Multiple sequence alignment - TraesCS1A01G232700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G232700 chr1A 100.000 3895 0 0 1 3895 406153225 406157119 0.000000e+00 7193.0
1 TraesCS1A01G232700 chr1A 95.185 623 29 1 3274 3895 335920910 335921532 0.000000e+00 983.0
2 TraesCS1A01G232700 chr1A 94.505 273 13 2 1998 2268 498801757 498801485 1.670000e-113 420.0
3 TraesCS1A01G232700 chr1A 92.593 162 11 1 1993 2153 36823287 36823126 8.420000e-57 231.0
4 TraesCS1A01G232700 chr1B 92.725 1402 67 16 619 1996 435126591 435127981 0.000000e+00 1991.0
5 TraesCS1A01G232700 chr1B 93.051 993 37 11 2302 3274 435127972 435128952 0.000000e+00 1423.0
6 TraesCS1A01G232700 chr1B 92.578 768 38 9 2353 3110 435104113 435104871 0.000000e+00 1085.0
7 TraesCS1A01G232700 chr1B 92.980 755 34 11 2377 3113 435104102 435103349 0.000000e+00 1083.0
8 TraesCS1A01G232700 chr1B 90.435 345 18 4 142 482 435124321 435124654 1.280000e-119 440.0
9 TraesCS1A01G232700 chr1D 91.427 1423 81 19 608 1994 322267606 322269023 0.000000e+00 1914.0
10 TraesCS1A01G232700 chr1D 86.970 967 70 21 2291 3239 322269007 322269935 0.000000e+00 1037.0
11 TraesCS1A01G232700 chr1D 91.253 423 20 5 117 533 322267128 322267539 9.450000e-156 560.0
12 TraesCS1A01G232700 chr1D 93.038 158 10 1 1997 2153 482914428 482914585 3.030000e-56 230.0
13 TraesCS1A01G232700 chr4A 96.284 619 23 0 3277 3895 164309522 164308904 0.000000e+00 1016.0
14 TraesCS1A01G232700 chr4A 95.315 619 28 1 3277 3895 590814146 590814763 0.000000e+00 981.0
15 TraesCS1A01G232700 chr4A 91.509 106 8 1 16 120 358817859 358817754 1.130000e-30 145.0
16 TraesCS1A01G232700 chr4A 96.970 33 1 0 2271 2303 714831236 714831204 5.440000e-04 56.5
17 TraesCS1A01G232700 chr4A 94.444 36 1 1 2271 2305 23595297 23595262 2.000000e-03 54.7
18 TraesCS1A01G232700 chr7A 95.638 619 27 0 3277 3895 40518001 40517383 0.000000e+00 994.0
19 TraesCS1A01G232700 chr7A 95.638 619 24 2 3277 3895 213207331 213207946 0.000000e+00 990.0
20 TraesCS1A01G232700 chr7A 93.125 160 10 1 1995 2153 668997939 668997780 2.340000e-57 233.0
21 TraesCS1A01G232700 chr7A 96.970 33 1 0 2271 2303 47155977 47155945 5.440000e-04 56.5
22 TraesCS1A01G232700 chr5A 95.153 619 30 0 3277 3895 356661170 356661788 0.000000e+00 977.0
23 TraesCS1A01G232700 chr5A 95.153 619 30 0 3277 3895 640196482 640197100 0.000000e+00 977.0
24 TraesCS1A01G232700 chr5A 90.351 114 10 1 1 113 4667994 4668107 8.720000e-32 148.0
25 TraesCS1A01G232700 chr5A 94.505 91 5 0 37 127 112143110 112143200 1.460000e-29 141.0
26 TraesCS1A01G232700 chr2A 95.153 619 30 0 3277 3895 309020392 309021010 0.000000e+00 977.0
27 TraesCS1A01G232700 chr2A 95.153 619 30 0 3277 3895 757192556 757193174 0.000000e+00 977.0
28 TraesCS1A01G232700 chr5D 91.882 271 15 4 1998 2267 334308356 334308620 4.750000e-99 372.0
29 TraesCS1A01G232700 chr4B 93.750 208 12 1 2001 2207 2687979 2687772 1.050000e-80 311.0
30 TraesCS1A01G232700 chr4B 93.038 158 10 1 1997 2153 24739705 24739862 3.030000e-56 230.0
31 TraesCS1A01G232700 chr2B 93.711 159 8 2 1997 2153 391043561 391043719 1.810000e-58 237.0
32 TraesCS1A01G232700 chr2B 94.167 120 6 1 1 119 383333754 383333873 8.600000e-42 182.0
33 TraesCS1A01G232700 chr2B 94.167 120 6 1 1 119 699218548 699218667 8.600000e-42 182.0
34 TraesCS1A01G232700 chr6B 93.038 158 10 1 1997 2153 566543953 566544110 3.030000e-56 230.0
35 TraesCS1A01G232700 chr6B 93.684 95 6 0 26 120 696872877 696872783 4.060000e-30 143.0
36 TraesCS1A01G232700 chr3B 91.603 131 10 1 2139 2268 424780503 424780633 3.090000e-41 180.0
37 TraesCS1A01G232700 chr3B 96.875 32 1 0 2271 2302 424781231 424781262 2.000000e-03 54.7
38 TraesCS1A01G232700 chr7B 91.429 105 8 1 17 120 694938251 694938355 4.060000e-30 143.0
39 TraesCS1A01G232700 chr7B 96.875 32 1 0 2271 2302 163313501 163313532 2.000000e-03 54.7
40 TraesCS1A01G232700 chr6A 89.720 107 10 1 13 118 571283152 571283258 6.790000e-28 135.0
41 TraesCS1A01G232700 chr3D 89.720 107 10 1 13 118 532142553 532142659 6.790000e-28 135.0
42 TraesCS1A01G232700 chr3D 96.970 33 1 0 2271 2303 582736975 582737007 5.440000e-04 56.5
43 TraesCS1A01G232700 chr3D 96.875 32 1 0 2271 2302 590161419 590161450 2.000000e-03 54.7
44 TraesCS1A01G232700 chr7D 94.737 38 1 1 2271 2307 33656402 33656439 1.510000e-04 58.4
45 TraesCS1A01G232700 chrUn 96.970 33 1 0 2271 2303 381265970 381265938 5.440000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G232700 chr1A 406153225 406157119 3894 False 7193.000000 7193 100.000000 1 3895 1 chr1A.!!$F2 3894
1 TraesCS1A01G232700 chr1A 335920910 335921532 622 False 983.000000 983 95.185000 3274 3895 1 chr1A.!!$F1 621
2 TraesCS1A01G232700 chr1B 435124321 435128952 4631 False 1284.666667 1991 92.070333 142 3274 3 chr1B.!!$F2 3132
3 TraesCS1A01G232700 chr1B 435104113 435104871 758 False 1085.000000 1085 92.578000 2353 3110 1 chr1B.!!$F1 757
4 TraesCS1A01G232700 chr1B 435103349 435104102 753 True 1083.000000 1083 92.980000 2377 3113 1 chr1B.!!$R1 736
5 TraesCS1A01G232700 chr1D 322267128 322269935 2807 False 1170.333333 1914 89.883333 117 3239 3 chr1D.!!$F2 3122
6 TraesCS1A01G232700 chr4A 164308904 164309522 618 True 1016.000000 1016 96.284000 3277 3895 1 chr4A.!!$R2 618
7 TraesCS1A01G232700 chr4A 590814146 590814763 617 False 981.000000 981 95.315000 3277 3895 1 chr4A.!!$F1 618
8 TraesCS1A01G232700 chr7A 40517383 40518001 618 True 994.000000 994 95.638000 3277 3895 1 chr7A.!!$R1 618
9 TraesCS1A01G232700 chr7A 213207331 213207946 615 False 990.000000 990 95.638000 3277 3895 1 chr7A.!!$F1 618
10 TraesCS1A01G232700 chr5A 356661170 356661788 618 False 977.000000 977 95.153000 3277 3895 1 chr5A.!!$F3 618
11 TraesCS1A01G232700 chr5A 640196482 640197100 618 False 977.000000 977 95.153000 3277 3895 1 chr5A.!!$F4 618
12 TraesCS1A01G232700 chr2A 309020392 309021010 618 False 977.000000 977 95.153000 3277 3895 1 chr2A.!!$F1 618
13 TraesCS1A01G232700 chr2A 757192556 757193174 618 False 977.000000 977 95.153000 3277 3895 1 chr2A.!!$F2 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.037734 GGGTGAGGTGGGACGAAAAT 59.962 55.0 0.0 0.0 0.0 1.82 F
472 2271 0.373716 CTTTATGTGTTCTCGCGCCC 59.626 55.0 0.0 0.0 0.0 6.13 F
598 2434 0.723414 CGACTGCACTGCCTGTTATG 59.277 55.0 0.0 0.0 0.0 1.90 F
1462 3310 1.252904 TTGACGGGGAGGTTAGGACG 61.253 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 3497 1.070786 GAAGCGACCCTTGGTGTCA 59.929 57.895 0.00 0.0 35.25 3.58 R
2117 4000 0.034896 ACGAGTCAAATCGGGCACTT 59.965 50.000 4.81 0.0 46.91 3.16 R
2118 4001 0.034896 AACGAGTCAAATCGGGCACT 59.965 50.000 4.81 0.0 46.91 4.40 R
2975 4891 1.065401 CCAGAAAAGTCAAACGCAGCA 59.935 47.619 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.680352 GGCTGACGAGAGGTGGGA 60.680 66.667 0.00 0.00 0.00 4.37
34 35 2.716017 GGCTGACGAGAGGTGGGAG 61.716 68.421 0.00 0.00 0.00 4.30
35 36 2.888863 CTGACGAGAGGTGGGAGC 59.111 66.667 0.00 0.00 0.00 4.70
36 37 1.979155 CTGACGAGAGGTGGGAGCA 60.979 63.158 0.00 0.00 0.00 4.26
37 38 1.533033 TGACGAGAGGTGGGAGCAA 60.533 57.895 0.00 0.00 0.00 3.91
38 39 1.216710 GACGAGAGGTGGGAGCAAG 59.783 63.158 0.00 0.00 0.00 4.01
39 40 1.534235 ACGAGAGGTGGGAGCAAGT 60.534 57.895 0.00 0.00 0.00 3.16
40 41 0.251653 ACGAGAGGTGGGAGCAAGTA 60.252 55.000 0.00 0.00 0.00 2.24
41 42 1.115467 CGAGAGGTGGGAGCAAGTAT 58.885 55.000 0.00 0.00 0.00 2.12
42 43 1.067821 CGAGAGGTGGGAGCAAGTATC 59.932 57.143 0.00 0.00 0.00 2.24
43 44 2.111384 GAGAGGTGGGAGCAAGTATCA 58.889 52.381 0.00 0.00 0.00 2.15
44 45 2.501723 GAGAGGTGGGAGCAAGTATCAA 59.498 50.000 0.00 0.00 0.00 2.57
45 46 2.912956 AGAGGTGGGAGCAAGTATCAAA 59.087 45.455 0.00 0.00 0.00 2.69
46 47 3.330701 AGAGGTGGGAGCAAGTATCAAAA 59.669 43.478 0.00 0.00 0.00 2.44
47 48 4.079253 GAGGTGGGAGCAAGTATCAAAAA 58.921 43.478 0.00 0.00 0.00 1.94
62 63 3.414486 AAAAAGACCGGGTGAGGTG 57.586 52.632 3.30 0.00 46.09 4.00
63 64 0.179001 AAAAAGACCGGGTGAGGTGG 60.179 55.000 3.30 0.00 46.09 4.61
64 65 2.064242 AAAAGACCGGGTGAGGTGGG 62.064 60.000 3.30 0.00 46.09 4.61
65 66 2.976284 AAAGACCGGGTGAGGTGGGA 62.976 60.000 3.30 0.00 46.09 4.37
66 67 3.703127 GACCGGGTGAGGTGGGAC 61.703 72.222 3.30 0.00 46.09 4.46
69 70 3.307906 CGGGTGAGGTGGGACGAA 61.308 66.667 0.00 0.00 0.00 3.85
70 71 2.874664 CGGGTGAGGTGGGACGAAA 61.875 63.158 0.00 0.00 0.00 3.46
71 72 1.452801 GGGTGAGGTGGGACGAAAA 59.547 57.895 0.00 0.00 0.00 2.29
72 73 0.037734 GGGTGAGGTGGGACGAAAAT 59.962 55.000 0.00 0.00 0.00 1.82
73 74 1.279846 GGGTGAGGTGGGACGAAAATA 59.720 52.381 0.00 0.00 0.00 1.40
74 75 2.290450 GGGTGAGGTGGGACGAAAATAA 60.290 50.000 0.00 0.00 0.00 1.40
75 76 3.414269 GGTGAGGTGGGACGAAAATAAA 58.586 45.455 0.00 0.00 0.00 1.40
76 77 3.822167 GGTGAGGTGGGACGAAAATAAAA 59.178 43.478 0.00 0.00 0.00 1.52
77 78 4.461431 GGTGAGGTGGGACGAAAATAAAAT 59.539 41.667 0.00 0.00 0.00 1.82
78 79 5.392703 GGTGAGGTGGGACGAAAATAAAATC 60.393 44.000 0.00 0.00 0.00 2.17
79 80 4.703093 TGAGGTGGGACGAAAATAAAATCC 59.297 41.667 0.00 0.00 0.00 3.01
80 81 3.692593 AGGTGGGACGAAAATAAAATCCG 59.307 43.478 0.00 0.00 0.00 4.18
81 82 3.181494 GGTGGGACGAAAATAAAATCCGG 60.181 47.826 0.00 0.00 0.00 5.14
82 83 3.690628 GTGGGACGAAAATAAAATCCGGA 59.309 43.478 6.61 6.61 0.00 5.14
83 84 4.156373 GTGGGACGAAAATAAAATCCGGAA 59.844 41.667 9.01 0.00 0.00 4.30
84 85 4.156373 TGGGACGAAAATAAAATCCGGAAC 59.844 41.667 9.01 0.00 0.00 3.62
98 99 3.735181 GGAACGCGATCTACCAACT 57.265 52.632 15.93 0.00 0.00 3.16
99 100 1.278238 GGAACGCGATCTACCAACTG 58.722 55.000 15.93 0.00 0.00 3.16
100 101 1.135199 GGAACGCGATCTACCAACTGA 60.135 52.381 15.93 0.00 0.00 3.41
101 102 2.186076 GAACGCGATCTACCAACTGAG 58.814 52.381 15.93 0.00 0.00 3.35
102 103 1.460504 ACGCGATCTACCAACTGAGA 58.539 50.000 15.93 0.00 0.00 3.27
103 104 1.132643 ACGCGATCTACCAACTGAGAC 59.867 52.381 15.93 0.00 0.00 3.36
104 105 1.132453 CGCGATCTACCAACTGAGACA 59.868 52.381 0.00 0.00 0.00 3.41
105 106 2.223595 CGCGATCTACCAACTGAGACAT 60.224 50.000 0.00 0.00 0.00 3.06
106 107 3.735208 CGCGATCTACCAACTGAGACATT 60.735 47.826 0.00 0.00 0.00 2.71
107 108 4.497507 CGCGATCTACCAACTGAGACATTA 60.498 45.833 0.00 0.00 0.00 1.90
108 109 5.348986 GCGATCTACCAACTGAGACATTAA 58.651 41.667 0.00 0.00 0.00 1.40
109 110 5.460419 GCGATCTACCAACTGAGACATTAAG 59.540 44.000 0.00 0.00 0.00 1.85
110 111 6.680625 GCGATCTACCAACTGAGACATTAAGA 60.681 42.308 0.00 0.00 0.00 2.10
111 112 6.915300 CGATCTACCAACTGAGACATTAAGAG 59.085 42.308 0.00 0.00 0.00 2.85
112 113 7.415765 CGATCTACCAACTGAGACATTAAGAGT 60.416 40.741 0.00 0.00 0.00 3.24
113 114 8.824756 ATCTACCAACTGAGACATTAAGAGTA 57.175 34.615 0.00 0.00 0.00 2.59
114 115 8.282455 TCTACCAACTGAGACATTAAGAGTAG 57.718 38.462 0.00 0.00 0.00 2.57
115 116 8.107729 TCTACCAACTGAGACATTAAGAGTAGA 58.892 37.037 0.00 0.00 0.00 2.59
121 122 8.815565 ACTGAGACATTAAGAGTAGAGATTCA 57.184 34.615 0.00 0.00 0.00 2.57
220 223 4.511826 GCCTAGTTGACCTGCAATATGTAC 59.488 45.833 0.00 0.00 39.03 2.90
221 224 5.685075 GCCTAGTTGACCTGCAATATGTACT 60.685 44.000 0.00 0.00 39.03 2.73
222 225 5.986135 CCTAGTTGACCTGCAATATGTACTC 59.014 44.000 0.00 0.00 39.03 2.59
223 226 5.420725 AGTTGACCTGCAATATGTACTCA 57.579 39.130 0.00 0.00 39.03 3.41
224 227 5.423015 AGTTGACCTGCAATATGTACTCAG 58.577 41.667 0.00 0.00 39.03 3.35
237 240 1.135689 GTACTCAGTTTGCATTGCCCG 60.136 52.381 6.12 0.00 0.00 6.13
270 273 4.494199 CCGATCGGTTGCTTATTTCTTGTC 60.494 45.833 26.35 0.00 0.00 3.18
386 393 1.234821 GCGGTCATTCCTGTCAACAA 58.765 50.000 0.00 0.00 0.00 2.83
434 441 5.007234 GGTGTAGTGCATTTTATACGCATGA 59.993 40.000 0.00 0.00 38.07 3.07
453 460 6.200100 GCATGATTCTTGTGATGAGATGTTC 58.800 40.000 0.00 0.00 0.00 3.18
469 476 4.327357 AGATGTTCTTTATGTGTTCTCGCG 59.673 41.667 0.00 0.00 0.00 5.87
472 2271 0.373716 CTTTATGTGTTCTCGCGCCC 59.626 55.000 0.00 0.00 0.00 6.13
500 2299 9.527566 CATAGCCATTTTTAATTCAAAACGTTG 57.472 29.630 0.00 0.00 35.84 4.10
529 2328 7.610305 TGTGTGATATACAAGACTAGTCACTGA 59.390 37.037 24.44 7.73 41.89 3.41
533 2332 9.634021 TGATATACAAGACTAGTCACTGAATCT 57.366 33.333 24.44 8.02 0.00 2.40
536 2335 6.031751 ACAAGACTAGTCACTGAATCTTCC 57.968 41.667 24.44 0.00 0.00 3.46
537 2336 5.777732 ACAAGACTAGTCACTGAATCTTCCT 59.222 40.000 24.44 0.00 0.00 3.36
539 2338 4.953579 AGACTAGTCACTGAATCTTCCTCC 59.046 45.833 24.44 0.00 0.00 4.30
540 2339 4.678256 ACTAGTCACTGAATCTTCCTCCA 58.322 43.478 0.00 0.00 0.00 3.86
541 2340 5.087323 ACTAGTCACTGAATCTTCCTCCAA 58.913 41.667 0.00 0.00 0.00 3.53
542 2341 4.982241 AGTCACTGAATCTTCCTCCAAA 57.018 40.909 0.00 0.00 0.00 3.28
543 2342 5.310409 AGTCACTGAATCTTCCTCCAAAA 57.690 39.130 0.00 0.00 0.00 2.44
579 2415 1.151668 GATCATGACCGCATAGTGGC 58.848 55.000 0.00 0.00 36.54 5.01
587 2423 3.093278 GCATAGTGGCGACTGCAC 58.907 61.111 12.14 0.00 45.35 4.57
589 2425 1.699656 GCATAGTGGCGACTGCACTG 61.700 60.000 12.14 5.12 45.35 3.66
590 2426 1.448540 ATAGTGGCGACTGCACTGC 60.449 57.895 12.14 0.00 45.35 4.40
594 2430 4.996434 GGCGACTGCACTGCCTGT 62.996 66.667 10.98 0.00 45.40 4.00
595 2431 2.974698 GCGACTGCACTGCCTGTT 60.975 61.111 0.00 0.00 42.15 3.16
596 2432 1.667830 GCGACTGCACTGCCTGTTA 60.668 57.895 0.00 0.00 42.15 2.41
597 2433 1.021390 GCGACTGCACTGCCTGTTAT 61.021 55.000 0.00 0.00 42.15 1.89
598 2434 0.723414 CGACTGCACTGCCTGTTATG 59.277 55.000 0.00 0.00 0.00 1.90
599 2435 1.813513 GACTGCACTGCCTGTTATGT 58.186 50.000 0.00 0.00 0.00 2.29
600 2436 2.673893 CGACTGCACTGCCTGTTATGTA 60.674 50.000 0.00 0.00 0.00 2.29
601 2437 2.932614 GACTGCACTGCCTGTTATGTAG 59.067 50.000 0.00 0.00 0.00 2.74
602 2438 2.303022 ACTGCACTGCCTGTTATGTAGT 59.697 45.455 0.00 0.00 33.80 2.73
603 2439 3.244561 ACTGCACTGCCTGTTATGTAGTT 60.245 43.478 0.00 0.00 34.84 2.24
604 2440 3.334691 TGCACTGCCTGTTATGTAGTTC 58.665 45.455 0.00 0.00 0.00 3.01
605 2441 3.007940 TGCACTGCCTGTTATGTAGTTCT 59.992 43.478 0.00 0.00 0.00 3.01
606 2442 4.221924 TGCACTGCCTGTTATGTAGTTCTA 59.778 41.667 0.00 0.00 0.00 2.10
607 2443 5.175859 GCACTGCCTGTTATGTAGTTCTAA 58.824 41.667 0.00 0.00 0.00 2.10
608 2444 5.642063 GCACTGCCTGTTATGTAGTTCTAAA 59.358 40.000 0.00 0.00 0.00 1.85
609 2445 6.316390 GCACTGCCTGTTATGTAGTTCTAAAT 59.684 38.462 0.00 0.00 0.00 1.40
610 2446 7.494625 GCACTGCCTGTTATGTAGTTCTAAATA 59.505 37.037 0.00 0.00 0.00 1.40
611 2447 8.818057 CACTGCCTGTTATGTAGTTCTAAATAC 58.182 37.037 0.00 0.00 0.00 1.89
612 2448 7.985752 ACTGCCTGTTATGTAGTTCTAAATACC 59.014 37.037 0.00 0.00 0.00 2.73
613 2449 7.277396 TGCCTGTTATGTAGTTCTAAATACCC 58.723 38.462 0.00 0.00 0.00 3.69
614 2450 7.126726 TGCCTGTTATGTAGTTCTAAATACCCT 59.873 37.037 0.00 0.00 0.00 4.34
615 2451 7.441458 GCCTGTTATGTAGTTCTAAATACCCTG 59.559 40.741 0.00 0.00 0.00 4.45
616 2452 8.483758 CCTGTTATGTAGTTCTAAATACCCTGT 58.516 37.037 0.00 0.00 0.00 4.00
617 2453 9.530633 CTGTTATGTAGTTCTAAATACCCTGTC 57.469 37.037 0.00 0.00 0.00 3.51
630 2466 3.485463 ACCCTGTCTGTCGATTTCAAA 57.515 42.857 0.00 0.00 0.00 2.69
659 2495 3.249320 CGGATGCAAGTTGGATGAGTATG 59.751 47.826 15.24 0.00 0.00 2.39
660 2496 4.454678 GGATGCAAGTTGGATGAGTATGA 58.545 43.478 15.24 0.00 0.00 2.15
661 2497 4.514441 GGATGCAAGTTGGATGAGTATGAG 59.486 45.833 15.24 0.00 0.00 2.90
662 2498 4.824479 TGCAAGTTGGATGAGTATGAGA 57.176 40.909 4.75 0.00 0.00 3.27
811 2648 9.878599 CAGTTTCGTTCAGTTTCTGTATTATTT 57.121 29.630 0.00 0.00 32.61 1.40
826 2663 7.766738 TCTGTATTATTTATGTGACGCTTCCAA 59.233 33.333 0.00 0.00 0.00 3.53
857 2694 5.511545 GGGAATAATACACCACTGCTCTAGG 60.512 48.000 0.00 0.00 0.00 3.02
881 2718 6.096846 GGGGTAAAGCTTACATCATTTGTGAT 59.903 38.462 0.00 0.00 39.48 3.06
902 2739 1.883926 GTTACCGCCCATTCTGTTGTT 59.116 47.619 0.00 0.00 0.00 2.83
1131 2968 4.269183 TCTTTTCTTTCTGTTGACAGGCA 58.731 39.130 10.97 0.00 43.91 4.75
1263 3111 8.307483 TCAAATTTTAAAGAATAACGGGATGCA 58.693 29.630 0.00 0.00 0.00 3.96
1267 3115 2.779755 AGAATAACGGGATGCACACA 57.220 45.000 0.00 0.00 0.00 3.72
1451 3299 3.064207 CGACATATTATGGTTGACGGGG 58.936 50.000 8.48 0.00 33.60 5.73
1462 3310 1.252904 TTGACGGGGAGGTTAGGACG 61.253 60.000 0.00 0.00 0.00 4.79
1503 3351 7.105588 GCTGGATTCATGGGTAATTTTTCTTT 58.894 34.615 0.00 0.00 0.00 2.52
1542 3412 7.256286 CAGATTTTCCTTTCTTGCTTATGAGG 58.744 38.462 0.00 0.00 0.00 3.86
1547 3417 5.385198 TCCTTTCTTGCTTATGAGGTGTTT 58.615 37.500 0.00 0.00 0.00 2.83
1627 3497 3.875125 GGAGAACTTCCGCCTTCTTTAT 58.125 45.455 0.00 0.00 35.91 1.40
1689 3569 6.318900 GGCTAAGGTAAGCATCTGTACAATTT 59.681 38.462 0.00 0.00 44.64 1.82
1726 3607 4.216257 TGTTCTTGCTTTGTATGCTTCTCC 59.784 41.667 0.00 0.00 0.00 3.71
1748 3629 7.597369 TCTCCGTGATATGGTATTTTTACATCG 59.403 37.037 0.00 0.00 0.00 3.84
1755 3636 5.977171 TGGTATTTTTACATCGATCGGTG 57.023 39.130 26.29 26.29 0.00 4.94
1756 3637 4.271533 TGGTATTTTTACATCGATCGGTGC 59.728 41.667 27.69 8.91 0.00 5.01
1778 3659 5.036737 GCGCTTGTGTGATATGCTAAATTT 58.963 37.500 0.00 0.00 0.00 1.82
1779 3660 5.052172 GCGCTTGTGTGATATGCTAAATTTG 60.052 40.000 0.00 0.00 0.00 2.32
1800 3681 4.950050 TGCCACCGTAATTTTTCATGTTT 58.050 34.783 0.00 0.00 0.00 2.83
1856 3737 4.583871 AGCCAGATTGTTAGAAGTCCAAG 58.416 43.478 0.00 0.00 0.00 3.61
1920 3802 1.275291 CTTCCCTAAAGCCGACTGTCA 59.725 52.381 8.73 0.00 0.00 3.58
1957 3840 9.820229 TCTAGTTATTTGTTTGCACTATTTTCG 57.180 29.630 0.00 0.00 0.00 3.46
1984 3867 4.385358 AAATTCCCAATGCGGTTACATC 57.615 40.909 0.00 0.00 0.00 3.06
1989 3872 3.135712 TCCCAATGCGGTTACATCTGTAT 59.864 43.478 0.00 0.00 0.00 2.29
1994 3877 6.260050 CCAATGCGGTTACATCTGTATACTTT 59.740 38.462 4.17 0.00 0.00 2.66
1995 3878 6.844696 ATGCGGTTACATCTGTATACTTTG 57.155 37.500 4.17 2.05 0.00 2.77
1996 3879 5.113383 TGCGGTTACATCTGTATACTTTGG 58.887 41.667 4.17 0.00 0.00 3.28
1997 3880 5.105269 TGCGGTTACATCTGTATACTTTGGA 60.105 40.000 4.17 0.00 0.00 3.53
1998 3881 5.462398 GCGGTTACATCTGTATACTTTGGAG 59.538 44.000 4.17 0.00 0.00 3.86
1999 3882 6.570692 CGGTTACATCTGTATACTTTGGAGT 58.429 40.000 4.17 0.00 39.97 3.85
2000 3883 7.682741 GCGGTTACATCTGTATACTTTGGAGTA 60.683 40.741 4.17 0.00 42.30 2.59
2038 3921 2.557317 ACAATTCGTGAAACCGTGTCT 58.443 42.857 0.00 0.00 0.00 3.41
2039 3922 3.719924 ACAATTCGTGAAACCGTGTCTA 58.280 40.909 0.00 0.00 0.00 2.59
2040 3923 4.312443 ACAATTCGTGAAACCGTGTCTAT 58.688 39.130 0.00 0.00 0.00 1.98
2041 3924 5.472148 ACAATTCGTGAAACCGTGTCTATA 58.528 37.500 0.00 0.00 0.00 1.31
2042 3925 5.927689 ACAATTCGTGAAACCGTGTCTATAA 59.072 36.000 0.00 0.00 0.00 0.98
2043 3926 6.424509 ACAATTCGTGAAACCGTGTCTATAAA 59.575 34.615 0.00 0.00 0.00 1.40
2044 3927 5.827568 TTCGTGAAACCGTGTCTATAAAC 57.172 39.130 0.00 0.00 0.00 2.01
2045 3928 5.125100 TCGTGAAACCGTGTCTATAAACT 57.875 39.130 0.00 0.00 0.00 2.66
2046 3929 6.252967 TCGTGAAACCGTGTCTATAAACTA 57.747 37.500 0.00 0.00 0.00 2.24
2047 3930 6.086222 TCGTGAAACCGTGTCTATAAACTAC 58.914 40.000 0.00 0.00 0.00 2.73
2048 3931 5.287035 CGTGAAACCGTGTCTATAAACTACC 59.713 44.000 0.00 0.00 0.00 3.18
2049 3932 6.158598 GTGAAACCGTGTCTATAAACTACCA 58.841 40.000 0.00 0.00 0.00 3.25
2050 3933 6.089954 GTGAAACCGTGTCTATAAACTACCAC 59.910 42.308 0.00 0.00 0.00 4.16
2051 3934 5.990120 AACCGTGTCTATAAACTACCACT 57.010 39.130 0.00 0.00 0.00 4.00
2052 3935 5.990120 ACCGTGTCTATAAACTACCACTT 57.010 39.130 0.00 0.00 0.00 3.16
2053 3936 6.350629 ACCGTGTCTATAAACTACCACTTT 57.649 37.500 0.00 0.00 0.00 2.66
2054 3937 7.466746 ACCGTGTCTATAAACTACCACTTTA 57.533 36.000 0.00 0.00 0.00 1.85
2055 3938 7.315890 ACCGTGTCTATAAACTACCACTTTAC 58.684 38.462 0.00 0.00 0.00 2.01
2056 3939 7.039784 ACCGTGTCTATAAACTACCACTTTACA 60.040 37.037 0.00 0.00 0.00 2.41
2057 3940 7.814107 CCGTGTCTATAAACTACCACTTTACAA 59.186 37.037 0.00 0.00 0.00 2.41
2058 3941 9.195411 CGTGTCTATAAACTACCACTTTACAAA 57.805 33.333 0.00 0.00 0.00 2.83
2065 3948 7.764695 AAACTACCACTTTACAAATTTGTGC 57.235 32.000 29.72 0.00 42.31 4.57
2066 3949 5.516090 ACTACCACTTTACAAATTTGTGCG 58.484 37.500 29.72 19.89 42.31 5.34
2067 3950 4.640789 ACCACTTTACAAATTTGTGCGA 57.359 36.364 29.72 14.96 42.31 5.10
2068 3951 5.000012 ACCACTTTACAAATTTGTGCGAA 58.000 34.783 29.72 20.05 42.31 4.70
2069 3952 5.411781 ACCACTTTACAAATTTGTGCGAAA 58.588 33.333 29.72 21.12 42.31 3.46
2070 3953 5.869888 ACCACTTTACAAATTTGTGCGAAAA 59.130 32.000 29.72 20.82 42.31 2.29
2071 3954 6.181944 CCACTTTACAAATTTGTGCGAAAAC 58.818 36.000 29.72 0.00 42.31 2.43
2072 3955 6.035542 CCACTTTACAAATTTGTGCGAAAACT 59.964 34.615 29.72 10.99 42.31 2.66
2073 3956 7.221067 CCACTTTACAAATTTGTGCGAAAACTA 59.779 33.333 29.72 7.25 42.31 2.24
2074 3957 8.047859 CACTTTACAAATTTGTGCGAAAACTAC 58.952 33.333 29.72 0.00 42.31 2.73
2075 3958 7.971722 ACTTTACAAATTTGTGCGAAAACTACT 59.028 29.630 29.72 4.44 42.31 2.57
2076 3959 9.440784 CTTTACAAATTTGTGCGAAAACTACTA 57.559 29.630 29.72 5.85 42.31 1.82
2077 3960 9.953697 TTTACAAATTTGTGCGAAAACTACTAT 57.046 25.926 29.72 3.42 42.31 2.12
2078 3961 9.953697 TTACAAATTTGTGCGAAAACTACTATT 57.046 25.926 29.72 3.06 42.31 1.73
2079 3962 8.865590 ACAAATTTGTGCGAAAACTACTATTT 57.134 26.923 22.71 0.00 40.49 1.40
2080 3963 9.308318 ACAAATTTGTGCGAAAACTACTATTTT 57.692 25.926 22.71 0.00 40.49 1.82
2122 4005 9.341899 CTAAAAACTACCATGTATGAAAAGTGC 57.658 33.333 0.00 0.00 0.00 4.40
2123 4006 5.897377 AACTACCATGTATGAAAAGTGCC 57.103 39.130 0.00 0.00 0.00 5.01
2124 4007 4.270008 ACTACCATGTATGAAAAGTGCCC 58.730 43.478 0.00 0.00 0.00 5.36
2125 4008 2.091541 ACCATGTATGAAAAGTGCCCG 58.908 47.619 0.00 0.00 0.00 6.13
2126 4009 2.290641 ACCATGTATGAAAAGTGCCCGA 60.291 45.455 0.00 0.00 0.00 5.14
2127 4010 2.951642 CCATGTATGAAAAGTGCCCGAT 59.048 45.455 0.00 0.00 0.00 4.18
2128 4011 3.381272 CCATGTATGAAAAGTGCCCGATT 59.619 43.478 0.00 0.00 0.00 3.34
2129 4012 4.142182 CCATGTATGAAAAGTGCCCGATTT 60.142 41.667 0.00 0.00 0.00 2.17
2130 4013 4.433186 TGTATGAAAAGTGCCCGATTTG 57.567 40.909 0.00 0.00 0.00 2.32
2131 4014 4.075682 TGTATGAAAAGTGCCCGATTTGA 58.924 39.130 0.00 0.00 0.00 2.69
2132 4015 3.575965 ATGAAAAGTGCCCGATTTGAC 57.424 42.857 0.00 0.00 0.00 3.18
2133 4016 2.582052 TGAAAAGTGCCCGATTTGACT 58.418 42.857 0.00 0.00 0.00 3.41
2134 4017 2.552315 TGAAAAGTGCCCGATTTGACTC 59.448 45.455 0.00 0.00 0.00 3.36
2135 4018 1.156736 AAAGTGCCCGATTTGACTCG 58.843 50.000 0.00 0.00 38.37 4.18
2136 4019 0.034896 AAGTGCCCGATTTGACTCGT 59.965 50.000 0.00 0.00 36.93 4.18
2137 4020 0.034896 AGTGCCCGATTTGACTCGTT 59.965 50.000 0.00 0.00 36.93 3.85
2138 4021 0.872388 GTGCCCGATTTGACTCGTTT 59.128 50.000 0.00 0.00 36.93 3.60
2139 4022 2.070783 GTGCCCGATTTGACTCGTTTA 58.929 47.619 0.00 0.00 36.93 2.01
2140 4023 2.481185 GTGCCCGATTTGACTCGTTTAA 59.519 45.455 0.00 0.00 36.93 1.52
2141 4024 3.058777 GTGCCCGATTTGACTCGTTTAAA 60.059 43.478 0.00 0.00 36.93 1.52
2142 4025 3.058777 TGCCCGATTTGACTCGTTTAAAC 60.059 43.478 8.35 8.35 36.93 2.01
2143 4026 3.187842 GCCCGATTTGACTCGTTTAAACT 59.812 43.478 16.01 0.00 36.93 2.66
2144 4027 4.668431 GCCCGATTTGACTCGTTTAAACTC 60.668 45.833 16.01 7.79 36.93 3.01
2145 4028 4.433805 CCCGATTTGACTCGTTTAAACTCG 60.434 45.833 16.01 14.11 36.93 4.18
2146 4029 4.383649 CCGATTTGACTCGTTTAAACTCGA 59.616 41.667 18.34 10.94 36.93 4.04
2147 4030 5.061808 CCGATTTGACTCGTTTAAACTCGAT 59.938 40.000 18.34 8.36 36.93 3.59
2148 4031 6.400727 CCGATTTGACTCGTTTAAACTCGATT 60.401 38.462 18.34 7.18 36.93 3.34
2149 4032 7.201376 CCGATTTGACTCGTTTAAACTCGATTA 60.201 37.037 18.34 1.72 36.93 1.75
2150 4033 8.318876 CGATTTGACTCGTTTAAACTCGATTAT 58.681 33.333 16.01 2.37 35.57 1.28
2151 4034 9.409949 GATTTGACTCGTTTAAACTCGATTATG 57.590 33.333 16.01 1.22 35.57 1.90
2152 4035 8.523523 TTTGACTCGTTTAAACTCGATTATGA 57.476 30.769 16.01 2.98 35.57 2.15
2153 4036 8.523523 TTGACTCGTTTAAACTCGATTATGAA 57.476 30.769 16.01 0.00 35.57 2.57
2154 4037 8.523523 TGACTCGTTTAAACTCGATTATGAAA 57.476 30.769 16.01 0.00 35.57 2.69
2155 4038 8.980610 TGACTCGTTTAAACTCGATTATGAAAA 58.019 29.630 16.01 0.00 35.57 2.29
2156 4039 9.801714 GACTCGTTTAAACTCGATTATGAAAAA 57.198 29.630 16.01 0.00 35.57 1.94
2176 4059 6.779115 AAAAATAAAAACGCAATCAGGTCC 57.221 33.333 0.00 0.00 0.00 4.46
2177 4060 4.450082 AATAAAAACGCAATCAGGTCCC 57.550 40.909 0.00 0.00 0.00 4.46
2178 4061 1.995376 AAAAACGCAATCAGGTCCCT 58.005 45.000 0.00 0.00 0.00 4.20
2179 4062 1.247567 AAAACGCAATCAGGTCCCTG 58.752 50.000 7.02 7.02 44.86 4.45
2180 4063 1.244019 AAACGCAATCAGGTCCCTGC 61.244 55.000 8.53 0.00 43.31 4.85
2181 4064 2.046023 CGCAATCAGGTCCCTGCA 60.046 61.111 8.53 0.00 43.31 4.41
2182 4065 1.675310 CGCAATCAGGTCCCTGCAA 60.675 57.895 8.53 0.00 43.31 4.08
2183 4066 1.243342 CGCAATCAGGTCCCTGCAAA 61.243 55.000 8.53 0.00 43.31 3.68
2184 4067 0.529378 GCAATCAGGTCCCTGCAAAG 59.471 55.000 8.53 0.37 43.31 2.77
2185 4068 1.887956 GCAATCAGGTCCCTGCAAAGA 60.888 52.381 8.53 0.00 43.31 2.52
2186 4069 1.815003 CAATCAGGTCCCTGCAAAGAC 59.185 52.381 8.53 7.15 43.31 3.01
2187 4070 1.067295 ATCAGGTCCCTGCAAAGACA 58.933 50.000 15.51 0.00 43.31 3.41
2188 4071 0.843309 TCAGGTCCCTGCAAAGACAA 59.157 50.000 15.51 0.95 43.31 3.18
2189 4072 1.202806 TCAGGTCCCTGCAAAGACAAG 60.203 52.381 15.51 8.54 43.31 3.16
2190 4073 0.111253 AGGTCCCTGCAAAGACAAGG 59.889 55.000 15.51 0.00 34.58 3.61
2191 4074 0.110486 GGTCCCTGCAAAGACAAGGA 59.890 55.000 15.51 0.00 34.58 3.36
2192 4075 1.478654 GGTCCCTGCAAAGACAAGGAA 60.479 52.381 15.51 0.00 31.97 3.36
2193 4076 2.306847 GTCCCTGCAAAGACAAGGAAA 58.693 47.619 10.19 0.00 31.97 3.13
2194 4077 2.693074 GTCCCTGCAAAGACAAGGAAAA 59.307 45.455 10.19 0.00 31.97 2.29
2195 4078 3.132111 GTCCCTGCAAAGACAAGGAAAAA 59.868 43.478 10.19 0.00 31.97 1.94
2212 4095 2.683211 AAAAGCAATCAGGTCCCTGT 57.317 45.000 12.88 0.00 43.96 4.00
2213 4096 2.683211 AAAGCAATCAGGTCCCTGTT 57.317 45.000 12.88 2.19 43.96 3.16
2214 4097 1.915141 AAGCAATCAGGTCCCTGTTG 58.085 50.000 12.88 15.54 43.96 3.33
2215 4098 1.885871 GCAATCAGGTCCCTGTTGC 59.114 57.895 24.38 24.38 44.64 4.17
2216 4099 1.598701 GCAATCAGGTCCCTGTTGCC 61.599 60.000 26.23 16.49 44.83 4.52
2217 4100 1.002134 AATCAGGTCCCTGTTGCCG 60.002 57.895 12.88 0.00 43.96 5.69
2218 4101 1.779061 AATCAGGTCCCTGTTGCCGT 61.779 55.000 12.88 0.00 43.96 5.68
2219 4102 2.185310 ATCAGGTCCCTGTTGCCGTC 62.185 60.000 12.88 0.00 43.96 4.79
2220 4103 2.847234 AGGTCCCTGTTGCCGTCA 60.847 61.111 0.00 0.00 0.00 4.35
2221 4104 2.112297 GGTCCCTGTTGCCGTCAA 59.888 61.111 0.00 0.00 0.00 3.18
2222 4105 1.966451 GGTCCCTGTTGCCGTCAAG 60.966 63.158 0.00 0.00 31.93 3.02
2223 4106 2.281484 TCCCTGTTGCCGTCAAGC 60.281 61.111 0.00 0.00 31.93 4.01
2224 4107 2.281761 CCCTGTTGCCGTCAAGCT 60.282 61.111 0.00 0.00 31.93 3.74
2225 4108 2.328099 CCCTGTTGCCGTCAAGCTC 61.328 63.158 0.00 0.00 31.93 4.09
2226 4109 1.597854 CCTGTTGCCGTCAAGCTCA 60.598 57.895 0.00 0.00 31.93 4.26
2227 4110 0.957395 CCTGTTGCCGTCAAGCTCAT 60.957 55.000 0.00 0.00 31.93 2.90
2228 4111 0.877071 CTGTTGCCGTCAAGCTCATT 59.123 50.000 0.00 0.00 31.93 2.57
2229 4112 0.874390 TGTTGCCGTCAAGCTCATTC 59.126 50.000 0.00 0.00 31.93 2.67
2230 4113 0.169009 GTTGCCGTCAAGCTCATTCC 59.831 55.000 0.00 0.00 31.93 3.01
2231 4114 0.960364 TTGCCGTCAAGCTCATTCCC 60.960 55.000 0.00 0.00 0.00 3.97
2232 4115 2.464459 GCCGTCAAGCTCATTCCCG 61.464 63.158 0.00 0.00 0.00 5.14
2233 4116 2.464459 CCGTCAAGCTCATTCCCGC 61.464 63.158 0.00 0.00 0.00 6.13
2234 4117 2.464459 CGTCAAGCTCATTCCCGCC 61.464 63.158 0.00 0.00 0.00 6.13
2235 4118 1.078143 GTCAAGCTCATTCCCGCCT 60.078 57.895 0.00 0.00 0.00 5.52
2236 4119 1.092345 GTCAAGCTCATTCCCGCCTC 61.092 60.000 0.00 0.00 0.00 4.70
2237 4120 1.821332 CAAGCTCATTCCCGCCTCC 60.821 63.158 0.00 0.00 0.00 4.30
2238 4121 3.391665 AAGCTCATTCCCGCCTCCG 62.392 63.158 0.00 0.00 0.00 4.63
2240 4123 4.918201 CTCATTCCCGCCTCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
2242 4125 4.489771 CATTCCCGCCTCCGCCTT 62.490 66.667 0.00 0.00 0.00 4.35
2243 4126 4.489771 ATTCCCGCCTCCGCCTTG 62.490 66.667 0.00 0.00 0.00 3.61
2248 4131 4.899239 CGCCTCCGCCTTGGCTAG 62.899 72.222 10.12 6.94 46.42 3.42
2250 4133 3.785859 CCTCCGCCTTGGCTAGCA 61.786 66.667 18.24 0.00 37.80 3.49
2251 4134 2.202987 CTCCGCCTTGGCTAGCAG 60.203 66.667 18.24 6.04 37.80 4.24
2252 4135 3.746949 CTCCGCCTTGGCTAGCAGG 62.747 68.421 18.24 16.56 37.80 4.85
2253 4136 4.101448 CCGCCTTGGCTAGCAGGT 62.101 66.667 18.24 0.00 32.06 4.00
2254 4137 2.512515 CGCCTTGGCTAGCAGGTC 60.513 66.667 18.24 10.53 32.06 3.85
2255 4138 2.512515 GCCTTGGCTAGCAGGTCG 60.513 66.667 18.24 0.23 32.06 4.79
2256 4139 2.512515 CCTTGGCTAGCAGGTCGC 60.513 66.667 18.24 0.00 42.91 5.19
2257 4140 2.512515 CTTGGCTAGCAGGTCGCC 60.513 66.667 18.24 8.22 44.04 5.54
2258 4141 4.451150 TTGGCTAGCAGGTCGCCG 62.451 66.667 18.24 0.00 46.67 6.46
2261 4144 4.143333 GCTAGCAGGTCGCCGGAA 62.143 66.667 10.63 0.00 44.04 4.30
2262 4145 2.105128 CTAGCAGGTCGCCGGAAG 59.895 66.667 5.05 0.00 44.04 3.46
2263 4146 2.361992 TAGCAGGTCGCCGGAAGA 60.362 61.111 5.05 0.00 44.04 2.87
2264 4147 1.739338 CTAGCAGGTCGCCGGAAGAT 61.739 60.000 5.05 0.00 44.04 2.40
2265 4148 2.016393 TAGCAGGTCGCCGGAAGATG 62.016 60.000 5.05 0.82 44.04 2.90
2266 4149 2.892425 CAGGTCGCCGGAAGATGC 60.892 66.667 5.05 0.00 0.00 3.91
2267 4150 4.162690 AGGTCGCCGGAAGATGCC 62.163 66.667 5.05 2.04 0.00 4.40
2268 4151 4.467084 GGTCGCCGGAAGATGCCA 62.467 66.667 5.05 0.00 0.00 4.92
2269 4152 2.435938 GTCGCCGGAAGATGCCAA 60.436 61.111 5.05 0.00 0.00 4.52
2270 4153 2.038269 GTCGCCGGAAGATGCCAAA 61.038 57.895 5.05 0.00 0.00 3.28
2271 4154 2.038269 TCGCCGGAAGATGCCAAAC 61.038 57.895 5.05 0.00 0.00 2.93
2272 4155 2.485122 GCCGGAAGATGCCAAACG 59.515 61.111 5.05 0.00 0.00 3.60
2273 4156 2.038269 GCCGGAAGATGCCAAACGA 61.038 57.895 5.05 0.00 0.00 3.85
2274 4157 1.582610 GCCGGAAGATGCCAAACGAA 61.583 55.000 5.05 0.00 0.00 3.85
2275 4158 1.094785 CCGGAAGATGCCAAACGAAT 58.905 50.000 0.00 0.00 0.00 3.34
2276 4159 1.472480 CCGGAAGATGCCAAACGAATT 59.528 47.619 0.00 0.00 0.00 2.17
2277 4160 2.518949 CGGAAGATGCCAAACGAATTG 58.481 47.619 0.00 0.00 38.84 2.32
2278 4161 2.095263 CGGAAGATGCCAAACGAATTGT 60.095 45.455 0.00 0.00 37.32 2.71
2279 4162 3.244976 GGAAGATGCCAAACGAATTGTG 58.755 45.455 0.00 0.00 37.32 3.33
2280 4163 3.244976 GAAGATGCCAAACGAATTGTGG 58.755 45.455 0.00 0.00 37.32 4.17
2281 4164 2.238521 AGATGCCAAACGAATTGTGGT 58.761 42.857 0.00 0.00 37.32 4.16
2282 4165 3.417101 AGATGCCAAACGAATTGTGGTA 58.583 40.909 0.00 0.00 37.32 3.25
2283 4166 3.440173 AGATGCCAAACGAATTGTGGTAG 59.560 43.478 0.00 0.00 37.32 3.18
2284 4167 2.577700 TGCCAAACGAATTGTGGTAGT 58.422 42.857 0.00 0.00 37.32 2.73
2285 4168 2.952978 TGCCAAACGAATTGTGGTAGTT 59.047 40.909 0.00 0.00 37.32 2.24
2286 4169 3.381908 TGCCAAACGAATTGTGGTAGTTT 59.618 39.130 0.00 0.00 37.32 2.66
2287 4170 4.142138 TGCCAAACGAATTGTGGTAGTTTT 60.142 37.500 0.00 0.00 37.32 2.43
2288 4171 4.806775 GCCAAACGAATTGTGGTAGTTTTT 59.193 37.500 0.00 0.00 37.32 1.94
2407 4290 7.092137 TGATTATCTTGTGGCTTGAGAATTG 57.908 36.000 0.00 0.00 0.00 2.32
2591 4481 3.501828 CCAACGACACCATCAAGATTGAA 59.498 43.478 0.00 0.00 41.13 2.69
2597 4487 4.927049 ACACCATCAAGATTGAACTGGAT 58.073 39.130 17.89 6.58 38.87 3.41
2642 4532 3.818773 TCAAGTTTGAGGTCGGGAATTTC 59.181 43.478 0.00 0.00 32.50 2.17
2969 4885 0.036010 CCTGTTGGAGACGAGCCATT 60.036 55.000 0.00 0.00 34.90 3.16
2973 4889 3.745799 TGTTGGAGACGAGCCATTTTTA 58.254 40.909 0.00 0.00 34.90 1.52
2974 4890 3.751175 TGTTGGAGACGAGCCATTTTTAG 59.249 43.478 0.00 0.00 34.90 1.85
2975 4891 3.695830 TGGAGACGAGCCATTTTTAGT 57.304 42.857 0.00 0.00 0.00 2.24
2976 4892 3.334691 TGGAGACGAGCCATTTTTAGTG 58.665 45.455 0.00 0.00 0.00 2.74
2977 4893 2.096013 GGAGACGAGCCATTTTTAGTGC 59.904 50.000 0.00 0.00 0.00 4.40
2978 4894 3.003480 GAGACGAGCCATTTTTAGTGCT 58.997 45.455 0.00 0.00 36.62 4.40
2979 4895 2.744202 AGACGAGCCATTTTTAGTGCTG 59.256 45.455 0.00 0.00 33.41 4.41
2980 4896 1.200020 ACGAGCCATTTTTAGTGCTGC 59.800 47.619 0.00 0.00 33.41 5.25
2981 4897 1.791555 CGAGCCATTTTTAGTGCTGCG 60.792 52.381 0.00 0.00 33.41 5.18
2982 4898 1.200020 GAGCCATTTTTAGTGCTGCGT 59.800 47.619 0.00 0.00 33.41 5.24
2983 4899 1.613437 AGCCATTTTTAGTGCTGCGTT 59.387 42.857 0.00 0.00 31.70 4.84
2984 4900 2.035832 AGCCATTTTTAGTGCTGCGTTT 59.964 40.909 0.00 0.00 31.70 3.60
2985 4901 2.155539 GCCATTTTTAGTGCTGCGTTTG 59.844 45.455 0.00 0.00 0.00 2.93
2986 4902 3.637432 CCATTTTTAGTGCTGCGTTTGA 58.363 40.909 0.00 0.00 0.00 2.69
2987 4903 3.425193 CCATTTTTAGTGCTGCGTTTGAC 59.575 43.478 0.00 0.00 0.00 3.18
2988 4904 4.290155 CATTTTTAGTGCTGCGTTTGACT 58.710 39.130 0.00 0.00 0.00 3.41
2989 4905 4.364415 TTTTTAGTGCTGCGTTTGACTT 57.636 36.364 0.00 0.00 0.00 3.01
2990 4906 4.364415 TTTTAGTGCTGCGTTTGACTTT 57.636 36.364 0.00 0.00 0.00 2.66
2991 4907 4.364415 TTTAGTGCTGCGTTTGACTTTT 57.636 36.364 0.00 0.00 0.00 2.27
2992 4908 2.475200 AGTGCTGCGTTTGACTTTTC 57.525 45.000 0.00 0.00 0.00 2.29
2993 4909 2.017049 AGTGCTGCGTTTGACTTTTCT 58.983 42.857 0.00 0.00 0.00 2.52
2994 4910 2.111756 GTGCTGCGTTTGACTTTTCTG 58.888 47.619 0.00 0.00 0.00 3.02
2995 4911 1.065401 TGCTGCGTTTGACTTTTCTGG 59.935 47.619 0.00 0.00 0.00 3.86
2996 4912 1.600413 GCTGCGTTTGACTTTTCTGGG 60.600 52.381 0.00 0.00 0.00 4.45
2997 4913 1.946768 CTGCGTTTGACTTTTCTGGGA 59.053 47.619 0.00 0.00 0.00 4.37
2998 4914 1.946768 TGCGTTTGACTTTTCTGGGAG 59.053 47.619 0.00 0.00 0.00 4.30
2999 4915 1.335051 GCGTTTGACTTTTCTGGGAGC 60.335 52.381 0.00 0.00 0.00 4.70
3000 4916 1.946768 CGTTTGACTTTTCTGGGAGCA 59.053 47.619 0.00 0.00 0.00 4.26
3001 4917 2.554032 CGTTTGACTTTTCTGGGAGCAT 59.446 45.455 0.00 0.00 0.00 3.79
3002 4918 3.004734 CGTTTGACTTTTCTGGGAGCATT 59.995 43.478 0.00 0.00 0.00 3.56
3157 5115 1.406898 GAAAATCTAAGCTGCCCTGCC 59.593 52.381 0.00 0.00 0.00 4.85
3229 5193 0.034337 GTGGACTTTGAGGCGGTACA 59.966 55.000 0.00 0.00 0.00 2.90
3262 5231 4.027556 GCAAATACACGTGTTTTCGAATCG 59.972 41.667 28.55 13.43 34.70 3.34
3274 5243 0.888619 TCGAATCGTGCAGGAGAACT 59.111 50.000 15.18 0.00 0.00 3.01
3275 5244 2.089201 TCGAATCGTGCAGGAGAACTA 58.911 47.619 15.18 0.00 0.00 2.24
3474 5444 7.766278 GCATTGTAAGATAGGAAAGAAGAGACA 59.234 37.037 0.00 0.00 0.00 3.41
3483 5453 1.859302 AAGAAGAGACAGAGGCGGAT 58.141 50.000 0.00 0.00 0.00 4.18
3509 5479 3.394836 GAGCCAGCCTCGGGACTT 61.395 66.667 0.00 0.00 0.00 3.01
3580 5551 3.868754 GCGGTTTAGGGACAGAGAACAAT 60.869 47.826 0.00 0.00 0.00 2.71
3804 5775 2.218603 GACAATTCCACGACAGTTGGT 58.781 47.619 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.062466 CCACCTCTCGTCAGCCGA 61.062 66.667 0.00 0.00 45.00 5.54
15 16 4.135153 CCCACCTCTCGTCAGCCG 62.135 72.222 0.00 0.00 38.13 5.52
16 17 2.680352 TCCCACCTCTCGTCAGCC 60.680 66.667 0.00 0.00 0.00 4.85
17 18 2.888863 CTCCCACCTCTCGTCAGC 59.111 66.667 0.00 0.00 0.00 4.26
18 19 1.536073 TTGCTCCCACCTCTCGTCAG 61.536 60.000 0.00 0.00 0.00 3.51
19 20 1.533033 TTGCTCCCACCTCTCGTCA 60.533 57.895 0.00 0.00 0.00 4.35
20 21 1.216710 CTTGCTCCCACCTCTCGTC 59.783 63.158 0.00 0.00 0.00 4.20
21 22 0.251653 TACTTGCTCCCACCTCTCGT 60.252 55.000 0.00 0.00 0.00 4.18
22 23 1.067821 GATACTTGCTCCCACCTCTCG 59.932 57.143 0.00 0.00 0.00 4.04
23 24 2.111384 TGATACTTGCTCCCACCTCTC 58.889 52.381 0.00 0.00 0.00 3.20
24 25 2.254152 TGATACTTGCTCCCACCTCT 57.746 50.000 0.00 0.00 0.00 3.69
25 26 3.350219 TTTGATACTTGCTCCCACCTC 57.650 47.619 0.00 0.00 0.00 3.85
26 27 3.806949 TTTTGATACTTGCTCCCACCT 57.193 42.857 0.00 0.00 0.00 4.00
44 45 0.179001 CCACCTCACCCGGTCTTTTT 60.179 55.000 0.00 0.00 34.29 1.94
45 46 1.454539 CCACCTCACCCGGTCTTTT 59.545 57.895 0.00 0.00 34.29 2.27
46 47 2.526046 CCCACCTCACCCGGTCTTT 61.526 63.158 0.00 0.00 34.29 2.52
47 48 2.928396 CCCACCTCACCCGGTCTT 60.928 66.667 0.00 0.00 34.29 3.01
48 49 3.923645 TCCCACCTCACCCGGTCT 61.924 66.667 0.00 0.00 34.29 3.85
49 50 3.703127 GTCCCACCTCACCCGGTC 61.703 72.222 0.00 0.00 34.29 4.79
52 53 2.386064 TTTTCGTCCCACCTCACCCG 62.386 60.000 0.00 0.00 0.00 5.28
53 54 0.037734 ATTTTCGTCCCACCTCACCC 59.962 55.000 0.00 0.00 0.00 4.61
54 55 2.773993 TATTTTCGTCCCACCTCACC 57.226 50.000 0.00 0.00 0.00 4.02
55 56 5.392703 GGATTTTATTTTCGTCCCACCTCAC 60.393 44.000 0.00 0.00 0.00 3.51
56 57 4.703093 GGATTTTATTTTCGTCCCACCTCA 59.297 41.667 0.00 0.00 0.00 3.86
57 58 4.201881 CGGATTTTATTTTCGTCCCACCTC 60.202 45.833 0.00 0.00 0.00 3.85
58 59 3.692593 CGGATTTTATTTTCGTCCCACCT 59.307 43.478 0.00 0.00 0.00 4.00
59 60 3.181494 CCGGATTTTATTTTCGTCCCACC 60.181 47.826 0.00 0.00 0.00 4.61
60 61 3.690628 TCCGGATTTTATTTTCGTCCCAC 59.309 43.478 0.00 0.00 0.00 4.61
61 62 3.952931 TCCGGATTTTATTTTCGTCCCA 58.047 40.909 0.00 0.00 0.00 4.37
62 63 4.665212 GTTCCGGATTTTATTTTCGTCCC 58.335 43.478 4.15 0.00 0.00 4.46
63 64 4.336932 CGTTCCGGATTTTATTTTCGTCC 58.663 43.478 4.15 0.00 0.00 4.79
64 65 3.782369 GCGTTCCGGATTTTATTTTCGTC 59.218 43.478 4.15 0.00 0.00 4.20
65 66 3.725600 CGCGTTCCGGATTTTATTTTCGT 60.726 43.478 4.15 0.00 0.00 3.85
66 67 2.774074 CGCGTTCCGGATTTTATTTTCG 59.226 45.455 4.15 0.90 0.00 3.46
67 68 4.006026 TCGCGTTCCGGATTTTATTTTC 57.994 40.909 4.15 0.00 37.59 2.29
68 69 4.334481 AGATCGCGTTCCGGATTTTATTTT 59.666 37.500 4.15 0.00 37.59 1.82
69 70 3.875134 AGATCGCGTTCCGGATTTTATTT 59.125 39.130 4.15 0.00 37.59 1.40
70 71 3.463944 AGATCGCGTTCCGGATTTTATT 58.536 40.909 4.15 0.00 37.59 1.40
71 72 3.107642 AGATCGCGTTCCGGATTTTAT 57.892 42.857 4.15 0.00 37.59 1.40
72 73 2.589798 AGATCGCGTTCCGGATTTTA 57.410 45.000 4.15 0.00 37.59 1.52
73 74 2.199236 GTAGATCGCGTTCCGGATTTT 58.801 47.619 4.15 0.00 37.59 1.82
74 75 1.537562 GGTAGATCGCGTTCCGGATTT 60.538 52.381 4.15 0.00 37.59 2.17
75 76 0.031721 GGTAGATCGCGTTCCGGATT 59.968 55.000 4.15 0.00 37.59 3.01
76 77 1.105167 TGGTAGATCGCGTTCCGGAT 61.105 55.000 4.15 0.00 37.59 4.18
77 78 1.314534 TTGGTAGATCGCGTTCCGGA 61.315 55.000 13.36 0.00 37.59 5.14
78 79 1.140161 TTGGTAGATCGCGTTCCGG 59.860 57.895 13.36 0.00 37.59 5.14
79 80 0.179145 AGTTGGTAGATCGCGTTCCG 60.179 55.000 13.36 0.00 38.61 4.30
80 81 1.135199 TCAGTTGGTAGATCGCGTTCC 60.135 52.381 13.36 7.11 0.00 3.62
81 82 2.159421 TCTCAGTTGGTAGATCGCGTTC 60.159 50.000 5.77 7.71 0.00 3.95
82 83 1.816835 TCTCAGTTGGTAGATCGCGTT 59.183 47.619 5.77 0.00 0.00 4.84
83 84 1.132643 GTCTCAGTTGGTAGATCGCGT 59.867 52.381 5.77 0.00 0.00 6.01
84 85 1.132453 TGTCTCAGTTGGTAGATCGCG 59.868 52.381 0.00 0.00 0.00 5.87
85 86 2.941453 TGTCTCAGTTGGTAGATCGC 57.059 50.000 0.00 0.00 0.00 4.58
86 87 6.796426 TCTTAATGTCTCAGTTGGTAGATCG 58.204 40.000 0.00 0.00 0.00 3.69
87 88 7.777095 ACTCTTAATGTCTCAGTTGGTAGATC 58.223 38.462 0.00 0.00 0.00 2.75
88 89 7.726033 ACTCTTAATGTCTCAGTTGGTAGAT 57.274 36.000 0.00 0.00 0.00 1.98
89 90 8.107729 TCTACTCTTAATGTCTCAGTTGGTAGA 58.892 37.037 0.00 0.00 0.00 2.59
90 91 8.282455 TCTACTCTTAATGTCTCAGTTGGTAG 57.718 38.462 0.00 0.00 0.00 3.18
91 92 8.107729 TCTCTACTCTTAATGTCTCAGTTGGTA 58.892 37.037 0.00 0.00 0.00 3.25
92 93 6.948886 TCTCTACTCTTAATGTCTCAGTTGGT 59.051 38.462 0.00 0.00 0.00 3.67
93 94 7.397892 TCTCTACTCTTAATGTCTCAGTTGG 57.602 40.000 0.00 0.00 0.00 3.77
94 95 9.515020 GAATCTCTACTCTTAATGTCTCAGTTG 57.485 37.037 0.00 0.00 0.00 3.16
95 96 9.249053 TGAATCTCTACTCTTAATGTCTCAGTT 57.751 33.333 0.00 0.00 0.00 3.16
96 97 8.815565 TGAATCTCTACTCTTAATGTCTCAGT 57.184 34.615 0.00 0.00 0.00 3.41
97 98 9.897744 GATGAATCTCTACTCTTAATGTCTCAG 57.102 37.037 0.00 0.00 0.00 3.35
98 99 9.639563 AGATGAATCTCTACTCTTAATGTCTCA 57.360 33.333 0.00 0.00 29.30 3.27
115 116 3.372897 TGGAGAGCACAGAGATGAATCT 58.627 45.455 0.00 0.00 40.50 2.40
121 122 2.575279 ACCAATTGGAGAGCACAGAGAT 59.425 45.455 31.22 0.05 38.94 2.75
125 126 3.005554 CACTACCAATTGGAGAGCACAG 58.994 50.000 31.22 15.80 38.94 3.66
220 223 0.387622 CACGGGCAATGCAAACTGAG 60.388 55.000 7.79 0.00 0.00 3.35
221 224 1.106351 ACACGGGCAATGCAAACTGA 61.106 50.000 7.79 0.00 0.00 3.41
222 225 0.664166 GACACGGGCAATGCAAACTG 60.664 55.000 7.79 0.00 0.00 3.16
223 226 0.823356 AGACACGGGCAATGCAAACT 60.823 50.000 7.79 0.00 0.00 2.66
224 227 0.031994 AAGACACGGGCAATGCAAAC 59.968 50.000 7.79 0.00 0.00 2.93
237 240 0.037605 AACCGATCGGACCAAGACAC 60.038 55.000 39.55 0.00 38.96 3.67
288 291 4.583073 AGAATGCCACCTTAAAAACGAACT 59.417 37.500 0.00 0.00 0.00 3.01
327 334 7.066645 TGCAGATCAAAATGACAGGAAGATTAG 59.933 37.037 0.00 0.00 0.00 1.73
328 335 6.885918 TGCAGATCAAAATGACAGGAAGATTA 59.114 34.615 0.00 0.00 0.00 1.75
329 336 5.713389 TGCAGATCAAAATGACAGGAAGATT 59.287 36.000 0.00 0.00 0.00 2.40
330 337 5.258841 TGCAGATCAAAATGACAGGAAGAT 58.741 37.500 0.00 0.00 0.00 2.40
331 338 4.654915 TGCAGATCAAAATGACAGGAAGA 58.345 39.130 0.00 0.00 0.00 2.87
332 339 5.105877 ACATGCAGATCAAAATGACAGGAAG 60.106 40.000 8.11 0.00 0.00 3.46
333 340 4.768448 ACATGCAGATCAAAATGACAGGAA 59.232 37.500 8.11 0.00 0.00 3.36
434 441 9.458727 ACATAAAGAACATCTCATCACAAGAAT 57.541 29.630 0.00 0.00 0.00 2.40
453 460 0.373716 GGGCGCGAGAACACATAAAG 59.626 55.000 12.10 0.00 0.00 1.85
469 476 6.160576 TGAATTAAAAATGGCTATGAGGGC 57.839 37.500 0.00 0.00 0.00 5.19
472 2271 9.139174 ACGTTTTGAATTAAAAATGGCTATGAG 57.861 29.630 19.93 2.46 39.79 2.90
500 2299 9.239002 GTGACTAGTCTTGTATATCACACAATC 57.761 37.037 23.01 0.00 36.69 2.67
543 2342 7.337942 GGTCATGATCCACTGAATAGTCTTTTT 59.662 37.037 0.00 0.00 34.07 1.94
546 2345 5.452496 CGGTCATGATCCACTGAATAGTCTT 60.452 44.000 0.00 0.00 34.07 3.01
547 2346 4.038522 CGGTCATGATCCACTGAATAGTCT 59.961 45.833 0.00 0.00 34.07 3.24
548 2347 4.302455 CGGTCATGATCCACTGAATAGTC 58.698 47.826 0.00 0.00 34.07 2.59
550 2349 3.062763 GCGGTCATGATCCACTGAATAG 58.937 50.000 0.00 0.00 0.00 1.73
551 2350 2.433970 TGCGGTCATGATCCACTGAATA 59.566 45.455 0.00 0.00 0.00 1.75
552 2351 1.210234 TGCGGTCATGATCCACTGAAT 59.790 47.619 0.00 0.00 0.00 2.57
555 2354 2.224137 ACTATGCGGTCATGATCCACTG 60.224 50.000 0.00 0.00 34.22 3.66
556 2355 2.042464 ACTATGCGGTCATGATCCACT 58.958 47.619 0.00 0.00 34.22 4.00
559 2358 1.800805 CCACTATGCGGTCATGATCC 58.199 55.000 0.00 1.25 34.22 3.36
560 2359 1.151668 GCCACTATGCGGTCATGATC 58.848 55.000 0.00 0.00 34.22 2.92
561 2360 3.312404 GCCACTATGCGGTCATGAT 57.688 52.632 0.00 0.00 34.22 2.45
579 2415 0.723414 CATAACAGGCAGTGCAGTCG 59.277 55.000 18.61 4.10 0.00 4.18
580 2416 1.813513 ACATAACAGGCAGTGCAGTC 58.186 50.000 18.61 0.00 0.00 3.51
581 2417 2.303022 ACTACATAACAGGCAGTGCAGT 59.697 45.455 18.61 12.08 0.00 4.40
582 2418 2.977914 ACTACATAACAGGCAGTGCAG 58.022 47.619 18.61 11.37 0.00 4.41
584 2420 3.600388 AGAACTACATAACAGGCAGTGC 58.400 45.455 6.55 6.55 0.00 4.40
586 2422 7.985752 GGTATTTAGAACTACATAACAGGCAGT 59.014 37.037 0.00 0.00 0.00 4.40
587 2423 7.441458 GGGTATTTAGAACTACATAACAGGCAG 59.559 40.741 5.72 0.00 0.00 4.85
589 2425 7.441458 CAGGGTATTTAGAACTACATAACAGGC 59.559 40.741 5.72 0.00 0.00 4.85
590 2426 8.483758 ACAGGGTATTTAGAACTACATAACAGG 58.516 37.037 5.72 1.11 0.00 4.00
591 2427 9.530633 GACAGGGTATTTAGAACTACATAACAG 57.469 37.037 5.72 1.65 0.00 3.16
592 2428 9.263446 AGACAGGGTATTTAGAACTACATAACA 57.737 33.333 5.72 0.00 0.00 2.41
593 2429 9.530633 CAGACAGGGTATTTAGAACTACATAAC 57.469 37.037 0.00 0.00 0.00 1.89
594 2430 9.263446 ACAGACAGGGTATTTAGAACTACATAA 57.737 33.333 0.00 0.00 0.00 1.90
595 2431 8.834004 ACAGACAGGGTATTTAGAACTACATA 57.166 34.615 0.00 0.00 0.00 2.29
596 2432 7.416438 CGACAGACAGGGTATTTAGAACTACAT 60.416 40.741 0.00 0.00 0.00 2.29
597 2433 6.127814 CGACAGACAGGGTATTTAGAACTACA 60.128 42.308 0.00 0.00 0.00 2.74
598 2434 6.094603 TCGACAGACAGGGTATTTAGAACTAC 59.905 42.308 0.00 0.00 0.00 2.73
599 2435 6.182627 TCGACAGACAGGGTATTTAGAACTA 58.817 40.000 0.00 0.00 0.00 2.24
600 2436 5.014858 TCGACAGACAGGGTATTTAGAACT 58.985 41.667 0.00 0.00 0.00 3.01
601 2437 5.320549 TCGACAGACAGGGTATTTAGAAC 57.679 43.478 0.00 0.00 0.00 3.01
602 2438 6.540438 AATCGACAGACAGGGTATTTAGAA 57.460 37.500 0.00 0.00 0.00 2.10
603 2439 6.153851 TGAAATCGACAGACAGGGTATTTAGA 59.846 38.462 0.00 0.00 0.00 2.10
604 2440 6.338146 TGAAATCGACAGACAGGGTATTTAG 58.662 40.000 0.00 0.00 0.00 1.85
605 2441 6.288941 TGAAATCGACAGACAGGGTATTTA 57.711 37.500 0.00 0.00 0.00 1.40
606 2442 5.160607 TGAAATCGACAGACAGGGTATTT 57.839 39.130 0.00 0.00 0.00 1.40
607 2443 4.819105 TGAAATCGACAGACAGGGTATT 57.181 40.909 0.00 0.00 0.00 1.89
608 2444 4.819105 TTGAAATCGACAGACAGGGTAT 57.181 40.909 0.00 0.00 0.00 2.73
609 2445 4.610605 TTTGAAATCGACAGACAGGGTA 57.389 40.909 0.00 0.00 0.00 3.69
610 2446 3.485463 TTTGAAATCGACAGACAGGGT 57.515 42.857 0.00 0.00 0.00 4.34
611 2447 6.316140 TCATAATTTGAAATCGACAGACAGGG 59.684 38.462 0.00 0.00 0.00 4.45
612 2448 7.182761 GTCATAATTTGAAATCGACAGACAGG 58.817 38.462 9.05 0.00 35.70 4.00
613 2449 6.896613 CGTCATAATTTGAAATCGACAGACAG 59.103 38.462 12.50 3.32 35.70 3.51
614 2450 6.183360 CCGTCATAATTTGAAATCGACAGACA 60.183 38.462 12.50 0.00 35.70 3.41
615 2451 6.035650 TCCGTCATAATTTGAAATCGACAGAC 59.964 38.462 12.50 7.10 35.70 3.51
616 2452 6.103330 TCCGTCATAATTTGAAATCGACAGA 58.897 36.000 12.50 6.47 35.70 3.41
617 2453 6.344572 TCCGTCATAATTTGAAATCGACAG 57.655 37.500 12.50 4.81 35.70 3.51
630 2466 3.884895 TCCAACTTGCATCCGTCATAAT 58.115 40.909 0.00 0.00 0.00 1.28
705 2542 8.636213 AGAGCAATCAAAATTTCAGAAGAAGAA 58.364 29.630 0.00 0.00 34.71 2.52
706 2543 8.174733 AGAGCAATCAAAATTTCAGAAGAAGA 57.825 30.769 0.00 0.00 34.71 2.87
826 2663 4.838986 AGTGGTGTATTATTCCCGATAGCT 59.161 41.667 0.00 0.00 0.00 3.32
857 2694 6.509418 TCACAAATGATGTAAGCTTTACCC 57.491 37.500 3.20 0.00 41.46 3.69
881 2718 1.202830 ACAACAGAATGGGCGGTAACA 60.203 47.619 0.00 0.00 43.62 2.41
886 2723 0.958091 TTGAACAACAGAATGGGCGG 59.042 50.000 0.00 0.00 43.62 6.13
902 2739 5.766590 TCTACAGACCATACCAGAGATTGA 58.233 41.667 0.00 0.00 0.00 2.57
1108 2945 4.336433 TGCCTGTCAACAGAAAGAAAAGAG 59.664 41.667 11.70 0.00 46.59 2.85
1131 2968 1.707427 ACATGCTTCTTCAGACCCCTT 59.293 47.619 0.00 0.00 0.00 3.95
1261 3109 5.883661 ACTGAGCAAATATAACATGTGTGC 58.116 37.500 0.00 3.06 0.00 4.57
1263 3111 8.792830 AAGTACTGAGCAAATATAACATGTGT 57.207 30.769 0.00 0.00 0.00 3.72
1330 3178 1.208165 ACTCCCTAGCTTTGTGGGGG 61.208 60.000 10.83 10.83 46.69 5.40
1451 3299 1.891150 TGTCTTGTCCGTCCTAACCTC 59.109 52.381 0.00 0.00 0.00 3.85
1462 3310 2.435805 TCCAGCAGGATATGTCTTGTCC 59.564 50.000 3.58 0.00 39.61 4.02
1503 3351 6.487828 AGGAAAATCTGGATCAATCACAAGA 58.512 36.000 0.00 0.00 0.00 3.02
1627 3497 1.070786 GAAGCGACCCTTGGTGTCA 59.929 57.895 0.00 0.00 35.25 3.58
1689 3569 3.753272 GCAAGAACAGCTGTATTCTGGAA 59.247 43.478 22.15 0.00 35.34 3.53
1726 3607 8.102112 CGATCGATGTAAAAATACCATATCACG 58.898 37.037 10.26 0.00 0.00 4.35
1748 3629 1.361668 ATCACACAAGCGCACCGATC 61.362 55.000 11.47 0.00 0.00 3.69
1755 3636 3.673746 TTTAGCATATCACACAAGCGC 57.326 42.857 0.00 0.00 0.00 5.92
1756 3637 5.052172 GCAAATTTAGCATATCACACAAGCG 60.052 40.000 7.47 0.00 0.00 4.68
1778 3659 4.592485 AACATGAAAAATTACGGTGGCA 57.408 36.364 0.00 0.00 0.00 4.92
1779 3660 4.089351 CGAAACATGAAAAATTACGGTGGC 59.911 41.667 0.00 0.00 0.00 5.01
1800 3681 3.376859 AGTTGCATCAAAGAAACACACGA 59.623 39.130 0.00 0.00 0.00 4.35
1939 3821 4.098044 TGGACCGAAAATAGTGCAAACAAA 59.902 37.500 0.00 0.00 30.84 2.83
1945 3827 5.461032 AATTTTGGACCGAAAATAGTGCA 57.539 34.783 11.03 0.00 35.01 4.57
1947 3829 5.047660 TGGGAATTTTGGACCGAAAATAGTG 60.048 40.000 11.03 0.00 35.01 2.74
1957 3840 1.405391 CCGCATTGGGAATTTTGGACC 60.405 52.381 1.69 0.00 0.00 4.46
2018 3901 2.557317 AGACACGGTTTCACGAATTGT 58.443 42.857 0.00 0.00 37.61 2.71
2019 3902 4.921470 ATAGACACGGTTTCACGAATTG 57.079 40.909 0.00 0.00 37.61 2.32
2020 3903 6.647895 AGTTTATAGACACGGTTTCACGAATT 59.352 34.615 0.00 0.00 37.61 2.17
2021 3904 6.161381 AGTTTATAGACACGGTTTCACGAAT 58.839 36.000 0.00 0.00 37.61 3.34
2022 3905 5.531634 AGTTTATAGACACGGTTTCACGAA 58.468 37.500 0.00 0.00 37.61 3.85
2023 3906 5.125100 AGTTTATAGACACGGTTTCACGA 57.875 39.130 0.00 0.00 37.61 4.35
2024 3907 5.287035 GGTAGTTTATAGACACGGTTTCACG 59.713 44.000 0.00 0.00 40.31 4.35
2025 3908 6.089954 GTGGTAGTTTATAGACACGGTTTCAC 59.910 42.308 0.00 0.00 0.00 3.18
2026 3909 6.015180 AGTGGTAGTTTATAGACACGGTTTCA 60.015 38.462 0.00 0.00 34.28 2.69
2027 3910 6.393171 AGTGGTAGTTTATAGACACGGTTTC 58.607 40.000 0.00 0.00 34.28 2.78
2028 3911 6.350629 AGTGGTAGTTTATAGACACGGTTT 57.649 37.500 0.00 0.00 34.28 3.27
2029 3912 5.990120 AGTGGTAGTTTATAGACACGGTT 57.010 39.130 0.00 0.00 34.28 4.44
2030 3913 5.990120 AAGTGGTAGTTTATAGACACGGT 57.010 39.130 0.00 0.00 34.28 4.83
2031 3914 7.315142 TGTAAAGTGGTAGTTTATAGACACGG 58.685 38.462 0.00 0.00 34.28 4.94
2032 3915 8.746922 TTGTAAAGTGGTAGTTTATAGACACG 57.253 34.615 0.00 0.00 34.28 4.49
2039 3922 9.471084 GCACAAATTTGTAAAGTGGTAGTTTAT 57.529 29.630 22.87 0.00 39.91 1.40
2040 3923 7.644551 CGCACAAATTTGTAAAGTGGTAGTTTA 59.355 33.333 22.87 0.00 39.91 2.01
2041 3924 6.474102 CGCACAAATTTGTAAAGTGGTAGTTT 59.526 34.615 22.87 0.00 39.91 2.66
2042 3925 5.974751 CGCACAAATTTGTAAAGTGGTAGTT 59.025 36.000 22.87 0.00 39.91 2.24
2043 3926 5.297278 TCGCACAAATTTGTAAAGTGGTAGT 59.703 36.000 22.87 0.00 39.91 2.73
2044 3927 5.753744 TCGCACAAATTTGTAAAGTGGTAG 58.246 37.500 22.87 9.01 39.91 3.18
2045 3928 5.752892 TCGCACAAATTTGTAAAGTGGTA 57.247 34.783 22.87 1.50 39.91 3.25
2046 3929 4.640789 TCGCACAAATTTGTAAAGTGGT 57.359 36.364 22.87 0.00 39.91 4.16
2047 3930 5.957910 TTTCGCACAAATTTGTAAAGTGG 57.042 34.783 22.87 11.06 39.91 4.00
2048 3931 6.988329 AGTTTTCGCACAAATTTGTAAAGTG 58.012 32.000 22.87 16.79 39.91 3.16
2049 3932 7.971722 AGTAGTTTTCGCACAAATTTGTAAAGT 59.028 29.630 22.87 21.33 39.91 2.66
2050 3933 8.335256 AGTAGTTTTCGCACAAATTTGTAAAG 57.665 30.769 22.87 16.19 39.91 1.85
2051 3934 9.953697 ATAGTAGTTTTCGCACAAATTTGTAAA 57.046 25.926 22.87 16.63 39.91 2.01
2052 3935 9.953697 AATAGTAGTTTTCGCACAAATTTGTAA 57.046 25.926 22.87 11.71 39.91 2.41
2053 3936 9.953697 AAATAGTAGTTTTCGCACAAATTTGTA 57.046 25.926 22.87 5.84 39.91 2.41
2054 3937 8.865590 AAATAGTAGTTTTCGCACAAATTTGT 57.134 26.923 18.13 18.13 43.36 2.83
2096 3979 9.341899 GCACTTTTCATACATGGTAGTTTTTAG 57.658 33.333 0.00 0.00 0.00 1.85
2097 3980 8.301002 GGCACTTTTCATACATGGTAGTTTTTA 58.699 33.333 0.00 0.00 0.00 1.52
2098 3981 7.151976 GGCACTTTTCATACATGGTAGTTTTT 58.848 34.615 0.00 0.00 0.00 1.94
2099 3982 6.295067 GGGCACTTTTCATACATGGTAGTTTT 60.295 38.462 0.00 0.00 0.00 2.43
2100 3983 5.185056 GGGCACTTTTCATACATGGTAGTTT 59.815 40.000 0.00 0.00 0.00 2.66
2101 3984 4.705023 GGGCACTTTTCATACATGGTAGTT 59.295 41.667 0.00 0.00 0.00 2.24
2102 3985 4.270008 GGGCACTTTTCATACATGGTAGT 58.730 43.478 0.00 0.00 0.00 2.73
2103 3986 3.312421 CGGGCACTTTTCATACATGGTAG 59.688 47.826 0.00 0.00 0.00 3.18
2104 3987 3.055021 TCGGGCACTTTTCATACATGGTA 60.055 43.478 0.00 0.00 0.00 3.25
2105 3988 2.091541 CGGGCACTTTTCATACATGGT 58.908 47.619 0.00 0.00 0.00 3.55
2106 3989 2.364632 TCGGGCACTTTTCATACATGG 58.635 47.619 0.00 0.00 0.00 3.66
2107 3990 4.637483 AATCGGGCACTTTTCATACATG 57.363 40.909 0.00 0.00 0.00 3.21
2108 3991 4.704540 TCAAATCGGGCACTTTTCATACAT 59.295 37.500 0.00 0.00 0.00 2.29
2109 3992 4.075682 TCAAATCGGGCACTTTTCATACA 58.924 39.130 0.00 0.00 0.00 2.29
2110 3993 4.156008 AGTCAAATCGGGCACTTTTCATAC 59.844 41.667 0.00 0.00 0.00 2.39
2111 3994 4.331968 AGTCAAATCGGGCACTTTTCATA 58.668 39.130 0.00 0.00 0.00 2.15
2112 3995 3.157087 AGTCAAATCGGGCACTTTTCAT 58.843 40.909 0.00 0.00 0.00 2.57
2113 3996 2.552315 GAGTCAAATCGGGCACTTTTCA 59.448 45.455 0.00 0.00 0.00 2.69
2114 3997 2.412847 CGAGTCAAATCGGGCACTTTTC 60.413 50.000 0.00 0.00 39.04 2.29
2115 3998 1.535462 CGAGTCAAATCGGGCACTTTT 59.465 47.619 0.00 0.00 39.04 2.27
2116 3999 1.156736 CGAGTCAAATCGGGCACTTT 58.843 50.000 0.00 0.00 39.04 2.66
2117 4000 0.034896 ACGAGTCAAATCGGGCACTT 59.965 50.000 4.81 0.00 46.91 3.16
2118 4001 0.034896 AACGAGTCAAATCGGGCACT 59.965 50.000 4.81 0.00 46.91 4.40
2119 4002 0.872388 AAACGAGTCAAATCGGGCAC 59.128 50.000 4.81 0.00 46.91 5.01
2120 4003 2.459060 TAAACGAGTCAAATCGGGCA 57.541 45.000 4.81 0.00 46.91 5.36
2121 4004 3.187842 AGTTTAAACGAGTCAAATCGGGC 59.812 43.478 12.54 0.00 46.91 6.13
2122 4005 4.433805 CGAGTTTAAACGAGTCAAATCGGG 60.434 45.833 12.54 0.00 46.91 5.14
2123 4006 4.383649 TCGAGTTTAAACGAGTCAAATCGG 59.616 41.667 12.54 0.74 46.91 4.18
2125 4008 9.409949 CATAATCGAGTTTAAACGAGTCAAATC 57.590 33.333 12.54 1.84 41.63 2.17
2126 4009 9.146984 TCATAATCGAGTTTAAACGAGTCAAAT 57.853 29.630 12.54 0.92 41.63 2.32
2127 4010 8.523523 TCATAATCGAGTTTAAACGAGTCAAA 57.476 30.769 12.54 0.00 41.63 2.69
2128 4011 8.523523 TTCATAATCGAGTTTAAACGAGTCAA 57.476 30.769 12.54 0.01 41.63 3.18
2129 4012 8.523523 TTTCATAATCGAGTTTAAACGAGTCA 57.476 30.769 12.54 0.00 41.63 3.41
2130 4013 9.801714 TTTTTCATAATCGAGTTTAAACGAGTC 57.198 29.630 12.54 4.56 41.63 3.36
2153 4036 5.699001 GGGACCTGATTGCGTTTTTATTTTT 59.301 36.000 0.00 0.00 0.00 1.94
2154 4037 5.011635 AGGGACCTGATTGCGTTTTTATTTT 59.988 36.000 0.00 0.00 0.00 1.82
2155 4038 4.526650 AGGGACCTGATTGCGTTTTTATTT 59.473 37.500 0.00 0.00 0.00 1.40
2156 4039 4.082245 CAGGGACCTGATTGCGTTTTTATT 60.082 41.667 13.06 0.00 46.30 1.40
2157 4040 3.443681 CAGGGACCTGATTGCGTTTTTAT 59.556 43.478 13.06 0.00 46.30 1.40
2158 4041 2.817258 CAGGGACCTGATTGCGTTTTTA 59.183 45.455 13.06 0.00 46.30 1.52
2159 4042 1.613437 CAGGGACCTGATTGCGTTTTT 59.387 47.619 13.06 0.00 46.30 1.94
2160 4043 1.247567 CAGGGACCTGATTGCGTTTT 58.752 50.000 13.06 0.00 46.30 2.43
2161 4044 1.244019 GCAGGGACCTGATTGCGTTT 61.244 55.000 22.03 0.00 46.30 3.60
2162 4045 1.675641 GCAGGGACCTGATTGCGTT 60.676 57.895 22.03 0.00 46.30 4.84
2163 4046 2.045926 GCAGGGACCTGATTGCGT 60.046 61.111 22.03 0.00 46.30 5.24
2164 4047 1.243342 TTTGCAGGGACCTGATTGCG 61.243 55.000 22.03 0.00 46.30 4.85
2165 4048 0.529378 CTTTGCAGGGACCTGATTGC 59.471 55.000 22.03 7.89 46.30 3.56
2166 4049 1.815003 GTCTTTGCAGGGACCTGATTG 59.185 52.381 22.03 8.32 46.30 2.67
2167 4050 1.425066 TGTCTTTGCAGGGACCTGATT 59.575 47.619 22.03 0.00 46.30 2.57
2168 4051 1.067295 TGTCTTTGCAGGGACCTGAT 58.933 50.000 22.03 0.00 46.30 2.90
2169 4052 0.843309 TTGTCTTTGCAGGGACCTGA 59.157 50.000 22.03 4.63 46.30 3.86
2170 4053 1.242076 CTTGTCTTTGCAGGGACCTG 58.758 55.000 13.99 13.99 46.15 4.00
2171 4054 0.111253 CCTTGTCTTTGCAGGGACCT 59.889 55.000 15.31 0.00 37.77 3.85
2172 4055 0.110486 TCCTTGTCTTTGCAGGGACC 59.890 55.000 15.31 0.00 39.31 4.46
2173 4056 1.981256 TTCCTTGTCTTTGCAGGGAC 58.019 50.000 12.33 12.33 43.06 4.46
2174 4057 2.746279 TTTCCTTGTCTTTGCAGGGA 57.254 45.000 0.00 0.00 41.92 4.20
2175 4058 3.817709 TTTTTCCTTGTCTTTGCAGGG 57.182 42.857 0.00 0.00 37.01 4.45
2192 4075 2.962859 ACAGGGACCTGATTGCTTTTT 58.037 42.857 24.31 0.00 46.30 1.94
2193 4076 2.629617 CAACAGGGACCTGATTGCTTTT 59.370 45.455 24.31 3.99 46.30 2.27
2194 4077 2.242043 CAACAGGGACCTGATTGCTTT 58.758 47.619 24.31 4.70 46.30 3.51
2195 4078 1.915141 CAACAGGGACCTGATTGCTT 58.085 50.000 24.31 5.41 46.30 3.91
2196 4079 0.610232 GCAACAGGGACCTGATTGCT 60.610 55.000 29.97 10.49 45.76 3.91
2197 4080 1.598701 GGCAACAGGGACCTGATTGC 61.599 60.000 29.71 29.71 46.89 3.56
2198 4081 1.308069 CGGCAACAGGGACCTGATTG 61.308 60.000 24.31 21.65 46.30 2.67
2199 4082 1.002134 CGGCAACAGGGACCTGATT 60.002 57.895 24.31 11.86 46.30 2.57
2200 4083 2.185310 GACGGCAACAGGGACCTGAT 62.185 60.000 24.31 10.42 46.30 2.90
2201 4084 2.847234 ACGGCAACAGGGACCTGA 60.847 61.111 24.31 0.00 46.30 3.86
2203 4086 2.397413 CTTGACGGCAACAGGGACCT 62.397 60.000 0.00 0.00 0.00 3.85
2204 4087 1.966451 CTTGACGGCAACAGGGACC 60.966 63.158 0.00 0.00 0.00 4.46
2205 4088 2.617274 GCTTGACGGCAACAGGGAC 61.617 63.158 0.00 0.00 0.00 4.46
2206 4089 2.281484 GCTTGACGGCAACAGGGA 60.281 61.111 0.00 0.00 0.00 4.20
2207 4090 2.281761 AGCTTGACGGCAACAGGG 60.282 61.111 0.00 0.00 34.17 4.45
2208 4091 0.957395 ATGAGCTTGACGGCAACAGG 60.957 55.000 0.00 0.00 34.17 4.00
2209 4092 0.877071 AATGAGCTTGACGGCAACAG 59.123 50.000 0.00 0.00 34.17 3.16
2210 4093 0.874390 GAATGAGCTTGACGGCAACA 59.126 50.000 0.00 0.00 34.17 3.33
2211 4094 0.169009 GGAATGAGCTTGACGGCAAC 59.831 55.000 0.00 0.00 34.17 4.17
2212 4095 0.960364 GGGAATGAGCTTGACGGCAA 60.960 55.000 2.36 2.36 34.17 4.52
2213 4096 1.377202 GGGAATGAGCTTGACGGCA 60.377 57.895 0.00 0.00 34.17 5.69
2214 4097 2.464459 CGGGAATGAGCTTGACGGC 61.464 63.158 0.00 0.00 0.00 5.68
2215 4098 2.464459 GCGGGAATGAGCTTGACGG 61.464 63.158 0.00 0.00 0.00 4.79
2216 4099 2.464459 GGCGGGAATGAGCTTGACG 61.464 63.158 0.00 0.00 0.00 4.35
2217 4100 1.078143 AGGCGGGAATGAGCTTGAC 60.078 57.895 0.00 0.00 0.00 3.18
2218 4101 1.221840 GAGGCGGGAATGAGCTTGA 59.778 57.895 0.00 0.00 0.00 3.02
2219 4102 1.821332 GGAGGCGGGAATGAGCTTG 60.821 63.158 0.00 0.00 0.00 4.01
2220 4103 2.592308 GGAGGCGGGAATGAGCTT 59.408 61.111 0.00 0.00 0.00 3.74
2221 4104 3.854669 CGGAGGCGGGAATGAGCT 61.855 66.667 0.00 0.00 0.00 4.09
2238 4121 2.512515 CGACCTGCTAGCCAAGGC 60.513 66.667 18.65 2.02 42.33 4.35
2239 4122 2.512515 GCGACCTGCTAGCCAAGG 60.513 66.667 17.44 17.44 41.73 3.61
2244 4127 4.143333 TTCCGGCGACCTGCTAGC 62.143 66.667 9.30 8.10 45.43 3.42
2245 4128 1.739338 ATCTTCCGGCGACCTGCTAG 61.739 60.000 9.30 0.00 45.43 3.42
2246 4129 1.756950 ATCTTCCGGCGACCTGCTA 60.757 57.895 9.30 0.00 45.43 3.49
2247 4130 3.077556 ATCTTCCGGCGACCTGCT 61.078 61.111 9.30 0.00 45.43 4.24
2248 4131 2.892425 CATCTTCCGGCGACCTGC 60.892 66.667 9.30 0.00 45.38 4.85
2249 4132 2.892425 GCATCTTCCGGCGACCTG 60.892 66.667 9.30 0.00 0.00 4.00
2250 4133 4.162690 GGCATCTTCCGGCGACCT 62.163 66.667 9.30 0.00 0.00 3.85
2251 4134 3.969250 TTGGCATCTTCCGGCGACC 62.969 63.158 9.30 0.00 0.00 4.79
2252 4135 2.038269 TTTGGCATCTTCCGGCGAC 61.038 57.895 9.30 0.00 0.00 5.19
2253 4136 2.038269 GTTTGGCATCTTCCGGCGA 61.038 57.895 9.30 0.00 0.00 5.54
2254 4137 2.485122 GTTTGGCATCTTCCGGCG 59.515 61.111 0.00 0.00 0.00 6.46
2255 4138 1.582610 TTCGTTTGGCATCTTCCGGC 61.583 55.000 0.00 0.00 0.00 6.13
2256 4139 1.094785 ATTCGTTTGGCATCTTCCGG 58.905 50.000 0.00 0.00 0.00 5.14
2257 4140 2.095263 ACAATTCGTTTGGCATCTTCCG 60.095 45.455 0.00 0.00 39.80 4.30
2258 4141 3.244976 CACAATTCGTTTGGCATCTTCC 58.755 45.455 0.00 0.00 39.80 3.46
2259 4142 3.244976 CCACAATTCGTTTGGCATCTTC 58.755 45.455 0.00 0.00 39.80 2.87
2260 4143 2.627699 ACCACAATTCGTTTGGCATCTT 59.372 40.909 0.00 0.00 39.80 2.40
2261 4144 2.238521 ACCACAATTCGTTTGGCATCT 58.761 42.857 0.00 0.00 39.80 2.90
2262 4145 2.723124 ACCACAATTCGTTTGGCATC 57.277 45.000 0.00 0.00 39.80 3.91
2263 4146 3.153919 ACTACCACAATTCGTTTGGCAT 58.846 40.909 0.00 0.00 39.80 4.40
2264 4147 2.577700 ACTACCACAATTCGTTTGGCA 58.422 42.857 5.97 0.00 39.80 4.92
2265 4148 3.636282 AACTACCACAATTCGTTTGGC 57.364 42.857 5.97 0.00 39.80 4.52
2288 4171 9.642327 TGAGCAAAGTATACGACTATTTAACAA 57.358 29.630 0.00 0.00 37.44 2.83
2289 4172 9.297586 CTGAGCAAAGTATACGACTATTTAACA 57.702 33.333 0.00 0.00 37.44 2.41
2290 4173 8.753175 CCTGAGCAAAGTATACGACTATTTAAC 58.247 37.037 0.00 0.00 37.44 2.01
2291 4174 8.472413 ACCTGAGCAAAGTATACGACTATTTAA 58.528 33.333 0.00 0.00 37.44 1.52
2292 4175 8.004087 ACCTGAGCAAAGTATACGACTATTTA 57.996 34.615 0.00 0.00 37.44 1.40
2293 4176 6.875076 ACCTGAGCAAAGTATACGACTATTT 58.125 36.000 0.00 0.00 37.44 1.40
2294 4177 6.466885 ACCTGAGCAAAGTATACGACTATT 57.533 37.500 0.00 0.00 37.44 1.73
2295 4178 6.127423 ACAACCTGAGCAAAGTATACGACTAT 60.127 38.462 0.00 0.00 37.44 2.12
2296 4179 5.184479 ACAACCTGAGCAAAGTATACGACTA 59.816 40.000 0.00 0.00 37.44 2.59
2297 4180 4.021368 ACAACCTGAGCAAAGTATACGACT 60.021 41.667 0.00 0.00 41.56 4.18
2298 4181 4.243270 ACAACCTGAGCAAAGTATACGAC 58.757 43.478 0.00 0.00 0.00 4.34
2299 4182 4.530710 ACAACCTGAGCAAAGTATACGA 57.469 40.909 0.00 0.00 0.00 3.43
2300 4183 5.607119 AAACAACCTGAGCAAAGTATACG 57.393 39.130 0.00 0.00 0.00 3.06
2591 4481 4.042809 TCCACAATCTTGTTGGTATCCAGT 59.957 41.667 0.00 0.00 39.91 4.00
2597 4487 6.718912 TGATGAAATCCACAATCTTGTTGGTA 59.281 34.615 0.00 0.00 44.73 3.25
2642 4532 2.184322 CCTCCGGTCACCATCACG 59.816 66.667 0.00 0.00 0.00 4.35
2745 4642 2.045926 GGTGGCGAACTGATGGCT 60.046 61.111 0.00 0.00 32.60 4.75
2969 4885 4.364415 AAAGTCAAACGCAGCACTAAAA 57.636 36.364 0.00 0.00 0.00 1.52
2973 4889 2.017049 AGAAAAGTCAAACGCAGCACT 58.983 42.857 0.00 0.00 0.00 4.40
2974 4890 2.111756 CAGAAAAGTCAAACGCAGCAC 58.888 47.619 0.00 0.00 0.00 4.40
2975 4891 1.065401 CCAGAAAAGTCAAACGCAGCA 59.935 47.619 0.00 0.00 0.00 4.41
2976 4892 1.600413 CCCAGAAAAGTCAAACGCAGC 60.600 52.381 0.00 0.00 0.00 5.25
2977 4893 1.946768 TCCCAGAAAAGTCAAACGCAG 59.053 47.619 0.00 0.00 0.00 5.18
2978 4894 1.946768 CTCCCAGAAAAGTCAAACGCA 59.053 47.619 0.00 0.00 0.00 5.24
2979 4895 1.335051 GCTCCCAGAAAAGTCAAACGC 60.335 52.381 0.00 0.00 0.00 4.84
2980 4896 1.946768 TGCTCCCAGAAAAGTCAAACG 59.053 47.619 0.00 0.00 0.00 3.60
2981 4897 4.590850 AATGCTCCCAGAAAAGTCAAAC 57.409 40.909 0.00 0.00 0.00 2.93
2982 4898 5.363580 AGAAAATGCTCCCAGAAAAGTCAAA 59.636 36.000 0.00 0.00 0.00 2.69
2983 4899 4.895297 AGAAAATGCTCCCAGAAAAGTCAA 59.105 37.500 0.00 0.00 0.00 3.18
2984 4900 4.279169 CAGAAAATGCTCCCAGAAAAGTCA 59.721 41.667 0.00 0.00 0.00 3.41
2985 4901 4.802999 CAGAAAATGCTCCCAGAAAAGTC 58.197 43.478 0.00 0.00 0.00 3.01
2986 4902 4.861102 CAGAAAATGCTCCCAGAAAAGT 57.139 40.909 0.00 0.00 0.00 2.66
2999 4915 6.198778 TCAATGAAAGTCAAACGCAGAAAATG 59.801 34.615 0.00 0.00 0.00 2.32
3000 4916 6.272318 TCAATGAAAGTCAAACGCAGAAAAT 58.728 32.000 0.00 0.00 0.00 1.82
3001 4917 5.645624 TCAATGAAAGTCAAACGCAGAAAA 58.354 33.333 0.00 0.00 0.00 2.29
3002 4918 5.242069 TCAATGAAAGTCAAACGCAGAAA 57.758 34.783 0.00 0.00 0.00 2.52
3262 5231 3.895232 TCCTCAATAGTTCTCCTGCAC 57.105 47.619 0.00 0.00 0.00 4.57
3474 5444 2.297597 GCTCATACAAGTATCCGCCTCT 59.702 50.000 0.00 0.00 0.00 3.69
3483 5453 1.409064 CGAGGCTGGCTCATACAAGTA 59.591 52.381 27.71 0.00 0.00 2.24
3580 5551 2.413837 GCTTTGTCTGGCTTCGAGTTA 58.586 47.619 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.