Multiple sequence alignment - TraesCS1A01G232800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G232800 chr1A 100.000 3143 0 0 1 3143 406177234 406174092 0.000000e+00 5805.0
1 TraesCS1A01G232800 chr1A 98.182 275 5 0 2201 2475 583816276 583816550 6.100000e-132 481.0
2 TraesCS1A01G232800 chr1A 97.436 273 7 0 2201 2473 521620226 521619954 1.710000e-127 466.0
3 TraesCS1A01G232800 chr1A 96.875 32 0 1 1 32 314619974 314619944 6.000000e-03 52.8
4 TraesCS1A01G232800 chr1A 94.286 35 0 2 3 36 489171457 489171424 6.000000e-03 52.8
5 TraesCS1A01G232800 chr1B 91.482 1444 61 14 761 2194 435163248 435161857 0.000000e+00 1929.0
6 TraesCS1A01G232800 chr1B 92.035 678 37 11 2473 3143 435161833 435161166 0.000000e+00 937.0
7 TraesCS1A01G232800 chr1B 84.323 421 37 18 32 443 435189210 435188810 4.920000e-103 385.0
8 TraesCS1A01G232800 chr1B 87.444 223 17 3 450 661 435175264 435175042 2.420000e-61 246.0
9 TraesCS1A01G232800 chr1B 100.000 70 0 0 660 729 435163317 435163248 2.540000e-26 130.0
10 TraesCS1A01G232800 chr1B 100.000 31 0 0 1 31 638977530 638977560 1.220000e-04 58.4
11 TraesCS1A01G232800 chr1D 90.453 1456 65 16 761 2194 322279959 322278556 0.000000e+00 1851.0
12 TraesCS1A01G232800 chr1D 92.094 683 40 6 2473 3143 322278532 322277852 0.000000e+00 950.0
13 TraesCS1A01G232800 chr1D 86.019 422 20 14 28 443 322281117 322280729 1.740000e-112 416.0
14 TraesCS1A01G232800 chr1D 92.096 291 12 3 450 729 322280249 322279959 1.760000e-107 399.0
15 TraesCS1A01G232800 chr2B 98.545 275 4 0 2201 2475 620862142 620862416 1.310000e-133 486.0
16 TraesCS1A01G232800 chr2B 97.091 275 8 0 2201 2475 164086348 164086622 6.140000e-127 464.0
17 TraesCS1A01G232800 chrUn 98.188 276 5 0 2201 2476 40187391 40187666 1.700000e-132 483.0
18 TraesCS1A01G232800 chrUn 100.000 28 0 0 2 29 465615790 465615763 6.000000e-03 52.8
19 TraesCS1A01G232800 chr5B 97.509 281 7 0 2193 2473 9012077 9012357 6.100000e-132 481.0
20 TraesCS1A01G232800 chr5B 100.000 30 0 0 1 30 336121733 336121762 4.380000e-04 56.5
21 TraesCS1A01G232800 chr5B 100.000 30 0 0 3 32 519003923 519003952 4.380000e-04 56.5
22 TraesCS1A01G232800 chr6A 97.834 277 6 0 2201 2477 50269837 50270113 2.190000e-131 479.0
23 TraesCS1A01G232800 chr3B 97.834 277 6 0 2201 2477 813141295 813141019 2.190000e-131 479.0
24 TraesCS1A01G232800 chr7A 96.727 275 9 0 2201 2475 19268819 19268545 2.860000e-125 459.0
25 TraesCS1A01G232800 chr3A 88.525 61 6 1 1315 1374 690194633 690194573 4.350000e-09 73.1
26 TraesCS1A01G232800 chr6B 100.000 30 0 0 1 30 20813114 20813143 4.380000e-04 56.5
27 TraesCS1A01G232800 chr6B 96.875 32 0 1 1 32 6052401 6052431 6.000000e-03 52.8
28 TraesCS1A01G232800 chr5A 94.118 34 2 0 3 36 11082904 11082871 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G232800 chr1A 406174092 406177234 3142 True 5805.000000 5805 100.000000 1 3143 1 chr1A.!!$R2 3142
1 TraesCS1A01G232800 chr1B 435161166 435163317 2151 True 998.666667 1929 94.505667 660 3143 3 chr1B.!!$R3 2483
2 TraesCS1A01G232800 chr1D 322277852 322281117 3265 True 904.000000 1851 90.165500 28 3143 4 chr1D.!!$R1 3115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 1236 0.032540 CACAGGTGGCCTTTCTTTGC 59.967 55.0 3.32 0.0 0.00 3.68 F
977 1467 0.036294 CTCCACCTTCCTTCGTTCCC 60.036 60.0 0.00 0.0 0.00 3.97 F
1217 1707 0.390860 GTGTGCTGTCACCTCAGTCT 59.609 55.0 0.00 0.0 42.46 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 2161 0.889638 TCTCCGTGTCGTCTTGAGCT 60.890 55.000 0.00 0.0 0.0 4.09 R
2132 2643 1.153489 CAGCTCCCTCACATCACGG 60.153 63.158 0.00 0.0 0.0 4.94 R
2983 3513 0.593128 AGCAACATGTTCACTTCGCC 59.407 50.000 8.48 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.293867 CAGAAGCTATACATAGTCTAACACTCC 58.706 40.741 0.00 0.00 36.43 3.85
43 44 5.641209 GTCTAACACTCCTAGACTAACACGA 59.359 44.000 0.00 0.00 41.34 4.35
84 86 2.432628 GCCACCTTCCGTCGACAG 60.433 66.667 17.16 3.99 0.00 3.51
89 91 1.179814 ACCTTCCGTCGACAGAAGCT 61.180 55.000 28.51 17.19 38.53 3.74
98 100 1.208614 GACAGAAGCTTTGCCGCTG 59.791 57.895 0.00 5.43 40.79 5.18
119 125 1.080705 GGTCGACAGGGAGACGTTG 60.081 63.158 18.91 0.00 38.20 4.10
120 126 1.521450 GGTCGACAGGGAGACGTTGA 61.521 60.000 18.91 0.00 38.20 3.18
121 127 0.526662 GTCGACAGGGAGACGTTGAT 59.473 55.000 11.55 0.00 36.76 2.57
122 128 0.809385 TCGACAGGGAGACGTTGATC 59.191 55.000 0.00 0.00 36.76 2.92
130 136 2.260481 GGAGACGTTGATCGAAGTTCC 58.740 52.381 2.86 8.26 42.86 3.62
186 192 1.227263 GCTCCCGCGCTTCATCTTA 60.227 57.895 5.56 0.00 0.00 2.10
187 193 1.218230 GCTCCCGCGCTTCATCTTAG 61.218 60.000 5.56 0.00 0.00 2.18
188 194 0.103208 CTCCCGCGCTTCATCTTAGT 59.897 55.000 5.56 0.00 0.00 2.24
189 195 0.179111 TCCCGCGCTTCATCTTAGTG 60.179 55.000 5.56 0.00 0.00 2.74
190 196 0.179111 CCCGCGCTTCATCTTAGTGA 60.179 55.000 5.56 0.00 0.00 3.41
191 197 1.539065 CCCGCGCTTCATCTTAGTGAT 60.539 52.381 5.56 0.00 35.40 3.06
192 198 2.205074 CCGCGCTTCATCTTAGTGATT 58.795 47.619 5.56 0.00 32.05 2.57
193 199 2.033407 CCGCGCTTCATCTTAGTGATTG 60.033 50.000 5.56 0.00 32.05 2.67
194 200 2.033407 CGCGCTTCATCTTAGTGATTGG 60.033 50.000 5.56 0.00 32.05 3.16
195 201 2.289002 GCGCTTCATCTTAGTGATTGGG 59.711 50.000 0.00 0.00 32.05 4.12
196 202 2.874701 CGCTTCATCTTAGTGATTGGGG 59.125 50.000 0.00 0.00 32.05 4.96
197 203 3.432186 CGCTTCATCTTAGTGATTGGGGA 60.432 47.826 0.00 0.00 32.05 4.81
198 204 3.879892 GCTTCATCTTAGTGATTGGGGAC 59.120 47.826 0.00 0.00 32.05 4.46
199 205 4.626287 GCTTCATCTTAGTGATTGGGGACA 60.626 45.833 0.00 0.00 39.83 4.02
210 216 3.637273 GGGGACAACTCGCCACCT 61.637 66.667 0.00 0.00 46.73 4.00
211 217 2.047179 GGGACAACTCGCCACCTC 60.047 66.667 0.00 0.00 0.00 3.85
227 233 2.603473 TCGTCCTCCAGGGGTGTG 60.603 66.667 0.00 0.00 35.41 3.82
229 235 1.608336 CGTCCTCCAGGGGTGTGTA 60.608 63.158 0.00 0.00 35.41 2.90
230 236 1.605058 CGTCCTCCAGGGGTGTGTAG 61.605 65.000 0.00 0.00 35.41 2.74
231 237 1.612442 TCCTCCAGGGGTGTGTAGC 60.612 63.158 0.00 0.00 35.41 3.58
232 238 1.918293 CCTCCAGGGGTGTGTAGCA 60.918 63.158 0.00 0.00 0.00 3.49
233 239 1.599047 CTCCAGGGGTGTGTAGCAG 59.401 63.158 0.00 0.00 0.00 4.24
235 241 2.596851 CCAGGGGTGTGTAGCAGCT 61.597 63.158 0.00 0.00 44.46 4.24
244 250 3.450115 GTAGCAGCTCCGTCGGGT 61.450 66.667 12.29 0.00 33.83 5.28
301 307 2.509336 GCTCCCGTCACCATGTCG 60.509 66.667 0.00 0.00 0.00 4.35
314 320 3.411418 ATGTCGCCGAGCTACCACG 62.411 63.158 0.00 0.00 0.00 4.94
365 371 0.320073 CACAGCATGCACCCCAAAAG 60.320 55.000 21.98 0.36 42.53 2.27
372 378 1.299850 GCACCCCAAAAGCACGAAC 60.300 57.895 0.00 0.00 0.00 3.95
381 387 0.657840 AAAGCACGAACAGAGCACAC 59.342 50.000 0.00 0.00 38.98 3.82
412 418 1.012343 CACACAAGCACACGTCACG 60.012 57.895 0.00 0.00 0.00 4.35
535 1014 4.680237 TGCGTGCCTGGTTCGAGG 62.680 66.667 14.51 0.00 36.03 4.63
543 1022 1.333636 CCTGGTTCGAGGCCTGATCT 61.334 60.000 12.00 0.00 0.00 2.75
544 1023 0.179089 CTGGTTCGAGGCCTGATCTG 60.179 60.000 12.00 0.00 0.00 2.90
729 1219 1.669211 GGAGGACTAGTCAACGCACAC 60.669 57.143 23.91 4.43 0.00 3.82
730 1220 1.000607 GAGGACTAGTCAACGCACACA 60.001 52.381 23.91 0.00 0.00 3.72
731 1221 1.000163 AGGACTAGTCAACGCACACAG 60.000 52.381 23.91 0.00 0.00 3.66
732 1222 1.419374 GACTAGTCAACGCACACAGG 58.581 55.000 18.20 0.00 0.00 4.00
733 1223 0.750850 ACTAGTCAACGCACACAGGT 59.249 50.000 0.00 0.00 0.00 4.00
735 1225 0.249699 TAGTCAACGCACACAGGTGG 60.250 55.000 4.24 0.00 45.38 4.61
736 1226 2.899838 TCAACGCACACAGGTGGC 60.900 61.111 4.24 3.92 45.38 5.01
737 1227 3.964875 CAACGCACACAGGTGGCC 61.965 66.667 0.00 0.00 45.38 5.36
738 1228 4.189580 AACGCACACAGGTGGCCT 62.190 61.111 3.32 0.00 45.38 5.19
739 1229 3.714487 AACGCACACAGGTGGCCTT 62.714 57.895 3.32 0.00 45.38 4.35
740 1230 2.906897 CGCACACAGGTGGCCTTT 60.907 61.111 3.32 0.00 45.38 3.11
741 1231 2.908073 CGCACACAGGTGGCCTTTC 61.908 63.158 3.32 0.00 45.38 2.62
742 1232 1.529244 GCACACAGGTGGCCTTTCT 60.529 57.895 3.32 0.00 45.38 2.52
743 1233 1.109323 GCACACAGGTGGCCTTTCTT 61.109 55.000 3.32 0.00 45.38 2.52
744 1234 1.402787 CACACAGGTGGCCTTTCTTT 58.597 50.000 3.32 0.00 41.45 2.52
745 1235 1.067516 CACACAGGTGGCCTTTCTTTG 59.932 52.381 3.32 4.81 41.45 2.77
746 1236 0.032540 CACAGGTGGCCTTTCTTTGC 59.967 55.000 3.32 0.00 0.00 3.68
754 1244 2.428888 GCCTTTCTTTGCCAAGTCAG 57.571 50.000 0.00 0.00 0.00 3.51
755 1245 1.683385 GCCTTTCTTTGCCAAGTCAGT 59.317 47.619 0.00 0.00 0.00 3.41
756 1246 2.101415 GCCTTTCTTTGCCAAGTCAGTT 59.899 45.455 0.00 0.00 0.00 3.16
757 1247 3.796844 GCCTTTCTTTGCCAAGTCAGTTC 60.797 47.826 0.00 0.00 0.00 3.01
758 1248 3.243535 CCTTTCTTTGCCAAGTCAGTTCC 60.244 47.826 0.00 0.00 0.00 3.62
759 1249 3.297134 TTCTTTGCCAAGTCAGTTCCT 57.703 42.857 0.00 0.00 0.00 3.36
760 1250 4.431416 TTCTTTGCCAAGTCAGTTCCTA 57.569 40.909 0.00 0.00 0.00 2.94
804 1294 1.697432 TGTGATGGGTTCTTCCGTTCT 59.303 47.619 0.00 0.00 37.00 3.01
812 1302 3.243737 GGGTTCTTCCGTTCTTGCATTTT 60.244 43.478 0.00 0.00 37.00 1.82
824 1314 4.334552 TCTTGCATTTTACTCCATCTGCA 58.665 39.130 0.00 0.00 37.80 4.41
825 1315 4.766373 TCTTGCATTTTACTCCATCTGCAA 59.234 37.500 7.45 7.45 44.61 4.08
826 1316 4.439305 TGCATTTTACTCCATCTGCAAC 57.561 40.909 0.00 0.00 36.75 4.17
827 1317 4.081406 TGCATTTTACTCCATCTGCAACT 58.919 39.130 0.00 0.00 36.75 3.16
828 1318 4.082625 TGCATTTTACTCCATCTGCAACTG 60.083 41.667 0.00 0.00 36.75 3.16
829 1319 4.418392 CATTTTACTCCATCTGCAACTGC 58.582 43.478 0.00 0.00 42.50 4.40
870 1360 1.887797 ATATCTCCCGAACCCAACCA 58.112 50.000 0.00 0.00 0.00 3.67
873 1363 1.302511 CTCCCGAACCCAACCACAG 60.303 63.158 0.00 0.00 0.00 3.66
874 1364 2.983592 CCCGAACCCAACCACAGC 60.984 66.667 0.00 0.00 0.00 4.40
875 1365 3.353836 CCGAACCCAACCACAGCG 61.354 66.667 0.00 0.00 0.00 5.18
899 1389 1.135721 GCAGCATCAATCAAACCCTCC 59.864 52.381 0.00 0.00 0.00 4.30
900 1390 2.731572 CAGCATCAATCAAACCCTCCT 58.268 47.619 0.00 0.00 0.00 3.69
901 1391 2.686915 CAGCATCAATCAAACCCTCCTC 59.313 50.000 0.00 0.00 0.00 3.71
902 1392 2.309755 AGCATCAATCAAACCCTCCTCA 59.690 45.455 0.00 0.00 0.00 3.86
903 1393 3.091545 GCATCAATCAAACCCTCCTCAA 58.908 45.455 0.00 0.00 0.00 3.02
904 1394 3.129988 GCATCAATCAAACCCTCCTCAAG 59.870 47.826 0.00 0.00 0.00 3.02
905 1395 3.439857 TCAATCAAACCCTCCTCAAGG 57.560 47.619 0.00 0.00 45.77 3.61
906 1396 2.716424 TCAATCAAACCCTCCTCAAGGT 59.284 45.455 0.00 0.00 44.56 3.50
907 1397 2.821969 CAATCAAACCCTCCTCAAGGTG 59.178 50.000 0.00 0.00 44.56 4.00
908 1398 0.771127 TCAAACCCTCCTCAAGGTGG 59.229 55.000 9.74 9.74 44.56 4.61
934 1424 2.046700 TCCCAACAATCCGGCGTC 60.047 61.111 6.01 0.00 0.00 5.19
954 1444 1.557371 CACTTCCCCTTTCTCCCTCTC 59.443 57.143 0.00 0.00 0.00 3.20
973 1463 1.918800 CCCCTCCACCTTCCTTCGT 60.919 63.158 0.00 0.00 0.00 3.85
977 1467 0.036294 CTCCACCTTCCTTCGTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
1071 1561 2.330372 ACTCTCGCTCGCCGTGTTA 61.330 57.895 0.00 0.00 38.35 2.41
1072 1562 1.064296 CTCTCGCTCGCCGTGTTAT 59.936 57.895 0.00 0.00 38.35 1.89
1073 1563 0.525668 CTCTCGCTCGCCGTGTTATT 60.526 55.000 0.00 0.00 38.35 1.40
1074 1564 0.734309 TCTCGCTCGCCGTGTTATTA 59.266 50.000 0.00 0.00 38.35 0.98
1094 1584 8.844244 GTTATTATTACTCGAGTCTTACCCTCA 58.156 37.037 23.89 0.00 0.00 3.86
1095 1585 9.584008 TTATTATTACTCGAGTCTTACCCTCAT 57.416 33.333 23.89 7.52 0.00 2.90
1188 1678 1.141657 AGGTGAAGAAAGTGCTGCAGA 59.858 47.619 20.43 0.00 0.00 4.26
1203 1693 2.125912 AGAGCGTCGATGGTGTGC 60.126 61.111 15.18 0.00 0.00 4.57
1204 1694 2.125912 GAGCGTCGATGGTGTGCT 60.126 61.111 15.18 4.54 38.89 4.40
1208 1698 1.372872 CGTCGATGGTGTGCTGTCA 60.373 57.895 0.00 0.00 0.00 3.58
1209 1699 1.617755 CGTCGATGGTGTGCTGTCAC 61.618 60.000 0.00 0.00 43.40 3.67
1216 1706 2.906047 GTGTGCTGTCACCTCAGTC 58.094 57.895 0.00 0.00 42.46 3.51
1217 1707 0.390860 GTGTGCTGTCACCTCAGTCT 59.609 55.000 0.00 0.00 42.46 3.24
1218 1708 1.613925 GTGTGCTGTCACCTCAGTCTA 59.386 52.381 0.00 0.00 42.46 2.59
1219 1709 1.889170 TGTGCTGTCACCTCAGTCTAG 59.111 52.381 0.00 0.00 42.46 2.43
1220 1710 1.889829 GTGCTGTCACCTCAGTCTAGT 59.110 52.381 0.00 0.00 37.24 2.57
1221 1711 2.094957 GTGCTGTCACCTCAGTCTAGTC 60.095 54.545 0.00 0.00 37.24 2.59
1222 1712 2.224892 TGCTGTCACCTCAGTCTAGTCT 60.225 50.000 0.00 0.00 37.70 3.24
1223 1713 3.009143 TGCTGTCACCTCAGTCTAGTCTA 59.991 47.826 0.00 0.00 37.70 2.59
1224 1714 4.204012 GCTGTCACCTCAGTCTAGTCTAT 58.796 47.826 0.00 0.00 37.70 1.98
1225 1715 4.274950 GCTGTCACCTCAGTCTAGTCTATC 59.725 50.000 0.00 0.00 37.70 2.08
1226 1716 5.680619 CTGTCACCTCAGTCTAGTCTATCT 58.319 45.833 0.00 0.00 0.00 1.98
1227 1717 6.686885 GCTGTCACCTCAGTCTAGTCTATCTA 60.687 46.154 0.00 0.00 37.70 1.98
1257 1750 7.805071 CCAACATTTTCACTATGTCTTCACTTC 59.195 37.037 0.00 0.00 35.26 3.01
1262 1755 6.419484 TTCACTATGTCTTCACTTCTCCAA 57.581 37.500 0.00 0.00 0.00 3.53
1263 1756 6.611613 TCACTATGTCTTCACTTCTCCAAT 57.388 37.500 0.00 0.00 0.00 3.16
1285 1778 5.726980 TTATTTTGCTTGCTCCTGTGAAT 57.273 34.783 0.00 0.00 0.00 2.57
1322 1815 5.299279 TCATTCCATAGATTCGCCTTTTTCC 59.701 40.000 0.00 0.00 0.00 3.13
1374 1867 1.507141 GGAGCAACAAGGTGACGGTG 61.507 60.000 0.00 0.00 0.00 4.94
1437 1930 2.436646 CGCAGGTCGGGCAAGAAT 60.437 61.111 0.00 0.00 33.78 2.40
1504 2015 1.270147 CCGGAGAAACCAAGAACGACT 60.270 52.381 0.00 0.00 38.90 4.18
1677 2188 2.022129 CGACACGGAGAGCACCAAC 61.022 63.158 0.00 0.00 0.00 3.77
1848 2359 2.985847 GACCAAGGCAGCCACACC 60.986 66.667 15.80 0.00 0.00 4.16
2029 2540 4.373116 CGTACCCACCGTGCTGCT 62.373 66.667 0.00 0.00 0.00 4.24
2132 2643 0.242017 GACAATGCCAACTCCTGCAC 59.758 55.000 0.00 0.00 40.88 4.57
2200 2721 6.030849 CCGTCAAGTTAGTTGAGTCTATCTG 58.969 44.000 2.32 0.00 46.18 2.90
2201 2722 6.030849 CGTCAAGTTAGTTGAGTCTATCTGG 58.969 44.000 2.32 0.00 46.18 3.86
2203 2724 5.105310 TCAAGTTAGTTGAGTCTATCTGGGC 60.105 44.000 0.00 0.00 40.45 5.36
2206 2727 3.834489 AGTTGAGTCTATCTGGGCATG 57.166 47.619 0.00 0.00 0.00 4.06
2207 2728 3.110705 AGTTGAGTCTATCTGGGCATGT 58.889 45.455 0.00 0.00 0.00 3.21
2208 2729 4.290093 AGTTGAGTCTATCTGGGCATGTA 58.710 43.478 0.00 0.00 0.00 2.29
2209 2730 4.100189 AGTTGAGTCTATCTGGGCATGTAC 59.900 45.833 0.00 0.00 0.00 2.90
2210 2731 3.642141 TGAGTCTATCTGGGCATGTACA 58.358 45.455 0.00 0.00 0.00 2.90
2211 2732 4.030216 TGAGTCTATCTGGGCATGTACAA 58.970 43.478 0.00 0.00 0.00 2.41
2212 2733 4.655649 TGAGTCTATCTGGGCATGTACAAT 59.344 41.667 0.00 0.00 0.00 2.71
2213 2734 4.965814 AGTCTATCTGGGCATGTACAATG 58.034 43.478 0.00 0.12 0.00 2.82
2214 2735 4.655649 AGTCTATCTGGGCATGTACAATGA 59.344 41.667 0.00 0.00 0.00 2.57
2215 2736 5.309020 AGTCTATCTGGGCATGTACAATGAT 59.691 40.000 0.00 0.84 0.00 2.45
2216 2737 5.410746 GTCTATCTGGGCATGTACAATGATG 59.589 44.000 0.00 0.00 0.00 3.07
2217 2738 2.300433 TCTGGGCATGTACAATGATGC 58.700 47.619 10.12 10.12 43.60 3.91
2218 2739 2.092267 TCTGGGCATGTACAATGATGCT 60.092 45.455 16.47 0.00 43.77 3.79
2219 2740 3.136260 TCTGGGCATGTACAATGATGCTA 59.864 43.478 16.47 7.49 43.77 3.49
2220 2741 4.077108 CTGGGCATGTACAATGATGCTAT 58.923 43.478 16.47 0.00 43.77 2.97
2221 2742 4.074259 TGGGCATGTACAATGATGCTATC 58.926 43.478 16.47 8.95 43.77 2.08
2222 2743 4.202493 TGGGCATGTACAATGATGCTATCT 60.202 41.667 16.47 0.00 43.77 1.98
2223 2744 4.763793 GGGCATGTACAATGATGCTATCTT 59.236 41.667 16.47 0.00 43.77 2.40
2224 2745 5.939883 GGGCATGTACAATGATGCTATCTTA 59.060 40.000 16.47 0.00 43.77 2.10
2225 2746 6.093219 GGGCATGTACAATGATGCTATCTTAG 59.907 42.308 16.47 0.00 43.77 2.18
2226 2747 6.875726 GGCATGTACAATGATGCTATCTTAGA 59.124 38.462 16.47 0.00 43.77 2.10
2227 2748 7.388776 GGCATGTACAATGATGCTATCTTAGAA 59.611 37.037 16.47 0.00 43.77 2.10
2228 2749 8.441608 GCATGTACAATGATGCTATCTTAGAAG 58.558 37.037 11.12 0.00 41.52 2.85
2229 2750 9.486497 CATGTACAATGATGCTATCTTAGAAGT 57.514 33.333 0.00 0.00 0.00 3.01
2230 2751 8.877808 TGTACAATGATGCTATCTTAGAAGTG 57.122 34.615 0.00 0.00 0.00 3.16
2231 2752 8.478066 TGTACAATGATGCTATCTTAGAAGTGT 58.522 33.333 0.00 0.00 0.00 3.55
2232 2753 8.973378 GTACAATGATGCTATCTTAGAAGTGTC 58.027 37.037 0.00 0.00 0.00 3.67
2233 2754 7.559486 ACAATGATGCTATCTTAGAAGTGTCA 58.441 34.615 0.00 0.00 0.00 3.58
2234 2755 7.493971 ACAATGATGCTATCTTAGAAGTGTCAC 59.506 37.037 0.00 0.00 0.00 3.67
2235 2756 5.582550 TGATGCTATCTTAGAAGTGTCACG 58.417 41.667 0.00 0.00 0.00 4.35
2236 2757 5.125578 TGATGCTATCTTAGAAGTGTCACGT 59.874 40.000 0.00 0.00 0.00 4.49
2237 2758 6.317893 TGATGCTATCTTAGAAGTGTCACGTA 59.682 38.462 0.00 0.00 0.00 3.57
2238 2759 6.120378 TGCTATCTTAGAAGTGTCACGTAG 57.880 41.667 0.00 0.00 0.00 3.51
2239 2760 5.066117 TGCTATCTTAGAAGTGTCACGTAGG 59.934 44.000 0.00 0.00 0.00 3.18
2240 2761 5.296283 GCTATCTTAGAAGTGTCACGTAGGA 59.704 44.000 0.00 0.00 0.00 2.94
2241 2762 6.016943 GCTATCTTAGAAGTGTCACGTAGGAT 60.017 42.308 0.00 5.40 0.00 3.24
2242 2763 7.172875 GCTATCTTAGAAGTGTCACGTAGGATA 59.827 40.741 0.00 6.15 0.00 2.59
2243 2764 7.876936 ATCTTAGAAGTGTCACGTAGGATAA 57.123 36.000 0.00 0.00 0.00 1.75
2244 2765 7.692460 TCTTAGAAGTGTCACGTAGGATAAA 57.308 36.000 0.00 0.00 0.00 1.40
2245 2766 8.289939 TCTTAGAAGTGTCACGTAGGATAAAT 57.710 34.615 0.00 0.00 0.00 1.40
2246 2767 8.188799 TCTTAGAAGTGTCACGTAGGATAAATG 58.811 37.037 0.00 0.00 0.00 2.32
2247 2768 5.661458 AGAAGTGTCACGTAGGATAAATGG 58.339 41.667 0.00 0.00 0.00 3.16
2248 2769 5.187186 AGAAGTGTCACGTAGGATAAATGGT 59.813 40.000 0.00 0.00 0.00 3.55
2249 2770 4.755411 AGTGTCACGTAGGATAAATGGTG 58.245 43.478 0.00 0.00 0.00 4.17
2250 2771 4.464951 AGTGTCACGTAGGATAAATGGTGA 59.535 41.667 0.00 0.00 32.51 4.02
2251 2772 4.804139 GTGTCACGTAGGATAAATGGTGAG 59.196 45.833 0.00 0.00 35.34 3.51
2252 2773 4.142026 TGTCACGTAGGATAAATGGTGAGG 60.142 45.833 0.00 0.00 35.34 3.86
2253 2774 4.028131 TCACGTAGGATAAATGGTGAGGT 58.972 43.478 0.00 0.00 31.45 3.85
2254 2775 4.119862 CACGTAGGATAAATGGTGAGGTG 58.880 47.826 0.00 0.00 0.00 4.00
2255 2776 4.028131 ACGTAGGATAAATGGTGAGGTGA 58.972 43.478 0.00 0.00 0.00 4.02
2256 2777 4.468510 ACGTAGGATAAATGGTGAGGTGAA 59.531 41.667 0.00 0.00 0.00 3.18
2257 2778 5.050490 CGTAGGATAAATGGTGAGGTGAAG 58.950 45.833 0.00 0.00 0.00 3.02
2258 2779 4.510167 AGGATAAATGGTGAGGTGAAGG 57.490 45.455 0.00 0.00 0.00 3.46
2259 2780 4.111577 AGGATAAATGGTGAGGTGAAGGA 58.888 43.478 0.00 0.00 0.00 3.36
2260 2781 4.164988 AGGATAAATGGTGAGGTGAAGGAG 59.835 45.833 0.00 0.00 0.00 3.69
2261 2782 4.164221 GGATAAATGGTGAGGTGAAGGAGA 59.836 45.833 0.00 0.00 0.00 3.71
2262 2783 3.710209 AAATGGTGAGGTGAAGGAGAG 57.290 47.619 0.00 0.00 0.00 3.20
2263 2784 2.630889 ATGGTGAGGTGAAGGAGAGA 57.369 50.000 0.00 0.00 0.00 3.10
2264 2785 2.398754 TGGTGAGGTGAAGGAGAGAA 57.601 50.000 0.00 0.00 0.00 2.87
2265 2786 2.689658 TGGTGAGGTGAAGGAGAGAAA 58.310 47.619 0.00 0.00 0.00 2.52
2266 2787 3.045634 TGGTGAGGTGAAGGAGAGAAAA 58.954 45.455 0.00 0.00 0.00 2.29
2267 2788 3.181454 TGGTGAGGTGAAGGAGAGAAAAC 60.181 47.826 0.00 0.00 0.00 2.43
2268 2789 3.071747 GGTGAGGTGAAGGAGAGAAAACT 59.928 47.826 0.00 0.00 0.00 2.66
2269 2790 4.311606 GTGAGGTGAAGGAGAGAAAACTC 58.688 47.826 0.00 0.00 36.31 3.01
2270 2791 3.967326 TGAGGTGAAGGAGAGAAAACTCA 59.033 43.478 0.00 0.00 38.51 3.41
2271 2792 4.594920 TGAGGTGAAGGAGAGAAAACTCAT 59.405 41.667 0.00 0.00 38.51 2.90
2272 2793 5.780282 TGAGGTGAAGGAGAGAAAACTCATA 59.220 40.000 0.00 0.00 38.51 2.15
2273 2794 6.270000 TGAGGTGAAGGAGAGAAAACTCATAA 59.730 38.462 0.00 0.00 38.51 1.90
2274 2795 6.706295 AGGTGAAGGAGAGAAAACTCATAAG 58.294 40.000 0.00 0.00 38.51 1.73
2275 2796 6.498651 AGGTGAAGGAGAGAAAACTCATAAGA 59.501 38.462 0.00 0.00 38.51 2.10
2276 2797 7.016661 AGGTGAAGGAGAGAAAACTCATAAGAA 59.983 37.037 0.00 0.00 38.51 2.52
2277 2798 7.661847 GGTGAAGGAGAGAAAACTCATAAGAAA 59.338 37.037 0.00 0.00 38.51 2.52
2278 2799 9.057089 GTGAAGGAGAGAAAACTCATAAGAAAA 57.943 33.333 0.00 0.00 38.51 2.29
2279 2800 9.277783 TGAAGGAGAGAAAACTCATAAGAAAAG 57.722 33.333 0.00 0.00 38.51 2.27
2280 2801 8.628630 AAGGAGAGAAAACTCATAAGAAAAGG 57.371 34.615 0.00 0.00 38.51 3.11
2281 2802 6.657117 AGGAGAGAAAACTCATAAGAAAAGGC 59.343 38.462 0.00 0.00 38.51 4.35
2282 2803 6.657117 GGAGAGAAAACTCATAAGAAAAGGCT 59.343 38.462 0.00 0.00 38.51 4.58
2283 2804 7.175816 GGAGAGAAAACTCATAAGAAAAGGCTT 59.824 37.037 0.00 0.00 38.51 4.35
2284 2805 7.880105 AGAGAAAACTCATAAGAAAAGGCTTG 58.120 34.615 0.00 0.00 0.00 4.01
2285 2806 7.503902 AGAGAAAACTCATAAGAAAAGGCTTGT 59.496 33.333 0.00 0.00 0.00 3.16
2286 2807 7.652727 AGAAAACTCATAAGAAAAGGCTTGTC 58.347 34.615 9.51 9.51 0.00 3.18
2287 2808 7.503902 AGAAAACTCATAAGAAAAGGCTTGTCT 59.496 33.333 14.33 14.33 0.00 3.41
2288 2809 7.588497 AAACTCATAAGAAAAGGCTTGTCTT 57.412 32.000 30.04 30.04 35.77 3.01
2289 2810 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
2290 2811 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
2291 2812 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
2292 2813 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
2293 2814 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
2294 2815 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
2295 2816 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
2296 2817 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
2297 2818 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
2298 2819 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
2299 2820 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
2300 2821 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
2301 2822 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
2302 2823 9.746457 AAAGGCTTGTCTTCTCTTATTTAAGAT 57.254 29.630 0.00 0.00 41.12 2.40
2334 2855 7.551035 GAGATGATCTCTTAGCACAATTTGT 57.449 36.000 14.98 0.00 40.30 2.83
2335 2856 7.551035 AGATGATCTCTTAGCACAATTTGTC 57.449 36.000 0.00 0.00 0.00 3.18
2336 2857 7.337167 AGATGATCTCTTAGCACAATTTGTCT 58.663 34.615 0.00 3.34 0.00 3.41
2337 2858 6.974932 TGATCTCTTAGCACAATTTGTCTC 57.025 37.500 0.00 0.00 0.00 3.36
2338 2859 6.466812 TGATCTCTTAGCACAATTTGTCTCA 58.533 36.000 0.00 0.00 0.00 3.27
2339 2860 6.369890 TGATCTCTTAGCACAATTTGTCTCAC 59.630 38.462 0.00 0.00 0.00 3.51
2340 2861 4.997395 TCTCTTAGCACAATTTGTCTCACC 59.003 41.667 0.00 0.00 0.00 4.02
2341 2862 4.713553 TCTTAGCACAATTTGTCTCACCA 58.286 39.130 0.00 0.00 0.00 4.17
2342 2863 5.316167 TCTTAGCACAATTTGTCTCACCAT 58.684 37.500 0.00 0.00 0.00 3.55
2343 2864 6.472016 TCTTAGCACAATTTGTCTCACCATA 58.528 36.000 0.00 0.00 0.00 2.74
2344 2865 7.112122 TCTTAGCACAATTTGTCTCACCATAT 58.888 34.615 0.00 0.00 0.00 1.78
2345 2866 7.611467 TCTTAGCACAATTTGTCTCACCATATT 59.389 33.333 0.00 0.00 0.00 1.28
2346 2867 6.594788 AGCACAATTTGTCTCACCATATTT 57.405 33.333 0.00 0.00 0.00 1.40
2347 2868 6.996509 AGCACAATTTGTCTCACCATATTTT 58.003 32.000 0.00 0.00 0.00 1.82
2348 2869 8.121305 AGCACAATTTGTCTCACCATATTTTA 57.879 30.769 0.00 0.00 0.00 1.52
2349 2870 8.584157 AGCACAATTTGTCTCACCATATTTTAA 58.416 29.630 0.00 0.00 0.00 1.52
2350 2871 8.863049 GCACAATTTGTCTCACCATATTTTAAG 58.137 33.333 0.00 0.00 0.00 1.85
2351 2872 9.357652 CACAATTTGTCTCACCATATTTTAAGG 57.642 33.333 0.00 0.00 0.00 2.69
2352 2873 9.308000 ACAATTTGTCTCACCATATTTTAAGGA 57.692 29.630 0.00 0.00 0.00 3.36
2390 2911 8.736097 TGAAGATAAGGCTAAGATATAACCCA 57.264 34.615 0.00 0.00 0.00 4.51
2391 2912 9.338968 TGAAGATAAGGCTAAGATATAACCCAT 57.661 33.333 0.00 0.00 0.00 4.00
2393 2914 9.965902 AAGATAAGGCTAAGATATAACCCATTG 57.034 33.333 0.00 0.00 0.00 2.82
2394 2915 9.117223 AGATAAGGCTAAGATATAACCCATTGT 57.883 33.333 0.00 0.00 0.00 2.71
2397 2918 8.506196 AAGGCTAAGATATAACCCATTGTAGA 57.494 34.615 0.00 0.00 0.00 2.59
2398 2919 7.908453 AGGCTAAGATATAACCCATTGTAGAC 58.092 38.462 0.00 0.00 0.00 2.59
2399 2920 7.512746 AGGCTAAGATATAACCCATTGTAGACA 59.487 37.037 0.00 0.00 0.00 3.41
2400 2921 8.322091 GGCTAAGATATAACCCATTGTAGACAT 58.678 37.037 0.00 0.00 0.00 3.06
2431 2952 9.844790 TTTTGTCATCTCTAAATTACATGCAAG 57.155 29.630 0.00 0.00 0.00 4.01
2432 2953 8.791327 TTGTCATCTCTAAATTACATGCAAGA 57.209 30.769 0.00 0.00 0.00 3.02
2433 2954 8.201554 TGTCATCTCTAAATTACATGCAAGAC 57.798 34.615 0.00 0.00 0.00 3.01
2434 2955 8.043113 TGTCATCTCTAAATTACATGCAAGACT 58.957 33.333 0.00 0.00 0.00 3.24
2435 2956 8.887717 GTCATCTCTAAATTACATGCAAGACTT 58.112 33.333 0.00 0.00 0.00 3.01
2447 2968 7.840342 ACATGCAAGACTTAAGATAAGACTG 57.160 36.000 10.09 2.08 0.00 3.51
2448 2969 7.390027 ACATGCAAGACTTAAGATAAGACTGT 58.610 34.615 10.09 2.69 0.00 3.55
2449 2970 7.547370 ACATGCAAGACTTAAGATAAGACTGTC 59.453 37.037 10.09 0.00 0.00 3.51
2450 2971 6.398918 TGCAAGACTTAAGATAAGACTGTCC 58.601 40.000 10.09 0.00 0.00 4.02
2451 2972 6.211584 TGCAAGACTTAAGATAAGACTGTCCT 59.788 38.462 10.09 0.00 0.00 3.85
2452 2973 7.396339 TGCAAGACTTAAGATAAGACTGTCCTA 59.604 37.037 10.09 0.00 0.00 2.94
2453 2974 8.417884 GCAAGACTTAAGATAAGACTGTCCTAT 58.582 37.037 10.09 0.97 0.00 2.57
2454 2975 9.959749 CAAGACTTAAGATAAGACTGTCCTATC 57.040 37.037 15.49 15.49 0.00 2.08
2455 2976 9.702253 AAGACTTAAGATAAGACTGTCCTATCA 57.298 33.333 22.10 5.98 0.00 2.15
2456 2977 9.702253 AGACTTAAGATAAGACTGTCCTATCAA 57.298 33.333 22.10 11.67 0.00 2.57
2457 2978 9.738832 GACTTAAGATAAGACTGTCCTATCAAC 57.261 37.037 22.10 3.34 0.00 3.18
2458 2979 8.697292 ACTTAAGATAAGACTGTCCTATCAACC 58.303 37.037 22.10 3.06 0.00 3.77
2459 2980 8.603898 TTAAGATAAGACTGTCCTATCAACCA 57.396 34.615 22.10 7.00 0.00 3.67
2460 2981 7.682787 AAGATAAGACTGTCCTATCAACCAT 57.317 36.000 22.10 4.84 0.00 3.55
2461 2982 7.682787 AGATAAGACTGTCCTATCAACCATT 57.317 36.000 22.10 4.27 0.00 3.16
2462 2983 7.504403 AGATAAGACTGTCCTATCAACCATTG 58.496 38.462 22.10 0.00 0.00 2.82
2463 2984 5.505181 AAGACTGTCCTATCAACCATTGT 57.495 39.130 3.76 0.00 0.00 2.71
2464 2985 6.620877 AAGACTGTCCTATCAACCATTGTA 57.379 37.500 3.76 0.00 0.00 2.41
2465 2986 5.978814 AGACTGTCCTATCAACCATTGTAC 58.021 41.667 3.76 0.00 0.00 2.90
2466 2987 5.483937 AGACTGTCCTATCAACCATTGTACA 59.516 40.000 3.76 0.00 0.00 2.90
2467 2988 6.156949 AGACTGTCCTATCAACCATTGTACAT 59.843 38.462 3.76 0.00 0.00 2.29
2468 2989 6.115446 ACTGTCCTATCAACCATTGTACATG 58.885 40.000 0.00 0.00 0.00 3.21
2469 2990 4.881273 TGTCCTATCAACCATTGTACATGC 59.119 41.667 0.00 0.00 0.00 4.06
2470 2991 4.275936 GTCCTATCAACCATTGTACATGCC 59.724 45.833 0.00 0.00 0.00 4.40
2471 2992 3.569701 CCTATCAACCATTGTACATGCCC 59.430 47.826 0.00 0.00 0.00 5.36
2524 3048 2.600420 CGAGGTTCTGATGTTCATCACG 59.400 50.000 10.88 8.55 0.00 4.35
2526 3050 1.061131 GGTTCTGATGTTCATCACGCG 59.939 52.381 3.53 3.53 0.00 6.01
2527 3051 1.992667 GTTCTGATGTTCATCACGCGA 59.007 47.619 15.93 5.51 0.00 5.87
2602 3126 7.853299 ACCCAACTTTGTAAAATTGTTAAGGT 58.147 30.769 0.00 0.00 0.00 3.50
2619 3143 0.328258 GGTAACCTGGCCATCAGTGT 59.672 55.000 5.51 0.00 41.83 3.55
2638 3162 7.284074 TCAGTGTCTTTAATTGGTCAGGTTTA 58.716 34.615 0.00 0.00 0.00 2.01
2704 3228 5.587388 ATTTGCCAAATGTAGTGAGATGG 57.413 39.130 0.97 0.00 0.00 3.51
2741 3265 6.554605 TGAATCCTGAATTTCTCCCAAACTTT 59.445 34.615 0.00 0.00 0.00 2.66
2744 3268 4.021104 CCTGAATTTCTCCCAAACTTTCCC 60.021 45.833 0.00 0.00 0.00 3.97
2894 3421 1.068474 CAAGACCGACTTAACTGCCG 58.932 55.000 0.00 0.00 37.03 5.69
2905 3432 3.314357 ACTTAACTGCCGACTCCAAAAAC 59.686 43.478 0.00 0.00 0.00 2.43
2907 3434 1.308998 ACTGCCGACTCCAAAAACAG 58.691 50.000 0.00 0.00 0.00 3.16
2915 3445 3.303395 CGACTCCAAAAACAGAAGACTGC 60.303 47.826 0.00 0.00 46.95 4.40
2920 3450 4.821805 TCCAAAAACAGAAGACTGCCTTAG 59.178 41.667 0.00 0.00 46.95 2.18
2937 3467 5.181245 TGCCTTAGCTGAATCAGTGTTTTAC 59.819 40.000 12.29 0.00 40.80 2.01
2983 3513 4.003648 GTGGATTGACAGGACTGTAAAGG 58.996 47.826 4.73 0.00 45.05 3.11
2984 3514 3.009033 TGGATTGACAGGACTGTAAAGGG 59.991 47.826 4.73 0.00 45.05 3.95
3071 3602 8.857098 CCTGATCATGATCATAAAATTTCACCT 58.143 33.333 32.96 0.00 45.74 4.00
3072 3603 9.894783 CTGATCATGATCATAAAATTTCACCTC 57.105 33.333 32.96 6.47 45.74 3.85
3128 3662 1.604604 TCGTGCCTTCAGAAAAAGGG 58.395 50.000 4.93 0.00 45.07 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.848710 AGTGTTAGACTATGTATAGCTTCTGTA 57.151 33.333 0.00 0.00 33.68 2.74
3 4 8.754991 AGTGTTAGACTATGTATAGCTTCTGT 57.245 34.615 0.00 0.00 33.68 3.41
4 5 8.293867 GGAGTGTTAGACTATGTATAGCTTCTG 58.706 40.741 0.00 0.00 33.83 3.02
5 6 8.221944 AGGAGTGTTAGACTATGTATAGCTTCT 58.778 37.037 0.00 0.00 33.83 2.85
6 7 8.398878 AGGAGTGTTAGACTATGTATAGCTTC 57.601 38.462 0.00 0.00 33.83 3.86
7 8 9.509956 CTAGGAGTGTTAGACTATGTATAGCTT 57.490 37.037 0.00 0.00 33.83 3.74
8 9 8.882282 TCTAGGAGTGTTAGACTATGTATAGCT 58.118 37.037 0.00 0.00 33.83 3.32
9 10 8.938906 GTCTAGGAGTGTTAGACTATGTATAGC 58.061 40.741 5.42 0.00 42.30 2.97
19 20 5.641209 TCGTGTTAGTCTAGGAGTGTTAGAC 59.359 44.000 4.64 4.64 44.67 2.59
20 21 5.641209 GTCGTGTTAGTCTAGGAGTGTTAGA 59.359 44.000 0.00 0.00 0.00 2.10
21 22 5.410746 TGTCGTGTTAGTCTAGGAGTGTTAG 59.589 44.000 0.00 0.00 0.00 2.34
22 23 5.308014 TGTCGTGTTAGTCTAGGAGTGTTA 58.692 41.667 0.00 0.00 0.00 2.41
23 24 4.139786 TGTCGTGTTAGTCTAGGAGTGTT 58.860 43.478 0.00 0.00 0.00 3.32
24 25 3.748083 TGTCGTGTTAGTCTAGGAGTGT 58.252 45.455 0.00 0.00 0.00 3.55
25 26 4.663166 CATGTCGTGTTAGTCTAGGAGTG 58.337 47.826 0.00 0.00 0.00 3.51
26 27 3.128938 GCATGTCGTGTTAGTCTAGGAGT 59.871 47.826 0.00 0.00 0.00 3.85
30 31 2.846550 CGTGCATGTCGTGTTAGTCTAG 59.153 50.000 0.00 0.00 0.00 2.43
62 63 2.126031 GACGGAAGGTGGCGAGAC 60.126 66.667 0.00 0.00 0.00 3.36
68 70 1.663739 TTCTGTCGACGGAAGGTGG 59.336 57.895 31.15 5.68 36.40 4.61
84 86 2.694760 CCTCCAGCGGCAAAGCTTC 61.695 63.158 0.00 0.00 46.80 3.86
89 91 3.621805 TCGACCTCCAGCGGCAAA 61.622 61.111 1.45 0.00 0.00 3.68
98 100 2.408241 CGTCTCCCTGTCGACCTCC 61.408 68.421 14.12 0.00 0.00 4.30
119 125 0.935366 CTAGCGGCGGAACTTCGATC 60.935 60.000 9.78 0.00 0.00 3.69
120 126 1.065928 CTAGCGGCGGAACTTCGAT 59.934 57.895 9.78 0.00 0.00 3.59
121 127 1.989966 CTCTAGCGGCGGAACTTCGA 61.990 60.000 9.78 0.00 0.00 3.71
122 128 1.586564 CTCTAGCGGCGGAACTTCG 60.587 63.158 9.78 0.00 0.00 3.79
176 182 3.879892 GTCCCCAATCACTAAGATGAAGC 59.120 47.826 0.00 0.00 36.96 3.86
186 192 0.321653 GCGAGTTGTCCCCAATCACT 60.322 55.000 0.00 0.00 32.11 3.41
187 193 1.305930 GGCGAGTTGTCCCCAATCAC 61.306 60.000 0.00 0.00 32.11 3.06
188 194 1.002624 GGCGAGTTGTCCCCAATCA 60.003 57.895 0.00 0.00 32.11 2.57
189 195 1.002624 TGGCGAGTTGTCCCCAATC 60.003 57.895 0.00 0.00 32.11 2.67
190 196 1.303317 GTGGCGAGTTGTCCCCAAT 60.303 57.895 0.00 0.00 32.11 3.16
191 197 2.112297 GTGGCGAGTTGTCCCCAA 59.888 61.111 0.00 0.00 0.00 4.12
192 198 3.948719 GGTGGCGAGTTGTCCCCA 61.949 66.667 0.00 0.00 0.00 4.96
193 199 3.607370 GAGGTGGCGAGTTGTCCCC 62.607 68.421 0.00 0.00 0.00 4.81
194 200 2.047179 GAGGTGGCGAGTTGTCCC 60.047 66.667 0.00 0.00 0.00 4.46
195 201 2.432628 CGAGGTGGCGAGTTGTCC 60.433 66.667 0.00 0.00 0.00 4.02
196 202 1.733399 GACGAGGTGGCGAGTTGTC 60.733 63.158 0.00 0.00 34.83 3.18
197 203 2.338984 GACGAGGTGGCGAGTTGT 59.661 61.111 0.00 0.00 34.83 3.32
198 204 2.432628 GGACGAGGTGGCGAGTTG 60.433 66.667 0.00 0.00 34.83 3.16
199 205 2.600769 AGGACGAGGTGGCGAGTT 60.601 61.111 0.00 0.00 34.83 3.01
200 206 3.063084 GAGGACGAGGTGGCGAGT 61.063 66.667 0.00 0.00 34.83 4.18
201 207 3.827898 GGAGGACGAGGTGGCGAG 61.828 72.222 0.00 0.00 34.83 5.03
202 208 4.671590 TGGAGGACGAGGTGGCGA 62.672 66.667 0.00 0.00 34.83 5.54
203 209 4.135153 CTGGAGGACGAGGTGGCG 62.135 72.222 0.00 0.00 37.29 5.69
204 210 3.775654 CCTGGAGGACGAGGTGGC 61.776 72.222 0.00 0.00 37.27 5.01
205 211 3.077556 CCCTGGAGGACGAGGTGG 61.078 72.222 0.00 0.00 39.81 4.61
206 212 3.077556 CCCCTGGAGGACGAGGTG 61.078 72.222 0.00 0.00 39.81 4.00
207 213 3.602030 ACCCCTGGAGGACGAGGT 61.602 66.667 8.04 0.00 39.81 3.85
208 214 3.077556 CACCCCTGGAGGACGAGG 61.078 72.222 8.04 0.00 40.87 4.63
209 215 2.283966 ACACCCCTGGAGGACGAG 60.284 66.667 8.04 0.00 38.24 4.18
210 216 2.084089 TACACACCCCTGGAGGACGA 62.084 60.000 8.04 0.00 38.24 4.20
211 217 1.605058 CTACACACCCCTGGAGGACG 61.605 65.000 8.04 2.25 38.24 4.79
227 233 3.412879 GACCCGACGGAGCTGCTAC 62.413 68.421 17.49 0.33 0.00 3.58
244 250 2.430382 GAACCAGAAGTGCGGTCGGA 62.430 60.000 0.00 0.00 33.17 4.55
277 283 4.767255 GTGACGGGAGCCAGCTGG 62.767 72.222 29.34 29.34 38.53 4.85
280 286 4.101448 ATGGTGACGGGAGCCAGC 62.101 66.667 0.00 0.00 41.27 4.85
283 289 2.125106 GACATGGTGACGGGAGCC 60.125 66.667 0.00 0.00 0.00 4.70
301 307 4.849329 CGTCCGTGGTAGCTCGGC 62.849 72.222 26.14 20.06 45.44 5.54
365 371 1.487452 TTCGTGTGCTCTGTTCGTGC 61.487 55.000 0.00 0.00 0.00 5.34
372 378 2.675056 GCTGCCTTCGTGTGCTCTG 61.675 63.158 0.00 0.00 0.00 3.35
529 1008 2.302260 CTCTACAGATCAGGCCTCGAA 58.698 52.381 0.00 0.00 0.00 3.71
531 1010 1.336440 CACTCTACAGATCAGGCCTCG 59.664 57.143 0.00 0.00 0.00 4.63
535 1014 0.755686 CCCCACTCTACAGATCAGGC 59.244 60.000 0.00 0.00 0.00 4.85
543 1022 2.954684 CGCCTTGCCCCACTCTACA 61.955 63.158 0.00 0.00 0.00 2.74
544 1023 2.125106 CGCCTTGCCCCACTCTAC 60.125 66.667 0.00 0.00 0.00 2.59
602 1092 3.173240 GCTTCGTCTCCGTCGTGC 61.173 66.667 0.00 0.00 35.01 5.34
624 1114 3.213402 CTCCTCCTCGACTCCCGC 61.213 72.222 0.00 0.00 38.37 6.13
652 1142 0.719015 ATCCTCTCTCCCACTTCCCA 59.281 55.000 0.00 0.00 0.00 4.37
735 1225 1.683385 ACTGACTTGGCAAAGAAAGGC 59.317 47.619 8.15 0.00 36.84 4.35
736 1226 3.243535 GGAACTGACTTGGCAAAGAAAGG 60.244 47.826 8.15 0.00 36.84 3.11
737 1227 3.633986 AGGAACTGACTTGGCAAAGAAAG 59.366 43.478 8.15 6.90 37.18 2.62
738 1228 3.631250 AGGAACTGACTTGGCAAAGAAA 58.369 40.909 8.15 0.00 37.18 2.52
739 1229 3.297134 AGGAACTGACTTGGCAAAGAA 57.703 42.857 8.15 0.00 37.18 2.52
740 1230 4.134563 GTTAGGAACTGACTTGGCAAAGA 58.865 43.478 8.15 0.00 42.06 2.52
741 1231 3.058914 CGTTAGGAACTGACTTGGCAAAG 60.059 47.826 0.00 0.00 43.23 2.77
742 1232 2.875933 CGTTAGGAACTGACTTGGCAAA 59.124 45.455 0.00 0.00 43.23 3.68
743 1233 2.103432 TCGTTAGGAACTGACTTGGCAA 59.897 45.455 0.00 0.00 43.23 4.52
744 1234 1.689813 TCGTTAGGAACTGACTTGGCA 59.310 47.619 0.00 0.00 43.23 4.92
745 1235 2.338500 CTCGTTAGGAACTGACTTGGC 58.662 52.381 0.00 0.00 43.23 4.52
746 1236 2.338500 GCTCGTTAGGAACTGACTTGG 58.662 52.381 0.00 0.00 43.23 3.61
747 1237 1.986378 CGCTCGTTAGGAACTGACTTG 59.014 52.381 0.00 0.00 43.23 3.16
748 1238 1.067776 CCGCTCGTTAGGAACTGACTT 60.068 52.381 0.00 0.00 43.23 3.01
749 1239 0.526662 CCGCTCGTTAGGAACTGACT 59.473 55.000 0.00 0.00 43.23 3.41
750 1240 0.458025 CCCGCTCGTTAGGAACTGAC 60.458 60.000 0.00 0.00 41.89 3.51
751 1241 1.888018 CCCGCTCGTTAGGAACTGA 59.112 57.895 0.00 0.00 41.52 3.41
752 1242 1.810030 GCCCGCTCGTTAGGAACTG 60.810 63.158 0.00 0.00 41.52 3.16
753 1243 2.577593 GCCCGCTCGTTAGGAACT 59.422 61.111 0.00 0.00 46.37 3.01
754 1244 2.510918 GGCCCGCTCGTTAGGAAC 60.511 66.667 0.00 0.00 0.00 3.62
755 1245 3.777910 GGGCCCGCTCGTTAGGAA 61.778 66.667 5.69 0.00 0.00 3.36
758 1248 4.832608 GTGGGGCCCGCTCGTTAG 62.833 72.222 28.90 0.00 0.00 2.34
824 1314 1.132262 CGTGTTTGGTCACTTGCAGTT 59.868 47.619 0.00 0.00 36.33 3.16
825 1315 0.732571 CGTGTTTGGTCACTTGCAGT 59.267 50.000 0.00 0.00 36.33 4.40
826 1316 0.029300 CCGTGTTTGGTCACTTGCAG 59.971 55.000 0.00 0.00 36.33 4.41
827 1317 1.999071 GCCGTGTTTGGTCACTTGCA 61.999 55.000 0.00 0.00 35.44 4.08
828 1318 1.299089 GCCGTGTTTGGTCACTTGC 60.299 57.895 0.00 0.00 36.33 4.01
829 1319 1.358759 GGCCGTGTTTGGTCACTTG 59.641 57.895 0.00 0.00 36.33 3.16
870 1360 2.547640 ATTGATGCTGCCTCCGCTGT 62.548 55.000 0.00 0.00 36.39 4.40
873 1363 1.378882 TTGATTGATGCTGCCTCCGC 61.379 55.000 0.00 0.00 0.00 5.54
874 1364 1.097232 TTTGATTGATGCTGCCTCCG 58.903 50.000 0.00 0.00 0.00 4.63
875 1365 1.135721 GGTTTGATTGATGCTGCCTCC 59.864 52.381 0.00 0.00 0.00 4.30
899 1389 2.027100 GGGAGTACCTTTCCACCTTGAG 60.027 54.545 2.38 0.00 36.40 3.02
900 1390 1.982958 GGGAGTACCTTTCCACCTTGA 59.017 52.381 2.38 0.00 36.40 3.02
901 1391 1.702957 TGGGAGTACCTTTCCACCTTG 59.297 52.381 0.00 0.00 41.11 3.61
902 1392 2.107726 GTTGGGAGTACCTTTCCACCTT 59.892 50.000 0.00 0.00 41.11 3.50
903 1393 1.703513 GTTGGGAGTACCTTTCCACCT 59.296 52.381 0.00 0.00 41.11 4.00
904 1394 1.422402 TGTTGGGAGTACCTTTCCACC 59.578 52.381 0.00 0.00 41.11 4.61
905 1395 2.943036 TGTTGGGAGTACCTTTCCAC 57.057 50.000 0.00 0.00 41.11 4.02
906 1396 3.245122 GGATTGTTGGGAGTACCTTTCCA 60.245 47.826 0.00 0.00 41.11 3.53
907 1397 3.353557 GGATTGTTGGGAGTACCTTTCC 58.646 50.000 0.00 0.00 41.11 3.13
908 1398 3.007635 CGGATTGTTGGGAGTACCTTTC 58.992 50.000 0.00 0.00 41.11 2.62
909 1399 2.290705 CCGGATTGTTGGGAGTACCTTT 60.291 50.000 0.00 0.00 41.11 3.11
910 1400 1.280998 CCGGATTGTTGGGAGTACCTT 59.719 52.381 0.00 0.00 41.11 3.50
911 1401 0.909623 CCGGATTGTTGGGAGTACCT 59.090 55.000 0.00 0.00 41.11 3.08
912 1402 0.746923 GCCGGATTGTTGGGAGTACC 60.747 60.000 5.05 0.00 40.81 3.34
913 1403 1.087771 CGCCGGATTGTTGGGAGTAC 61.088 60.000 5.05 0.00 0.00 2.73
914 1404 1.219664 CGCCGGATTGTTGGGAGTA 59.780 57.895 5.05 0.00 0.00 2.59
934 1424 1.557371 GAGAGGGAGAAAGGGGAAGTG 59.443 57.143 0.00 0.00 0.00 3.16
954 1444 2.670148 CGAAGGAAGGTGGAGGGGG 61.670 68.421 0.00 0.00 0.00 5.40
973 1463 2.874664 CGGTCTGTTCGGTGGGGAA 61.875 63.158 0.00 0.00 0.00 3.97
977 1467 2.048503 GGACGGTCTGTTCGGTGG 60.049 66.667 8.23 0.00 0.00 4.61
1071 1561 7.039644 CCATGAGGGTAAGACTCGAGTAATAAT 60.040 40.741 20.09 5.71 37.79 1.28
1072 1562 6.264744 CCATGAGGGTAAGACTCGAGTAATAA 59.735 42.308 20.09 1.39 37.79 1.40
1073 1563 5.768662 CCATGAGGGTAAGACTCGAGTAATA 59.231 44.000 20.09 11.74 37.79 0.98
1074 1564 4.585162 CCATGAGGGTAAGACTCGAGTAAT 59.415 45.833 20.09 12.82 37.79 1.89
1094 1584 3.056607 CGCCAAGAAATCAAGGAAACCAT 60.057 43.478 0.00 0.00 0.00 3.55
1095 1585 2.295909 CGCCAAGAAATCAAGGAAACCA 59.704 45.455 0.00 0.00 0.00 3.67
1098 1588 2.288152 GCACGCCAAGAAATCAAGGAAA 60.288 45.455 0.00 0.00 0.00 3.13
1099 1589 1.269448 GCACGCCAAGAAATCAAGGAA 59.731 47.619 0.00 0.00 0.00 3.36
1188 1678 2.433145 CAGCACACCATCGACGCT 60.433 61.111 0.00 0.00 0.00 5.07
1203 1693 5.680619 AGATAGACTAGACTGAGGTGACAG 58.319 45.833 4.90 0.00 42.78 3.51
1204 1694 5.702065 AGATAGACTAGACTGAGGTGACA 57.298 43.478 4.90 0.00 0.00 3.58
1208 1698 6.790461 TGGAGATAGATAGACTAGACTGAGGT 59.210 42.308 4.90 0.00 34.35 3.85
1209 1699 7.252612 TGGAGATAGATAGACTAGACTGAGG 57.747 44.000 4.90 0.00 34.35 3.86
1211 1701 8.035448 TGTTGGAGATAGATAGACTAGACTGA 57.965 38.462 4.90 0.00 34.35 3.41
1212 1702 8.862325 ATGTTGGAGATAGATAGACTAGACTG 57.138 38.462 4.90 0.00 34.35 3.51
1213 1703 9.875708 AAATGTTGGAGATAGATAGACTAGACT 57.124 33.333 0.00 0.00 34.35 3.24
1218 1708 8.986991 AGTGAAAATGTTGGAGATAGATAGACT 58.013 33.333 0.00 0.00 0.00 3.24
1223 1713 9.553064 GACATAGTGAAAATGTTGGAGATAGAT 57.447 33.333 0.00 0.00 37.69 1.98
1224 1714 8.762645 AGACATAGTGAAAATGTTGGAGATAGA 58.237 33.333 0.00 0.00 37.69 1.98
1225 1715 8.954950 AGACATAGTGAAAATGTTGGAGATAG 57.045 34.615 0.00 0.00 37.69 2.08
1226 1716 9.383519 GAAGACATAGTGAAAATGTTGGAGATA 57.616 33.333 0.00 0.00 37.69 1.98
1227 1717 7.884877 TGAAGACATAGTGAAAATGTTGGAGAT 59.115 33.333 0.00 0.00 37.69 2.75
1245 1735 8.031277 GCAAAATAATTGGAGAAGTGAAGACAT 58.969 33.333 0.00 0.00 0.00 3.06
1257 1750 5.107133 CAGGAGCAAGCAAAATAATTGGAG 58.893 41.667 0.00 0.00 0.00 3.86
1262 1755 5.726980 TTCACAGGAGCAAGCAAAATAAT 57.273 34.783 0.00 0.00 0.00 1.28
1263 1756 5.472148 CATTCACAGGAGCAAGCAAAATAA 58.528 37.500 0.00 0.00 0.00 1.40
1285 1778 4.886755 ATGGAATGAGAGGAAAATCCCA 57.113 40.909 0.00 0.00 37.19 4.37
1322 1815 1.002366 GCATCTGTACACGCCTTCAG 58.998 55.000 0.00 0.00 0.00 3.02
1504 2015 1.300963 GCTTGTCTGGCTGGATGGA 59.699 57.895 0.00 0.00 0.00 3.41
1583 2094 2.338785 GCCTTGGAGTTGCTCTGCC 61.339 63.158 0.00 0.00 33.42 4.85
1646 2157 2.029844 GTGTCGTCTTGAGCTGGCC 61.030 63.158 0.00 0.00 0.00 5.36
1650 2161 0.889638 TCTCCGTGTCGTCTTGAGCT 60.890 55.000 0.00 0.00 0.00 4.09
1700 2211 1.374343 CTTGCTGCGATGGCTGACAT 61.374 55.000 10.74 0.00 44.18 3.06
1775 2286 1.946475 GACCGGTTTCTCCTCCTCCG 61.946 65.000 9.42 0.00 40.72 4.63
1776 2287 1.898885 GACCGGTTTCTCCTCCTCC 59.101 63.158 9.42 0.00 0.00 4.30
1777 2288 0.964358 TCGACCGGTTTCTCCTCCTC 60.964 60.000 9.42 0.00 0.00 3.71
1891 2402 4.357947 GCTCAGGACGTGCACCGA 62.358 66.667 12.15 1.58 40.70 4.69
2029 2540 3.095911 CGACGGCTGCGAGTAGTA 58.904 61.111 3.66 0.00 0.00 1.82
2132 2643 1.153489 CAGCTCCCTCACATCACGG 60.153 63.158 0.00 0.00 0.00 4.94
2200 2721 4.330250 AGATAGCATCATTGTACATGCCC 58.670 43.478 14.08 5.86 45.63 5.36
2201 2722 5.954296 AAGATAGCATCATTGTACATGCC 57.046 39.130 14.08 1.71 45.63 4.40
2203 2724 9.486497 ACTTCTAAGATAGCATCATTGTACATG 57.514 33.333 0.00 0.00 0.00 3.21
2206 2727 8.879342 ACACTTCTAAGATAGCATCATTGTAC 57.121 34.615 0.00 0.00 0.00 2.90
2207 2728 8.695456 TGACACTTCTAAGATAGCATCATTGTA 58.305 33.333 0.00 0.00 0.00 2.41
2208 2729 7.493971 GTGACACTTCTAAGATAGCATCATTGT 59.506 37.037 0.00 0.00 0.00 2.71
2209 2730 7.306457 CGTGACACTTCTAAGATAGCATCATTG 60.306 40.741 3.68 0.00 0.00 2.82
2210 2731 6.699204 CGTGACACTTCTAAGATAGCATCATT 59.301 38.462 3.68 0.00 0.00 2.57
2211 2732 6.183360 ACGTGACACTTCTAAGATAGCATCAT 60.183 38.462 3.68 0.00 0.00 2.45
2212 2733 5.125578 ACGTGACACTTCTAAGATAGCATCA 59.874 40.000 3.68 0.00 0.00 3.07
2213 2734 5.583495 ACGTGACACTTCTAAGATAGCATC 58.417 41.667 3.68 0.00 0.00 3.91
2214 2735 5.584253 ACGTGACACTTCTAAGATAGCAT 57.416 39.130 3.68 0.00 0.00 3.79
2215 2736 5.066117 CCTACGTGACACTTCTAAGATAGCA 59.934 44.000 0.00 0.00 0.00 3.49
2216 2737 5.296283 TCCTACGTGACACTTCTAAGATAGC 59.704 44.000 0.00 0.00 0.00 2.97
2217 2738 6.922247 TCCTACGTGACACTTCTAAGATAG 57.078 41.667 0.00 0.00 0.00 2.08
2218 2739 8.969260 TTATCCTACGTGACACTTCTAAGATA 57.031 34.615 0.00 0.88 0.00 1.98
2219 2740 7.876936 TTATCCTACGTGACACTTCTAAGAT 57.123 36.000 0.00 1.76 0.00 2.40
2220 2741 7.692460 TTTATCCTACGTGACACTTCTAAGA 57.308 36.000 0.00 0.00 0.00 2.10
2221 2742 7.435488 CCATTTATCCTACGTGACACTTCTAAG 59.565 40.741 0.00 0.00 0.00 2.18
2222 2743 7.093640 ACCATTTATCCTACGTGACACTTCTAA 60.094 37.037 0.00 0.00 0.00 2.10
2223 2744 6.379133 ACCATTTATCCTACGTGACACTTCTA 59.621 38.462 0.00 0.00 0.00 2.10
2224 2745 5.187186 ACCATTTATCCTACGTGACACTTCT 59.813 40.000 0.00 0.00 0.00 2.85
2225 2746 5.291128 CACCATTTATCCTACGTGACACTTC 59.709 44.000 0.00 0.00 0.00 3.01
2226 2747 5.046878 TCACCATTTATCCTACGTGACACTT 60.047 40.000 0.00 0.00 0.00 3.16
2227 2748 4.464951 TCACCATTTATCCTACGTGACACT 59.535 41.667 0.00 0.00 0.00 3.55
2228 2749 4.751060 TCACCATTTATCCTACGTGACAC 58.249 43.478 0.00 0.00 0.00 3.67
2229 2750 4.142026 CCTCACCATTTATCCTACGTGACA 60.142 45.833 0.00 0.00 0.00 3.58
2230 2751 4.142004 ACCTCACCATTTATCCTACGTGAC 60.142 45.833 0.00 0.00 0.00 3.67
2231 2752 4.028131 ACCTCACCATTTATCCTACGTGA 58.972 43.478 0.00 0.00 0.00 4.35
2232 2753 4.119862 CACCTCACCATTTATCCTACGTG 58.880 47.826 0.00 0.00 0.00 4.49
2233 2754 4.028131 TCACCTCACCATTTATCCTACGT 58.972 43.478 0.00 0.00 0.00 3.57
2234 2755 4.665833 TCACCTCACCATTTATCCTACG 57.334 45.455 0.00 0.00 0.00 3.51
2235 2756 5.130477 TCCTTCACCTCACCATTTATCCTAC 59.870 44.000 0.00 0.00 0.00 3.18
2236 2757 5.285401 TCCTTCACCTCACCATTTATCCTA 58.715 41.667 0.00 0.00 0.00 2.94
2237 2758 4.111577 TCCTTCACCTCACCATTTATCCT 58.888 43.478 0.00 0.00 0.00 3.24
2238 2759 4.164221 TCTCCTTCACCTCACCATTTATCC 59.836 45.833 0.00 0.00 0.00 2.59
2239 2760 5.129485 TCTCTCCTTCACCTCACCATTTATC 59.871 44.000 0.00 0.00 0.00 1.75
2240 2761 5.032846 TCTCTCCTTCACCTCACCATTTAT 58.967 41.667 0.00 0.00 0.00 1.40
2241 2762 4.425772 TCTCTCCTTCACCTCACCATTTA 58.574 43.478 0.00 0.00 0.00 1.40
2242 2763 3.251484 TCTCTCCTTCACCTCACCATTT 58.749 45.455 0.00 0.00 0.00 2.32
2243 2764 2.907892 TCTCTCCTTCACCTCACCATT 58.092 47.619 0.00 0.00 0.00 3.16
2244 2765 2.630889 TCTCTCCTTCACCTCACCAT 57.369 50.000 0.00 0.00 0.00 3.55
2245 2766 2.398754 TTCTCTCCTTCACCTCACCA 57.601 50.000 0.00 0.00 0.00 4.17
2246 2767 3.071747 AGTTTTCTCTCCTTCACCTCACC 59.928 47.826 0.00 0.00 0.00 4.02
2247 2768 4.202264 TGAGTTTTCTCTCCTTCACCTCAC 60.202 45.833 0.00 0.00 46.30 3.51
2248 2769 3.967326 TGAGTTTTCTCTCCTTCACCTCA 59.033 43.478 0.00 0.00 46.30 3.86
2249 2770 4.608948 TGAGTTTTCTCTCCTTCACCTC 57.391 45.455 0.00 0.00 46.30 3.85
2250 2771 6.498651 TCTTATGAGTTTTCTCTCCTTCACCT 59.501 38.462 0.00 0.00 46.30 4.00
2251 2772 6.702329 TCTTATGAGTTTTCTCTCCTTCACC 58.298 40.000 0.00 0.00 46.30 4.02
2252 2773 8.608844 TTTCTTATGAGTTTTCTCTCCTTCAC 57.391 34.615 0.00 0.00 46.30 3.18
2253 2774 9.277783 CTTTTCTTATGAGTTTTCTCTCCTTCA 57.722 33.333 0.00 0.00 46.30 3.02
2254 2775 8.726068 CCTTTTCTTATGAGTTTTCTCTCCTTC 58.274 37.037 0.00 0.00 46.30 3.46
2255 2776 7.175816 GCCTTTTCTTATGAGTTTTCTCTCCTT 59.824 37.037 0.00 0.00 46.30 3.36
2256 2777 6.657117 GCCTTTTCTTATGAGTTTTCTCTCCT 59.343 38.462 0.00 0.00 46.30 3.69
2257 2778 6.657117 AGCCTTTTCTTATGAGTTTTCTCTCC 59.343 38.462 0.00 0.00 46.30 3.71
2258 2779 7.680442 AGCCTTTTCTTATGAGTTTTCTCTC 57.320 36.000 0.00 0.00 46.30 3.20
2259 2780 7.503902 ACAAGCCTTTTCTTATGAGTTTTCTCT 59.496 33.333 0.00 0.00 46.30 3.10
2260 2781 7.652727 ACAAGCCTTTTCTTATGAGTTTTCTC 58.347 34.615 0.00 0.00 46.33 2.87
2261 2782 7.503902 AGACAAGCCTTTTCTTATGAGTTTTCT 59.496 33.333 0.00 0.00 0.00 2.52
2262 2783 7.652727 AGACAAGCCTTTTCTTATGAGTTTTC 58.347 34.615 0.00 0.00 0.00 2.29
2263 2784 7.588497 AGACAAGCCTTTTCTTATGAGTTTT 57.412 32.000 0.00 0.00 0.00 2.43
2264 2785 7.503902 AGAAGACAAGCCTTTTCTTATGAGTTT 59.496 33.333 5.86 0.00 29.54 2.66
2265 2786 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
2266 2787 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
2267 2788 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
2268 2789 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
2269 2790 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
2271 2792 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
2272 2793 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
2273 2794 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
2274 2795 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
2275 2796 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
2276 2797 9.746457 ATCTTAAATAAGAGAAGACAAGCCTTT 57.254 29.630 8.68 0.00 44.67 3.11
2310 2831 7.495279 AGACAAATTGTGCTAAGAGATCATCTC 59.505 37.037 6.55 6.55 43.70 2.75
2311 2832 7.337167 AGACAAATTGTGCTAAGAGATCATCT 58.663 34.615 2.20 0.00 41.27 2.90
2312 2833 7.279536 TGAGACAAATTGTGCTAAGAGATCATC 59.720 37.037 2.20 0.00 0.00 2.92
2313 2834 7.065563 GTGAGACAAATTGTGCTAAGAGATCAT 59.934 37.037 2.20 0.00 0.00 2.45
2314 2835 6.369890 GTGAGACAAATTGTGCTAAGAGATCA 59.630 38.462 2.20 0.00 0.00 2.92
2315 2836 6.183360 GGTGAGACAAATTGTGCTAAGAGATC 60.183 42.308 2.20 0.00 0.00 2.75
2316 2837 5.645497 GGTGAGACAAATTGTGCTAAGAGAT 59.355 40.000 2.20 0.00 0.00 2.75
2317 2838 4.997395 GGTGAGACAAATTGTGCTAAGAGA 59.003 41.667 2.20 0.00 0.00 3.10
2318 2839 4.756642 TGGTGAGACAAATTGTGCTAAGAG 59.243 41.667 2.20 0.00 0.00 2.85
2319 2840 4.713553 TGGTGAGACAAATTGTGCTAAGA 58.286 39.130 2.20 0.00 0.00 2.10
2320 2841 5.633830 ATGGTGAGACAAATTGTGCTAAG 57.366 39.130 2.20 0.00 0.00 2.18
2321 2842 7.701539 AATATGGTGAGACAAATTGTGCTAA 57.298 32.000 2.20 0.00 0.00 3.09
2322 2843 7.701539 AAATATGGTGAGACAAATTGTGCTA 57.298 32.000 2.20 0.00 0.00 3.49
2323 2844 6.594788 AAATATGGTGAGACAAATTGTGCT 57.405 33.333 2.20 0.36 0.00 4.40
2324 2845 8.755696 TTAAAATATGGTGAGACAAATTGTGC 57.244 30.769 2.20 0.00 0.00 4.57
2325 2846 9.357652 CCTTAAAATATGGTGAGACAAATTGTG 57.642 33.333 2.20 0.00 0.00 3.33
2326 2847 9.308000 TCCTTAAAATATGGTGAGACAAATTGT 57.692 29.630 0.00 0.00 0.00 2.71
2364 2885 9.166222 TGGGTTATATCTTAGCCTTATCTTCAA 57.834 33.333 0.00 0.00 33.15 2.69
2365 2886 8.736097 TGGGTTATATCTTAGCCTTATCTTCA 57.264 34.615 0.00 0.00 33.15 3.02
2367 2888 9.965902 CAATGGGTTATATCTTAGCCTTATCTT 57.034 33.333 0.00 0.00 33.15 2.40
2368 2889 9.117223 ACAATGGGTTATATCTTAGCCTTATCT 57.883 33.333 0.00 0.00 33.15 1.98
2371 2892 9.610104 TCTACAATGGGTTATATCTTAGCCTTA 57.390 33.333 0.00 0.00 33.15 2.69
2372 2893 8.376270 GTCTACAATGGGTTATATCTTAGCCTT 58.624 37.037 0.00 0.00 33.15 4.35
2373 2894 7.512746 TGTCTACAATGGGTTATATCTTAGCCT 59.487 37.037 0.00 0.00 33.15 4.58
2374 2895 7.676947 TGTCTACAATGGGTTATATCTTAGCC 58.323 38.462 0.00 0.00 0.00 3.93
2405 2926 9.844790 CTTGCATGTAATTTAGAGATGACAAAA 57.155 29.630 0.00 0.00 0.00 2.44
2406 2927 9.230122 TCTTGCATGTAATTTAGAGATGACAAA 57.770 29.630 0.00 0.00 0.00 2.83
2407 2928 8.668353 GTCTTGCATGTAATTTAGAGATGACAA 58.332 33.333 0.00 0.00 0.00 3.18
2408 2929 8.043113 AGTCTTGCATGTAATTTAGAGATGACA 58.957 33.333 0.00 0.00 0.00 3.58
2409 2930 8.430801 AGTCTTGCATGTAATTTAGAGATGAC 57.569 34.615 0.00 0.00 0.00 3.06
2421 2942 9.371136 CAGTCTTATCTTAAGTCTTGCATGTAA 57.629 33.333 1.63 0.00 0.00 2.41
2422 2943 8.531982 ACAGTCTTATCTTAAGTCTTGCATGTA 58.468 33.333 1.63 0.00 0.00 2.29
2423 2944 7.390027 ACAGTCTTATCTTAAGTCTTGCATGT 58.610 34.615 1.63 0.00 0.00 3.21
2424 2945 7.010923 GGACAGTCTTATCTTAAGTCTTGCATG 59.989 40.741 1.63 0.00 0.00 4.06
2425 2946 7.044798 GGACAGTCTTATCTTAAGTCTTGCAT 58.955 38.462 1.63 0.00 0.00 3.96
2426 2947 6.211584 AGGACAGTCTTATCTTAAGTCTTGCA 59.788 38.462 1.63 0.00 0.00 4.08
2427 2948 6.635755 AGGACAGTCTTATCTTAAGTCTTGC 58.364 40.000 1.63 0.00 0.00 4.01
2428 2949 9.959749 GATAGGACAGTCTTATCTTAAGTCTTG 57.040 37.037 20.49 0.00 33.99 3.02
2429 2950 9.702253 TGATAGGACAGTCTTATCTTAAGTCTT 57.298 33.333 25.37 0.00 36.68 3.01
2430 2951 9.702253 TTGATAGGACAGTCTTATCTTAAGTCT 57.298 33.333 25.37 4.13 36.68 3.24
2431 2952 9.738832 GTTGATAGGACAGTCTTATCTTAAGTC 57.261 37.037 25.37 7.10 36.68 3.01
2432 2953 8.697292 GGTTGATAGGACAGTCTTATCTTAAGT 58.303 37.037 25.37 0.00 36.68 2.24
2433 2954 8.696374 TGGTTGATAGGACAGTCTTATCTTAAG 58.304 37.037 25.37 0.00 36.68 1.85
2434 2955 8.603898 TGGTTGATAGGACAGTCTTATCTTAA 57.396 34.615 25.37 14.43 36.68 1.85
2435 2956 8.783660 ATGGTTGATAGGACAGTCTTATCTTA 57.216 34.615 25.37 15.05 36.68 2.10
2436 2957 7.682787 ATGGTTGATAGGACAGTCTTATCTT 57.317 36.000 25.37 9.23 36.68 2.40
2437 2958 7.126421 ACAATGGTTGATAGGACAGTCTTATCT 59.874 37.037 25.37 9.07 36.68 1.98
2438 2959 7.275920 ACAATGGTTGATAGGACAGTCTTATC 58.724 38.462 20.82 20.82 36.38 1.75
2439 2960 7.200434 ACAATGGTTGATAGGACAGTCTTAT 57.800 36.000 4.88 4.88 0.00 1.73
2440 2961 6.620877 ACAATGGTTGATAGGACAGTCTTA 57.379 37.500 0.00 0.00 0.00 2.10
2441 2962 5.505181 ACAATGGTTGATAGGACAGTCTT 57.495 39.130 0.00 0.00 0.00 3.01
2442 2963 5.483937 TGTACAATGGTTGATAGGACAGTCT 59.516 40.000 0.00 0.00 0.00 3.24
2443 2964 5.730550 TGTACAATGGTTGATAGGACAGTC 58.269 41.667 0.00 0.00 0.00 3.51
2444 2965 5.755409 TGTACAATGGTTGATAGGACAGT 57.245 39.130 0.00 0.00 0.00 3.55
2445 2966 5.008019 GCATGTACAATGGTTGATAGGACAG 59.992 44.000 0.00 0.00 0.00 3.51
2446 2967 4.881273 GCATGTACAATGGTTGATAGGACA 59.119 41.667 0.00 0.00 0.00 4.02
2447 2968 4.275936 GGCATGTACAATGGTTGATAGGAC 59.724 45.833 0.00 0.00 0.00 3.85
2448 2969 4.460263 GGCATGTACAATGGTTGATAGGA 58.540 43.478 0.00 0.00 0.00 2.94
2449 2970 3.569701 GGGCATGTACAATGGTTGATAGG 59.430 47.826 0.00 0.00 0.00 2.57
2450 2971 4.464008 AGGGCATGTACAATGGTTGATAG 58.536 43.478 0.00 0.00 0.00 2.08
2451 2972 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
2452 2973 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
2453 2974 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
2454 2975 4.016444 ACTAAGGGCATGTACAATGGTTG 58.984 43.478 0.00 0.00 0.00 3.77
2455 2976 4.316025 ACTAAGGGCATGTACAATGGTT 57.684 40.909 0.00 0.00 0.00 3.67
2456 2977 4.719773 TCTACTAAGGGCATGTACAATGGT 59.280 41.667 0.00 0.00 0.00 3.55
2457 2978 5.290493 TCTACTAAGGGCATGTACAATGG 57.710 43.478 0.00 0.00 0.00 3.16
2458 2979 6.767902 ACAATCTACTAAGGGCATGTACAATG 59.232 38.462 0.00 0.12 0.00 2.82
2459 2980 6.767902 CACAATCTACTAAGGGCATGTACAAT 59.232 38.462 0.00 0.00 0.00 2.71
2460 2981 6.112734 CACAATCTACTAAGGGCATGTACAA 58.887 40.000 0.00 0.00 0.00 2.41
2461 2982 5.670485 CACAATCTACTAAGGGCATGTACA 58.330 41.667 0.00 0.00 0.00 2.90
2462 2983 4.511826 GCACAATCTACTAAGGGCATGTAC 59.488 45.833 0.00 0.00 0.00 2.90
2463 2984 4.408921 AGCACAATCTACTAAGGGCATGTA 59.591 41.667 0.00 0.00 0.00 2.29
2464 2985 3.200825 AGCACAATCTACTAAGGGCATGT 59.799 43.478 0.00 0.00 0.00 3.21
2465 2986 3.813443 AGCACAATCTACTAAGGGCATG 58.187 45.455 0.00 0.00 0.00 4.06
2466 2987 4.656112 AGTAGCACAATCTACTAAGGGCAT 59.344 41.667 1.96 0.00 45.30 4.40
2467 2988 4.030913 AGTAGCACAATCTACTAAGGGCA 58.969 43.478 1.96 0.00 45.30 5.36
2468 2989 4.674281 AGTAGCACAATCTACTAAGGGC 57.326 45.455 1.96 0.00 45.30 5.19
2469 2990 6.963083 ACTAGTAGCACAATCTACTAAGGG 57.037 41.667 10.66 4.16 45.94 3.95
2470 2991 8.905660 TCTACTAGTAGCACAATCTACTAAGG 57.094 38.462 22.87 0.00 45.94 2.69
2526 3050 1.153667 CTGCTTCGAGCCTGGACTC 60.154 63.158 0.00 2.84 41.51 3.36
2527 3051 1.476007 AACTGCTTCGAGCCTGGACT 61.476 55.000 0.00 0.00 41.51 3.85
2676 3200 8.984891 TCTCACTACATTTGGCAAATAATTTG 57.015 30.769 23.93 15.73 43.44 2.32
2750 3274 4.638304 ACGTACTTGTTGGCAGTATTTCT 58.362 39.130 0.00 0.00 0.00 2.52
2751 3275 5.049954 TGAACGTACTTGTTGGCAGTATTTC 60.050 40.000 0.00 0.00 30.75 2.17
2769 3293 3.118149 ACAAACTACCCTTCCTTGAACGT 60.118 43.478 0.00 0.00 0.00 3.99
2894 3421 3.003793 GGCAGTCTTCTGTTTTTGGAGTC 59.996 47.826 0.00 0.00 43.05 3.36
2905 3432 3.325293 TTCAGCTAAGGCAGTCTTCTG 57.675 47.619 0.00 0.00 43.87 3.02
2907 3434 3.866651 TGATTCAGCTAAGGCAGTCTTC 58.133 45.455 0.00 0.00 41.70 2.87
2915 3445 5.408604 ACGTAAAACACTGATTCAGCTAAGG 59.591 40.000 13.64 1.66 34.37 2.69
2920 3450 4.455124 GTGACGTAAAACACTGATTCAGC 58.545 43.478 13.64 0.00 34.37 4.26
2937 3467 1.493772 TGCAGGTTTCTTACGTGACG 58.506 50.000 2.24 2.24 43.62 4.35
2983 3513 0.593128 AGCAACATGTTCACTTCGCC 59.407 50.000 8.48 0.00 0.00 5.54
2984 3514 2.031682 AGAAGCAACATGTTCACTTCGC 60.032 45.455 28.43 20.18 37.63 4.70
3071 3602 3.263425 GGGACAAGTCAGGGTAAATCAGA 59.737 47.826 2.29 0.00 0.00 3.27
3072 3603 3.610911 GGGACAAGTCAGGGTAAATCAG 58.389 50.000 2.29 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.