Multiple sequence alignment - TraesCS1A01G232900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G232900 chr1A 100.000 3040 0 0 1 3040 406188790 406191829 0.000000e+00 5614.0
1 TraesCS1A01G232900 chr1A 97.872 423 9 0 2618 3040 406202034 406202456 0.000000e+00 732.0
2 TraesCS1A01G232900 chr1A 97.619 420 9 1 2622 3040 411413568 411413987 0.000000e+00 719.0
3 TraesCS1A01G232900 chr1A 97.163 423 12 0 2618 3040 411404268 411404690 0.000000e+00 715.0
4 TraesCS1A01G232900 chr1A 100.000 115 0 0 1 115 401729882 401729996 2.370000e-51 213.0
5 TraesCS1A01G232900 chr1D 95.534 2508 63 9 115 2619 322284574 322287035 0.000000e+00 3965.0
6 TraesCS1A01G232900 chr1D 96.750 1446 38 6 115 1558 227131473 227130035 0.000000e+00 2401.0
7 TraesCS1A01G232900 chr1D 95.851 964 33 3 1656 2619 227129637 227128681 0.000000e+00 1552.0
8 TraesCS1A01G232900 chr1D 81.707 164 25 3 284 443 112443752 112443590 6.840000e-27 132.0
9 TraesCS1A01G232900 chr1D 84.762 105 10 3 518 622 112443562 112443464 1.930000e-17 100.0
10 TraesCS1A01G232900 chr1D 94.340 53 2 1 1576 1628 227130041 227129990 2.510000e-11 80.5
11 TraesCS1A01G232900 chr1B 95.337 2509 77 13 115 2619 327025184 327022712 0.000000e+00 3949.0
12 TraesCS1A01G232900 chr1B 96.414 1506 40 5 115 1617 435193537 435195031 0.000000e+00 2470.0
13 TraesCS1A01G232900 chr1B 96.497 942 30 3 1678 2619 435195411 435196349 0.000000e+00 1554.0
14 TraesCS1A01G232900 chr3A 84.060 1399 156 34 692 2063 739735331 739733973 0.000000e+00 1286.0
15 TraesCS1A01G232900 chr3A 84.118 913 100 17 668 1572 739322282 739323157 0.000000e+00 841.0
16 TraesCS1A01G232900 chr3A 82.721 463 61 17 1585 2032 739323225 739323683 7.900000e-106 394.0
17 TraesCS1A01G232900 chr3A 86.567 134 7 6 506 637 739770403 739770279 1.470000e-28 137.0
18 TraesCS1A01G232900 chr3B 83.138 1447 166 41 652 2060 816692414 816691008 0.000000e+00 1249.0
19 TraesCS1A01G232900 chr3B 95.981 423 14 3 2618 3039 781954651 781954231 0.000000e+00 684.0
20 TraesCS1A01G232900 chr3D 83.784 1369 158 34 720 2062 607310709 607309379 0.000000e+00 1240.0
21 TraesCS1A01G232900 chr3D 82.578 1435 172 34 655 2063 606929722 606931104 0.000000e+00 1194.0
22 TraesCS1A01G232900 chr3D 81.534 352 53 12 273 614 606929372 606929721 2.310000e-71 279.0
23 TraesCS1A01G232900 chr3D 99.138 116 1 0 1 116 330278590 330278475 3.070000e-50 209.0
24 TraesCS1A01G232900 chr4A 97.163 423 11 1 2618 3040 70215772 70216193 0.000000e+00 713.0
25 TraesCS1A01G232900 chr4A 96.000 425 16 1 2616 3040 70211079 70211502 0.000000e+00 689.0
26 TraesCS1A01G232900 chr4A 95.991 424 14 3 2618 3040 221248262 221247841 0.000000e+00 686.0
27 TraesCS1A01G232900 chr5A 96.445 422 14 1 2618 3039 397419939 397419519 0.000000e+00 695.0
28 TraesCS1A01G232900 chr2A 96.000 425 15 2 2615 3039 189926776 189927198 0.000000e+00 689.0
29 TraesCS1A01G232900 chr2A 98.305 118 2 0 1 118 424568574 424568691 1.100000e-49 207.0
30 TraesCS1A01G232900 chr6D 100.000 115 0 0 1 115 94622596 94622482 2.370000e-51 213.0
31 TraesCS1A01G232900 chr2B 100.000 115 0 0 1 115 679206253 679206139 2.370000e-51 213.0
32 TraesCS1A01G232900 chr7B 99.138 116 1 0 1 116 253646196 253646081 3.070000e-50 209.0
33 TraesCS1A01G232900 chrUn 99.130 115 1 0 1 115 1035833 1035719 1.100000e-49 207.0
34 TraesCS1A01G232900 chrUn 99.130 115 1 0 1 115 17582239 17582125 1.100000e-49 207.0
35 TraesCS1A01G232900 chrUn 99.130 115 1 0 1 115 70285979 70285865 1.100000e-49 207.0
36 TraesCS1A01G232900 chrUn 85.849 106 7 6 518 622 101646648 101646550 4.150000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G232900 chr1A 406188790 406191829 3039 False 5614.0 5614 100.0000 1 3040 1 chr1A.!!$F2 3039
1 TraesCS1A01G232900 chr1D 322284574 322287035 2461 False 3965.0 3965 95.5340 115 2619 1 chr1D.!!$F1 2504
2 TraesCS1A01G232900 chr1D 227128681 227131473 2792 True 1344.5 2401 95.6470 115 2619 3 chr1D.!!$R2 2504
3 TraesCS1A01G232900 chr1B 327022712 327025184 2472 True 3949.0 3949 95.3370 115 2619 1 chr1B.!!$R1 2504
4 TraesCS1A01G232900 chr1B 435193537 435196349 2812 False 2012.0 2470 96.4555 115 2619 2 chr1B.!!$F1 2504
5 TraesCS1A01G232900 chr3A 739733973 739735331 1358 True 1286.0 1286 84.0600 692 2063 1 chr3A.!!$R1 1371
6 TraesCS1A01G232900 chr3A 739322282 739323683 1401 False 617.5 841 83.4195 668 2032 2 chr3A.!!$F1 1364
7 TraesCS1A01G232900 chr3B 816691008 816692414 1406 True 1249.0 1249 83.1380 652 2060 1 chr3B.!!$R2 1408
8 TraesCS1A01G232900 chr3D 607309379 607310709 1330 True 1240.0 1240 83.7840 720 2062 1 chr3D.!!$R2 1342
9 TraesCS1A01G232900 chr3D 606929372 606931104 1732 False 736.5 1194 82.0560 273 2063 2 chr3D.!!$F1 1790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.0 0.0 0.0 40.48 4.09 F
60 61 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.0 0.0 0.0 38.69 3.01 F
61 62 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.0 0.0 0.0 38.69 3.16 F
1924 2474 0.527817 GGACATGGAGCTTACGGACG 60.528 60.0 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2457 0.172803 GTCGTCCGTAAGCTCCATGT 59.827 55.000 0.00 0.0 0.0 3.21 R
1924 2474 2.467880 TCCCAGGAGTTGTCATAGGTC 58.532 52.381 0.00 0.0 0.0 3.85 R
1999 2567 2.693871 GGGTCCCATGGTCCAGCAT 61.694 63.158 20.21 0.0 32.6 3.79 R
2822 3398 0.034059 AGAAACACTCCCACGCTCAG 59.966 55.000 0.00 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.182887 AGAGATAGCTATGGACAGGGG 57.817 52.381 11.94 0.00 0.00 4.79
21 22 2.452823 AGAGATAGCTATGGACAGGGGT 59.547 50.000 11.94 0.00 0.00 4.95
22 23 2.564947 GAGATAGCTATGGACAGGGGTG 59.435 54.545 11.94 0.00 0.00 4.61
23 24 1.002544 GATAGCTATGGACAGGGGTGC 59.997 57.143 11.94 0.00 35.66 5.01
24 25 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
25 26 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
26 27 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
27 28 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
29 30 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
30 31 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
31 32 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
32 33 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
33 34 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
34 35 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
35 36 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
36 37 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
37 38 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
38 39 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
39 40 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
40 41 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
41 42 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
42 43 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
43 44 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
44 45 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
45 46 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
46 47 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
47 48 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
48 49 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
49 50 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
50 51 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
51 52 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
52 53 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
53 54 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
54 55 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
55 56 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
56 57 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
57 58 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
58 59 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
59 60 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
60 61 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
61 62 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
70 71 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
71 72 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
72 73 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
73 74 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
74 75 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
75 76 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
76 77 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
77 78 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
78 79 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
79 80 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
80 81 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
81 82 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
82 83 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
83 84 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
84 85 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
85 86 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
86 87 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
87 88 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
88 89 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
89 90 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
90 91 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
91 92 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
92 93 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
93 94 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
94 95 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
95 96 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
96 97 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
97 98 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
98 99 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
99 100 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
100 101 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
101 102 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
102 103 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
103 104 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
104 105 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
105 106 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
106 107 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
107 108 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
108 109 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
109 110 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
213 215 7.657336 TGTATCTGATTCGCATATGACTGTTA 58.343 34.615 6.97 0.00 0.00 2.41
214 216 8.141268 TGTATCTGATTCGCATATGACTGTTAA 58.859 33.333 6.97 0.00 0.00 2.01
215 217 9.144747 GTATCTGATTCGCATATGACTGTTAAT 57.855 33.333 6.97 0.00 0.00 1.40
216 218 7.412137 TCTGATTCGCATATGACTGTTAATG 57.588 36.000 6.97 0.00 0.00 1.90
217 219 5.989249 TGATTCGCATATGACTGTTAATGC 58.011 37.500 6.97 10.91 41.00 3.56
218 220 5.526846 TGATTCGCATATGACTGTTAATGCA 59.473 36.000 6.97 0.00 43.86 3.96
219 221 6.205270 TGATTCGCATATGACTGTTAATGCAT 59.795 34.615 6.97 0.00 43.86 3.96
220 222 5.347012 TCGCATATGACTGTTAATGCATG 57.653 39.130 6.97 0.00 43.86 4.06
221 223 4.815846 TCGCATATGACTGTTAATGCATGT 59.184 37.500 6.97 0.00 43.86 3.21
222 224 5.988561 TCGCATATGACTGTTAATGCATGTA 59.011 36.000 6.97 0.00 43.86 2.29
223 225 6.650390 TCGCATATGACTGTTAATGCATGTAT 59.350 34.615 6.97 0.00 43.86 2.29
224 226 7.816995 TCGCATATGACTGTTAATGCATGTATA 59.183 33.333 6.97 0.00 43.86 1.47
225 227 8.606602 CGCATATGACTGTTAATGCATGTATAT 58.393 33.333 6.97 0.00 43.86 0.86
322 338 7.325338 CACAACTGAAATTCTGTTATGCTGAAG 59.675 37.037 15.99 6.08 36.59 3.02
426 453 8.665685 GGGACATTGTAGACTTTACATTAGTTG 58.334 37.037 0.00 0.00 0.00 3.16
458 486 3.009473 AGAAGCCTGAATTCTGTAAGCCA 59.991 43.478 7.05 0.00 35.70 4.75
665 700 6.316390 GCAAAGGCTAACTGTCTTGTACATAT 59.684 38.462 0.00 0.00 40.13 1.78
784 824 7.148171 TGTGTGTGTCAGTTGTTTCATTTATGA 60.148 33.333 0.00 0.00 34.44 2.15
959 1015 7.548196 TTTCTGACACGTGAGTTTCTTATTT 57.452 32.000 25.01 0.00 46.40 1.40
1044 1100 1.269102 CGCCAGTACTATGAGGAACCG 60.269 57.143 0.00 0.00 0.00 4.44
1064 1123 1.571919 CGAGGATTTCGTGATGGTCC 58.428 55.000 0.00 0.00 44.27 4.46
1065 1124 1.137086 CGAGGATTTCGTGATGGTCCT 59.863 52.381 0.00 0.00 44.27 3.85
1066 1125 2.827652 GAGGATTTCGTGATGGTCCTC 58.172 52.381 4.18 4.18 45.64 3.71
1082 1144 1.536073 CCTCCTCCTCGACTTGCACA 61.536 60.000 0.00 0.00 0.00 4.57
1468 1530 2.636830 ACTCTGAAAAGCAGCGCATAT 58.363 42.857 11.47 0.00 44.52 1.78
1486 1548 4.586884 CATATCTGCCATGGTAGCTGAAT 58.413 43.478 23.91 14.65 40.85 2.57
1514 1576 3.585862 GTCTGCGACAGGAACTAATTCA 58.414 45.455 6.95 0.00 36.02 2.57
1518 1580 4.109766 TGCGACAGGAACTAATTCATACG 58.890 43.478 0.00 0.00 36.02 3.06
1564 1630 4.332819 GCGTTTCTGGTTTAGTAGATGCAT 59.667 41.667 0.00 0.00 0.00 3.96
1875 2421 3.816523 TCGAAATCTGTTGTGGTTAACCC 59.183 43.478 21.97 13.34 34.29 4.11
1907 2457 9.841295 ATACTTATAATTTTAGGTTTCAGCGGA 57.159 29.630 0.00 0.00 0.00 5.54
1924 2474 0.527817 GGACATGGAGCTTACGGACG 60.528 60.000 0.00 0.00 0.00 4.79
1999 2567 3.999001 TCTTACAGAGAGAAACGCTACGA 59.001 43.478 0.00 0.00 0.00 3.43
2134 2702 2.498644 TGTGGTGACTGGTGTTTTCA 57.501 45.000 0.00 0.00 0.00 2.69
2175 2743 2.063156 TAGCTTTGTTGGCAAATGCG 57.937 45.000 0.00 0.00 42.88 4.73
2242 2810 2.883574 TCATAACCGTTGTAGAAGGCG 58.116 47.619 0.00 0.00 0.00 5.52
2300 2868 3.507622 ACTCTAGAAAATTGCAACAGGGC 59.492 43.478 0.00 0.00 0.00 5.19
2444 3012 4.851639 AAATGAGGACTGATGCCTAGTT 57.148 40.909 0.00 0.00 35.44 2.24
2502 3070 5.539955 AGGTGGTGAAAAGAATAACAGCAAT 59.460 36.000 0.00 0.00 41.19 3.56
2536 3104 7.812669 GTCATGTCCCGTCTTATTTTTGAATTT 59.187 33.333 0.00 0.00 0.00 1.82
2537 3105 8.364142 TCATGTCCCGTCTTATTTTTGAATTTT 58.636 29.630 0.00 0.00 0.00 1.82
2538 3106 8.987890 CATGTCCCGTCTTATTTTTGAATTTTT 58.012 29.630 0.00 0.00 0.00 1.94
2589 3165 7.329499 CCATCCCAATTTACATGTCATTTTCA 58.671 34.615 0.00 0.00 0.00 2.69
2621 3197 8.759641 TGTGATTTTTAATTGACCATTTTGTCG 58.240 29.630 0.00 0.00 38.11 4.35
2622 3198 8.220434 GTGATTTTTAATTGACCATTTTGTCGG 58.780 33.333 0.00 0.00 38.11 4.79
2623 3199 7.386299 TGATTTTTAATTGACCATTTTGTCGGG 59.614 33.333 0.00 0.00 38.11 5.14
2624 3200 4.792521 TTAATTGACCATTTTGTCGGGG 57.207 40.909 0.00 0.00 38.11 5.73
2625 3201 2.595750 ATTGACCATTTTGTCGGGGA 57.404 45.000 0.00 0.00 38.11 4.81
2626 3202 2.366640 TTGACCATTTTGTCGGGGAA 57.633 45.000 0.00 0.00 38.11 3.97
2627 3203 1.904287 TGACCATTTTGTCGGGGAAG 58.096 50.000 0.00 0.00 38.11 3.46
2628 3204 1.173913 GACCATTTTGTCGGGGAAGG 58.826 55.000 0.00 0.00 0.00 3.46
2629 3205 0.898326 ACCATTTTGTCGGGGAAGGC 60.898 55.000 0.00 0.00 0.00 4.35
2630 3206 0.611896 CCATTTTGTCGGGGAAGGCT 60.612 55.000 0.00 0.00 0.00 4.58
2631 3207 0.527565 CATTTTGTCGGGGAAGGCTG 59.472 55.000 0.00 0.00 0.00 4.85
2632 3208 0.404040 ATTTTGTCGGGGAAGGCTGA 59.596 50.000 0.00 0.00 0.00 4.26
2633 3209 0.404040 TTTTGTCGGGGAAGGCTGAT 59.596 50.000 0.00 0.00 0.00 2.90
2634 3210 0.035439 TTTGTCGGGGAAGGCTGATC 60.035 55.000 0.00 0.00 0.00 2.92
2635 3211 1.910580 TTGTCGGGGAAGGCTGATCC 61.911 60.000 0.00 0.00 36.16 3.36
2636 3212 2.040442 TCGGGGAAGGCTGATCCA 59.960 61.111 7.51 0.00 38.80 3.41
2637 3213 2.190578 CGGGGAAGGCTGATCCAC 59.809 66.667 7.51 2.49 38.80 4.02
2638 3214 2.597903 GGGGAAGGCTGATCCACC 59.402 66.667 7.51 2.94 38.80 4.61
2639 3215 2.308722 GGGGAAGGCTGATCCACCA 61.309 63.158 7.51 0.00 38.80 4.17
2640 3216 1.691219 GGGAAGGCTGATCCACCAA 59.309 57.895 7.51 0.00 38.80 3.67
2641 3217 0.681243 GGGAAGGCTGATCCACCAAC 60.681 60.000 7.51 0.00 38.80 3.77
2642 3218 0.038166 GGAAGGCTGATCCACCAACA 59.962 55.000 0.19 0.00 36.92 3.33
2643 3219 1.168714 GAAGGCTGATCCACCAACAC 58.831 55.000 4.11 0.00 37.29 3.32
2644 3220 0.251341 AAGGCTGATCCACCAACACC 60.251 55.000 4.11 0.00 37.29 4.16
2645 3221 1.136329 AGGCTGATCCACCAACACCT 61.136 55.000 4.11 0.00 37.29 4.00
2646 3222 0.618458 GGCTGATCCACCAACACCTA 59.382 55.000 0.00 0.00 34.01 3.08
2647 3223 1.212935 GGCTGATCCACCAACACCTAT 59.787 52.381 0.00 0.00 34.01 2.57
2648 3224 2.292267 GCTGATCCACCAACACCTATG 58.708 52.381 0.00 0.00 0.00 2.23
2649 3225 2.923121 CTGATCCACCAACACCTATGG 58.077 52.381 0.00 0.00 43.84 2.74
2650 3226 1.563879 TGATCCACCAACACCTATGGG 59.436 52.381 0.00 0.00 42.48 4.00
2651 3227 0.926293 ATCCACCAACACCTATGGGG 59.074 55.000 0.00 0.00 42.48 4.96
2652 3228 0.178858 TCCACCAACACCTATGGGGA 60.179 55.000 0.00 0.00 44.53 4.81
2653 3229 0.034477 CCACCAACACCTATGGGGAC 60.034 60.000 0.00 0.00 44.53 4.46
2654 3230 0.695924 CACCAACACCTATGGGGACA 59.304 55.000 0.00 0.00 44.53 4.02
2655 3231 1.340017 CACCAACACCTATGGGGACAG 60.340 57.143 0.00 0.00 44.53 3.51
2656 3232 4.594558 CACCAACACCTATGGGGACAGG 62.595 59.091 0.00 0.00 44.53 4.00
2666 3242 3.600981 GGGACAGGGCCCCCTTTT 61.601 66.667 21.43 0.00 45.70 2.27
2667 3243 2.283894 GGACAGGGCCCCCTTTTG 60.284 66.667 21.43 12.95 45.70 2.44
2668 3244 2.283894 GACAGGGCCCCCTTTTGG 60.284 66.667 21.43 1.68 45.70 3.28
2669 3245 3.116950 ACAGGGCCCCCTTTTGGT 61.117 61.111 21.43 2.39 45.70 3.67
2670 3246 2.204034 CAGGGCCCCCTTTTGGTT 59.796 61.111 21.43 0.00 45.70 3.67
2671 3247 1.913262 CAGGGCCCCCTTTTGGTTC 60.913 63.158 21.43 0.00 45.70 3.62
2672 3248 2.994995 GGGCCCCCTTTTGGTTCG 60.995 66.667 12.23 0.00 38.10 3.95
2673 3249 2.994995 GGCCCCCTTTTGGTTCGG 60.995 66.667 0.00 0.00 38.10 4.30
2674 3250 2.116556 GCCCCCTTTTGGTTCGGA 59.883 61.111 0.00 0.00 38.10 4.55
2675 3251 1.977009 GCCCCCTTTTGGTTCGGAG 60.977 63.158 0.00 0.00 38.10 4.63
2676 3252 1.304134 CCCCCTTTTGGTTCGGAGG 60.304 63.158 0.00 0.00 38.10 4.30
2677 3253 1.304134 CCCCTTTTGGTTCGGAGGG 60.304 63.158 0.19 0.19 46.89 4.30
2678 3254 1.304134 CCCTTTTGGTTCGGAGGGG 60.304 63.158 0.00 0.00 44.21 4.79
2679 3255 1.304134 CCTTTTGGTTCGGAGGGGG 60.304 63.158 0.00 0.00 34.07 5.40
2698 3274 3.862124 CGGAGGTCGCACAAAGAG 58.138 61.111 0.00 0.00 0.00 2.85
2699 3275 2.383527 CGGAGGTCGCACAAAGAGC 61.384 63.158 0.00 0.00 36.46 4.09
2706 3282 4.185413 GCACAAAGAGCGGATCGA 57.815 55.556 0.00 0.00 0.00 3.59
2707 3283 2.002127 GCACAAAGAGCGGATCGAG 58.998 57.895 0.00 0.00 0.00 4.04
2708 3284 1.424493 GCACAAAGAGCGGATCGAGG 61.424 60.000 0.00 0.00 0.00 4.63
2709 3285 1.153549 ACAAAGAGCGGATCGAGGC 60.154 57.895 0.00 0.00 0.00 4.70
2710 3286 2.105128 AAAGAGCGGATCGAGGCG 59.895 61.111 0.00 0.00 0.00 5.52
2711 3287 3.432051 AAAGAGCGGATCGAGGCGG 62.432 63.158 0.00 0.00 0.00 6.13
2713 3289 3.285215 GAGCGGATCGAGGCGGTA 61.285 66.667 0.00 0.00 0.00 4.02
2714 3290 3.539560 GAGCGGATCGAGGCGGTAC 62.540 68.421 0.00 0.00 0.00 3.34
2715 3291 3.896133 GCGGATCGAGGCGGTACA 61.896 66.667 0.00 0.00 0.00 2.90
2716 3292 3.039988 CGGATCGAGGCGGTACAT 58.960 61.111 0.00 0.00 0.00 2.29
2717 3293 1.371758 CGGATCGAGGCGGTACATG 60.372 63.158 0.00 0.00 0.00 3.21
2718 3294 1.664965 GGATCGAGGCGGTACATGC 60.665 63.158 0.00 0.00 0.00 4.06
2719 3295 2.016704 GATCGAGGCGGTACATGCG 61.017 63.158 0.00 0.00 0.00 4.73
2720 3296 2.402282 GATCGAGGCGGTACATGCGA 62.402 60.000 0.00 0.00 0.00 5.10
2721 3297 2.407846 ATCGAGGCGGTACATGCGAG 62.408 60.000 0.00 0.00 0.00 5.03
2722 3298 2.962253 GAGGCGGTACATGCGAGC 60.962 66.667 0.00 0.00 0.00 5.03
2723 3299 3.716539 GAGGCGGTACATGCGAGCA 62.717 63.158 0.00 0.00 0.00 4.26
2724 3300 3.264897 GGCGGTACATGCGAGCAG 61.265 66.667 3.58 0.00 0.00 4.24
2725 3301 2.509336 GCGGTACATGCGAGCAGT 60.509 61.111 3.58 4.89 0.00 4.40
2726 3302 2.100631 GCGGTACATGCGAGCAGTT 61.101 57.895 3.58 0.00 0.00 3.16
2727 3303 1.635663 GCGGTACATGCGAGCAGTTT 61.636 55.000 3.58 0.00 0.00 2.66
2728 3304 0.796312 CGGTACATGCGAGCAGTTTT 59.204 50.000 3.58 0.00 0.00 2.43
2729 3305 1.196808 CGGTACATGCGAGCAGTTTTT 59.803 47.619 3.58 0.00 0.00 1.94
2730 3306 2.413796 CGGTACATGCGAGCAGTTTTTA 59.586 45.455 3.58 0.00 0.00 1.52
2731 3307 3.723835 CGGTACATGCGAGCAGTTTTTAC 60.724 47.826 3.58 0.87 0.00 2.01
2732 3308 2.989422 ACATGCGAGCAGTTTTTACC 57.011 45.000 3.58 0.00 0.00 2.85
2733 3309 1.539827 ACATGCGAGCAGTTTTTACCC 59.460 47.619 3.58 0.00 0.00 3.69
2734 3310 1.539388 CATGCGAGCAGTTTTTACCCA 59.461 47.619 3.58 0.00 0.00 4.51
2735 3311 1.234821 TGCGAGCAGTTTTTACCCAG 58.765 50.000 0.00 0.00 0.00 4.45
2736 3312 0.109735 GCGAGCAGTTTTTACCCAGC 60.110 55.000 0.00 0.00 0.00 4.85
2737 3313 1.523758 CGAGCAGTTTTTACCCAGCT 58.476 50.000 0.00 0.00 34.61 4.24
2738 3314 1.880027 CGAGCAGTTTTTACCCAGCTT 59.120 47.619 0.00 0.00 31.61 3.74
2739 3315 2.095718 CGAGCAGTTTTTACCCAGCTTC 60.096 50.000 0.00 0.00 31.61 3.86
2740 3316 1.880027 AGCAGTTTTTACCCAGCTTCG 59.120 47.619 0.00 0.00 0.00 3.79
2741 3317 1.068541 GCAGTTTTTACCCAGCTTCGG 60.069 52.381 0.00 0.00 0.00 4.30
2762 3338 4.757554 GCACGGATGCGTAAAACC 57.242 55.556 13.29 0.00 43.33 3.27
2763 3339 1.135939 GCACGGATGCGTAAAACCC 59.864 57.895 13.29 0.00 43.33 4.11
2764 3340 1.303091 GCACGGATGCGTAAAACCCT 61.303 55.000 13.29 0.00 43.33 4.34
2765 3341 2.008045 GCACGGATGCGTAAAACCCTA 61.008 52.381 13.29 0.00 43.33 3.53
2766 3342 1.662122 CACGGATGCGTAAAACCCTAC 59.338 52.381 13.29 0.00 0.00 3.18
2767 3343 1.551883 ACGGATGCGTAAAACCCTACT 59.448 47.619 11.73 0.00 0.00 2.57
2768 3344 1.931172 CGGATGCGTAAAACCCTACTG 59.069 52.381 0.00 0.00 0.00 2.74
2769 3345 1.669265 GGATGCGTAAAACCCTACTGC 59.331 52.381 0.00 0.00 0.00 4.40
2770 3346 2.629051 GATGCGTAAAACCCTACTGCT 58.371 47.619 0.00 0.00 0.00 4.24
2771 3347 1.803334 TGCGTAAAACCCTACTGCTG 58.197 50.000 0.00 0.00 0.00 4.41
2772 3348 0.446616 GCGTAAAACCCTACTGCTGC 59.553 55.000 0.00 0.00 0.00 5.25
2773 3349 1.944430 GCGTAAAACCCTACTGCTGCT 60.944 52.381 0.00 0.00 0.00 4.24
2774 3350 2.423577 CGTAAAACCCTACTGCTGCTT 58.576 47.619 0.00 0.00 0.00 3.91
2775 3351 2.159627 CGTAAAACCCTACTGCTGCTTG 59.840 50.000 0.00 0.00 0.00 4.01
2776 3352 2.364972 AAAACCCTACTGCTGCTTGT 57.635 45.000 0.00 2.63 0.00 3.16
2777 3353 2.364972 AAACCCTACTGCTGCTTGTT 57.635 45.000 0.00 0.00 0.00 2.83
2778 3354 2.364972 AACCCTACTGCTGCTTGTTT 57.635 45.000 0.00 0.00 0.00 2.83
2779 3355 1.609208 ACCCTACTGCTGCTTGTTTG 58.391 50.000 0.00 0.00 0.00 2.93
2780 3356 1.133792 ACCCTACTGCTGCTTGTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
2781 3357 1.267806 CCCTACTGCTGCTTGTTTGTG 59.732 52.381 0.00 0.00 0.00 3.33
2782 3358 1.949525 CCTACTGCTGCTTGTTTGTGT 59.050 47.619 0.00 0.00 0.00 3.72
2783 3359 2.287188 CCTACTGCTGCTTGTTTGTGTG 60.287 50.000 0.00 0.00 0.00 3.82
2784 3360 1.176527 ACTGCTGCTTGTTTGTGTGT 58.823 45.000 0.00 0.00 0.00 3.72
2785 3361 2.364632 ACTGCTGCTTGTTTGTGTGTA 58.635 42.857 0.00 0.00 0.00 2.90
2786 3362 2.951642 ACTGCTGCTTGTTTGTGTGTAT 59.048 40.909 0.00 0.00 0.00 2.29
2787 3363 3.381272 ACTGCTGCTTGTTTGTGTGTATT 59.619 39.130 0.00 0.00 0.00 1.89
2788 3364 3.704512 TGCTGCTTGTTTGTGTGTATTG 58.295 40.909 0.00 0.00 0.00 1.90
2789 3365 3.379688 TGCTGCTTGTTTGTGTGTATTGA 59.620 39.130 0.00 0.00 0.00 2.57
2790 3366 4.142293 TGCTGCTTGTTTGTGTGTATTGAA 60.142 37.500 0.00 0.00 0.00 2.69
2791 3367 4.984161 GCTGCTTGTTTGTGTGTATTGAAT 59.016 37.500 0.00 0.00 0.00 2.57
2792 3368 5.463061 GCTGCTTGTTTGTGTGTATTGAATT 59.537 36.000 0.00 0.00 0.00 2.17
2793 3369 6.346040 GCTGCTTGTTTGTGTGTATTGAATTC 60.346 38.462 0.00 0.00 0.00 2.17
2794 3370 6.804677 TGCTTGTTTGTGTGTATTGAATTCT 58.195 32.000 7.05 0.00 0.00 2.40
2795 3371 7.264221 TGCTTGTTTGTGTGTATTGAATTCTT 58.736 30.769 7.05 0.00 0.00 2.52
2796 3372 7.222417 TGCTTGTTTGTGTGTATTGAATTCTTG 59.778 33.333 7.05 0.00 0.00 3.02
2797 3373 7.462109 TTGTTTGTGTGTATTGAATTCTTGC 57.538 32.000 7.05 0.00 0.00 4.01
2798 3374 6.804677 TGTTTGTGTGTATTGAATTCTTGCT 58.195 32.000 7.05 0.00 0.00 3.91
2799 3375 6.917477 TGTTTGTGTGTATTGAATTCTTGCTC 59.083 34.615 7.05 0.52 0.00 4.26
2800 3376 6.631971 TTGTGTGTATTGAATTCTTGCTCA 57.368 33.333 7.05 2.96 0.00 4.26
2801 3377 6.245115 TGTGTGTATTGAATTCTTGCTCAG 57.755 37.500 7.05 0.00 0.00 3.35
2802 3378 5.181811 TGTGTGTATTGAATTCTTGCTCAGG 59.818 40.000 7.05 0.00 0.00 3.86
2803 3379 5.412594 GTGTGTATTGAATTCTTGCTCAGGA 59.587 40.000 7.05 0.00 0.00 3.86
2804 3380 5.645067 TGTGTATTGAATTCTTGCTCAGGAG 59.355 40.000 7.05 0.00 0.00 3.69
2813 3389 2.279120 GCTCAGGAGCGATGGACG 60.279 66.667 5.41 0.00 45.29 4.79
2822 3398 2.887568 CGATGGACGCTGCCAGAC 60.888 66.667 0.00 0.00 42.15 3.51
2823 3399 2.581354 GATGGACGCTGCCAGACT 59.419 61.111 0.00 0.00 42.15 3.24
2824 3400 1.812922 GATGGACGCTGCCAGACTG 60.813 63.158 0.00 0.00 42.15 3.51
2825 3401 2.230994 GATGGACGCTGCCAGACTGA 62.231 60.000 3.32 0.00 42.15 3.41
2826 3402 2.125753 GGACGCTGCCAGACTGAG 60.126 66.667 3.32 0.00 0.00 3.35
2827 3403 2.813042 GACGCTGCCAGACTGAGC 60.813 66.667 3.32 5.02 0.00 4.26
2830 3406 3.117171 GCTGCCAGACTGAGCGTG 61.117 66.667 3.32 4.57 0.00 5.34
2831 3407 2.433838 CTGCCAGACTGAGCGTGG 60.434 66.667 3.32 0.00 0.00 4.94
2832 3408 3.947132 CTGCCAGACTGAGCGTGGG 62.947 68.421 3.32 0.00 0.00 4.61
2833 3409 3.695606 GCCAGACTGAGCGTGGGA 61.696 66.667 3.32 0.00 0.00 4.37
2834 3410 2.575993 CCAGACTGAGCGTGGGAG 59.424 66.667 3.32 0.00 0.00 4.30
2835 3411 2.279069 CCAGACTGAGCGTGGGAGT 61.279 63.158 3.32 0.00 0.00 3.85
2836 3412 1.080230 CAGACTGAGCGTGGGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
2837 3413 1.531840 AGACTGAGCGTGGGAGTGT 60.532 57.895 0.00 0.00 0.00 3.55
2838 3414 1.115930 AGACTGAGCGTGGGAGTGTT 61.116 55.000 0.00 0.00 0.00 3.32
2839 3415 0.249911 GACTGAGCGTGGGAGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
2840 3416 0.249911 ACTGAGCGTGGGAGTGTTTC 60.250 55.000 0.00 0.00 0.00 2.78
2841 3417 0.034059 CTGAGCGTGGGAGTGTTTCT 59.966 55.000 0.00 0.00 0.00 2.52
2842 3418 0.249868 TGAGCGTGGGAGTGTTTCTG 60.250 55.000 0.00 0.00 0.00 3.02
2843 3419 0.951040 GAGCGTGGGAGTGTTTCTGG 60.951 60.000 0.00 0.00 0.00 3.86
2844 3420 1.227853 GCGTGGGAGTGTTTCTGGT 60.228 57.895 0.00 0.00 0.00 4.00
2845 3421 1.507141 GCGTGGGAGTGTTTCTGGTG 61.507 60.000 0.00 0.00 0.00 4.17
2846 3422 0.179056 CGTGGGAGTGTTTCTGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
2847 3423 1.745827 CGTGGGAGTGTTTCTGGTGTT 60.746 52.381 0.00 0.00 0.00 3.32
2848 3424 2.375146 GTGGGAGTGTTTCTGGTGTTT 58.625 47.619 0.00 0.00 0.00 2.83
2849 3425 2.357952 GTGGGAGTGTTTCTGGTGTTTC 59.642 50.000 0.00 0.00 0.00 2.78
2850 3426 1.602377 GGGAGTGTTTCTGGTGTTTCG 59.398 52.381 0.00 0.00 0.00 3.46
2851 3427 2.557317 GGAGTGTTTCTGGTGTTTCGA 58.443 47.619 0.00 0.00 0.00 3.71
2852 3428 2.940410 GGAGTGTTTCTGGTGTTTCGAA 59.060 45.455 0.00 0.00 0.00 3.71
2853 3429 3.242641 GGAGTGTTTCTGGTGTTTCGAAC 60.243 47.826 0.00 0.00 0.00 3.95
2854 3430 2.350498 AGTGTTTCTGGTGTTTCGAACG 59.650 45.455 0.00 0.00 0.00 3.95
2855 3431 2.349275 GTGTTTCTGGTGTTTCGAACGA 59.651 45.455 0.00 0.00 0.00 3.85
2856 3432 2.605818 TGTTTCTGGTGTTTCGAACGAG 59.394 45.455 0.00 0.00 0.00 4.18
2857 3433 2.589798 TTCTGGTGTTTCGAACGAGT 57.410 45.000 0.00 0.00 0.00 4.18
2858 3434 2.129823 TCTGGTGTTTCGAACGAGTC 57.870 50.000 0.00 0.00 0.00 3.36
2867 3443 3.857909 GAACGAGTCGAACTGGCC 58.142 61.111 21.50 0.00 0.00 5.36
2868 3444 1.006571 GAACGAGTCGAACTGGCCA 60.007 57.895 21.50 4.71 0.00 5.36
2869 3445 0.599204 GAACGAGTCGAACTGGCCAA 60.599 55.000 21.50 0.00 0.00 4.52
2870 3446 0.179067 AACGAGTCGAACTGGCCAAA 60.179 50.000 21.50 0.00 0.00 3.28
2871 3447 0.878961 ACGAGTCGAACTGGCCAAAC 60.879 55.000 21.50 0.00 0.00 2.93
2872 3448 1.566018 CGAGTCGAACTGGCCAAACC 61.566 60.000 7.01 0.00 39.84 3.27
2873 3449 1.228154 AGTCGAACTGGCCAAACCC 60.228 57.895 7.01 0.00 37.83 4.11
2874 3450 2.114411 TCGAACTGGCCAAACCCC 59.886 61.111 7.01 0.00 37.83 4.95
2875 3451 2.989253 CGAACTGGCCAAACCCCC 60.989 66.667 7.01 0.00 37.83 5.40
2876 3452 2.526110 GAACTGGCCAAACCCCCT 59.474 61.111 7.01 0.00 37.83 4.79
2877 3453 1.606601 GAACTGGCCAAACCCCCTC 60.607 63.158 7.01 0.00 37.83 4.30
2878 3454 2.081585 GAACTGGCCAAACCCCCTCT 62.082 60.000 7.01 0.00 37.83 3.69
2879 3455 0.774491 AACTGGCCAAACCCCCTCTA 60.774 55.000 7.01 0.00 37.83 2.43
2880 3456 1.303282 CTGGCCAAACCCCCTCTAC 59.697 63.158 7.01 0.00 37.83 2.59
2881 3457 2.271173 GGCCAAACCCCCTCTACG 59.729 66.667 0.00 0.00 0.00 3.51
2882 3458 2.599757 GGCCAAACCCCCTCTACGT 61.600 63.158 0.00 0.00 0.00 3.57
2883 3459 1.377612 GCCAAACCCCCTCTACGTT 59.622 57.895 0.00 0.00 0.00 3.99
2884 3460 0.958876 GCCAAACCCCCTCTACGTTG 60.959 60.000 0.00 0.00 0.00 4.10
2885 3461 0.958876 CCAAACCCCCTCTACGTTGC 60.959 60.000 0.00 0.00 0.00 4.17
2886 3462 1.004200 AAACCCCCTCTACGTTGCG 60.004 57.895 0.00 0.00 0.00 4.85
2887 3463 3.600898 AACCCCCTCTACGTTGCGC 62.601 63.158 0.00 0.00 0.00 6.09
2888 3464 3.771160 CCCCCTCTACGTTGCGCT 61.771 66.667 9.73 0.00 0.00 5.92
2889 3465 2.264794 CCCCTCTACGTTGCGCTT 59.735 61.111 9.73 0.00 0.00 4.68
2890 3466 2.100631 CCCCTCTACGTTGCGCTTG 61.101 63.158 9.73 0.00 0.00 4.01
2891 3467 2.100631 CCCTCTACGTTGCGCTTGG 61.101 63.158 9.73 0.00 0.00 3.61
2892 3468 2.100631 CCTCTACGTTGCGCTTGGG 61.101 63.158 9.73 0.00 0.00 4.12
2893 3469 2.740714 CTCTACGTTGCGCTTGGGC 61.741 63.158 9.73 2.60 0.00 5.36
2894 3470 3.799755 CTACGTTGCGCTTGGGCC 61.800 66.667 9.73 0.00 34.44 5.80
2895 3471 4.323477 TACGTTGCGCTTGGGCCT 62.323 61.111 9.73 0.00 34.44 5.19
2899 3475 4.284550 TTGCGCTTGGGCCTCCTT 62.285 61.111 9.73 0.00 34.44 3.36
2900 3476 3.808218 TTGCGCTTGGGCCTCCTTT 62.808 57.895 9.73 0.00 34.44 3.11
2901 3477 2.991540 GCGCTTGGGCCTCCTTTT 60.992 61.111 4.53 0.00 34.44 2.27
2902 3478 1.677633 GCGCTTGGGCCTCCTTTTA 60.678 57.895 4.53 0.00 34.44 1.52
2903 3479 1.037579 GCGCTTGGGCCTCCTTTTAT 61.038 55.000 4.53 0.00 34.44 1.40
2904 3480 1.749286 GCGCTTGGGCCTCCTTTTATA 60.749 52.381 4.53 0.00 34.44 0.98
2905 3481 1.947456 CGCTTGGGCCTCCTTTTATAC 59.053 52.381 4.53 0.00 34.44 1.47
2906 3482 2.421529 CGCTTGGGCCTCCTTTTATACT 60.422 50.000 4.53 0.00 34.44 2.12
2907 3483 3.632333 GCTTGGGCCTCCTTTTATACTT 58.368 45.455 4.53 0.00 0.00 2.24
2908 3484 4.023980 GCTTGGGCCTCCTTTTATACTTT 58.976 43.478 4.53 0.00 0.00 2.66
2909 3485 4.098044 GCTTGGGCCTCCTTTTATACTTTC 59.902 45.833 4.53 0.00 0.00 2.62
2910 3486 4.938575 TGGGCCTCCTTTTATACTTTCA 57.061 40.909 4.53 0.00 0.00 2.69
2911 3487 5.263872 TGGGCCTCCTTTTATACTTTCAA 57.736 39.130 4.53 0.00 0.00 2.69
2912 3488 5.261216 TGGGCCTCCTTTTATACTTTCAAG 58.739 41.667 4.53 0.00 0.00 3.02
2913 3489 4.645136 GGGCCTCCTTTTATACTTTCAAGG 59.355 45.833 0.84 0.00 37.70 3.61
2914 3490 4.645136 GGCCTCCTTTTATACTTTCAAGGG 59.355 45.833 0.00 0.00 37.07 3.95
2915 3491 4.645136 GCCTCCTTTTATACTTTCAAGGGG 59.355 45.833 0.00 0.00 36.73 4.79
2916 3492 5.810034 GCCTCCTTTTATACTTTCAAGGGGT 60.810 44.000 0.00 0.00 35.36 4.95
2917 3493 5.886474 CCTCCTTTTATACTTTCAAGGGGTC 59.114 44.000 0.00 0.00 35.36 4.46
2918 3494 6.457159 TCCTTTTATACTTTCAAGGGGTCA 57.543 37.500 0.00 0.00 37.07 4.02
2919 3495 7.039722 TCCTTTTATACTTTCAAGGGGTCAT 57.960 36.000 0.00 0.00 37.07 3.06
2920 3496 7.116736 TCCTTTTATACTTTCAAGGGGTCATC 58.883 38.462 0.00 0.00 37.07 2.92
2921 3497 6.038271 CCTTTTATACTTTCAAGGGGTCATCG 59.962 42.308 0.00 0.00 33.37 3.84
2922 3498 5.943349 TTATACTTTCAAGGGGTCATCGA 57.057 39.130 0.00 0.00 0.00 3.59
2923 3499 2.474410 ACTTTCAAGGGGTCATCGAC 57.526 50.000 0.00 0.00 0.00 4.20
2924 3500 1.697432 ACTTTCAAGGGGTCATCGACA 59.303 47.619 0.00 0.00 33.68 4.35
2925 3501 2.289694 ACTTTCAAGGGGTCATCGACAG 60.290 50.000 0.00 0.00 33.68 3.51
2926 3502 0.613260 TTCAAGGGGTCATCGACAGG 59.387 55.000 0.00 0.00 33.68 4.00
2927 3503 0.544357 TCAAGGGGTCATCGACAGGT 60.544 55.000 0.00 0.00 33.68 4.00
2928 3504 0.391661 CAAGGGGTCATCGACAGGTG 60.392 60.000 0.00 0.00 33.68 4.00
2929 3505 1.553690 AAGGGGTCATCGACAGGTGG 61.554 60.000 0.00 0.00 33.68 4.61
2930 3506 2.125106 GGGTCATCGACAGGTGGC 60.125 66.667 0.00 0.00 33.68 5.01
2931 3507 2.662596 GGTCATCGACAGGTGGCA 59.337 61.111 0.00 0.00 33.68 4.92
2932 3508 1.003839 GGTCATCGACAGGTGGCAA 60.004 57.895 0.00 0.00 33.68 4.52
2933 3509 1.298859 GGTCATCGACAGGTGGCAAC 61.299 60.000 0.00 0.00 33.68 4.17
2934 3510 1.374125 TCATCGACAGGTGGCAACG 60.374 57.895 0.00 0.00 42.51 4.10
2935 3511 1.667830 CATCGACAGGTGGCAACGT 60.668 57.895 0.00 0.00 42.51 3.99
2936 3512 0.389296 CATCGACAGGTGGCAACGTA 60.389 55.000 0.00 0.00 42.51 3.57
2937 3513 0.108804 ATCGACAGGTGGCAACGTAG 60.109 55.000 0.00 0.00 42.51 3.51
2938 3514 1.174078 TCGACAGGTGGCAACGTAGA 61.174 55.000 0.00 1.51 42.51 2.59
2939 3515 1.007336 CGACAGGTGGCAACGTAGAC 61.007 60.000 0.00 0.00 42.51 2.59
2940 3516 0.317479 GACAGGTGGCAACGTAGACT 59.683 55.000 0.00 0.00 42.51 3.24
2941 3517 1.542915 GACAGGTGGCAACGTAGACTA 59.457 52.381 0.00 0.00 42.51 2.59
2942 3518 1.544691 ACAGGTGGCAACGTAGACTAG 59.455 52.381 0.00 0.00 42.51 2.57
2943 3519 1.816835 CAGGTGGCAACGTAGACTAGA 59.183 52.381 0.00 0.00 42.51 2.43
2944 3520 2.230508 CAGGTGGCAACGTAGACTAGAA 59.769 50.000 0.00 0.00 42.51 2.10
2945 3521 2.492484 AGGTGGCAACGTAGACTAGAAG 59.508 50.000 0.00 0.00 42.51 2.85
2946 3522 2.416972 GGTGGCAACGTAGACTAGAAGG 60.417 54.545 0.00 0.00 42.51 3.46
2947 3523 1.822990 TGGCAACGTAGACTAGAAGGG 59.177 52.381 0.00 0.00 42.51 3.95
2948 3524 1.823610 GGCAACGTAGACTAGAAGGGT 59.176 52.381 0.00 0.00 0.00 4.34
2949 3525 3.019564 GGCAACGTAGACTAGAAGGGTA 58.980 50.000 0.00 0.00 0.00 3.69
2950 3526 3.445096 GGCAACGTAGACTAGAAGGGTAA 59.555 47.826 0.00 0.00 0.00 2.85
2951 3527 4.082026 GGCAACGTAGACTAGAAGGGTAAA 60.082 45.833 0.00 0.00 0.00 2.01
2952 3528 5.473039 GCAACGTAGACTAGAAGGGTAAAA 58.527 41.667 0.00 0.00 0.00 1.52
2953 3529 5.928264 GCAACGTAGACTAGAAGGGTAAAAA 59.072 40.000 0.00 0.00 0.00 1.94
2954 3530 6.592994 GCAACGTAGACTAGAAGGGTAAAAAT 59.407 38.462 0.00 0.00 0.00 1.82
2955 3531 7.412672 GCAACGTAGACTAGAAGGGTAAAAATG 60.413 40.741 0.00 0.00 0.00 2.32
2956 3532 6.637657 ACGTAGACTAGAAGGGTAAAAATGG 58.362 40.000 0.00 0.00 0.00 3.16
2957 3533 6.438425 ACGTAGACTAGAAGGGTAAAAATGGA 59.562 38.462 0.00 0.00 0.00 3.41
2958 3534 7.038799 ACGTAGACTAGAAGGGTAAAAATGGAA 60.039 37.037 0.00 0.00 0.00 3.53
2959 3535 7.820872 CGTAGACTAGAAGGGTAAAAATGGAAA 59.179 37.037 0.00 0.00 0.00 3.13
2960 3536 9.511272 GTAGACTAGAAGGGTAAAAATGGAAAA 57.489 33.333 0.00 0.00 0.00 2.29
2961 3537 8.637196 AGACTAGAAGGGTAAAAATGGAAAAG 57.363 34.615 0.00 0.00 0.00 2.27
2962 3538 7.670140 AGACTAGAAGGGTAAAAATGGAAAAGG 59.330 37.037 0.00 0.00 0.00 3.11
2963 3539 7.532199 ACTAGAAGGGTAAAAATGGAAAAGGA 58.468 34.615 0.00 0.00 0.00 3.36
2964 3540 8.177456 ACTAGAAGGGTAAAAATGGAAAAGGAT 58.823 33.333 0.00 0.00 0.00 3.24
2965 3541 7.244886 AGAAGGGTAAAAATGGAAAAGGATG 57.755 36.000 0.00 0.00 0.00 3.51
2966 3542 5.420725 AGGGTAAAAATGGAAAAGGATGC 57.579 39.130 0.00 0.00 0.00 3.91
2967 3543 4.081697 AGGGTAAAAATGGAAAAGGATGCG 60.082 41.667 0.00 0.00 0.00 4.73
2968 3544 4.180817 GGTAAAAATGGAAAAGGATGCGG 58.819 43.478 0.00 0.00 0.00 5.69
2969 3545 4.322424 GGTAAAAATGGAAAAGGATGCGGT 60.322 41.667 0.00 0.00 0.00 5.68
2970 3546 5.105675 GGTAAAAATGGAAAAGGATGCGGTA 60.106 40.000 0.00 0.00 0.00 4.02
2971 3547 4.718940 AAAATGGAAAAGGATGCGGTAG 57.281 40.909 0.00 0.00 0.00 3.18
2972 3548 2.348411 ATGGAAAAGGATGCGGTAGG 57.652 50.000 0.00 0.00 0.00 3.18
2973 3549 0.988832 TGGAAAAGGATGCGGTAGGT 59.011 50.000 0.00 0.00 0.00 3.08
2974 3550 1.339631 TGGAAAAGGATGCGGTAGGTG 60.340 52.381 0.00 0.00 0.00 4.00
2975 3551 0.733150 GAAAAGGATGCGGTAGGTGC 59.267 55.000 0.00 0.00 0.00 5.01
2977 3553 0.392998 AAAGGATGCGGTAGGTGCAG 60.393 55.000 0.00 0.00 46.98 4.41
2978 3554 2.876368 AAGGATGCGGTAGGTGCAGC 62.876 60.000 8.11 8.11 46.98 5.25
2979 3555 2.187946 GATGCGGTAGGTGCAGCT 59.812 61.111 23.72 23.72 46.98 4.24
2980 3556 1.441729 GATGCGGTAGGTGCAGCTA 59.558 57.895 21.35 21.35 46.98 3.32
2981 3557 0.876342 GATGCGGTAGGTGCAGCTAC 60.876 60.000 36.72 36.72 46.98 3.58
2982 3558 2.202892 GCGGTAGGTGCAGCTACC 60.203 66.667 44.51 44.51 41.48 3.18
2984 3560 2.202892 GGTAGGTGCAGCTACCGC 60.203 66.667 43.21 29.07 45.56 5.68
2986 3562 1.389609 GGTAGGTGCAGCTACCGCTA 61.390 60.000 43.21 18.09 46.99 4.26
2987 3563 0.248949 GTAGGTGCAGCTACCGCTAC 60.249 60.000 35.34 19.17 46.99 3.58
2988 3564 0.395311 TAGGTGCAGCTACCGCTACT 60.395 55.000 21.35 0.00 46.99 2.57
2989 3565 1.519455 GGTGCAGCTACCGCTACTG 60.519 63.158 9.07 0.00 46.99 2.74
2990 3566 1.215647 GTGCAGCTACCGCTACTGT 59.784 57.895 0.00 0.00 46.99 3.55
2991 3567 1.078759 GTGCAGCTACCGCTACTGTG 61.079 60.000 0.00 0.00 46.99 3.66
2992 3568 1.519455 GCAGCTACCGCTACTGTGG 60.519 63.158 0.00 0.00 46.99 4.17
2993 3569 1.945354 GCAGCTACCGCTACTGTGGA 61.945 60.000 2.42 0.00 46.99 4.02
2994 3570 0.747255 CAGCTACCGCTACTGTGGAT 59.253 55.000 2.42 0.00 46.99 3.41
2995 3571 1.954382 CAGCTACCGCTACTGTGGATA 59.046 52.381 2.42 0.00 46.99 2.59
2996 3572 1.955080 AGCTACCGCTACTGTGGATAC 59.045 52.381 2.42 0.00 46.79 2.24
2997 3573 1.679680 GCTACCGCTACTGTGGATACA 59.320 52.381 2.42 0.00 46.34 2.29
3009 3585 1.200519 TGGATACAGTGCACCCTACC 58.799 55.000 14.63 11.53 46.17 3.18
3010 3586 1.273609 TGGATACAGTGCACCCTACCT 60.274 52.381 14.63 0.00 46.17 3.08
3011 3587 2.023791 TGGATACAGTGCACCCTACCTA 60.024 50.000 14.63 0.00 46.17 3.08
3012 3588 3.036091 GGATACAGTGCACCCTACCTAA 58.964 50.000 14.63 0.00 0.00 2.69
3013 3589 3.181468 GGATACAGTGCACCCTACCTAAC 60.181 52.174 14.63 0.00 0.00 2.34
3014 3590 2.025636 ACAGTGCACCCTACCTAACT 57.974 50.000 14.63 0.00 0.00 2.24
3015 3591 1.900486 ACAGTGCACCCTACCTAACTC 59.100 52.381 14.63 0.00 0.00 3.01
3016 3592 2.180276 CAGTGCACCCTACCTAACTCT 58.820 52.381 14.63 0.00 0.00 3.24
3017 3593 2.093973 CAGTGCACCCTACCTAACTCTG 60.094 54.545 14.63 0.00 0.00 3.35
3018 3594 2.176889 GTGCACCCTACCTAACTCTGA 58.823 52.381 5.22 0.00 0.00 3.27
3019 3595 2.094130 GTGCACCCTACCTAACTCTGAC 60.094 54.545 5.22 0.00 0.00 3.51
3020 3596 1.134560 GCACCCTACCTAACTCTGACG 59.865 57.143 0.00 0.00 0.00 4.35
3021 3597 1.749634 CACCCTACCTAACTCTGACGG 59.250 57.143 0.00 0.00 0.00 4.79
3022 3598 0.745468 CCCTACCTAACTCTGACGGC 59.255 60.000 0.00 0.00 0.00 5.68
3023 3599 1.471119 CCTACCTAACTCTGACGGCA 58.529 55.000 0.00 0.00 0.00 5.69
3024 3600 1.405821 CCTACCTAACTCTGACGGCAG 59.594 57.143 13.65 13.65 43.67 4.85
3025 3601 1.405821 CTACCTAACTCTGACGGCAGG 59.594 57.143 20.50 11.97 42.53 4.85
3030 3606 2.997315 CTCTGACGGCAGGGGACA 60.997 66.667 20.50 0.00 42.53 4.02
3031 3607 2.525629 TCTGACGGCAGGGGACAA 60.526 61.111 20.50 0.00 42.53 3.18
3032 3608 2.046892 CTGACGGCAGGGGACAAG 60.047 66.667 11.57 0.00 38.51 3.16
3033 3609 3.612247 CTGACGGCAGGGGACAAGG 62.612 68.421 11.57 0.00 38.51 3.61
3034 3610 4.410400 GACGGCAGGGGACAAGGG 62.410 72.222 0.00 0.00 0.00 3.95
3037 3613 4.066139 GGCAGGGGACAAGGGCAT 62.066 66.667 0.00 0.00 0.00 4.40
3038 3614 2.037847 GCAGGGGACAAGGGCATT 59.962 61.111 0.00 0.00 0.00 3.56
3039 3615 1.306296 GCAGGGGACAAGGGCATTA 59.694 57.895 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.452823 ACCCCTGTCCATAGCTATCTCT 59.547 50.000 2.34 0.00 0.00 3.10
1 2 2.564947 CACCCCTGTCCATAGCTATCTC 59.435 54.545 2.34 0.00 0.00 2.75
2 3 2.614259 CACCCCTGTCCATAGCTATCT 58.386 52.381 2.34 0.00 0.00 1.98
3 4 1.002544 GCACCCCTGTCCATAGCTATC 59.997 57.143 2.34 0.00 0.00 2.08
4 5 1.059913 GCACCCCTGTCCATAGCTAT 58.940 55.000 0.00 0.00 0.00 2.97
5 6 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
6 7 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
7 8 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
8 9 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
9 10 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
10 11 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
12 13 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
13 14 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
14 15 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
15 16 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
16 17 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
17 18 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
18 19 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
19 20 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
20 21 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
21 22 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
22 23 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
23 24 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
24 25 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
25 26 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
26 27 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
27 28 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
28 29 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
29 30 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
30 31 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
31 32 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
32 33 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
33 34 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
34 35 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
35 36 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
36 37 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
37 38 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
38 39 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
39 40 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
40 41 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
41 42 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
42 43 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
43 44 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
44 45 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
45 46 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
53 54 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
54 55 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
55 56 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
56 57 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
57 58 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
58 59 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
59 60 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
60 61 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
61 62 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
62 63 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
63 64 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
64 65 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
79 80 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
80 81 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
81 82 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
82 83 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
83 84 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
84 85 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
85 86 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
86 87 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
87 88 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
88 89 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
89 90 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
90 91 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
99 100 3.383761 GAATGCAGTCCCAAACAAGTTG 58.616 45.455 1.86 0.00 36.94 3.16
100 101 2.034558 CGAATGCAGTCCCAAACAAGTT 59.965 45.455 8.83 0.00 0.00 2.66
101 102 1.608590 CGAATGCAGTCCCAAACAAGT 59.391 47.619 8.83 0.00 0.00 3.16
102 103 1.608590 ACGAATGCAGTCCCAAACAAG 59.391 47.619 8.83 0.00 0.00 3.16
103 104 1.686355 ACGAATGCAGTCCCAAACAA 58.314 45.000 8.83 0.00 0.00 2.83
104 105 1.606668 GAACGAATGCAGTCCCAAACA 59.393 47.619 8.83 0.00 0.00 2.83
105 106 1.606668 TGAACGAATGCAGTCCCAAAC 59.393 47.619 8.83 0.00 0.00 2.93
106 107 1.974265 TGAACGAATGCAGTCCCAAA 58.026 45.000 8.83 0.00 0.00 3.28
107 108 2.198827 ATGAACGAATGCAGTCCCAA 57.801 45.000 8.83 0.00 0.00 4.12
108 109 2.198827 AATGAACGAATGCAGTCCCA 57.801 45.000 8.83 4.87 0.00 4.37
109 110 4.695217 TTAAATGAACGAATGCAGTCCC 57.305 40.909 8.83 0.00 0.00 4.46
110 111 9.599322 CTATAATTAAATGAACGAATGCAGTCC 57.401 33.333 8.83 0.00 0.00 3.85
216 218 7.699391 CACAATAGGCTGCATTAATATACATGC 59.301 37.037 0.50 10.75 45.20 4.06
217 219 7.699391 GCACAATAGGCTGCATTAATATACATG 59.301 37.037 0.50 0.00 33.31 3.21
218 220 7.394077 TGCACAATAGGCTGCATTAATATACAT 59.606 33.333 0.50 0.00 38.49 2.29
219 221 6.714356 TGCACAATAGGCTGCATTAATATACA 59.286 34.615 0.50 0.00 38.49 2.29
220 222 7.144722 TGCACAATAGGCTGCATTAATATAC 57.855 36.000 0.50 0.00 38.49 1.47
221 223 7.757941 TTGCACAATAGGCTGCATTAATATA 57.242 32.000 0.50 0.00 42.86 0.86
222 224 6.653526 TTGCACAATAGGCTGCATTAATAT 57.346 33.333 0.50 0.00 42.86 1.28
223 225 6.568271 CGATTGCACAATAGGCTGCATTAATA 60.568 38.462 0.50 0.00 42.86 0.98
224 226 5.535333 GATTGCACAATAGGCTGCATTAAT 58.465 37.500 0.50 0.00 42.86 1.40
225 227 4.497842 CGATTGCACAATAGGCTGCATTAA 60.498 41.667 0.50 0.00 42.86 1.40
226 228 3.003585 CGATTGCACAATAGGCTGCATTA 59.996 43.478 0.50 0.00 42.86 1.90
293 309 6.262944 AGCATAACAGAATTTCAGTTGTGTCA 59.737 34.615 22.84 5.38 37.33 3.58
322 338 7.792925 ACCGCAGAAGCAAAATAAAATAAAAC 58.207 30.769 0.00 0.00 42.27 2.43
426 453 5.240403 AGAATTCAGGCTTCTTTTCTGTGTC 59.760 40.000 8.44 0.00 28.55 3.67
959 1015 7.881232 AGAATAACCGGAATGTTAAGACAAGAA 59.119 33.333 9.46 0.00 39.66 2.52
1064 1123 0.318441 TTGTGCAAGTCGAGGAGGAG 59.682 55.000 0.00 0.00 0.00 3.69
1065 1124 0.318441 CTTGTGCAAGTCGAGGAGGA 59.682 55.000 3.91 0.00 33.87 3.71
1066 1125 0.318441 TCTTGTGCAAGTCGAGGAGG 59.682 55.000 11.17 0.00 39.38 4.30
1082 1144 3.833070 ACGTGGTGAGATAGACCTTTCTT 59.167 43.478 0.00 0.00 34.26 2.52
1468 1530 1.839354 TCATTCAGCTACCATGGCAGA 59.161 47.619 16.73 0.00 0.00 4.26
1589 1671 0.907486 TCCTCATCTGAGCCACCAAG 59.093 55.000 1.51 0.00 40.75 3.61
1907 2457 0.172803 GTCGTCCGTAAGCTCCATGT 59.827 55.000 0.00 0.00 0.00 3.21
1924 2474 2.467880 TCCCAGGAGTTGTCATAGGTC 58.532 52.381 0.00 0.00 0.00 3.85
1999 2567 2.693871 GGGTCCCATGGTCCAGCAT 61.694 63.158 20.21 0.00 32.60 3.79
2134 2702 1.895131 AGCAAAACTCAAATCCGCCAT 59.105 42.857 0.00 0.00 0.00 4.40
2175 2743 1.021390 AGCGCTGGTACAATGCTGTC 61.021 55.000 10.39 0.00 45.21 3.51
2242 2810 9.902684 ATATTCCCTTCTATGATGTGATCAATC 57.097 33.333 0.00 4.07 43.50 2.67
2502 3070 1.131303 ACGGGACATGACAAAGGGGA 61.131 55.000 0.00 0.00 0.00 4.81
2538 3106 8.736244 GCTGGAGTACCACTCAAAATAAAAATA 58.264 33.333 8.47 0.00 46.79 1.40
2539 3107 7.309805 GGCTGGAGTACCACTCAAAATAAAAAT 60.310 37.037 8.47 0.00 46.79 1.82
2545 3113 2.375174 TGGCTGGAGTACCACTCAAAAT 59.625 45.455 8.47 0.00 46.79 1.82
2595 3171 8.759641 CGACAAAATGGTCAATTAAAAATCACA 58.240 29.630 0.00 0.00 37.66 3.58
2619 3195 2.040442 TGGATCAGCCTTCCCCGA 59.960 61.111 0.00 0.00 37.63 5.14
2620 3196 2.190578 GTGGATCAGCCTTCCCCG 59.809 66.667 0.00 0.00 37.63 5.73
2621 3197 1.863155 TTGGTGGATCAGCCTTCCCC 61.863 60.000 0.00 0.00 37.63 4.81
2622 3198 0.681243 GTTGGTGGATCAGCCTTCCC 60.681 60.000 0.00 0.00 37.63 3.97
2623 3199 0.038166 TGTTGGTGGATCAGCCTTCC 59.962 55.000 0.00 0.00 37.63 3.46
2624 3200 1.168714 GTGTTGGTGGATCAGCCTTC 58.831 55.000 0.00 0.00 37.63 3.46
2625 3201 0.251341 GGTGTTGGTGGATCAGCCTT 60.251 55.000 0.00 0.00 37.63 4.35
2626 3202 1.136329 AGGTGTTGGTGGATCAGCCT 61.136 55.000 0.00 0.00 37.63 4.58
2627 3203 0.618458 TAGGTGTTGGTGGATCAGCC 59.382 55.000 0.00 0.00 37.10 4.85
2628 3204 2.292267 CATAGGTGTTGGTGGATCAGC 58.708 52.381 0.00 0.00 0.00 4.26
2629 3205 2.421952 CCCATAGGTGTTGGTGGATCAG 60.422 54.545 0.00 0.00 33.53 2.90
2630 3206 1.563879 CCCATAGGTGTTGGTGGATCA 59.436 52.381 0.00 0.00 33.53 2.92
2631 3207 1.133792 CCCCATAGGTGTTGGTGGATC 60.134 57.143 0.00 0.00 33.53 3.36
2632 3208 0.926293 CCCCATAGGTGTTGGTGGAT 59.074 55.000 0.00 0.00 33.53 3.41
2633 3209 0.178858 TCCCCATAGGTGTTGGTGGA 60.179 55.000 0.00 0.00 36.75 4.02
2634 3210 0.034477 GTCCCCATAGGTGTTGGTGG 60.034 60.000 0.00 0.00 36.75 4.61
2635 3211 0.695924 TGTCCCCATAGGTGTTGGTG 59.304 55.000 0.00 0.00 36.75 4.17
2636 3212 0.991920 CTGTCCCCATAGGTGTTGGT 59.008 55.000 0.00 0.00 36.75 3.67
2637 3213 0.255890 CCTGTCCCCATAGGTGTTGG 59.744 60.000 0.00 0.00 36.75 3.77
2638 3214 0.255890 CCCTGTCCCCATAGGTGTTG 59.744 60.000 0.00 0.00 36.75 3.33
2639 3215 1.571773 GCCCTGTCCCCATAGGTGTT 61.572 60.000 0.00 0.00 36.75 3.32
2640 3216 2.001269 GCCCTGTCCCCATAGGTGT 61.001 63.158 0.00 0.00 36.75 4.16
2641 3217 2.757124 GGCCCTGTCCCCATAGGTG 61.757 68.421 0.00 0.00 36.75 4.00
2642 3218 2.368329 GGCCCTGTCCCCATAGGT 60.368 66.667 0.00 0.00 36.75 3.08
2643 3219 3.178611 GGGCCCTGTCCCCATAGG 61.179 72.222 17.04 0.00 42.36 2.57
2655 3231 2.994995 CGAACCAAAAGGGGGCCC 60.995 66.667 15.76 15.76 42.91 5.80
2656 3232 2.994995 CCGAACCAAAAGGGGGCC 60.995 66.667 0.00 0.00 42.91 5.80
2657 3233 1.977009 CTCCGAACCAAAAGGGGGC 60.977 63.158 0.00 0.00 42.91 5.80
2658 3234 1.304134 CCTCCGAACCAAAAGGGGG 60.304 63.158 0.00 0.00 42.91 5.40
2659 3235 1.304134 CCCTCCGAACCAAAAGGGG 60.304 63.158 0.00 0.00 44.09 4.79
2660 3236 1.304134 CCCCTCCGAACCAAAAGGG 60.304 63.158 0.00 0.00 46.85 3.95
2661 3237 1.304134 CCCCCTCCGAACCAAAAGG 60.304 63.158 0.00 0.00 0.00 3.11
2662 3238 4.415783 CCCCCTCCGAACCAAAAG 57.584 61.111 0.00 0.00 0.00 2.27
2681 3257 2.383527 GCTCTTTGTGCGACCTCCG 61.384 63.158 0.00 0.00 42.21 4.63
2682 3258 3.567473 GCTCTTTGTGCGACCTCC 58.433 61.111 0.00 0.00 0.00 4.30
2689 3265 1.424493 CCTCGATCCGCTCTTTGTGC 61.424 60.000 0.00 0.00 0.00 4.57
2690 3266 1.424493 GCCTCGATCCGCTCTTTGTG 61.424 60.000 0.00 0.00 0.00 3.33
2691 3267 1.153549 GCCTCGATCCGCTCTTTGT 60.154 57.895 0.00 0.00 0.00 2.83
2692 3268 2.233654 CGCCTCGATCCGCTCTTTG 61.234 63.158 0.00 0.00 0.00 2.77
2693 3269 2.105128 CGCCTCGATCCGCTCTTT 59.895 61.111 0.00 0.00 0.00 2.52
2694 3270 3.905678 CCGCCTCGATCCGCTCTT 61.906 66.667 0.00 0.00 0.00 2.85
2695 3271 3.769369 TACCGCCTCGATCCGCTCT 62.769 63.158 0.00 0.00 0.00 4.09
2696 3272 3.285215 TACCGCCTCGATCCGCTC 61.285 66.667 0.00 0.00 0.00 5.03
2697 3273 3.593794 GTACCGCCTCGATCCGCT 61.594 66.667 0.00 0.00 0.00 5.52
2698 3274 3.208884 ATGTACCGCCTCGATCCGC 62.209 63.158 0.00 0.00 0.00 5.54
2699 3275 1.371758 CATGTACCGCCTCGATCCG 60.372 63.158 0.00 0.00 0.00 4.18
2700 3276 1.664965 GCATGTACCGCCTCGATCC 60.665 63.158 0.00 0.00 0.00 3.36
2701 3277 2.016704 CGCATGTACCGCCTCGATC 61.017 63.158 0.00 0.00 0.00 3.69
2702 3278 2.027605 CGCATGTACCGCCTCGAT 59.972 61.111 0.00 0.00 0.00 3.59
2703 3279 3.120979 CTCGCATGTACCGCCTCGA 62.121 63.158 0.00 0.00 0.00 4.04
2704 3280 2.655364 CTCGCATGTACCGCCTCG 60.655 66.667 0.00 0.00 0.00 4.63
2705 3281 2.962253 GCTCGCATGTACCGCCTC 60.962 66.667 0.00 0.00 0.00 4.70
2706 3282 3.723235 CTGCTCGCATGTACCGCCT 62.723 63.158 0.00 0.00 0.00 5.52
2707 3283 3.264897 CTGCTCGCATGTACCGCC 61.265 66.667 0.00 0.00 0.00 6.13
2708 3284 1.635663 AAACTGCTCGCATGTACCGC 61.636 55.000 0.00 0.00 0.00 5.68
2709 3285 0.796312 AAAACTGCTCGCATGTACCG 59.204 50.000 0.00 0.00 0.00 4.02
2710 3286 2.989422 AAAAACTGCTCGCATGTACC 57.011 45.000 0.00 0.00 0.00 3.34
2711 3287 3.425758 GGGTAAAAACTGCTCGCATGTAC 60.426 47.826 0.00 0.00 0.00 2.90
2712 3288 2.745281 GGGTAAAAACTGCTCGCATGTA 59.255 45.455 0.00 0.00 0.00 2.29
2713 3289 1.539827 GGGTAAAAACTGCTCGCATGT 59.460 47.619 0.00 0.00 0.00 3.21
2714 3290 1.539388 TGGGTAAAAACTGCTCGCATG 59.461 47.619 0.00 0.00 0.00 4.06
2715 3291 1.812571 CTGGGTAAAAACTGCTCGCAT 59.187 47.619 0.00 0.00 0.00 4.73
2716 3292 1.234821 CTGGGTAAAAACTGCTCGCA 58.765 50.000 0.00 0.00 0.00 5.10
2717 3293 0.109735 GCTGGGTAAAAACTGCTCGC 60.110 55.000 0.00 0.00 0.00 5.03
2718 3294 1.523758 AGCTGGGTAAAAACTGCTCG 58.476 50.000 0.00 0.00 37.31 5.03
2719 3295 2.095718 CGAAGCTGGGTAAAAACTGCTC 60.096 50.000 0.00 0.00 40.35 4.26
2720 3296 1.880027 CGAAGCTGGGTAAAAACTGCT 59.120 47.619 0.00 0.00 42.56 4.24
2721 3297 1.068541 CCGAAGCTGGGTAAAAACTGC 60.069 52.381 0.00 0.00 0.00 4.40
2722 3298 1.539827 CCCGAAGCTGGGTAAAAACTG 59.460 52.381 0.68 0.00 44.76 3.16
2723 3299 1.905637 CCCGAAGCTGGGTAAAAACT 58.094 50.000 0.68 0.00 44.76 2.66
2748 3324 1.931172 CAGTAGGGTTTTACGCATCCG 59.069 52.381 0.00 0.00 41.14 4.18
2749 3325 1.669265 GCAGTAGGGTTTTACGCATCC 59.331 52.381 0.00 0.00 32.95 3.51
2750 3326 2.351726 CAGCAGTAGGGTTTTACGCATC 59.648 50.000 0.00 0.00 32.95 3.91
2751 3327 2.356135 CAGCAGTAGGGTTTTACGCAT 58.644 47.619 0.00 0.00 32.95 4.73
2752 3328 1.803334 CAGCAGTAGGGTTTTACGCA 58.197 50.000 0.00 0.00 32.95 5.24
2753 3329 0.446616 GCAGCAGTAGGGTTTTACGC 59.553 55.000 0.00 0.00 0.00 4.42
2754 3330 2.094762 AGCAGCAGTAGGGTTTTACG 57.905 50.000 0.00 0.00 0.00 3.18
2755 3331 3.146847 ACAAGCAGCAGTAGGGTTTTAC 58.853 45.455 0.00 0.00 0.00 2.01
2756 3332 3.502123 ACAAGCAGCAGTAGGGTTTTA 57.498 42.857 0.00 0.00 0.00 1.52
2757 3333 2.364972 ACAAGCAGCAGTAGGGTTTT 57.635 45.000 0.00 0.00 0.00 2.43
2758 3334 2.362077 CAAACAAGCAGCAGTAGGGTTT 59.638 45.455 0.00 0.00 0.00 3.27
2759 3335 1.956477 CAAACAAGCAGCAGTAGGGTT 59.044 47.619 0.00 0.00 0.00 4.11
2760 3336 1.133792 ACAAACAAGCAGCAGTAGGGT 60.134 47.619 0.00 0.00 0.00 4.34
2761 3337 1.267806 CACAAACAAGCAGCAGTAGGG 59.732 52.381 0.00 0.00 0.00 3.53
2762 3338 1.949525 ACACAAACAAGCAGCAGTAGG 59.050 47.619 0.00 0.00 0.00 3.18
2763 3339 2.355756 ACACACAAACAAGCAGCAGTAG 59.644 45.455 0.00 0.00 0.00 2.57
2764 3340 2.364632 ACACACAAACAAGCAGCAGTA 58.635 42.857 0.00 0.00 0.00 2.74
2765 3341 1.176527 ACACACAAACAAGCAGCAGT 58.823 45.000 0.00 0.00 0.00 4.40
2766 3342 3.631145 ATACACACAAACAAGCAGCAG 57.369 42.857 0.00 0.00 0.00 4.24
2767 3343 3.379688 TCAATACACACAAACAAGCAGCA 59.620 39.130 0.00 0.00 0.00 4.41
2768 3344 3.963665 TCAATACACACAAACAAGCAGC 58.036 40.909 0.00 0.00 0.00 5.25
2769 3345 6.919662 AGAATTCAATACACACAAACAAGCAG 59.080 34.615 8.44 0.00 0.00 4.24
2770 3346 6.804677 AGAATTCAATACACACAAACAAGCA 58.195 32.000 8.44 0.00 0.00 3.91
2771 3347 7.558137 CAAGAATTCAATACACACAAACAAGC 58.442 34.615 8.44 0.00 0.00 4.01
2772 3348 7.436080 AGCAAGAATTCAATACACACAAACAAG 59.564 33.333 8.44 0.00 0.00 3.16
2773 3349 7.264221 AGCAAGAATTCAATACACACAAACAA 58.736 30.769 8.44 0.00 0.00 2.83
2774 3350 6.804677 AGCAAGAATTCAATACACACAAACA 58.195 32.000 8.44 0.00 0.00 2.83
2775 3351 6.917477 TGAGCAAGAATTCAATACACACAAAC 59.083 34.615 8.44 0.00 0.00 2.93
2776 3352 7.036996 TGAGCAAGAATTCAATACACACAAA 57.963 32.000 8.44 0.00 0.00 2.83
2777 3353 6.294120 CCTGAGCAAGAATTCAATACACACAA 60.294 38.462 8.44 0.00 0.00 3.33
2778 3354 5.181811 CCTGAGCAAGAATTCAATACACACA 59.818 40.000 8.44 0.00 0.00 3.72
2779 3355 5.412594 TCCTGAGCAAGAATTCAATACACAC 59.587 40.000 8.44 0.00 0.00 3.82
2780 3356 5.559770 TCCTGAGCAAGAATTCAATACACA 58.440 37.500 8.44 0.33 0.00 3.72
2781 3357 6.116680 CTCCTGAGCAAGAATTCAATACAC 57.883 41.667 8.44 0.00 0.00 2.90
2805 3381 2.887568 GTCTGGCAGCGTCCATCG 60.888 66.667 10.34 0.00 43.12 3.84
2806 3382 1.812922 CAGTCTGGCAGCGTCCATC 60.813 63.158 10.34 0.00 35.22 3.51
2807 3383 2.236223 CTCAGTCTGGCAGCGTCCAT 62.236 60.000 10.34 0.00 35.22 3.41
2808 3384 2.917227 TCAGTCTGGCAGCGTCCA 60.917 61.111 10.34 0.17 34.42 4.02
2809 3385 2.125753 CTCAGTCTGGCAGCGTCC 60.126 66.667 10.34 0.00 0.00 4.79
2810 3386 2.813042 GCTCAGTCTGGCAGCGTC 60.813 66.667 10.34 2.85 0.00 5.19
2813 3389 3.117171 CACGCTCAGTCTGGCAGC 61.117 66.667 10.34 5.16 0.00 5.25
2814 3390 2.433838 CCACGCTCAGTCTGGCAG 60.434 66.667 8.58 8.58 0.00 4.85
2815 3391 4.007644 CCCACGCTCAGTCTGGCA 62.008 66.667 12.09 0.00 0.00 4.92
2816 3392 3.655810 CTCCCACGCTCAGTCTGGC 62.656 68.421 0.00 1.74 0.00 4.85
2817 3393 2.279069 ACTCCCACGCTCAGTCTGG 61.279 63.158 0.00 0.00 0.00 3.86
2818 3394 1.080230 CACTCCCACGCTCAGTCTG 60.080 63.158 0.00 0.00 0.00 3.51
2819 3395 1.115930 AACACTCCCACGCTCAGTCT 61.116 55.000 0.00 0.00 0.00 3.24
2820 3396 0.249911 AAACACTCCCACGCTCAGTC 60.250 55.000 0.00 0.00 0.00 3.51
2821 3397 0.249911 GAAACACTCCCACGCTCAGT 60.250 55.000 0.00 0.00 0.00 3.41
2822 3398 0.034059 AGAAACACTCCCACGCTCAG 59.966 55.000 0.00 0.00 0.00 3.35
2823 3399 0.249868 CAGAAACACTCCCACGCTCA 60.250 55.000 0.00 0.00 0.00 4.26
2824 3400 0.951040 CCAGAAACACTCCCACGCTC 60.951 60.000 0.00 0.00 0.00 5.03
2825 3401 1.071471 CCAGAAACACTCCCACGCT 59.929 57.895 0.00 0.00 0.00 5.07
2826 3402 1.227853 ACCAGAAACACTCCCACGC 60.228 57.895 0.00 0.00 0.00 5.34
2827 3403 0.179056 ACACCAGAAACACTCCCACG 60.179 55.000 0.00 0.00 0.00 4.94
2828 3404 2.052782 AACACCAGAAACACTCCCAC 57.947 50.000 0.00 0.00 0.00 4.61
2829 3405 2.650322 GAAACACCAGAAACACTCCCA 58.350 47.619 0.00 0.00 0.00 4.37
2830 3406 1.602377 CGAAACACCAGAAACACTCCC 59.398 52.381 0.00 0.00 0.00 4.30
2831 3407 2.557317 TCGAAACACCAGAAACACTCC 58.443 47.619 0.00 0.00 0.00 3.85
2832 3408 3.543460 CGTTCGAAACACCAGAAACACTC 60.543 47.826 0.00 0.00 0.00 3.51
2833 3409 2.350498 CGTTCGAAACACCAGAAACACT 59.650 45.455 0.00 0.00 0.00 3.55
2834 3410 2.349275 TCGTTCGAAACACCAGAAACAC 59.651 45.455 0.00 0.00 0.00 3.32
2835 3411 2.605818 CTCGTTCGAAACACCAGAAACA 59.394 45.455 0.00 0.00 0.00 2.83
2836 3412 2.606272 ACTCGTTCGAAACACCAGAAAC 59.394 45.455 0.00 0.00 0.00 2.78
2837 3413 2.861935 GACTCGTTCGAAACACCAGAAA 59.138 45.455 0.00 0.00 0.00 2.52
2838 3414 2.466846 GACTCGTTCGAAACACCAGAA 58.533 47.619 0.00 0.00 0.00 3.02
2839 3415 2.129823 GACTCGTTCGAAACACCAGA 57.870 50.000 0.00 0.00 0.00 3.86
2850 3426 0.599204 TTGGCCAGTTCGACTCGTTC 60.599 55.000 5.11 0.00 0.00 3.95
2851 3427 0.179067 TTTGGCCAGTTCGACTCGTT 60.179 50.000 5.11 0.00 0.00 3.85
2852 3428 0.878961 GTTTGGCCAGTTCGACTCGT 60.879 55.000 5.11 0.00 0.00 4.18
2853 3429 1.566018 GGTTTGGCCAGTTCGACTCG 61.566 60.000 5.11 0.00 37.17 4.18
2854 3430 1.235281 GGGTTTGGCCAGTTCGACTC 61.235 60.000 5.11 0.00 39.65 3.36
2855 3431 1.228154 GGGTTTGGCCAGTTCGACT 60.228 57.895 5.11 0.00 39.65 4.18
2856 3432 2.265904 GGGGTTTGGCCAGTTCGAC 61.266 63.158 5.11 1.06 39.65 4.20
2857 3433 2.114411 GGGGTTTGGCCAGTTCGA 59.886 61.111 5.11 0.00 39.65 3.71
2858 3434 2.989253 GGGGGTTTGGCCAGTTCG 60.989 66.667 5.11 0.00 39.65 3.95
2859 3435 1.606601 GAGGGGGTTTGGCCAGTTC 60.607 63.158 5.11 0.00 39.65 3.01
2860 3436 0.774491 TAGAGGGGGTTTGGCCAGTT 60.774 55.000 5.11 0.00 39.65 3.16
2861 3437 1.151677 TAGAGGGGGTTTGGCCAGT 60.152 57.895 5.11 0.00 39.65 4.00
2862 3438 1.303282 GTAGAGGGGGTTTGGCCAG 59.697 63.158 5.11 0.00 39.65 4.85
2863 3439 2.598787 CGTAGAGGGGGTTTGGCCA 61.599 63.158 0.00 0.00 39.65 5.36
2864 3440 2.133359 AACGTAGAGGGGGTTTGGCC 62.133 60.000 0.00 0.00 0.00 5.36
2865 3441 0.958876 CAACGTAGAGGGGGTTTGGC 60.959 60.000 0.00 0.00 0.00 4.52
2866 3442 0.958876 GCAACGTAGAGGGGGTTTGG 60.959 60.000 0.00 0.00 0.00 3.28
2867 3443 1.296056 CGCAACGTAGAGGGGGTTTG 61.296 60.000 0.00 0.00 0.00 2.93
2868 3444 1.004200 CGCAACGTAGAGGGGGTTT 60.004 57.895 0.00 0.00 0.00 3.27
2869 3445 2.660802 CGCAACGTAGAGGGGGTT 59.339 61.111 0.00 0.00 0.00 4.11
2870 3446 4.078516 GCGCAACGTAGAGGGGGT 62.079 66.667 0.30 0.00 0.00 4.95
2871 3447 3.310860 AAGCGCAACGTAGAGGGGG 62.311 63.158 11.47 0.00 0.00 5.40
2872 3448 2.100631 CAAGCGCAACGTAGAGGGG 61.101 63.158 11.47 0.00 0.00 4.79
2873 3449 2.100631 CCAAGCGCAACGTAGAGGG 61.101 63.158 11.47 0.00 0.00 4.30
2874 3450 2.100631 CCCAAGCGCAACGTAGAGG 61.101 63.158 11.47 0.00 0.00 3.69
2875 3451 2.740714 GCCCAAGCGCAACGTAGAG 61.741 63.158 11.47 0.00 0.00 2.43
2876 3452 2.740826 GCCCAAGCGCAACGTAGA 60.741 61.111 11.47 0.00 0.00 2.59
2877 3453 3.799755 GGCCCAAGCGCAACGTAG 61.800 66.667 11.47 0.00 41.24 3.51
2878 3454 4.323477 AGGCCCAAGCGCAACGTA 62.323 61.111 11.47 0.00 41.24 3.57
2882 3458 3.808218 AAAGGAGGCCCAAGCGCAA 62.808 57.895 11.47 0.00 41.24 4.85
2883 3459 2.419011 TAAAAGGAGGCCCAAGCGCA 62.419 55.000 11.47 0.00 41.24 6.09
2884 3460 1.037579 ATAAAAGGAGGCCCAAGCGC 61.038 55.000 0.00 0.00 41.24 5.92
2885 3461 1.947456 GTATAAAAGGAGGCCCAAGCG 59.053 52.381 0.00 0.00 41.24 4.68
2886 3462 3.298686 AGTATAAAAGGAGGCCCAAGC 57.701 47.619 0.00 0.00 38.76 4.01
2887 3463 5.261216 TGAAAGTATAAAAGGAGGCCCAAG 58.739 41.667 0.00 0.00 33.88 3.61
2888 3464 5.263872 TGAAAGTATAAAAGGAGGCCCAA 57.736 39.130 0.00 0.00 33.88 4.12
2889 3465 4.938575 TGAAAGTATAAAAGGAGGCCCA 57.061 40.909 0.00 0.00 33.88 5.36
2890 3466 4.645136 CCTTGAAAGTATAAAAGGAGGCCC 59.355 45.833 0.00 0.00 41.49 5.80
2891 3467 4.645136 CCCTTGAAAGTATAAAAGGAGGCC 59.355 45.833 0.00 0.00 41.49 5.19
2892 3468 4.645136 CCCCTTGAAAGTATAAAAGGAGGC 59.355 45.833 1.88 0.00 41.49 4.70
2893 3469 5.827756 ACCCCTTGAAAGTATAAAAGGAGG 58.172 41.667 1.88 4.55 41.49 4.30
2894 3470 6.481643 TGACCCCTTGAAAGTATAAAAGGAG 58.518 40.000 1.88 0.00 41.49 3.69
2895 3471 6.457159 TGACCCCTTGAAAGTATAAAAGGA 57.543 37.500 1.88 0.00 41.49 3.36
2896 3472 6.038271 CGATGACCCCTTGAAAGTATAAAAGG 59.962 42.308 0.00 0.00 39.15 3.11
2897 3473 6.821665 TCGATGACCCCTTGAAAGTATAAAAG 59.178 38.462 0.00 0.00 0.00 2.27
2898 3474 6.596497 GTCGATGACCCCTTGAAAGTATAAAA 59.404 38.462 0.00 0.00 0.00 1.52
2899 3475 6.110707 GTCGATGACCCCTTGAAAGTATAAA 58.889 40.000 0.00 0.00 0.00 1.40
2900 3476 5.188163 TGTCGATGACCCCTTGAAAGTATAA 59.812 40.000 0.00 0.00 0.00 0.98
2901 3477 4.712829 TGTCGATGACCCCTTGAAAGTATA 59.287 41.667 0.00 0.00 0.00 1.47
2902 3478 3.517901 TGTCGATGACCCCTTGAAAGTAT 59.482 43.478 0.00 0.00 0.00 2.12
2903 3479 2.901192 TGTCGATGACCCCTTGAAAGTA 59.099 45.455 0.00 0.00 0.00 2.24
2904 3480 1.697432 TGTCGATGACCCCTTGAAAGT 59.303 47.619 0.00 0.00 0.00 2.66
2905 3481 2.350522 CTGTCGATGACCCCTTGAAAG 58.649 52.381 0.00 0.00 0.00 2.62
2906 3482 1.003118 CCTGTCGATGACCCCTTGAAA 59.997 52.381 0.00 0.00 0.00 2.69
2907 3483 0.613260 CCTGTCGATGACCCCTTGAA 59.387 55.000 0.00 0.00 0.00 2.69
2908 3484 0.544357 ACCTGTCGATGACCCCTTGA 60.544 55.000 0.00 0.00 0.00 3.02
2909 3485 0.391661 CACCTGTCGATGACCCCTTG 60.392 60.000 0.00 0.00 0.00 3.61
2910 3486 1.553690 CCACCTGTCGATGACCCCTT 61.554 60.000 0.00 0.00 0.00 3.95
2911 3487 1.990060 CCACCTGTCGATGACCCCT 60.990 63.158 0.00 0.00 0.00 4.79
2912 3488 2.584608 CCACCTGTCGATGACCCC 59.415 66.667 0.00 0.00 0.00 4.95
2913 3489 2.125106 GCCACCTGTCGATGACCC 60.125 66.667 0.00 0.00 0.00 4.46
2914 3490 1.003839 TTGCCACCTGTCGATGACC 60.004 57.895 0.00 0.00 0.00 4.02
2915 3491 1.626654 CGTTGCCACCTGTCGATGAC 61.627 60.000 0.00 0.00 0.00 3.06
2916 3492 1.374125 CGTTGCCACCTGTCGATGA 60.374 57.895 0.00 0.00 0.00 2.92
2917 3493 0.389296 TACGTTGCCACCTGTCGATG 60.389 55.000 0.00 0.00 0.00 3.84
2918 3494 0.108804 CTACGTTGCCACCTGTCGAT 60.109 55.000 0.00 0.00 0.00 3.59
2919 3495 1.174078 TCTACGTTGCCACCTGTCGA 61.174 55.000 0.00 0.00 0.00 4.20
2920 3496 1.007336 GTCTACGTTGCCACCTGTCG 61.007 60.000 0.00 0.00 0.00 4.35
2921 3497 0.317479 AGTCTACGTTGCCACCTGTC 59.683 55.000 0.00 0.00 0.00 3.51
2922 3498 1.544691 CTAGTCTACGTTGCCACCTGT 59.455 52.381 0.00 0.00 0.00 4.00
2923 3499 1.816835 TCTAGTCTACGTTGCCACCTG 59.183 52.381 0.00 0.00 0.00 4.00
2924 3500 2.211250 TCTAGTCTACGTTGCCACCT 57.789 50.000 0.00 0.00 0.00 4.00
2925 3501 2.416972 CCTTCTAGTCTACGTTGCCACC 60.417 54.545 0.00 0.00 0.00 4.61
2926 3502 2.416972 CCCTTCTAGTCTACGTTGCCAC 60.417 54.545 0.00 0.00 0.00 5.01
2927 3503 1.822990 CCCTTCTAGTCTACGTTGCCA 59.177 52.381 0.00 0.00 0.00 4.92
2928 3504 1.823610 ACCCTTCTAGTCTACGTTGCC 59.176 52.381 0.00 0.00 0.00 4.52
2929 3505 4.708726 TTACCCTTCTAGTCTACGTTGC 57.291 45.455 0.00 0.00 0.00 4.17
2930 3506 7.064253 CCATTTTTACCCTTCTAGTCTACGTTG 59.936 40.741 0.00 0.00 0.00 4.10
2931 3507 7.038799 TCCATTTTTACCCTTCTAGTCTACGTT 60.039 37.037 0.00 0.00 0.00 3.99
2932 3508 6.438425 TCCATTTTTACCCTTCTAGTCTACGT 59.562 38.462 0.00 0.00 0.00 3.57
2933 3509 6.870769 TCCATTTTTACCCTTCTAGTCTACG 58.129 40.000 0.00 0.00 0.00 3.51
2934 3510 9.511272 TTTTCCATTTTTACCCTTCTAGTCTAC 57.489 33.333 0.00 0.00 0.00 2.59
2935 3511 9.734984 CTTTTCCATTTTTACCCTTCTAGTCTA 57.265 33.333 0.00 0.00 0.00 2.59
2936 3512 7.670140 CCTTTTCCATTTTTACCCTTCTAGTCT 59.330 37.037 0.00 0.00 0.00 3.24
2937 3513 7.668469 TCCTTTTCCATTTTTACCCTTCTAGTC 59.332 37.037 0.00 0.00 0.00 2.59
2938 3514 7.532199 TCCTTTTCCATTTTTACCCTTCTAGT 58.468 34.615 0.00 0.00 0.00 2.57
2939 3515 8.470002 CATCCTTTTCCATTTTTACCCTTCTAG 58.530 37.037 0.00 0.00 0.00 2.43
2940 3516 7.093509 GCATCCTTTTCCATTTTTACCCTTCTA 60.094 37.037 0.00 0.00 0.00 2.10
2941 3517 6.295859 GCATCCTTTTCCATTTTTACCCTTCT 60.296 38.462 0.00 0.00 0.00 2.85
2942 3518 5.874810 GCATCCTTTTCCATTTTTACCCTTC 59.125 40.000 0.00 0.00 0.00 3.46
2943 3519 5.568624 CGCATCCTTTTCCATTTTTACCCTT 60.569 40.000 0.00 0.00 0.00 3.95
2944 3520 4.081697 CGCATCCTTTTCCATTTTTACCCT 60.082 41.667 0.00 0.00 0.00 4.34
2945 3521 4.180817 CGCATCCTTTTCCATTTTTACCC 58.819 43.478 0.00 0.00 0.00 3.69
2946 3522 4.180817 CCGCATCCTTTTCCATTTTTACC 58.819 43.478 0.00 0.00 0.00 2.85
2947 3523 4.816392 ACCGCATCCTTTTCCATTTTTAC 58.184 39.130 0.00 0.00 0.00 2.01
2948 3524 5.126384 CCTACCGCATCCTTTTCCATTTTTA 59.874 40.000 0.00 0.00 0.00 1.52
2949 3525 4.081697 CCTACCGCATCCTTTTCCATTTTT 60.082 41.667 0.00 0.00 0.00 1.94
2950 3526 3.447229 CCTACCGCATCCTTTTCCATTTT 59.553 43.478 0.00 0.00 0.00 1.82
2951 3527 3.023832 CCTACCGCATCCTTTTCCATTT 58.976 45.455 0.00 0.00 0.00 2.32
2952 3528 2.025321 ACCTACCGCATCCTTTTCCATT 60.025 45.455 0.00 0.00 0.00 3.16
2953 3529 1.564348 ACCTACCGCATCCTTTTCCAT 59.436 47.619 0.00 0.00 0.00 3.41
2954 3530 0.988832 ACCTACCGCATCCTTTTCCA 59.011 50.000 0.00 0.00 0.00 3.53
2955 3531 1.379527 CACCTACCGCATCCTTTTCC 58.620 55.000 0.00 0.00 0.00 3.13
2956 3532 0.733150 GCACCTACCGCATCCTTTTC 59.267 55.000 0.00 0.00 0.00 2.29
2957 3533 0.037590 TGCACCTACCGCATCCTTTT 59.962 50.000 0.00 0.00 33.55 2.27
2958 3534 0.392998 CTGCACCTACCGCATCCTTT 60.393 55.000 0.00 0.00 39.02 3.11
2959 3535 1.221840 CTGCACCTACCGCATCCTT 59.778 57.895 0.00 0.00 39.02 3.36
2960 3536 2.903357 CTGCACCTACCGCATCCT 59.097 61.111 0.00 0.00 39.02 3.24
2961 3537 2.028125 TAGCTGCACCTACCGCATCC 62.028 60.000 1.02 0.00 39.02 3.51
2962 3538 0.876342 GTAGCTGCACCTACCGCATC 60.876 60.000 7.83 0.00 39.02 3.91
2963 3539 1.144057 GTAGCTGCACCTACCGCAT 59.856 57.895 7.83 0.00 39.02 4.73
2964 3540 2.577059 GTAGCTGCACCTACCGCA 59.423 61.111 7.83 0.00 37.88 5.69
2965 3541 2.202892 GGTAGCTGCACCTACCGC 60.203 66.667 19.95 3.88 45.58 5.68
2977 3553 1.679680 TGTATCCACAGTAGCGGTAGC 59.320 52.381 0.00 0.00 45.58 3.58
2978 3554 3.627732 CTGTATCCACAGTAGCGGTAG 57.372 52.381 0.00 0.00 46.03 3.18
2988 3564 1.553248 GTAGGGTGCACTGTATCCACA 59.447 52.381 17.98 0.00 0.00 4.17
2989 3565 1.134491 GGTAGGGTGCACTGTATCCAC 60.134 57.143 17.98 9.35 0.00 4.02
2990 3566 1.200519 GGTAGGGTGCACTGTATCCA 58.799 55.000 17.98 0.00 0.00 3.41
2991 3567 1.497161 AGGTAGGGTGCACTGTATCC 58.503 55.000 17.98 8.97 0.00 2.59
2992 3568 3.705072 AGTTAGGTAGGGTGCACTGTATC 59.295 47.826 17.98 8.85 0.00 2.24
2993 3569 3.705072 GAGTTAGGTAGGGTGCACTGTAT 59.295 47.826 17.98 2.90 0.00 2.29
2994 3570 3.094572 GAGTTAGGTAGGGTGCACTGTA 58.905 50.000 17.98 5.69 0.00 2.74
2995 3571 1.900486 GAGTTAGGTAGGGTGCACTGT 59.100 52.381 17.98 6.77 0.00 3.55
2996 3572 2.093973 CAGAGTTAGGTAGGGTGCACTG 60.094 54.545 17.98 0.00 0.00 3.66
2997 3573 2.180276 CAGAGTTAGGTAGGGTGCACT 58.820 52.381 17.98 0.00 0.00 4.40
2998 3574 2.094130 GTCAGAGTTAGGTAGGGTGCAC 60.094 54.545 8.80 8.80 0.00 4.57
2999 3575 2.176889 GTCAGAGTTAGGTAGGGTGCA 58.823 52.381 0.00 0.00 0.00 4.57
3000 3576 1.134560 CGTCAGAGTTAGGTAGGGTGC 59.865 57.143 0.00 0.00 0.00 5.01
3001 3577 1.749634 CCGTCAGAGTTAGGTAGGGTG 59.250 57.143 0.00 0.00 0.00 4.61
3002 3578 1.959028 GCCGTCAGAGTTAGGTAGGGT 60.959 57.143 0.00 0.00 0.00 4.34
3003 3579 0.745468 GCCGTCAGAGTTAGGTAGGG 59.255 60.000 0.00 0.00 0.00 3.53
3004 3580 1.405821 CTGCCGTCAGAGTTAGGTAGG 59.594 57.143 0.00 0.00 42.95 3.18
3005 3581 1.405821 CCTGCCGTCAGAGTTAGGTAG 59.594 57.143 0.00 0.00 42.95 3.18
3006 3582 1.471119 CCTGCCGTCAGAGTTAGGTA 58.529 55.000 0.00 0.00 42.95 3.08
3007 3583 1.258445 CCCTGCCGTCAGAGTTAGGT 61.258 60.000 0.00 0.00 42.95 3.08
3008 3584 1.517832 CCCTGCCGTCAGAGTTAGG 59.482 63.158 0.00 0.00 42.95 2.69
3009 3585 0.970937 TCCCCTGCCGTCAGAGTTAG 60.971 60.000 0.00 0.00 42.95 2.34
3010 3586 1.077805 TCCCCTGCCGTCAGAGTTA 59.922 57.895 0.00 0.00 42.95 2.24
3011 3587 2.203788 TCCCCTGCCGTCAGAGTT 60.204 61.111 0.00 0.00 42.95 3.01
3012 3588 2.997897 GTCCCCTGCCGTCAGAGT 60.998 66.667 0.00 0.00 42.95 3.24
3013 3589 2.513026 CTTGTCCCCTGCCGTCAGAG 62.513 65.000 0.00 0.00 42.95 3.35
3014 3590 2.525629 TTGTCCCCTGCCGTCAGA 60.526 61.111 0.00 0.00 42.95 3.27
3015 3591 2.046892 CTTGTCCCCTGCCGTCAG 60.047 66.667 0.00 0.00 40.02 3.51
3016 3592 3.636231 CCTTGTCCCCTGCCGTCA 61.636 66.667 0.00 0.00 0.00 4.35
3017 3593 4.410400 CCCTTGTCCCCTGCCGTC 62.410 72.222 0.00 0.00 0.00 4.79
3020 3596 2.223464 TAATGCCCTTGTCCCCTGCC 62.223 60.000 0.00 0.00 0.00 4.85
3021 3597 1.306296 TAATGCCCTTGTCCCCTGC 59.694 57.895 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.