120 8.915036 ACAGTGTTGGGTGTTATTGTTTTATAA 58.085 29.630 0.00 0.00 0.00 0.98
120 121 9.921637 CAGTGTTGGGTGTTATTGTTTTATAAT 57.078 29.630 0.00 0.00 0.00 1.28
142 143 9.773328 ATAATCTGTTGTACAATTGAATTCACG 57.227 29.630 13.59 2.38 0.00 4.35
143 144 6.612247 TCTGTTGTACAATTGAATTCACGT 57.388 33.333 13.59 8.47 0.00 4.49
144 145 6.426327 TCTGTTGTACAATTGAATTCACGTG 58.574 36.000 13.59 9.94 0.00 4.49
145 146 5.515184 TGTTGTACAATTGAATTCACGTGG 58.485 37.500 17.00 0.13 0.00 4.94
146 147 4.153958 TGTACAATTGAATTCACGTGGC 57.846 40.909 17.00 7.36 0.00 5.01
147 148 2.723124 ACAATTGAATTCACGTGGCC 57.277 45.000 17.00 0.00 0.00 5.36
148 149 2.238521 ACAATTGAATTCACGTGGCCT 58.761 42.857 17.00 0.00 0.00 5.19
149 150 2.627699 ACAATTGAATTCACGTGGCCTT 59.372 40.909 17.00 6.79 0.00 4.35
150 151 3.823873 ACAATTGAATTCACGTGGCCTTA 59.176 39.130 17.00 0.00 0.00 2.69
151 152 4.082787 ACAATTGAATTCACGTGGCCTTAG 60.083 41.667 17.00 0.00 0.00 2.18
152 153 2.107950 TGAATTCACGTGGCCTTAGG 57.892 50.000 17.00 0.00 0.00 2.69
153 154 1.339631 TGAATTCACGTGGCCTTAGGG 60.340 52.381 17.00 0.00 0.00 3.53
154 155 0.696501 AATTCACGTGGCCTTAGGGT 59.303 50.000 17.00 0.00 34.45 4.34
155 156 0.696501 ATTCACGTGGCCTTAGGGTT 59.303 50.000 17.00 0.00 34.45 4.11
156 157 0.035739 TTCACGTGGCCTTAGGGTTC 59.964 55.000 17.00 0.00 34.45 3.62
157 158 0.834687 TCACGTGGCCTTAGGGTTCT 60.835 55.000 17.00 0.00 34.45 3.01
158 159 0.036306 CACGTGGCCTTAGGGTTCTT 59.964 55.000 7.95 0.00 34.45 2.52
159 160 0.323957 ACGTGGCCTTAGGGTTCTTC 59.676 55.000 3.32 0.00 34.45 2.87
160 161 0.739813 CGTGGCCTTAGGGTTCTTCG 60.740 60.000 3.32 0.00 34.45 3.79
161 162 1.025113 GTGGCCTTAGGGTTCTTCGC 61.025 60.000 3.32 0.00 34.45 4.70
162 163 1.451567 GGCCTTAGGGTTCTTCGCC 60.452 63.158 0.00 0.00 34.45 5.54
163 164 1.602771 GCCTTAGGGTTCTTCGCCT 59.397 57.895 0.00 0.00 34.45 5.52
164 165 0.462225 GCCTTAGGGTTCTTCGCCTC 60.462 60.000 0.00 0.00 34.45 4.70
165 166 0.178301 CCTTAGGGTTCTTCGCCTCC 59.822 60.000 0.00 0.00 0.00 4.30
166 167 0.178301 CTTAGGGTTCTTCGCCTCCC 59.822 60.000 0.00 0.00 40.16 4.30
167 168 1.610554 TTAGGGTTCTTCGCCTCCCG 61.611 60.000 0.00 0.00 44.13 5.14
185 186 3.842923 CCGGTGCTGCCTCGATCT 61.843 66.667 12.14 0.00 34.25 2.75
186 187 2.490148 CCGGTGCTGCCTCGATCTA 61.490 63.158 12.14 0.00 34.25 1.98
187 188 1.299468 CGGTGCTGCCTCGATCTAC 60.299 63.158 5.95 0.00 34.25 2.59
188 189 1.068250 GGTGCTGCCTCGATCTACC 59.932 63.158 0.00 0.00 0.00 3.18
189 190 1.395826 GGTGCTGCCTCGATCTACCT 61.396 60.000 0.00 0.00 0.00 3.08
190 191 0.461961 GTGCTGCCTCGATCTACCTT 59.538 55.000 0.00 0.00 0.00 3.50
191 192 0.461548 TGCTGCCTCGATCTACCTTG 59.538 55.000 0.00 0.00 0.00 3.61
192 193 0.461961 GCTGCCTCGATCTACCTTGT 59.538 55.000 0.00 0.00 0.00 3.16
193 194 1.537135 GCTGCCTCGATCTACCTTGTC 60.537 57.143 0.00 0.00 0.00 3.18
194 195 2.028130 CTGCCTCGATCTACCTTGTCT 58.972 52.381 0.00 0.00 0.00 3.41
195 196 2.025155 TGCCTCGATCTACCTTGTCTC 58.975 52.381 0.00 0.00 0.00 3.36
196 197 1.338655 GCCTCGATCTACCTTGTCTCC 59.661 57.143 0.00 0.00 0.00 3.71
197 198 1.957877 CCTCGATCTACCTTGTCTCCC 59.042 57.143 0.00 0.00 0.00 4.30
198 199 1.604755 CTCGATCTACCTTGTCTCCCG 59.395 57.143 0.00 0.00 0.00 5.14
199 200 1.064906 TCGATCTACCTTGTCTCCCGT 60.065 52.381 0.00 0.00 0.00 5.28
200 201 1.065701 CGATCTACCTTGTCTCCCGTG 59.934 57.143 0.00 0.00 0.00 4.94
201 202 1.409427 GATCTACCTTGTCTCCCGTGG 59.591 57.143 0.00 0.00 0.00 4.94
202 203 0.113776 TCTACCTTGTCTCCCGTGGT 59.886 55.000 0.00 0.00 35.05 4.16
203 204 0.531200 CTACCTTGTCTCCCGTGGTC 59.469 60.000 0.00 0.00 32.74 4.02
204 205 0.113776 TACCTTGTCTCCCGTGGTCT 59.886 55.000 0.00 0.00 32.74 3.85
205 206 0.763223 ACCTTGTCTCCCGTGGTCTT 60.763 55.000 0.00 0.00 0.00 3.01
206 207 1.263356 CCTTGTCTCCCGTGGTCTTA 58.737 55.000 0.00 0.00 0.00 2.10
207 208 1.204941 CCTTGTCTCCCGTGGTCTTAG 59.795 57.143 0.00 0.00 0.00 2.18
208 209 1.204941 CTTGTCTCCCGTGGTCTTAGG 59.795 57.143 0.00 0.00 0.00 2.69
209 210 0.613853 TGTCTCCCGTGGTCTTAGGG 60.614 60.000 0.00 0.00 46.40 3.53
210 211 1.684734 TCTCCCGTGGTCTTAGGGC 60.685 63.158 0.00 0.00 44.70 5.19
211 212 2.686106 TCCCGTGGTCTTAGGGCC 60.686 66.667 0.00 0.00 44.70 5.80
212 213 3.006728 CCCGTGGTCTTAGGGCCA 61.007 66.667 6.18 0.00 38.51 5.36
213 214 2.375345 CCCGTGGTCTTAGGGCCAT 61.375 63.158 6.18 0.00 38.51 4.40
214 215 1.153168 CCGTGGTCTTAGGGCCATG 60.153 63.158 10.67 10.67 40.49 3.66
215 216 1.153168 CGTGGTCTTAGGGCCATGG 60.153 63.158 9.80 7.63 37.94 3.66
216 217 1.622607 CGTGGTCTTAGGGCCATGGA 61.623 60.000 18.40 0.00 37.94 3.41
217 218 0.181350 GTGGTCTTAGGGCCATGGAG 59.819 60.000 18.40 3.03 37.09 3.86
218 219 0.988145 TGGTCTTAGGGCCATGGAGG 60.988 60.000 18.40 0.00 41.84 4.30
228 229 3.526211 CCATGGAGGCACAATGGAT 57.474 52.632 12.58 0.00 34.46 3.41
229 230 1.784358 CCATGGAGGCACAATGGATT 58.216 50.000 12.58 0.00 34.46 3.01
230 231 1.684983 CCATGGAGGCACAATGGATTC 59.315 52.381 12.58 0.00 34.46 2.52
231 232 2.662866 CATGGAGGCACAATGGATTCT 58.337 47.619 0.00 0.00 0.00 2.40
232 233 2.133281 TGGAGGCACAATGGATTCTG 57.867 50.000 0.00 0.00 0.00 3.02
233 234 1.634973 TGGAGGCACAATGGATTCTGA 59.365 47.619 0.00 0.00 0.00 3.27
234 235 2.019984 GGAGGCACAATGGATTCTGAC 58.980 52.381 0.00 0.00 0.00 3.51
235 236 2.019984 GAGGCACAATGGATTCTGACC 58.980 52.381 0.00 0.00 0.00 4.02
236 237 1.106285 GGCACAATGGATTCTGACCC 58.894 55.000 0.00 0.00 0.00 4.46
237 238 1.341383 GGCACAATGGATTCTGACCCT 60.341 52.381 0.00 0.00 0.00 4.34
238 239 2.450476 GCACAATGGATTCTGACCCTT 58.550 47.619 0.00 0.00 0.00 3.95
239 240 2.165030 GCACAATGGATTCTGACCCTTG 59.835 50.000 0.00 0.00 38.40 3.61
240 241 3.424703 CACAATGGATTCTGACCCTTGT 58.575 45.455 0.00 0.00 43.30 3.16
241 242 3.828451 CACAATGGATTCTGACCCTTGTT 59.172 43.478 0.00 0.00 41.64 2.83
242 243 3.828451 ACAATGGATTCTGACCCTTGTTG 59.172 43.478 0.00 5.33 41.10 3.33
243 244 2.584835 TGGATTCTGACCCTTGTTGG 57.415 50.000 0.00 0.00 0.00 3.77
244 245 1.177401 GGATTCTGACCCTTGTTGGC 58.823 55.000 0.00 0.00 0.00 4.52
245 246 0.804989 GATTCTGACCCTTGTTGGCG 59.195 55.000 0.00 0.00 0.00 5.69
246 247 0.609131 ATTCTGACCCTTGTTGGCGG 60.609 55.000 0.00 0.00 0.00 6.13
247 248 2.672996 CTGACCCTTGTTGGCGGG 60.673 66.667 0.00 0.00 46.26 6.13
248 249 3.172106 TGACCCTTGTTGGCGGGA 61.172 61.111 0.58 0.00 43.44 5.14
249 250 2.355115 GACCCTTGTTGGCGGGAT 59.645 61.111 0.58 0.00 43.44 3.85
250 251 1.202099 TGACCCTTGTTGGCGGGATA 61.202 55.000 0.58 0.00 43.44 2.59
251 252 0.034863 GACCCTTGTTGGCGGGATAA 60.035 55.000 0.58 0.00 43.44 1.75
252 253 0.323087 ACCCTTGTTGGCGGGATAAC 60.323 55.000 0.58 0.00 43.44 1.89
253 254 0.034477 CCCTTGTTGGCGGGATAACT 60.034 55.000 0.00 0.00 43.44 2.24
254 255 1.379527 CCTTGTTGGCGGGATAACTC 58.620 55.000 0.00 0.00 0.00 3.01
255 256 1.339631 CCTTGTTGGCGGGATAACTCA 60.340 52.381 0.00 0.00 0.00 3.41
256 257 2.643551 CTTGTTGGCGGGATAACTCAT 58.356 47.619 0.00 0.00 0.00 2.90
257 258 2.036958 TGTTGGCGGGATAACTCATG 57.963 50.000 0.00 0.00 0.00 3.07
258 259 0.663153 GTTGGCGGGATAACTCATGC 59.337 55.000 0.00 0.00 0.00 4.06
259 260 0.546122 TTGGCGGGATAACTCATGCT 59.454 50.000 0.00 0.00 0.00 3.79
260 261 0.546122 TGGCGGGATAACTCATGCTT 59.454 50.000 0.00 0.00 0.00 3.91
261 262 1.230324 GGCGGGATAACTCATGCTTC 58.770 55.000 0.00 0.00 0.00 3.86
262 263 1.475034 GGCGGGATAACTCATGCTTCA 60.475 52.381 0.00 0.00 0.00 3.02
263 264 2.498167 GCGGGATAACTCATGCTTCAT 58.502 47.619 0.00 0.00 0.00 2.57
264 265 2.880890 GCGGGATAACTCATGCTTCATT 59.119 45.455 0.00 0.00 0.00 2.57
265 266 3.316308 GCGGGATAACTCATGCTTCATTT 59.684 43.478 0.00 0.00 0.00 2.32
266 267 4.202050 GCGGGATAACTCATGCTTCATTTT 60.202 41.667 0.00 0.00 0.00 1.82
267 268 5.679638 GCGGGATAACTCATGCTTCATTTTT 60.680 40.000 0.00 0.00 0.00 1.94
268 269 6.459573 GCGGGATAACTCATGCTTCATTTTTA 60.460 38.462 0.00 0.00 0.00 1.52
269 270 7.134815 CGGGATAACTCATGCTTCATTTTTAG 58.865 38.462 0.00 0.00 0.00 1.85
270 271 7.428826 GGGATAACTCATGCTTCATTTTTAGG 58.571 38.462 0.00 0.00 0.00 2.69
271 272 7.068716 GGGATAACTCATGCTTCATTTTTAGGT 59.931 37.037 0.00 0.00 0.00 3.08
272 273 7.917505 GGATAACTCATGCTTCATTTTTAGGTG 59.082 37.037 0.00 0.00 0.00 4.00
273 274 6.655078 AACTCATGCTTCATTTTTAGGTGT 57.345 33.333 0.00 0.00 0.00 4.16
274 275 6.655078 ACTCATGCTTCATTTTTAGGTGTT 57.345 33.333 0.00 0.00 0.00 3.32
275 276 7.054491 ACTCATGCTTCATTTTTAGGTGTTT 57.946 32.000 0.00 0.00 0.00 2.83
276 277 7.500141 ACTCATGCTTCATTTTTAGGTGTTTT 58.500 30.769 0.00 0.00 0.00 2.43
277 278 7.986889 ACTCATGCTTCATTTTTAGGTGTTTTT 59.013 29.630 0.00 0.00 0.00 1.94
314 315 6.899114 AGTTTGTGTTCTATTTAGAAAGGCG 58.101 36.000 1.71 0.00 43.30 5.52
315 316 6.708949 AGTTTGTGTTCTATTTAGAAAGGCGA 59.291 34.615 1.71 0.00 43.30 5.54
316 317 6.476243 TTGTGTTCTATTTAGAAAGGCGAC 57.524 37.500 1.71 0.00 43.30 5.19
317 318 4.624024 TGTGTTCTATTTAGAAAGGCGACG 59.376 41.667 1.71 0.00 43.30 5.12
318 319 4.624452 GTGTTCTATTTAGAAAGGCGACGT 59.376 41.667 1.71 0.00 43.30 4.34
319 320 4.624024 TGTTCTATTTAGAAAGGCGACGTG 59.376 41.667 0.00 0.00 43.30 4.49
320 321 3.777478 TCTATTTAGAAAGGCGACGTGG 58.223 45.455 0.00 0.00 0.00 4.94
321 322 1.084289 ATTTAGAAAGGCGACGTGGC 58.916 50.000 14.82 14.82 45.27 5.01
333 334 2.900528 ACGTGGCGTCTTCTTCTTG 58.099 52.632 0.00 0.00 33.69 3.02
334 335 0.387929 ACGTGGCGTCTTCTTCTTGA 59.612 50.000 0.00 0.00 33.69 3.02
335 336 1.202486 ACGTGGCGTCTTCTTCTTGAA 60.202 47.619 0.00 0.00 33.69 2.69
336 337 1.192534 CGTGGCGTCTTCTTCTTGAAC 59.807 52.381 0.00 0.00 0.00 3.18
337 338 2.210116 GTGGCGTCTTCTTCTTGAACA 58.790 47.619 0.00 0.00 0.00 3.18
338 339 2.221981 GTGGCGTCTTCTTCTTGAACAG 59.778 50.000 0.00 0.00 0.00 3.16
339 340 1.801178 GGCGTCTTCTTCTTGAACAGG 59.199 52.381 0.00 0.00 0.00 4.00
340 341 1.801178 GCGTCTTCTTCTTGAACAGGG 59.199 52.381 0.00 0.00 0.00 4.45
341 342 1.801178 CGTCTTCTTCTTGAACAGGGC 59.199 52.381 0.00 0.00 0.00 5.19
342 343 2.806745 CGTCTTCTTCTTGAACAGGGCA 60.807 50.000 0.00 0.00 0.00 5.36
343 344 3.416156 GTCTTCTTCTTGAACAGGGCAT 58.584 45.455 0.00 0.00 0.00 4.40
344 345 4.579869 GTCTTCTTCTTGAACAGGGCATA 58.420 43.478 0.00 0.00 0.00 3.14
345 346 5.003804 GTCTTCTTCTTGAACAGGGCATAA 58.996 41.667 0.00 0.00 0.00 1.90
346 347 5.473504 GTCTTCTTCTTGAACAGGGCATAAA 59.526 40.000 0.00 0.00 0.00 1.40
347 348 6.151817 GTCTTCTTCTTGAACAGGGCATAAAT 59.848 38.462 0.00 0.00 0.00 1.40
348 349 6.721208 TCTTCTTCTTGAACAGGGCATAAATT 59.279 34.615 0.00 0.00 0.00 1.82
349 350 6.515272 TCTTCTTGAACAGGGCATAAATTC 57.485 37.500 0.00 0.00 0.00 2.17
350 351 6.248433 TCTTCTTGAACAGGGCATAAATTCT 58.752 36.000 0.00 0.00 0.00 2.40
351 352 6.375455 TCTTCTTGAACAGGGCATAAATTCTC 59.625 38.462 0.00 0.00 0.00 2.87
352 353 4.949856 TCTTGAACAGGGCATAAATTCTCC 59.050 41.667 0.00 0.00 0.00 3.71
353 354 3.631250 TGAACAGGGCATAAATTCTCCC 58.369 45.455 0.00 0.00 39.05 4.30
354 355 2.755952 ACAGGGCATAAATTCTCCCC 57.244 50.000 0.00 0.00 39.59 4.81
355 356 1.133792 ACAGGGCATAAATTCTCCCCG 60.134 52.381 0.00 0.00 40.71 5.73
356 357 0.178990 AGGGCATAAATTCTCCCCGC 60.179 55.000 0.00 0.00 40.71 6.13
357 358 1.179174 GGGCATAAATTCTCCCCGCC 61.179 60.000 0.00 0.00 37.33 6.13
358 359 0.178990 GGCATAAATTCTCCCCGCCT 60.179 55.000 0.00 0.00 35.17 5.52
359 360 1.073284 GGCATAAATTCTCCCCGCCTA 59.927 52.381 0.00 0.00 35.17 3.93
360 361 2.427506 GCATAAATTCTCCCCGCCTAG 58.572 52.381 0.00 0.00 0.00 3.02
361 362 2.427506 CATAAATTCTCCCCGCCTAGC 58.572 52.381 0.00 0.00 0.00 3.42
362 363 0.763035 TAAATTCTCCCCGCCTAGCC 59.237 55.000 0.00 0.00 0.00 3.93
363 364 1.996070 AAATTCTCCCCGCCTAGCCC 61.996 60.000 0.00 0.00 0.00 5.19
373 374 3.470888 CCTAGCCCCCGTCCAGTG 61.471 72.222 0.00 0.00 0.00 3.66
374 375 3.470888 CTAGCCCCCGTCCAGTGG 61.471 72.222 1.40 1.40 0.00 4.00
375 376 4.326227 TAGCCCCCGTCCAGTGGT 62.326 66.667 9.54 0.00 0.00 4.16
381 382 3.991051 CCGTCCAGTGGTGCGTCT 61.991 66.667 20.93 0.00 0.00 4.18
382 383 2.430921 CGTCCAGTGGTGCGTCTC 60.431 66.667 9.54 0.00 0.00 3.36
383 384 2.430921 GTCCAGTGGTGCGTCTCG 60.431 66.667 9.54 0.00 0.00 4.04
394 395 4.276945 CGTCTCGCATCGTCAGAG 57.723 61.111 0.00 0.00 0.00 3.35
395 396 1.716172 CGTCTCGCATCGTCAGAGA 59.284 57.895 0.00 0.00 38.55 3.10
396 397 0.097150 CGTCTCGCATCGTCAGAGAA 59.903 55.000 0.00 0.00 41.93 2.87
397 398 1.821336 GTCTCGCATCGTCAGAGAAG 58.179 55.000 0.00 0.00 41.93 2.85
398 399 0.735471 TCTCGCATCGTCAGAGAAGG 59.265 55.000 0.00 0.00 38.00 3.46
399 400 0.453793 CTCGCATCGTCAGAGAAGGT 59.546 55.000 0.00 0.00 34.13 3.50
400 401 0.171231 TCGCATCGTCAGAGAAGGTG 59.829 55.000 0.00 0.00 0.00 4.00
401 402 0.109086 CGCATCGTCAGAGAAGGTGT 60.109 55.000 0.00 0.00 0.00 4.16
402 403 1.354040 GCATCGTCAGAGAAGGTGTG 58.646 55.000 0.00 0.00 0.00 3.82
403 404 2.001812 CATCGTCAGAGAAGGTGTGG 57.998 55.000 0.00 0.00 0.00 4.17
404 405 1.546029 CATCGTCAGAGAAGGTGTGGA 59.454 52.381 0.00 0.00 0.00 4.02
405 406 1.248486 TCGTCAGAGAAGGTGTGGAG 58.752 55.000 0.00 0.00 0.00 3.86
406 407 0.244994 CGTCAGAGAAGGTGTGGAGG 59.755 60.000 0.00 0.00 0.00 4.30
407 408 1.343069 GTCAGAGAAGGTGTGGAGGT 58.657 55.000 0.00 0.00 0.00 3.85
408 409 1.001406 GTCAGAGAAGGTGTGGAGGTG 59.999 57.143 0.00 0.00 0.00 4.00
409 410 1.051812 CAGAGAAGGTGTGGAGGTGT 58.948 55.000 0.00 0.00 0.00 4.16
410 411 2.158370 TCAGAGAAGGTGTGGAGGTGTA 60.158 50.000 0.00 0.00 0.00 2.90
411 412 2.834549 CAGAGAAGGTGTGGAGGTGTAT 59.165 50.000 0.00 0.00 0.00 2.29
412 413 3.100671 AGAGAAGGTGTGGAGGTGTATC 58.899 50.000 0.00 0.00 0.00 2.24
413 414 3.100671 GAGAAGGTGTGGAGGTGTATCT 58.899 50.000 0.00 0.00 0.00 1.98
414 415 3.515901 GAGAAGGTGTGGAGGTGTATCTT 59.484 47.826 0.00 0.00 0.00 2.40
415 416 3.910627 AGAAGGTGTGGAGGTGTATCTTT 59.089 43.478 0.00 0.00 0.00 2.52
420 421 2.039746 TGTGGAGGTGTATCTTTGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
426 427 3.133003 AGGTGTATCTTTGGTGGATCTCG 59.867 47.826 0.00 0.00 0.00 4.04
428 429 2.766263 TGTATCTTTGGTGGATCTCGCT 59.234 45.455 0.00 0.00 0.00 4.93
435 436 1.609072 TGGTGGATCTCGCTAGATTCG 59.391 52.381 1.78 0.00 42.73 3.34
437 438 1.609555 GTGGATCTCGCTAGATTCGGT 59.390 52.381 1.78 0.00 42.73 4.69
441 442 1.471119 TCTCGCTAGATTCGGTTGGT 58.529 50.000 0.00 0.00 0.00 3.67
442 443 1.134367 TCTCGCTAGATTCGGTTGGTG 59.866 52.381 0.00 0.00 0.00 4.17
443 444 1.134367 CTCGCTAGATTCGGTTGGTGA 59.866 52.381 0.00 0.00 0.00 4.02
456 457 1.535462 GTTGGTGATTGTCTTCGGTGG 59.465 52.381 0.00 0.00 0.00 4.61
457 458 0.036164 TGGTGATTGTCTTCGGTGGG 59.964 55.000 0.00 0.00 0.00 4.61
463 464 0.105964 TTGTCTTCGGTGGGTCTGTG 59.894 55.000 0.00 0.00 0.00 3.66
477 478 3.222603 GGTCTGTGTGGATTTGGTCTTT 58.777 45.455 0.00 0.00 0.00 2.52
485 486 5.411669 GTGTGGATTTGGTCTTTATTCGTCT 59.588 40.000 0.00 0.00 0.00 4.18
488 489 4.494199 GGATTTGGTCTTTATTCGTCTGCG 60.494 45.833 0.00 0.00 39.92 5.18
489 490 1.355971 TGGTCTTTATTCGTCTGCGC 58.644 50.000 0.00 0.00 38.14 6.09
498 499 1.698714 TTCGTCTGCGCTCATGCATG 61.699 55.000 21.07 21.07 45.26 4.06
508 509 2.086869 GCTCATGCATGTACAGGTTGT 58.913 47.619 25.43 0.00 39.41 3.32
511 512 4.336433 GCTCATGCATGTACAGGTTGTATT 59.664 41.667 25.43 0.00 35.73 1.89
512 513 5.504665 GCTCATGCATGTACAGGTTGTATTC 60.505 44.000 25.43 0.00 35.73 1.75
516 517 6.494893 TGCATGTACAGGTTGTATTCTTTC 57.505 37.500 9.57 0.00 35.05 2.62
539 540 5.470437 TCGATATACGCTTCTCTTCATCAGT 59.530 40.000 0.00 0.00 42.26 3.41
540 541 6.649557 TCGATATACGCTTCTCTTCATCAGTA 59.350 38.462 0.00 0.00 42.26 2.74
541 542 6.958752 CGATATACGCTTCTCTTCATCAGTAG 59.041 42.308 0.00 0.00 34.51 2.57
542 543 7.360522 CGATATACGCTTCTCTTCATCAGTAGT 60.361 40.741 0.00 0.00 34.51 2.73
546 547 4.619394 CGCTTCTCTTCATCAGTAGTGGTT 60.619 45.833 0.00 0.00 0.00 3.67
551 552 7.482169 TCTCTTCATCAGTAGTGGTTAATGT 57.518 36.000 0.00 0.00 0.00 2.71
559 560 5.071250 TCAGTAGTGGTTAATGTTCTGGTGT 59.929 40.000 0.00 0.00 0.00 4.16
562 563 2.621055 GTGGTTAATGTTCTGGTGTGCA 59.379 45.455 0.00 0.00 0.00 4.57
583 594 1.719780 GGACTTAGCACGACGACTTTG 59.280 52.381 0.00 0.00 0.00 2.77
595 606 3.306818 GACGACTTTGTGACTGTCTACC 58.693 50.000 9.51 0.00 0.00 3.18
639 650 3.371097 GAGAGCGGGGCAATGACGA 62.371 63.158 0.00 0.00 0.00 4.20
640 651 3.195698 GAGCGGGGCAATGACGAC 61.196 66.667 0.00 0.00 0.00 4.34
677 689 2.412089 CGCTAAGTGCTTGTAGTTGTCC 59.588 50.000 0.00 0.00 40.11 4.02
684 696 5.269991 AGTGCTTGTAGTTGTCCCTAGATA 58.730 41.667 0.00 0.00 0.00 1.98
695 707 6.440647 AGTTGTCCCTAGATAGTTGAACATGA 59.559 38.462 0.00 0.00 0.00 3.07
855 867 2.666526 GCGATTGGGCGGAGGATC 60.667 66.667 0.00 0.00 0.00 3.36
900 912 2.755929 GGCTACACCTTGAGCTTCG 58.244 57.895 0.00 0.00 38.79 3.79
901 913 1.362406 GGCTACACCTTGAGCTTCGC 61.362 60.000 0.00 0.00 38.79 4.70
902 914 0.390472 GCTACACCTTGAGCTTCGCT 60.390 55.000 0.00 0.00 43.88 4.93
903 915 1.135083 GCTACACCTTGAGCTTCGCTA 60.135 52.381 0.00 0.00 39.88 4.26
904 916 2.531206 CTACACCTTGAGCTTCGCTAC 58.469 52.381 0.00 0.00 39.88 3.58
905 917 0.679505 ACACCTTGAGCTTCGCTACA 59.320 50.000 0.00 0.00 39.88 2.74
906 918 1.071605 CACCTTGAGCTTCGCTACAC 58.928 55.000 0.00 0.00 39.88 2.90
907 919 0.037232 ACCTTGAGCTTCGCTACACC 60.037 55.000 0.00 0.00 39.88 4.16
908 920 0.247736 CCTTGAGCTTCGCTACACCT 59.752 55.000 0.00 0.00 39.88 4.00
909 921 1.338200 CCTTGAGCTTCGCTACACCTT 60.338 52.381 0.00 0.00 39.88 3.50
967 979 2.583319 ACGAGCGCACATCATCCG 60.583 61.111 11.47 2.10 0.00 4.18
1208 1220 8.918202 TGATTGGAAATTATATGGTCCTACAC 57.082 34.615 0.00 0.00 0.00 2.90
1209 1221 8.723365 TGATTGGAAATTATATGGTCCTACACT 58.277 33.333 0.00 0.00 0.00 3.55
1228 1240 8.338259 CCTACACTTTTTCCATGATTAAGATCG 58.662 37.037 0.00 0.00 34.91 3.69
1229 1241 7.687941 ACACTTTTTCCATGATTAAGATCGT 57.312 32.000 0.00 0.00 34.91 3.73
1230 1242 8.786826 ACACTTTTTCCATGATTAAGATCGTA 57.213 30.769 0.00 0.00 34.91 3.43
1232 1244 8.883731 CACTTTTTCCATGATTAAGATCGTACT 58.116 33.333 0.00 0.00 34.91 2.73
1233 1245 8.883731 ACTTTTTCCATGATTAAGATCGTACTG 58.116 33.333 0.00 0.00 34.91 2.74
1234 1246 9.098355 CTTTTTCCATGATTAAGATCGTACTGA 57.902 33.333 0.00 0.00 34.91 3.41
1235 1247 8.420374 TTTTCCATGATTAAGATCGTACTGAC 57.580 34.615 0.00 0.00 34.91 3.51
1236 1248 6.085555 TCCATGATTAAGATCGTACTGACC 57.914 41.667 0.00 0.00 34.91 4.02
1473 1500 0.528684 GGAGGAAGCACGGAGAATCG 60.529 60.000 0.00 0.00 34.37 3.34
1475 1502 0.457851 AGGAAGCACGGAGAATCGAG 59.542 55.000 0.00 0.00 34.37 4.04
1498 1525 3.207265 TGAAGAAGTACTGCAAAGCCA 57.793 42.857 3.00 0.00 29.99 4.75
1550 1577 2.283532 ACGCTCTCTGCCCTGTCT 60.284 61.111 0.00 0.00 38.78 3.41
1663 1690 4.473196 ACTTTGTCCAAAATTTGAACCCCT 59.527 37.500 7.37 0.00 0.00 4.79
1664 1691 4.681074 TTGTCCAAAATTTGAACCCCTC 57.319 40.909 7.37 0.00 0.00 4.30
1724 1762 8.386264 AGTTATGCTATATAAAGGCACAAGGAT 58.614 33.333 0.00 0.00 38.83 3.24
1777 1815 1.235724 GTGCGCAGTTACTTCCCTTT 58.764 50.000 12.22 0.00 0.00 3.11
1799 1839 7.490402 CCTTTGCCACTTCAGAAATTATGAATC 59.510 37.037 3.37 0.00 36.16 2.52
1822 1864 3.384789 AGTGTCCTTCCCTTTTTGCTTTC 59.615 43.478 0.00 0.00 0.00 2.62
1834 1876 5.467902 TTTTTGCTTTCATTGTGAACTGC 57.532 34.783 8.82 8.82 35.89 4.40
1853 1895 4.141620 ACTGCGGAAATGATGGATTAGAGT 60.142 41.667 0.00 0.00 0.00 3.24
2110 2152 2.872038 GCTTCAGAGGTCGGTTGATTGT 60.872 50.000 0.00 0.00 0.00 2.71
2111 2153 2.743636 TCAGAGGTCGGTTGATTGTC 57.256 50.000 0.00 0.00 0.00 3.18
2122 2164 1.196808 GTTGATTGTCGCGACATTGGT 59.803 47.619 39.38 25.55 41.52 3.67
2174 2217 5.777802 TGTTACAATTAGGCAACACCAATG 58.222 37.500 0.00 0.00 43.14 2.82
2184 2227 2.350772 GCAACACCAATGTAGCACTGAC 60.351 50.000 0.00 0.00 38.45 3.51
2204 2247 6.895756 ACTGACCATAATACCACTCTACTTCA 59.104 38.462 0.00 0.00 0.00 3.02
2205 2248 7.565398 ACTGACCATAATACCACTCTACTTCAT 59.435 37.037 0.00 0.00 0.00 2.57
2206 2249 7.726216 TGACCATAATACCACTCTACTTCATG 58.274 38.462 0.00 0.00 0.00 3.07
2209 2252 8.938883 ACCATAATACCACTCTACTTCATGATT 58.061 33.333 0.00 0.00 0.00 2.57
2210 2253 9.429359 CCATAATACCACTCTACTTCATGATTC 57.571 37.037 0.00 0.00 0.00 2.52
2213 2256 7.667575 ATACCACTCTACTTCATGATTCTGT 57.332 36.000 0.00 0.00 0.00 3.41
2215 2258 6.169094 ACCACTCTACTTCATGATTCTGTTG 58.831 40.000 0.00 0.00 0.00 3.33
2217 2260 6.312426 CCACTCTACTTCATGATTCTGTTGTC 59.688 42.308 0.00 0.00 0.00 3.18
2218 2261 6.870439 CACTCTACTTCATGATTCTGTTGTCA 59.130 38.462 0.00 0.00 0.00 3.58
2219 2262 7.548427 CACTCTACTTCATGATTCTGTTGTCAT 59.452 37.037 0.00 0.00 35.54 3.06
2220 2263 8.099537 ACTCTACTTCATGATTCTGTTGTCATT 58.900 33.333 0.00 0.00 32.98 2.57
2221 2264 9.591792 CTCTACTTCATGATTCTGTTGTCATTA 57.408 33.333 0.00 0.00 32.98 1.90
2222 2265 9.942850 TCTACTTCATGATTCTGTTGTCATTAA 57.057 29.630 0.00 0.00 32.98 1.40
2279 2359 3.233507 ACAACAAATGTGAAGGATGGCT 58.766 40.909 0.00 0.00 41.93 4.75
2293 2373 8.025445 GTGAAGGATGGCTATTGCTAATATTTG 58.975 37.037 0.00 0.00 39.59 2.32
2368 2448 7.495901 AGTACATCTGTCCATGTTTATCTGAG 58.504 38.462 0.00 0.00 38.07 3.35
2370 2450 4.142609 TCTGTCCATGTTTATCTGAGCC 57.857 45.455 0.00 0.00 0.00 4.70
2383 2463 6.814954 TTATCTGAGCCTAGTCCTTTGATT 57.185 37.500 0.00 0.00 0.00 2.57
2462 2552 4.006989 GACATGTATACAAGTTGGGCACA 58.993 43.478 14.46 7.85 0.00 4.57
2463 2553 4.402829 ACATGTATACAAGTTGGGCACAA 58.597 39.130 10.14 0.00 0.00 3.33
2532 2622 1.533625 GTCATACCCAGTTTGCAGCA 58.466 50.000 0.00 0.00 0.00 4.41
2607 2697 5.016051 TGCACAGAATGATCTACTCTTCC 57.984 43.478 0.00 0.00 39.69 3.46
2694 2784 9.442047 TTTCAGTCCAAACAATTAAACACAAAT 57.558 25.926 0.00 0.00 0.00 2.32
2696 2786 7.010923 TCAGTCCAAACAATTAAACACAAATGC 59.989 33.333 0.00 0.00 0.00 3.56
2827 2917 4.744795 ACCACCTAGATGCTGAGTAAAG 57.255 45.455 0.00 0.00 0.00 1.85
2870 2960 6.369629 TCCCTCAAGAACTGGAACAAATTAA 58.630 36.000 0.00 0.00 38.70 1.40
2967 3057 9.249053 TCAGCATTTTCTTTACACCCAATTATA 57.751 29.630 0.00 0.00 0.00 0.98
3059 3154 4.457466 TGTTAAGTCTCCCCAGTTCAAAC 58.543 43.478 0.00 0.00 0.00 2.93
3139 3234 4.511082 GTGTGTGCAATTTTTGGCATAACT 59.489 37.500 0.00 0.00 42.75 2.24
3153 3248 4.474226 GCATAACTTTCTCCTTATGCCG 57.526 45.455 10.10 0.00 45.03 5.69
3169 3264 0.109132 GCCGTTTTGCATCAGAAGGG 60.109 55.000 0.00 4.95 36.83 3.95
3170 3265 1.247567 CCGTTTTGCATCAGAAGGGT 58.752 50.000 0.00 0.00 31.68 4.34
3171 3266 1.068333 CCGTTTTGCATCAGAAGGGTG 60.068 52.381 0.00 0.00 31.68 4.61
3178 3273 4.098914 TGCATCAGAAGGGTGTTTTACT 57.901 40.909 0.00 0.00 0.00 2.24
3179 3274 3.820467 TGCATCAGAAGGGTGTTTTACTG 59.180 43.478 0.00 0.00 0.00 2.74
3191 3286 5.278808 GGGTGTTTTACTGTGATCTTTTCCC 60.279 44.000 0.00 0.00 0.00 3.97
3253 3348 8.804743 CATGATCTTTTCATAACAATGCTTCAC 58.195 33.333 0.00 0.00 43.40 3.18
3275 3370 7.568349 TCACATCAGAATGGCTAACTCTAAAT 58.432 34.615 0.00 0.00 37.19 1.40
3339 3434 3.556999 TCCTCTCTTCTTGGATAGACCG 58.443 50.000 0.00 0.00 42.61 4.79
3357 3452 5.321927 AGACCGGTTAATTTTCACTTGGAT 58.678 37.500 9.42 0.00 0.00 3.41
3363 3458 7.090173 CGGTTAATTTTCACTTGGATGACAAT 58.910 34.615 0.00 0.00 38.65 2.71
3395 3490 4.360951 TTTCTCCGTTACCCAGTGAATT 57.639 40.909 0.00 0.00 0.00 2.17
3397 3492 5.486735 TTCTCCGTTACCCAGTGAATTTA 57.513 39.130 0.00 0.00 0.00 1.40
3408 3503 6.909909 ACCCAGTGAATTTAAAAATCGAGAC 58.090 36.000 0.00 0.00 0.00 3.36
3438 3533 1.506493 GTGCCACTGTGAGAGTTCAG 58.494 55.000 9.86 0.00 37.65 3.02
3450 3545 2.675348 GAGAGTTCAGCACATACCAAGC 59.325 50.000 0.00 0.00 0.00 4.01
3483 3578 3.535561 CGAAAGCTCAGGTAATGGACAT 58.464 45.455 0.00 0.00 0.00 3.06
3648 3743 9.085645 TCATAACAAGAGAACTAAGAGTACCAA 57.914 33.333 0.00 0.00 0.00 3.67
3674 3769 3.862267 CGAAGATGATCGAGAAACAAGCT 59.138 43.478 0.00 0.00 45.48 3.74
3684 3779 3.214328 GAGAAACAAGCTGTGGAGGAAA 58.786 45.455 0.00 0.00 0.00 3.13
3731 3826 1.753078 GTTCGGGCCCCAGGAATTC 60.753 63.158 18.66 0.00 0.00 2.17
3896 4395 8.159447 TCCATTTTTGCTGATACAGATATAGCT 58.841 33.333 2.81 0.00 35.50 3.32
3904 4403 6.915300 GCTGATACAGATATAGCTCATTACCG 59.085 42.308 0.00 0.00 32.44 4.02
3908 4407 5.571285 ACAGATATAGCTCATTACCGGAGA 58.429 41.667 9.46 0.00 34.24 3.71
3914 4413 6.919775 ATAGCTCATTACCGGAGAATAACT 57.080 37.500 9.46 7.85 34.24 2.24
3949 4448 4.441792 GTCACATTTCAAGCCAAAAAGGT 58.558 39.130 0.00 0.00 40.61 3.50
3974 4473 9.872721 GTAAATATACCAGGTATAGGAAAGAGC 57.127 37.037 21.66 5.99 34.96 4.09
3975 4474 8.743636 AAATATACCAGGTATAGGAAAGAGCT 57.256 34.615 21.66 2.33 34.96 4.09
3977 4476 9.839185 AATATACCAGGTATAGGAAAGAGCTTA 57.161 33.333 21.66 0.00 34.96 3.09
3981 4480 5.011227 CCAGGTATAGGAAAGAGCTTACTCC 59.989 48.000 0.00 0.00 44.65 3.85
3982 4481 5.598830 CAGGTATAGGAAAGAGCTTACTCCA 59.401 44.000 10.51 0.00 44.65 3.86
3984 4483 6.325286 AGGTATAGGAAAGAGCTTACTCCAAG 59.675 42.308 10.51 0.00 44.65 3.61
3992 4491 3.742983 CTTACTCCAAGCCTCCGAC 57.257 57.895 0.00 0.00 0.00 4.79
3999 4518 0.742281 CCAAGCCTCCGACTCATGTG 60.742 60.000 0.00 0.00 0.00 3.21
4071 4590 2.697425 CGCCAATGCTCGTCGAAG 59.303 61.111 0.00 0.00 34.43 3.79
4200 4719 0.820891 GGATGTGGCCATAGTGCTGG 60.821 60.000 9.72 0.00 39.45 4.85
4296 4815 0.318441 TCCAGTTCTTCACCTGCTCG 59.682 55.000 0.00 0.00 0.00 5.03
4434 4953 1.068281 GATCTTGCGATCTCCTGCTGA 59.932 52.381 0.00 0.00 42.25 4.26
4514 5033 3.749064 TGCCTCGAGTGCCGTCTC 61.749 66.667 19.09 0.00 39.75 3.36
4546 5065 1.081376 ATGTCGCCGTAGCTATCGC 60.081 57.895 0.00 0.42 36.60 4.58
4653 5172 0.458543 AGAGGTTGTCTGCGCGTATG 60.459 55.000 8.43 0.00 32.57 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.179034 GAACCTAGGCTGGCATCAGG 60.179 60.000 9.30 9.27 41.19 3.86
6 7 0.531532 CGAACCTAGGCTGGCATCAG 60.532 60.000 9.30 0.00 43.64 2.90
7 8 1.522092 CGAACCTAGGCTGGCATCA 59.478 57.895 9.30 0.00 0.00 3.07
8 9 1.889573 GCGAACCTAGGCTGGCATC 60.890 63.158 13.70 0.66 0.00 3.91
9 10 2.190578 GCGAACCTAGGCTGGCAT 59.809 61.111 13.70 0.00 0.00 4.40
10 11 4.096003 GGCGAACCTAGGCTGGCA 62.096 66.667 19.27 0.00 0.00 4.92
20 21 1.021390 CATGTCACCAGAGGCGAACC 61.021 60.000 0.00 0.00 0.00 3.62
21 22 1.639298 GCATGTCACCAGAGGCGAAC 61.639 60.000 0.00 0.00 0.00 3.95
22 23 1.375908 GCATGTCACCAGAGGCGAA 60.376 57.895 0.00 0.00 0.00 4.70
23 24 2.265739 GCATGTCACCAGAGGCGA 59.734 61.111 0.00 0.00 0.00 5.54
24 25 3.190849 CGCATGTCACCAGAGGCG 61.191 66.667 0.00 0.00 34.70 5.52
25 26 2.103042 GTCGCATGTCACCAGAGGC 61.103 63.158 0.00 0.00 0.00 4.70
26 27 0.036952 AAGTCGCATGTCACCAGAGG 60.037 55.000 0.00 0.00 0.00 3.69
27 28 1.073964 CAAGTCGCATGTCACCAGAG 58.926 55.000 0.00 0.00 0.00 3.35
28 29 0.320683 CCAAGTCGCATGTCACCAGA 60.321 55.000 0.00 0.00 0.00 3.86
29 30 0.603707 ACCAAGTCGCATGTCACCAG 60.604 55.000 0.00 0.00 0.00 4.00
30 31 0.682292 TACCAAGTCGCATGTCACCA 59.318 50.000 0.00 0.00 0.00 4.17
31 32 2.024176 ATACCAAGTCGCATGTCACC 57.976 50.000 0.00 0.00 0.00 4.02
32 33 4.158384 CAAAATACCAAGTCGCATGTCAC 58.842 43.478 0.00 0.00 0.00 3.67
33 34 3.818210 ACAAAATACCAAGTCGCATGTCA 59.182 39.130 0.00 0.00 0.00 3.58
34 35 4.083537 TGACAAAATACCAAGTCGCATGTC 60.084 41.667 0.00 0.00 36.19 3.06
35 36 3.818210 TGACAAAATACCAAGTCGCATGT 59.182 39.130 0.00 0.00 33.83 3.21
36 37 4.418013 TGACAAAATACCAAGTCGCATG 57.582 40.909 0.00 0.00 33.83 4.06
37 38 5.446143 TTTGACAAAATACCAAGTCGCAT 57.554 34.783 0.00 0.00 33.83 4.73
38 39 4.902443 TTTGACAAAATACCAAGTCGCA 57.098 36.364 0.00 0.00 33.83 5.10
39 40 7.380065 TGTTATTTTGACAAAATACCAAGTCGC 59.620 33.333 25.87 12.91 41.61 5.19
40 41 8.789881 TGTTATTTTGACAAAATACCAAGTCG 57.210 30.769 25.87 0.00 41.61 4.18
41 42 9.959749 TCTGTTATTTTGACAAAATACCAAGTC 57.040 29.630 25.87 15.17 41.61 3.01
50 51 9.872757 GAGTCGTAATCTGTTATTTTGACAAAA 57.127 29.630 15.39 15.39 34.41 2.44
51 52 9.047371 TGAGTCGTAATCTGTTATTTTGACAAA 57.953 29.630 0.00 0.00 0.00 2.83
52 53 8.596271 TGAGTCGTAATCTGTTATTTTGACAA 57.404 30.769 0.00 0.00 0.00 3.18
53 54 7.870954 ACTGAGTCGTAATCTGTTATTTTGACA 59.129 33.333 0.00 0.00 0.00 3.58
54 55 8.240883 ACTGAGTCGTAATCTGTTATTTTGAC 57.759 34.615 0.00 0.00 0.00 3.18
55 56 8.827177 AACTGAGTCGTAATCTGTTATTTTGA 57.173 30.769 0.00 0.00 37.16 2.69
56 57 9.318041 CAAACTGAGTCGTAATCTGTTATTTTG 57.682 33.333 8.85 0.00 37.71 2.44
57 58 8.015658 GCAAACTGAGTCGTAATCTGTTATTTT 58.984 33.333 8.85 0.00 37.71 1.82
58 59 7.519002 GCAAACTGAGTCGTAATCTGTTATTT 58.481 34.615 8.85 0.00 37.71 1.40
59 60 6.183360 CGCAAACTGAGTCGTAATCTGTTATT 60.183 38.462 8.85 0.00 37.71 1.40
60 61 5.288712 CGCAAACTGAGTCGTAATCTGTTAT 59.711 40.000 8.85 0.00 37.71 1.89
61 62 4.619760 CGCAAACTGAGTCGTAATCTGTTA 59.380 41.667 8.85 0.00 37.71 2.41
62 63 3.428870 CGCAAACTGAGTCGTAATCTGTT 59.571 43.478 0.00 0.00 39.58 3.16
63 64 2.987149 CGCAAACTGAGTCGTAATCTGT 59.013 45.455 0.00 0.00 0.00 3.41
64 65 2.345641 CCGCAAACTGAGTCGTAATCTG 59.654 50.000 0.00 0.00 0.00 2.90
65 66 2.029290 ACCGCAAACTGAGTCGTAATCT 60.029 45.455 0.00 0.00 0.00 2.40
66 67 2.334838 ACCGCAAACTGAGTCGTAATC 58.665 47.619 0.00 0.00 0.00 1.75
67 68 2.450609 ACCGCAAACTGAGTCGTAAT 57.549 45.000 0.00 0.00 0.00 1.89
68 69 1.862201 CAACCGCAAACTGAGTCGTAA 59.138 47.619 0.00 0.00 0.00 3.18
69 70 1.202440 ACAACCGCAAACTGAGTCGTA 60.202 47.619 0.00 0.00 0.00 3.43
70 71 0.461339 ACAACCGCAAACTGAGTCGT 60.461 50.000 0.00 0.00 0.00 4.34
71 72 0.655733 AACAACCGCAAACTGAGTCG 59.344 50.000 0.00 0.00 0.00 4.18
72 73 1.668751 TCAACAACCGCAAACTGAGTC 59.331 47.619 0.00 0.00 0.00 3.36
73 74 1.745232 TCAACAACCGCAAACTGAGT 58.255 45.000 0.00 0.00 0.00 3.41
74 75 2.159448 TGTTCAACAACCGCAAACTGAG 60.159 45.455 0.00 0.00 0.00 3.35
75 76 1.813178 TGTTCAACAACCGCAAACTGA 59.187 42.857 0.00 0.00 0.00 3.41
76 77 2.184448 CTGTTCAACAACCGCAAACTG 58.816 47.619 0.00 0.00 0.00 3.16
77 78 1.816224 ACTGTTCAACAACCGCAAACT 59.184 42.857 0.00 0.00 0.00 2.66
78 79 1.917303 CACTGTTCAACAACCGCAAAC 59.083 47.619 0.00 0.00 0.00 2.93
79 80 1.542030 ACACTGTTCAACAACCGCAAA 59.458 42.857 0.00 0.00 0.00 3.68
80 81 1.169577 ACACTGTTCAACAACCGCAA 58.830 45.000 0.00 0.00 0.00 4.85
81 82 1.135546 CAACACTGTTCAACAACCGCA 60.136 47.619 0.00 0.00 0.00 5.69
82 83 1.544686 CAACACTGTTCAACAACCGC 58.455 50.000 0.00 0.00 0.00 5.68
83 84 1.202245 CCCAACACTGTTCAACAACCG 60.202 52.381 0.00 0.00 0.00 4.44
84 85 1.822371 ACCCAACACTGTTCAACAACC 59.178 47.619 0.00 0.00 0.00 3.77
85 86 2.230266 ACACCCAACACTGTTCAACAAC 59.770 45.455 0.00 0.00 0.00 3.32
86 87 2.520069 ACACCCAACACTGTTCAACAA 58.480 42.857 0.00 0.00 0.00 2.83
87 88 2.208132 ACACCCAACACTGTTCAACA 57.792 45.000 0.00 0.00 0.00 3.33
88 89 4.911514 ATAACACCCAACACTGTTCAAC 57.088 40.909 0.00 0.00 32.77 3.18
89 90 4.707448 ACAATAACACCCAACACTGTTCAA 59.293 37.500 0.00 0.00 32.77 2.69
90 91 4.274147 ACAATAACACCCAACACTGTTCA 58.726 39.130 0.00 0.00 32.77 3.18
91 92 4.911514 ACAATAACACCCAACACTGTTC 57.088 40.909 0.00 0.00 32.77 3.18
92 93 5.669164 AAACAATAACACCCAACACTGTT 57.331 34.783 0.00 0.00 34.89 3.16
93 94 5.669164 AAAACAATAACACCCAACACTGT 57.331 34.783 0.00 0.00 0.00 3.55
94 95 9.921637 ATTATAAAACAATAACACCCAACACTG 57.078 29.630 0.00 0.00 0.00 3.66
116 117 9.773328 CGTGAATTCAATTGTACAACAGATTAT 57.227 29.630 11.22 1.01 0.00 1.28
117 118 8.779303 ACGTGAATTCAATTGTACAACAGATTA 58.221 29.630 11.22 0.00 0.00 1.75
118 119 7.591057 CACGTGAATTCAATTGTACAACAGATT 59.409 33.333 10.90 8.92 0.00 2.40
119 120 7.077605 CACGTGAATTCAATTGTACAACAGAT 58.922 34.615 10.90 0.30 0.00 2.90
120 121 6.426327 CACGTGAATTCAATTGTACAACAGA 58.574 36.000 10.90 9.02 0.00 3.41
121 122 5.624900 CCACGTGAATTCAATTGTACAACAG 59.375 40.000 19.30 6.61 0.00 3.16
122 123 5.515184 CCACGTGAATTCAATTGTACAACA 58.485 37.500 19.30 0.00 0.00 3.33
123 124 4.381566 GCCACGTGAATTCAATTGTACAAC 59.618 41.667 19.30 0.00 0.00 3.32
124 125 4.541779 GCCACGTGAATTCAATTGTACAA 58.458 39.130 19.30 11.41 0.00 2.41
125 126 3.057876 GGCCACGTGAATTCAATTGTACA 60.058 43.478 19.30 0.00 0.00 2.90
126 127 3.190535 AGGCCACGTGAATTCAATTGTAC 59.809 43.478 19.30 5.40 0.00 2.90
127 128 3.417101 AGGCCACGTGAATTCAATTGTA 58.583 40.909 19.30 0.00 0.00 2.41
128 129 2.238521 AGGCCACGTGAATTCAATTGT 58.761 42.857 19.30 6.57 0.00 2.71
129 130 3.302365 AAGGCCACGTGAATTCAATTG 57.698 42.857 19.30 9.91 0.00 2.32
130 131 3.443681 CCTAAGGCCACGTGAATTCAATT 59.556 43.478 19.30 4.41 0.00 2.32
131 132 3.016736 CCTAAGGCCACGTGAATTCAAT 58.983 45.455 19.30 0.00 0.00 2.57
132 133 2.432444 CCTAAGGCCACGTGAATTCAA 58.568 47.619 19.30 0.00 0.00 2.69
133 134 1.339631 CCCTAAGGCCACGTGAATTCA 60.340 52.381 19.30 3.38 0.00 2.57
134 135 1.339727 ACCCTAAGGCCACGTGAATTC 60.340 52.381 19.30 0.00 36.11 2.17
135 136 0.696501 ACCCTAAGGCCACGTGAATT 59.303 50.000 19.30 10.87 36.11 2.17
136 137 0.696501 AACCCTAAGGCCACGTGAAT 59.303 50.000 19.30 2.25 36.11 2.57
137 138 0.035739 GAACCCTAAGGCCACGTGAA 59.964 55.000 19.30 0.00 36.11 3.18
138 139 0.834687 AGAACCCTAAGGCCACGTGA 60.835 55.000 19.30 0.00 36.11 4.35
139 140 0.036306 AAGAACCCTAAGGCCACGTG 59.964 55.000 9.08 9.08 36.11 4.49
140 141 0.323957 GAAGAACCCTAAGGCCACGT 59.676 55.000 5.01 0.00 36.11 4.49
141 142 0.739813 CGAAGAACCCTAAGGCCACG 60.740 60.000 5.01 0.00 36.11 4.94
142 143 1.025113 GCGAAGAACCCTAAGGCCAC 61.025 60.000 5.01 0.00 36.11 5.01
143 144 1.298667 GCGAAGAACCCTAAGGCCA 59.701 57.895 5.01 0.00 36.11 5.36
144 145 1.451567 GGCGAAGAACCCTAAGGCC 60.452 63.158 0.00 0.00 36.11 5.19
145 146 0.462225 GAGGCGAAGAACCCTAAGGC 60.462 60.000 0.00 0.00 36.11 4.35
146 147 0.178301 GGAGGCGAAGAACCCTAAGG 59.822 60.000 0.00 0.00 40.04 2.69
147 148 0.178301 GGGAGGCGAAGAACCCTAAG 59.822 60.000 0.00 0.00 39.28 2.18
148 149 1.610554 CGGGAGGCGAAGAACCCTAA 61.611 60.000 0.00 0.00 40.12 2.69
149 150 2.056223 CGGGAGGCGAAGAACCCTA 61.056 63.158 0.00 0.00 40.12 3.53
150 151 3.391382 CGGGAGGCGAAGAACCCT 61.391 66.667 0.00 0.00 40.12 4.34
168 169 2.490148 TAGATCGAGGCAGCACCGG 61.490 63.158 0.00 0.00 46.52 5.28
169 170 1.299468 GTAGATCGAGGCAGCACCG 60.299 63.158 0.00 0.00 46.52 4.94
170 171 1.068250 GGTAGATCGAGGCAGCACC 59.932 63.158 0.00 0.00 39.61 5.01
171 172 0.461961 AAGGTAGATCGAGGCAGCAC 59.538 55.000 0.00 0.00 0.00 4.40
172 173 0.461548 CAAGGTAGATCGAGGCAGCA 59.538 55.000 0.00 0.00 0.00 4.41
173 174 0.461961 ACAAGGTAGATCGAGGCAGC 59.538 55.000 0.00 0.00 0.00 5.25
174 175 2.028130 AGACAAGGTAGATCGAGGCAG 58.972 52.381 0.00 0.00 0.00 4.85
175 176 2.025155 GAGACAAGGTAGATCGAGGCA 58.975 52.381 0.00 0.00 0.00 4.75
176 177 1.338655 GGAGACAAGGTAGATCGAGGC 59.661 57.143 0.00 0.00 0.00 4.70
177 178 1.957877 GGGAGACAAGGTAGATCGAGG 59.042 57.143 0.00 0.00 0.00 4.63
178 179 1.604755 CGGGAGACAAGGTAGATCGAG 59.395 57.143 0.00 0.00 0.00 4.04
179 180 1.064906 ACGGGAGACAAGGTAGATCGA 60.065 52.381 0.00 0.00 0.00 3.59
180 181 1.065701 CACGGGAGACAAGGTAGATCG 59.934 57.143 0.00 0.00 0.00 3.69
181 182 1.409427 CCACGGGAGACAAGGTAGATC 59.591 57.143 0.00 0.00 0.00 2.75
182 183 1.273098 ACCACGGGAGACAAGGTAGAT 60.273 52.381 0.00 0.00 0.00 1.98
183 184 0.113776 ACCACGGGAGACAAGGTAGA 59.886 55.000 0.00 0.00 0.00 2.59
184 185 0.531200 GACCACGGGAGACAAGGTAG 59.469 60.000 0.00 0.00 31.57 3.18
185 186 0.113776 AGACCACGGGAGACAAGGTA 59.886 55.000 0.00 0.00 31.57 3.08
186 187 0.763223 AAGACCACGGGAGACAAGGT 60.763 55.000 0.00 0.00 34.76 3.50
187 188 1.204941 CTAAGACCACGGGAGACAAGG 59.795 57.143 0.00 0.00 0.00 3.61
188 189 1.204941 CCTAAGACCACGGGAGACAAG 59.795 57.143 0.00 0.00 0.00 3.16
189 190 1.263356 CCTAAGACCACGGGAGACAA 58.737 55.000 0.00 0.00 0.00 3.18
190 191 0.613853 CCCTAAGACCACGGGAGACA 60.614 60.000 0.00 0.00 40.55 3.41
191 192 1.957765 GCCCTAAGACCACGGGAGAC 61.958 65.000 0.00 0.00 40.55 3.36
192 193 1.684734 GCCCTAAGACCACGGGAGA 60.685 63.158 0.00 0.00 40.55 3.71
193 194 2.732619 GGCCCTAAGACCACGGGAG 61.733 68.421 0.00 0.00 40.55 4.30
194 195 2.686106 GGCCCTAAGACCACGGGA 60.686 66.667 0.00 0.00 40.55 5.14
195 196 2.375345 ATGGCCCTAAGACCACGGG 61.375 63.158 0.00 0.00 39.19 5.28
196 197 1.153168 CATGGCCCTAAGACCACGG 60.153 63.158 0.00 0.00 39.19 4.94
197 198 1.153168 CCATGGCCCTAAGACCACG 60.153 63.158 0.00 0.00 39.19 4.94
198 199 0.181350 CTCCATGGCCCTAAGACCAC 59.819 60.000 6.96 0.00 39.19 4.16
199 200 0.988145 CCTCCATGGCCCTAAGACCA 60.988 60.000 6.96 0.00 41.06 4.02
200 201 1.839894 CCTCCATGGCCCTAAGACC 59.160 63.158 6.96 0.00 0.00 3.85
210 211 1.684983 GAATCCATTGTGCCTCCATGG 59.315 52.381 4.97 4.97 39.35 3.66
211 212 2.361119 CAGAATCCATTGTGCCTCCATG 59.639 50.000 0.00 0.00 0.00 3.66
212 213 2.242965 TCAGAATCCATTGTGCCTCCAT 59.757 45.455 0.00 0.00 31.75 3.41
213 214 1.634973 TCAGAATCCATTGTGCCTCCA 59.365 47.619 0.00 0.00 31.75 3.86
214 215 2.019984 GTCAGAATCCATTGTGCCTCC 58.980 52.381 0.00 0.00 31.75 4.30
215 216 2.019984 GGTCAGAATCCATTGTGCCTC 58.980 52.381 0.00 0.00 31.75 4.70
216 217 1.341383 GGGTCAGAATCCATTGTGCCT 60.341 52.381 8.66 0.00 32.21 4.75
217 218 1.106285 GGGTCAGAATCCATTGTGCC 58.894 55.000 0.00 0.00 31.75 5.01
218 219 2.134789 AGGGTCAGAATCCATTGTGC 57.865 50.000 0.00 0.00 31.75 4.57
222 223 3.434309 CCAACAAGGGTCAGAATCCATT 58.566 45.455 0.00 0.00 0.00 3.16
223 224 2.885554 GCCAACAAGGGTCAGAATCCAT 60.886 50.000 0.00 0.00 38.09 3.41
224 225 1.547675 GCCAACAAGGGTCAGAATCCA 60.548 52.381 0.00 0.00 38.09 3.41
225 226 1.177401 GCCAACAAGGGTCAGAATCC 58.823 55.000 0.00 0.00 38.09 3.01
226 227 0.804989 CGCCAACAAGGGTCAGAATC 59.195 55.000 0.00 0.00 38.09 2.52
227 228 0.609131 CCGCCAACAAGGGTCAGAAT 60.609 55.000 0.00 0.00 38.09 2.40
228 229 1.228124 CCGCCAACAAGGGTCAGAA 60.228 57.895 0.00 0.00 38.09 3.02
229 230 2.429930 CCGCCAACAAGGGTCAGA 59.570 61.111 0.00 0.00 38.09 3.27
230 231 2.672996 CCCGCCAACAAGGGTCAG 60.673 66.667 0.00 0.00 42.67 3.51
235 236 1.339631 TGAGTTATCCCGCCAACAAGG 60.340 52.381 0.00 0.00 41.84 3.61
236 237 2.107950 TGAGTTATCCCGCCAACAAG 57.892 50.000 0.00 0.00 0.00 3.16
237 238 2.364632 CATGAGTTATCCCGCCAACAA 58.635 47.619 0.00 0.00 0.00 2.83
238 239 2.016604 GCATGAGTTATCCCGCCAACA 61.017 52.381 0.00 0.00 0.00 3.33
239 240 0.663153 GCATGAGTTATCCCGCCAAC 59.337 55.000 0.00 0.00 0.00 3.77
240 241 0.546122 AGCATGAGTTATCCCGCCAA 59.454 50.000 0.00 0.00 0.00 4.52
241 242 0.546122 AAGCATGAGTTATCCCGCCA 59.454 50.000 0.00 0.00 0.00 5.69
242 243 1.230324 GAAGCATGAGTTATCCCGCC 58.770 55.000 0.00 0.00 0.00 6.13
243 244 1.953559 TGAAGCATGAGTTATCCCGC 58.046 50.000 0.00 0.00 0.00 6.13
244 245 5.505173 AAAATGAAGCATGAGTTATCCCG 57.495 39.130 0.00 0.00 0.00 5.14
245 246 7.068716 ACCTAAAAATGAAGCATGAGTTATCCC 59.931 37.037 0.00 0.00 0.00 3.85
246 247 7.917505 CACCTAAAAATGAAGCATGAGTTATCC 59.082 37.037 0.00 0.00 0.00 2.59
247 248 8.462016 ACACCTAAAAATGAAGCATGAGTTATC 58.538 33.333 0.00 0.00 0.00 1.75
248 249 8.353423 ACACCTAAAAATGAAGCATGAGTTAT 57.647 30.769 0.00 0.00 0.00 1.89
249 250 7.759489 ACACCTAAAAATGAAGCATGAGTTA 57.241 32.000 0.00 0.00 0.00 2.24
250 251 6.655078 ACACCTAAAAATGAAGCATGAGTT 57.345 33.333 0.00 0.00 0.00 3.01
251 252 6.655078 AACACCTAAAAATGAAGCATGAGT 57.345 33.333 0.00 0.00 0.00 3.41
252 253 7.951530 AAAACACCTAAAAATGAAGCATGAG 57.048 32.000 0.00 0.00 0.00 2.90
288 289 7.860872 CGCCTTTCTAAATAGAACACAAACTTT 59.139 33.333 2.42 0.00 41.64 2.66
289 290 7.227910 TCGCCTTTCTAAATAGAACACAAACTT 59.772 33.333 2.42 0.00 41.64 2.66
290 291 6.708949 TCGCCTTTCTAAATAGAACACAAACT 59.291 34.615 2.42 0.00 41.64 2.66
291 292 6.795593 GTCGCCTTTCTAAATAGAACACAAAC 59.204 38.462 2.42 0.00 41.64 2.93
292 293 6.347079 CGTCGCCTTTCTAAATAGAACACAAA 60.347 38.462 2.42 0.00 41.64 2.83
293 294 5.119588 CGTCGCCTTTCTAAATAGAACACAA 59.880 40.000 2.42 0.00 41.64 3.33
294 295 4.624024 CGTCGCCTTTCTAAATAGAACACA 59.376 41.667 2.42 0.00 41.64 3.72
295 296 4.624452 ACGTCGCCTTTCTAAATAGAACAC 59.376 41.667 2.42 0.00 41.64 3.32
296 297 4.624024 CACGTCGCCTTTCTAAATAGAACA 59.376 41.667 2.42 0.00 41.64 3.18
297 298 4.032558 CCACGTCGCCTTTCTAAATAGAAC 59.967 45.833 2.42 0.00 41.64 3.01
298 299 4.178540 CCACGTCGCCTTTCTAAATAGAA 58.821 43.478 0.00 0.00 40.33 2.10
299 300 3.777478 CCACGTCGCCTTTCTAAATAGA 58.223 45.455 0.00 0.00 0.00 1.98
300 301 2.284417 GCCACGTCGCCTTTCTAAATAG 59.716 50.000 0.00 0.00 0.00 1.73
301 302 2.273557 GCCACGTCGCCTTTCTAAATA 58.726 47.619 0.00 0.00 0.00 1.40
302 303 1.084289 GCCACGTCGCCTTTCTAAAT 58.916 50.000 0.00 0.00 0.00 1.40
303 304 1.286354 CGCCACGTCGCCTTTCTAAA 61.286 55.000 0.00 0.00 0.00 1.85
304 305 1.735198 CGCCACGTCGCCTTTCTAA 60.735 57.895 0.00 0.00 0.00 2.10
305 306 2.126228 CGCCACGTCGCCTTTCTA 60.126 61.111 0.00 0.00 0.00 2.10
306 307 4.295119 ACGCCACGTCGCCTTTCT 62.295 61.111 0.00 0.00 33.69 2.52
307 308 3.774702 GACGCCACGTCGCCTTTC 61.775 66.667 4.19 0.00 46.56 2.62
315 316 0.387929 TCAAGAAGAAGACGCCACGT 59.612 50.000 0.00 0.00 45.10 4.49
316 317 1.192534 GTTCAAGAAGAAGACGCCACG 59.807 52.381 0.00 0.00 36.78 4.94
317 318 2.210116 TGTTCAAGAAGAAGACGCCAC 58.790 47.619 0.00 0.00 36.78 5.01
318 319 2.483876 CTGTTCAAGAAGAAGACGCCA 58.516 47.619 0.00 0.00 36.78 5.69
319 320 1.801178 CCTGTTCAAGAAGAAGACGCC 59.199 52.381 0.00 0.00 36.78 5.68
320 321 1.801178 CCCTGTTCAAGAAGAAGACGC 59.199 52.381 0.00 0.00 36.78 5.19
321 322 1.801178 GCCCTGTTCAAGAAGAAGACG 59.199 52.381 0.00 0.00 36.78 4.18
322 323 2.851195 TGCCCTGTTCAAGAAGAAGAC 58.149 47.619 0.00 0.00 36.78 3.01
323 324 3.795688 ATGCCCTGTTCAAGAAGAAGA 57.204 42.857 0.00 0.00 36.78 2.87
324 325 5.964958 TTTATGCCCTGTTCAAGAAGAAG 57.035 39.130 0.00 0.00 36.78 2.85
325 326 6.721208 AGAATTTATGCCCTGTTCAAGAAGAA 59.279 34.615 0.00 0.00 0.00 2.52
326 327 6.248433 AGAATTTATGCCCTGTTCAAGAAGA 58.752 36.000 0.00 0.00 0.00 2.87
327 328 6.405176 GGAGAATTTATGCCCTGTTCAAGAAG 60.405 42.308 0.00 0.00 0.00 2.85
328 329 5.418840 GGAGAATTTATGCCCTGTTCAAGAA 59.581 40.000 0.00 0.00 0.00 2.52
329 330 4.949856 GGAGAATTTATGCCCTGTTCAAGA 59.050 41.667 0.00 0.00 0.00 3.02
330 331 4.098501 GGGAGAATTTATGCCCTGTTCAAG 59.901 45.833 0.00 0.00 37.59 3.02
331 332 4.023291 GGGAGAATTTATGCCCTGTTCAA 58.977 43.478 0.00 0.00 37.59 2.69
332 333 3.627237 GGGGAGAATTTATGCCCTGTTCA 60.627 47.826 12.92 0.00 44.59 3.18
333 334 2.959030 GGGGAGAATTTATGCCCTGTTC 59.041 50.000 12.92 0.00 44.59 3.18
334 335 2.686715 CGGGGAGAATTTATGCCCTGTT 60.687 50.000 17.24 0.00 45.76 3.16
335 336 1.133792 CGGGGAGAATTTATGCCCTGT 60.134 52.381 17.24 0.00 45.76 4.00
336 337 1.609208 CGGGGAGAATTTATGCCCTG 58.391 55.000 17.24 8.19 45.76 4.45
337 338 0.178990 GCGGGGAGAATTTATGCCCT 60.179 55.000 17.24 0.00 45.76 5.19
338 339 1.179174 GGCGGGGAGAATTTATGCCC 61.179 60.000 10.38 10.38 44.55 5.36
339 340 0.178990 AGGCGGGGAGAATTTATGCC 60.179 55.000 0.00 0.00 41.27 4.40
340 341 2.427506 CTAGGCGGGGAGAATTTATGC 58.572 52.381 0.00 0.00 0.00 3.14
341 342 2.427506 GCTAGGCGGGGAGAATTTATG 58.572 52.381 0.00 0.00 0.00 1.90
342 343 1.351350 GGCTAGGCGGGGAGAATTTAT 59.649 52.381 0.00 0.00 0.00 1.40
343 344 0.763035 GGCTAGGCGGGGAGAATTTA 59.237 55.000 0.00 0.00 0.00 1.40
344 345 1.532238 GGCTAGGCGGGGAGAATTT 59.468 57.895 0.00 0.00 0.00 1.82
345 346 2.452937 GGGCTAGGCGGGGAGAATT 61.453 63.158 10.58 0.00 0.00 2.17
346 347 2.849646 GGGCTAGGCGGGGAGAAT 60.850 66.667 10.58 0.00 0.00 2.40
356 357 3.470888 CACTGGACGGGGGCTAGG 61.471 72.222 0.00 0.00 0.00 3.02
357 358 3.470888 CCACTGGACGGGGGCTAG 61.471 72.222 0.00 0.00 0.00 3.42
358 359 4.326227 ACCACTGGACGGGGGCTA 62.326 66.667 0.71 0.00 0.00 3.93
364 365 3.916392 GAGACGCACCACTGGACGG 62.916 68.421 16.20 2.15 32.21 4.79
365 366 2.430921 GAGACGCACCACTGGACG 60.431 66.667 0.71 7.84 33.59 4.79
366 367 2.430921 CGAGACGCACCACTGGAC 60.431 66.667 0.71 0.00 0.00 4.02
377 378 0.097150 TTCTCTGACGATGCGAGACG 59.903 55.000 0.00 0.00 33.85 4.18
378 379 1.532921 CCTTCTCTGACGATGCGAGAC 60.533 57.143 0.00 0.00 33.85 3.36
379 380 0.735471 CCTTCTCTGACGATGCGAGA 59.265 55.000 0.00 0.00 32.36 4.04
380 381 0.453793 ACCTTCTCTGACGATGCGAG 59.546 55.000 0.00 0.00 0.00 5.03
381 382 0.171231 CACCTTCTCTGACGATGCGA 59.829 55.000 0.00 0.00 0.00 5.10
382 383 0.109086 ACACCTTCTCTGACGATGCG 60.109 55.000 0.00 0.00 0.00 4.73
383 384 1.354040 CACACCTTCTCTGACGATGC 58.646 55.000 0.00 0.00 0.00 3.91
384 385 1.546029 TCCACACCTTCTCTGACGATG 59.454 52.381 0.00 0.00 0.00 3.84
385 386 1.821753 CTCCACACCTTCTCTGACGAT 59.178 52.381 0.00 0.00 0.00 3.73
386 387 1.248486 CTCCACACCTTCTCTGACGA 58.752 55.000 0.00 0.00 0.00 4.20
387 388 0.244994 CCTCCACACCTTCTCTGACG 59.755 60.000 0.00 0.00 0.00 4.35
388 389 1.001406 CACCTCCACACCTTCTCTGAC 59.999 57.143 0.00 0.00 0.00 3.51
389 390 1.342074 CACCTCCACACCTTCTCTGA 58.658 55.000 0.00 0.00 0.00 3.27
390 391 1.051812 ACACCTCCACACCTTCTCTG 58.948 55.000 0.00 0.00 0.00 3.35
391 392 2.696526 TACACCTCCACACCTTCTCT 57.303 50.000 0.00 0.00 0.00 3.10
392 393 3.100671 AGATACACCTCCACACCTTCTC 58.899 50.000 0.00 0.00 0.00 2.87
393 394 3.191888 AGATACACCTCCACACCTTCT 57.808 47.619 0.00 0.00 0.00 2.85
394 395 3.983044 AAGATACACCTCCACACCTTC 57.017 47.619 0.00 0.00 0.00 3.46
395 396 3.244911 CCAAAGATACACCTCCACACCTT 60.245 47.826 0.00 0.00 0.00 3.50
396 397 2.305927 CCAAAGATACACCTCCACACCT 59.694 50.000 0.00 0.00 0.00 4.00
397 398 2.039879 ACCAAAGATACACCTCCACACC 59.960 50.000 0.00 0.00 0.00 4.16
398 399 3.074412 CACCAAAGATACACCTCCACAC 58.926 50.000 0.00 0.00 0.00 3.82
399 400 2.039746 CCACCAAAGATACACCTCCACA 59.960 50.000 0.00 0.00 0.00 4.17
400 401 2.304761 TCCACCAAAGATACACCTCCAC 59.695 50.000 0.00 0.00 0.00 4.02
401 402 2.626785 TCCACCAAAGATACACCTCCA 58.373 47.619 0.00 0.00 0.00 3.86
402 403 3.456277 AGATCCACCAAAGATACACCTCC 59.544 47.826 0.00 0.00 0.00 4.30
403 404 4.698575 GAGATCCACCAAAGATACACCTC 58.301 47.826 0.00 0.00 0.00 3.85
404 405 3.133003 CGAGATCCACCAAAGATACACCT 59.867 47.826 0.00 0.00 0.00 4.00
405 406 3.458189 CGAGATCCACCAAAGATACACC 58.542 50.000 0.00 0.00 0.00 4.16
406 407 2.866762 GCGAGATCCACCAAAGATACAC 59.133 50.000 0.00 0.00 0.00 2.90
407 408 2.766263 AGCGAGATCCACCAAAGATACA 59.234 45.455 0.00 0.00 0.00 2.29
408 409 3.460857 AGCGAGATCCACCAAAGATAC 57.539 47.619 0.00 0.00 0.00 2.24
409 410 4.470602 TCTAGCGAGATCCACCAAAGATA 58.529 43.478 0.00 0.00 0.00 1.98
410 411 3.300388 TCTAGCGAGATCCACCAAAGAT 58.700 45.455 0.00 0.00 0.00 2.40
411 412 2.735151 TCTAGCGAGATCCACCAAAGA 58.265 47.619 0.00 0.00 0.00 2.52
412 413 3.742433 ATCTAGCGAGATCCACCAAAG 57.258 47.619 3.13 0.00 38.01 2.77
413 414 3.490933 CGAATCTAGCGAGATCCACCAAA 60.491 47.826 9.95 0.00 41.87 3.28
414 415 2.034685 CGAATCTAGCGAGATCCACCAA 59.965 50.000 9.95 0.00 41.87 3.67
415 416 1.609072 CGAATCTAGCGAGATCCACCA 59.391 52.381 9.95 0.00 41.87 4.17
420 421 2.034812 ACCAACCGAATCTAGCGAGATC 59.965 50.000 9.95 3.48 41.87 2.75
426 427 3.270877 ACAATCACCAACCGAATCTAGC 58.729 45.455 0.00 0.00 0.00 3.42
428 429 4.819105 AGACAATCACCAACCGAATCTA 57.181 40.909 0.00 0.00 0.00 1.98
435 436 1.535462 CACCGAAGACAATCACCAACC 59.465 52.381 0.00 0.00 0.00 3.77
437 438 1.544537 CCCACCGAAGACAATCACCAA 60.545 52.381 0.00 0.00 0.00 3.67
441 442 1.001974 CAGACCCACCGAAGACAATCA 59.998 52.381 0.00 0.00 0.00 2.57
442 443 1.002087 ACAGACCCACCGAAGACAATC 59.998 52.381 0.00 0.00 0.00 2.67
443 444 1.056660 ACAGACCCACCGAAGACAAT 58.943 50.000 0.00 0.00 0.00 2.71
456 457 2.568623 AGACCAAATCCACACAGACC 57.431 50.000 0.00 0.00 0.00 3.85
457 458 6.575162 AATAAAGACCAAATCCACACAGAC 57.425 37.500 0.00 0.00 0.00 3.51
463 464 5.673818 GCAGACGAATAAAGACCAAATCCAC 60.674 44.000 0.00 0.00 0.00 4.02
477 478 0.179113 TGCATGAGCGCAGACGAATA 60.179 50.000 11.47 0.00 46.23 1.75
488 489 2.086869 ACAACCTGTACATGCATGAGC 58.913 47.619 32.75 22.49 42.57 4.26
489 490 5.819379 AGAATACAACCTGTACATGCATGAG 59.181 40.000 32.75 18.96 35.42 2.90
512 513 6.858478 TGATGAAGAGAAGCGTATATCGAAAG 59.142 38.462 0.00 0.00 42.86 2.62
516 517 5.694816 ACTGATGAAGAGAAGCGTATATCG 58.305 41.667 0.00 0.00 43.12 2.92
539 540 4.069304 GCACACCAGAACATTAACCACTA 58.931 43.478 0.00 0.00 0.00 2.74
540 541 2.884639 GCACACCAGAACATTAACCACT 59.115 45.455 0.00 0.00 0.00 4.00
541 542 2.621055 TGCACACCAGAACATTAACCAC 59.379 45.455 0.00 0.00 0.00 4.16
542 543 2.884012 CTGCACACCAGAACATTAACCA 59.116 45.455 0.00 0.00 44.64 3.67
546 547 2.371841 AGTCCTGCACACCAGAACATTA 59.628 45.455 0.00 0.00 44.64 1.90
551 552 1.270839 GCTAAGTCCTGCACACCAGAA 60.271 52.381 0.00 0.00 44.64 3.02
559 560 1.080772 CGTCGTGCTAAGTCCTGCA 60.081 57.895 0.00 0.00 36.79 4.41
562 563 1.245732 AAGTCGTCGTGCTAAGTCCT 58.754 50.000 0.00 0.00 0.00 3.85
573 584 2.121116 AGACAGTCACAAAGTCGTCG 57.879 50.000 2.66 0.00 37.36 5.12
583 594 4.189231 ACTTTGTTGTGGTAGACAGTCAC 58.811 43.478 2.66 0.00 35.44 3.67
595 606 3.129287 AGAGCCAGACAAACTTTGTTGTG 59.871 43.478 8.56 9.12 45.52 3.33
626 637 3.186047 GTCGTCGTCATTGCCCCG 61.186 66.667 0.00 0.00 0.00 5.73
658 669 4.273148 AGGGACAACTACAAGCACTTAG 57.727 45.455 0.00 0.00 0.00 2.18
896 908 0.179134 CGGAGGAAGGTGTAGCGAAG 60.179 60.000 0.00 0.00 0.00 3.79
897 909 1.888018 CGGAGGAAGGTGTAGCGAA 59.112 57.895 0.00 0.00 0.00 4.70
898 910 2.707849 GCGGAGGAAGGTGTAGCGA 61.708 63.158 0.00 0.00 0.00 4.93
899 911 2.202756 GCGGAGGAAGGTGTAGCG 60.203 66.667 0.00 0.00 0.00 4.26
900 912 2.187163 GGCGGAGGAAGGTGTAGC 59.813 66.667 0.00 0.00 0.00 3.58
901 913 2.494918 CGGCGGAGGAAGGTGTAG 59.505 66.667 0.00 0.00 0.00 2.74
902 914 3.766691 GCGGCGGAGGAAGGTGTA 61.767 66.667 9.78 0.00 0.00 2.90
1182 1194 9.520515 GTGTAGGACCATATAATTTCCAATCAT 57.479 33.333 0.00 0.00 0.00 2.45
1206 1218 8.883731 AGTACGATCTTAATCATGGAAAAAGTG 58.116 33.333 0.00 0.00 31.76 3.16
1208 1220 9.098355 TCAGTACGATCTTAATCATGGAAAAAG 57.902 33.333 0.00 0.00 31.76 2.27
1209 1221 8.879759 GTCAGTACGATCTTAATCATGGAAAAA 58.120 33.333 0.00 0.00 31.76 1.94
1229 1241 5.845103 TCAAATTCAACTGTACGGTCAGTA 58.155 37.500 8.04 0.00 46.25 2.74
1232 1244 4.699637 ACTCAAATTCAACTGTACGGTCA 58.300 39.130 8.04 0.00 0.00 4.02
1233 1245 6.774354 TTACTCAAATTCAACTGTACGGTC 57.226 37.500 8.04 0.00 0.00 4.79
1234 1246 7.556733 TTTTACTCAAATTCAACTGTACGGT 57.443 32.000 0.04 0.04 0.00 4.83
1235 1247 8.073768 ACATTTTACTCAAATTCAACTGTACGG 58.926 33.333 0.00 0.00 32.24 4.02
1236 1248 8.891928 CACATTTTACTCAAATTCAACTGTACG 58.108 33.333 0.00 0.00 32.24 3.67
1245 1258 5.634859 CAGGTGGCACATTTTACTCAAATTC 59.365 40.000 20.82 0.00 44.52 2.17
1247 1260 4.832266 TCAGGTGGCACATTTTACTCAAAT 59.168 37.500 20.82 0.00 44.52 2.32
1252 1265 3.056607 GCATTCAGGTGGCACATTTTACT 60.057 43.478 20.82 2.74 44.52 2.24
1284 1297 2.329379 AGACGTTCAAATCTGACTCGC 58.671 47.619 0.00 0.00 34.50 5.03
1289 1302 5.758296 AGTTTAGCAAGACGTTCAAATCTGA 59.242 36.000 0.00 0.00 0.00 3.27
1357 1384 9.705290 ACAAGCCTTAATAAAATTAACCAACAG 57.295 29.630 0.00 0.00 0.00 3.16
1473 1500 4.671250 GCTTTGCAGTACTTCTTCATGCTC 60.671 45.833 0.00 0.00 37.76 4.26
1475 1502 3.496155 GCTTTGCAGTACTTCTTCATGC 58.504 45.455 0.00 0.00 37.40 4.06
1498 1525 2.944094 GCCGGATTGTCCCACAAGTTAT 60.944 50.000 5.05 0.00 41.94 1.89
1550 1577 0.745486 CAACCGCTCTGATGGCATCA 60.745 55.000 27.24 27.24 37.76 3.07
1605 1632 8.641541 TCACTGAACTCACATTATGCATCTATA 58.358 33.333 0.19 0.00 0.00 1.31
1606 1633 7.503549 TCACTGAACTCACATTATGCATCTAT 58.496 34.615 0.19 0.00 0.00 1.98
1698 1728 7.745717 TCCTTGTGCCTTTATATAGCATAACT 58.254 34.615 0.00 0.00 39.04 2.24
1702 1732 6.782986 TGATCCTTGTGCCTTTATATAGCAT 58.217 36.000 0.00 0.00 39.04 3.79
1777 1815 6.660521 ACTGATTCATAATTTCTGAAGTGGCA 59.339 34.615 8.53 0.00 36.16 4.92
1799 1839 2.310538 AGCAAAAAGGGAAGGACACTG 58.689 47.619 0.00 0.00 29.82 3.66
1822 1864 3.557577 TCATTTCCGCAGTTCACAATG 57.442 42.857 0.00 0.00 0.00 2.82
1834 1876 6.483307 TGCTAAACTCTAATCCATCATTTCCG 59.517 38.462 0.00 0.00 0.00 4.30
1886 1928 2.286872 CCTCTTCAGCCTGCACATTAG 58.713 52.381 0.00 0.00 0.00 1.73
1912 1954 4.128925 TGCCTGCTAGTTGACTTATCAG 57.871 45.455 0.00 0.00 35.83 2.90
2110 2152 5.866335 ATTTAACTTAACCAATGTCGCGA 57.134 34.783 3.71 3.71 0.00 5.87
2111 2153 7.403421 TCATATTTAACTTAACCAATGTCGCG 58.597 34.615 0.00 0.00 0.00 5.87
2150 2193 5.446143 TTGGTGTTGCCTAATTGTAACAG 57.554 39.130 0.63 0.00 38.35 3.16
2174 2217 5.069251 AGAGTGGTATTATGGTCAGTGCTAC 59.931 44.000 0.00 0.00 0.00 3.58
2184 2227 9.429359 GAATCATGAAGTAGAGTGGTATTATGG 57.571 37.037 0.00 0.00 0.00 2.74
2269 2312 8.115490 ACAAATATTAGCAATAGCCATCCTTC 57.885 34.615 0.00 0.00 43.56 3.46
2293 2373 5.948992 AACTGCTGACTAAGATTTGGAAC 57.051 39.130 0.00 0.00 0.00 3.62
2309 2389 4.582869 TCATTGAAGTGCTGATAACTGCT 58.417 39.130 3.64 0.00 40.71 4.24
2310 2390 4.952262 TCATTGAAGTGCTGATAACTGC 57.048 40.909 0.00 0.00 40.53 4.40
2311 2391 9.486497 ACTATATCATTGAAGTGCTGATAACTG 57.514 33.333 0.00 0.00 35.96 3.16
2368 2448 3.394606 TGGGGATAATCAAAGGACTAGGC 59.605 47.826 0.00 0.00 0.00 3.93
2370 2450 4.202472 GGGTGGGGATAATCAAAGGACTAG 60.202 50.000 0.00 0.00 0.00 2.57
2383 2463 4.965283 AGATTTCAAAAGGGTGGGGATA 57.035 40.909 0.00 0.00 0.00 2.59
2532 2622 7.571919 ACATGTACTCTGATTCAATCTCCATT 58.428 34.615 0.00 0.00 0.00 3.16
2607 2697 2.664916 CCAGTGCCAGAATTTTCAACG 58.335 47.619 0.00 0.00 0.00 4.10
2827 2917 3.305471 GGGAGCGTGACATACTTCTATCC 60.305 52.174 0.00 0.00 0.00 2.59
2981 3071 0.950836 TTCACAGAATGCGTGGGTTG 59.049 50.000 0.00 0.00 42.53 3.77
3059 3154 7.524717 TCTCCAGAAAACTAAATGAAAAGGG 57.475 36.000 0.00 0.00 0.00 3.95
3139 3234 2.887783 TGCAAAACGGCATAAGGAGAAA 59.112 40.909 0.00 0.00 39.25 2.52
3152 3247 1.608590 ACACCCTTCTGATGCAAAACG 59.391 47.619 0.00 0.00 0.00 3.60
3153 3248 3.733443 AACACCCTTCTGATGCAAAAC 57.267 42.857 0.00 0.00 0.00 2.43
3169 3264 6.039382 ACAGGGAAAAGATCACAGTAAAACAC 59.961 38.462 0.00 0.00 27.88 3.32
3170 3265 6.039270 CACAGGGAAAAGATCACAGTAAAACA 59.961 38.462 0.00 0.00 28.78 2.83
3171 3266 6.262273 TCACAGGGAAAAGATCACAGTAAAAC 59.738 38.462 0.00 0.00 28.78 2.43
3178 3273 3.084039 GCATCACAGGGAAAAGATCACA 58.916 45.455 0.00 0.00 32.04 3.58
3179 3274 3.350833 AGCATCACAGGGAAAAGATCAC 58.649 45.455 0.00 0.00 0.00 3.06
3191 3286 6.519382 TCCATTCTAGTATCAAGCATCACAG 58.481 40.000 0.00 0.00 0.00 3.66
3239 3334 6.682113 GCCATTCTGATGTGAAGCATTGTTAT 60.682 38.462 0.00 0.00 38.06 1.89
3253 3348 9.202273 GTAGATTTAGAGTTAGCCATTCTGATG 57.798 37.037 0.00 0.00 0.00 3.07
3275 3370 0.036388 CGCCTGGAAGCTTTGGTAGA 60.036 55.000 0.00 0.00 0.00 2.59
3339 3434 8.087750 TCATTGTCATCCAAGTGAAAATTAACC 58.912 33.333 0.00 0.00 34.56 2.85
3381 3476 8.508875 TCTCGATTTTTAAATTCACTGGGTAAC 58.491 33.333 0.00 0.00 0.00 2.50
3382 3477 8.508875 GTCTCGATTTTTAAATTCACTGGGTAA 58.491 33.333 0.00 0.00 0.00 2.85
3395 3490 6.428771 ACCATTTCTTCGGTCTCGATTTTTAA 59.571 34.615 0.00 0.00 45.51 1.52
3397 3492 4.760204 ACCATTTCTTCGGTCTCGATTTTT 59.240 37.500 0.00 0.00 45.51 1.94
3408 3503 0.523072 CAGTGGCACCATTTCTTCGG 59.477 55.000 15.27 0.00 0.00 4.30
3438 3533 1.664151 GTAACTCCGCTTGGTATGTGC 59.336 52.381 0.00 0.00 0.00 4.57
3450 3545 0.389948 AGCTTTCGGCAGTAACTCCG 60.390 55.000 2.88 2.88 46.52 4.63
3483 3578 6.348132 CCACTTGCGTGAACATTCTACATTTA 60.348 38.462 0.00 0.00 43.97 1.40
3617 3712 8.474025 ACTCTTAGTTCTCTTGTTATGATGAGG 58.526 37.037 0.00 0.00 0.00 3.86
3648 3743 3.056107 TGTTTCTCGATCATCTTCGGGTT 60.056 43.478 0.00 0.00 40.51 4.11
3674 3769 1.881925 CGGTTGCATCTTTCCTCCACA 60.882 52.381 0.00 0.00 0.00 4.17
3684 3779 2.507102 CGTCTCGCGGTTGCATCT 60.507 61.111 6.13 0.00 42.97 2.90
3712 3807 2.493273 GAATTCCTGGGGCCCGAACA 62.493 60.000 19.83 7.46 0.00 3.18
3731 3826 2.201732 CCCGTGTTAAGATCATGGACG 58.798 52.381 4.72 0.00 42.63 4.79
3896 4395 6.540438 ACAGAAGTTATTCTCCGGTAATGA 57.460 37.500 0.00 0.00 44.15 2.57
3904 4403 6.415573 ACCCATGTTACAGAAGTTATTCTCC 58.584 40.000 0.00 0.00 44.15 3.71
3908 4407 6.539173 TGTGACCCATGTTACAGAAGTTATT 58.461 36.000 0.00 0.00 36.20 1.40
3914 4413 5.380900 TGAAATGTGACCCATGTTACAGAA 58.619 37.500 0.00 0.00 43.27 3.02
3949 4448 9.839185 AGCTCTTTCCTATACCTGGTATATTTA 57.161 33.333 23.21 11.41 31.68 1.40
3973 4472 2.839754 AGTCGGAGGCTTGGAGTAAGC 61.840 57.143 3.16 3.16 45.33 3.09
3974 4473 1.135333 GAGTCGGAGGCTTGGAGTAAG 59.865 57.143 0.00 0.00 45.33 2.34
3975 4474 1.183549 GAGTCGGAGGCTTGGAGTAA 58.816 55.000 0.00 0.00 45.33 2.24
3977 4476 0.616111 ATGAGTCGGAGGCTTGGAGT 60.616 55.000 0.00 0.00 45.33 3.85
3981 4480 1.364626 GCACATGAGTCGGAGGCTTG 61.365 60.000 0.00 0.00 45.33 4.01
3982 4481 1.078848 GCACATGAGTCGGAGGCTT 60.079 57.895 0.00 0.00 45.33 4.35
3984 4483 2.512515 GGCACATGAGTCGGAGGC 60.513 66.667 0.00 0.00 0.00 4.70
3986 4485 2.202797 CCGGCACATGAGTCGGAG 60.203 66.667 29.12 4.66 44.69 4.63
4078 4597 3.368571 GCTGCAGGACAAGCACCC 61.369 66.667 17.12 0.00 37.02 4.61
4569 5088 2.780094 CGGTGGCTCTCTCATCGCT 61.780 63.158 0.00 0.00 31.88 4.93
4575 5094 0.968393 AGTTCCTCGGTGGCTCTCTC 60.968 60.000 0.00 0.00 35.26 3.20
4578 5097 3.701454 GAGTTCCTCGGTGGCTCT 58.299 61.111 0.00 0.00 35.26 4.09
4631 5150 1.805945 CGCGCAGACAACCTCTACC 60.806 63.158 8.75 0.00 0.00 3.18
4725 5244 1.676967 CTTGCTTCCAGCCCAGTCC 60.677 63.158 0.00 0.00 41.51 3.85
4733 5252 0.739112 GGAGCTCGTCTTGCTTCCAG 60.739 60.000 7.83 0.00 41.30 3.86
4734 5253 1.293498 GGAGCTCGTCTTGCTTCCA 59.707 57.895 7.83 0.00 41.30 3.53
4799 5318 2.594119 CTACGGCAGGTTCGTCTCCG 62.594 65.000 0.00 0.00 45.04 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.