Multiple sequence alignment - TraesCS1A01G232600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G232600 chr1A 100.000 2684 0 0 1 2684 406141993 406144676 0.000000e+00 4957.0
1 TraesCS1A01G232600 chr1A 93.939 66 4 0 1338 1403 405869121 405869186 1.700000e-17 100.0
2 TraesCS1A01G232600 chr1D 91.418 1340 38 33 498 1811 322262022 322263310 0.000000e+00 1766.0
3 TraesCS1A01G232600 chr1D 84.582 467 38 14 2124 2563 322263318 322263777 1.480000e-117 433.0
4 TraesCS1A01G232600 chr1D 88.696 345 22 10 217 545 322261676 322262019 3.220000e-109 405.0
5 TraesCS1A01G232600 chr1D 83.486 218 16 11 2 218 322261453 322261651 4.560000e-43 185.0
6 TraesCS1A01G232600 chr1D 89.610 77 5 2 1330 1403 322165243 322165319 7.910000e-16 95.3
7 TraesCS1A01G232600 chr1B 89.313 917 46 22 928 1811 435042616 435043513 0.000000e+00 1103.0
8 TraesCS1A01G232600 chr1B 82.910 591 59 20 2124 2684 435043521 435044099 6.680000e-136 494.0
9 TraesCS1A01G232600 chr1B 86.181 398 28 12 165 535 435041744 435042141 3.220000e-109 405.0
10 TraesCS1A01G232600 chr1B 89.610 77 5 3 1330 1403 434835515 434835591 7.910000e-16 95.3
11 TraesCS1A01G232600 chr7A 93.182 308 20 1 1808 2114 711583886 711584193 4.070000e-123 451.0
12 TraesCS1A01G232600 chr7A 93.115 305 20 1 1809 2113 562321988 562322291 1.900000e-121 446.0
13 TraesCS1A01G232600 chr3A 93.182 308 20 1 1807 2113 734490194 734490501 4.070000e-123 451.0
14 TraesCS1A01G232600 chr3A 93.092 304 21 0 1809 2112 673603588 673603891 1.900000e-121 446.0
15 TraesCS1A01G232600 chr5D 92.903 310 20 2 1806 2113 407531120 407530811 1.470000e-122 449.0
16 TraesCS1A01G232600 chr4B 93.160 307 20 1 1807 2112 40215226 40215532 1.470000e-122 449.0
17 TraesCS1A01G232600 chr6A 92.381 315 21 2 1805 2116 121662458 121662772 1.900000e-121 446.0
18 TraesCS1A01G232600 chr4A 92.581 310 21 2 1805 2112 591931445 591931754 6.820000e-121 444.0
19 TraesCS1A01G232600 chr3B 92.810 306 22 0 1808 2113 623667584 623667279 6.820000e-121 444.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G232600 chr1A 406141993 406144676 2683 False 4957.000000 4957 100.000000 1 2684 1 chr1A.!!$F2 2683
1 TraesCS1A01G232600 chr1D 322261453 322263777 2324 False 697.250000 1766 87.045500 2 2563 4 chr1D.!!$F2 2561
2 TraesCS1A01G232600 chr1B 435041744 435044099 2355 False 667.333333 1103 86.134667 165 2684 3 chr1B.!!$F2 2519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 377 0.615331 TGCCTAGAGTGGGAAGCTTG 59.385 55.0 2.1 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2327 0.028505 CGATGCGCTTTCAATGGGAG 59.971 55.0 9.73 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.789802 GCAGTGCTTGGTTCTTAAACAGAC 60.790 45.833 8.18 0.00 37.10 3.51
41 42 3.607078 GCTTGGTTCTTAAACAGACAGCG 60.607 47.826 0.00 0.00 37.10 5.18
45 46 3.744426 GGTTCTTAAACAGACAGCGCTTA 59.256 43.478 7.50 0.00 37.10 3.09
83 84 7.573968 GCCCTTGGCCATAATTAATATAGAG 57.426 40.000 6.09 0.00 44.06 2.43
84 85 7.119387 GCCCTTGGCCATAATTAATATAGAGT 58.881 38.462 6.09 0.00 44.06 3.24
85 86 8.272173 GCCCTTGGCCATAATTAATATAGAGTA 58.728 37.037 6.09 0.00 44.06 2.59
118 119 5.127491 ACATTAGTAGAGAACTCGAGGAGG 58.873 45.833 18.41 0.00 39.80 4.30
120 121 5.432680 TTAGTAGAGAACTCGAGGAGGAA 57.567 43.478 18.41 0.00 39.80 3.36
121 122 4.304048 AGTAGAGAACTCGAGGAGGAAA 57.696 45.455 18.41 0.00 30.33 3.13
122 123 4.664392 AGTAGAGAACTCGAGGAGGAAAA 58.336 43.478 18.41 0.00 30.33 2.29
123 124 5.078256 AGTAGAGAACTCGAGGAGGAAAAA 58.922 41.667 18.41 0.00 30.33 1.94
124 125 4.529109 AGAGAACTCGAGGAGGAAAAAG 57.471 45.455 18.41 0.00 33.35 2.27
125 126 3.898741 AGAGAACTCGAGGAGGAAAAAGT 59.101 43.478 18.41 0.00 33.35 2.66
126 127 5.078256 AGAGAACTCGAGGAGGAAAAAGTA 58.922 41.667 18.41 0.00 33.35 2.24
127 128 5.047872 AGAGAACTCGAGGAGGAAAAAGTAC 60.048 44.000 18.41 0.00 33.35 2.73
223 252 2.045242 TCCTCGTCCTCCTGGTCG 60.045 66.667 0.00 0.00 44.17 4.79
232 261 4.649705 TCCTGGTCGGGGCCTCAA 62.650 66.667 1.96 0.00 0.00 3.02
233 262 4.101448 CCTGGTCGGGGCCTCAAG 62.101 72.222 1.96 0.00 0.00 3.02
234 263 3.003173 CTGGTCGGGGCCTCAAGA 61.003 66.667 1.96 0.00 0.00 3.02
265 302 1.865865 ACAGTGCTACACTTTGACCG 58.134 50.000 0.00 0.00 42.59 4.79
329 366 5.007136 GGATCGACTTTTTCATTGCCTAGAG 59.993 44.000 0.00 0.00 0.00 2.43
330 367 4.894784 TCGACTTTTTCATTGCCTAGAGT 58.105 39.130 0.00 0.00 0.00 3.24
331 368 4.690748 TCGACTTTTTCATTGCCTAGAGTG 59.309 41.667 0.00 0.00 0.00 3.51
332 369 4.142816 CGACTTTTTCATTGCCTAGAGTGG 60.143 45.833 0.00 0.00 0.00 4.00
333 370 4.082125 ACTTTTTCATTGCCTAGAGTGGG 58.918 43.478 0.00 0.00 0.00 4.61
334 371 4.202567 ACTTTTTCATTGCCTAGAGTGGGA 60.203 41.667 0.00 0.00 0.00 4.37
337 374 1.210478 TCATTGCCTAGAGTGGGAAGC 59.790 52.381 0.00 0.00 40.65 3.86
338 375 1.211457 CATTGCCTAGAGTGGGAAGCT 59.789 52.381 0.00 0.00 40.65 3.74
339 376 1.362224 TTGCCTAGAGTGGGAAGCTT 58.638 50.000 0.00 0.00 32.46 3.74
340 377 0.615331 TGCCTAGAGTGGGAAGCTTG 59.385 55.000 2.10 0.00 0.00 4.01
341 378 0.746204 GCCTAGAGTGGGAAGCTTGC 60.746 60.000 9.87 9.87 0.00 4.01
355 407 1.410517 AGCTTGCGCTCTGCTCTATTA 59.589 47.619 9.73 0.00 45.15 0.98
404 456 5.862924 TTTCTCTTCGTCCATGATTTGTC 57.137 39.130 0.00 0.00 0.00 3.18
405 457 4.808414 TCTCTTCGTCCATGATTTGTCT 57.192 40.909 0.00 0.00 0.00 3.41
407 459 3.002791 TCTTCGTCCATGATTTGTCTGC 58.997 45.455 0.00 0.00 0.00 4.26
463 515 6.038356 CAGTGCAATGAATCATAAAAGGTCC 58.962 40.000 8.85 0.00 0.00 4.46
596 689 9.442047 CTGAGTAATCTGAAATTCTGTAAACCT 57.558 33.333 0.00 0.00 0.00 3.50
665 954 5.688823 TCTCGAGTTAAAATGTGCACATTG 58.311 37.500 38.30 25.68 45.06 2.82
743 1035 2.734606 CACGGACGAAGCAAACAGAATA 59.265 45.455 0.00 0.00 0.00 1.75
772 1064 9.874205 ATAATTTTGAATGATTATTATGCCCCG 57.126 29.630 0.00 0.00 0.00 5.73
808 1102 3.662759 AGATTATGCCCCGGAAAAAGA 57.337 42.857 0.73 0.00 0.00 2.52
885 1179 5.732247 GCGCTCCAAAATTCCGTTTACATAT 60.732 40.000 0.00 0.00 0.00 1.78
886 1180 5.907391 CGCTCCAAAATTCCGTTTACATATC 59.093 40.000 0.00 0.00 0.00 1.63
887 1181 5.907391 GCTCCAAAATTCCGTTTACATATCG 59.093 40.000 0.00 0.00 0.00 2.92
888 1182 6.238266 GCTCCAAAATTCCGTTTACATATCGA 60.238 38.462 0.00 0.00 0.00 3.59
889 1183 7.007313 TCCAAAATTCCGTTTACATATCGAC 57.993 36.000 0.00 0.00 0.00 4.20
890 1184 5.899696 CCAAAATTCCGTTTACATATCGACG 59.100 40.000 0.00 0.00 35.44 5.12
891 1185 4.703899 AATTCCGTTTACATATCGACGC 57.296 40.909 0.00 0.00 34.41 5.19
892 1186 2.847959 TCCGTTTACATATCGACGCA 57.152 45.000 0.00 0.00 34.41 5.24
893 1187 3.148026 TCCGTTTACATATCGACGCAA 57.852 42.857 0.00 0.00 34.41 4.85
894 1188 3.509740 TCCGTTTACATATCGACGCAAA 58.490 40.909 0.00 0.00 34.41 3.68
905 1199 3.976468 TCGACGCAAAAGGTAAATACG 57.024 42.857 0.00 0.00 0.00 3.06
906 1200 3.573598 TCGACGCAAAAGGTAAATACGA 58.426 40.909 0.00 0.00 0.00 3.43
907 1201 3.364621 TCGACGCAAAAGGTAAATACGAC 59.635 43.478 0.00 0.00 0.00 4.34
909 1203 4.201647 CGACGCAAAAGGTAAATACGACAT 60.202 41.667 0.00 0.00 0.00 3.06
912 1206 7.131498 ACGCAAAAGGTAAATACGACATTTA 57.869 32.000 0.00 0.00 31.09 1.40
913 1207 7.754625 ACGCAAAAGGTAAATACGACATTTAT 58.245 30.769 9.18 0.00 31.09 1.40
914 1208 8.881743 ACGCAAAAGGTAAATACGACATTTATA 58.118 29.630 9.18 0.00 31.09 0.98
915 1209 9.365311 CGCAAAAGGTAAATACGACATTTATAG 57.635 33.333 9.18 0.00 31.09 1.31
1783 2123 1.304282 TGGAGGAAAGCTCCATGCC 59.696 57.895 0.00 0.00 45.15 4.40
1784 2124 1.304282 GGAGGAAAGCTCCATGCCA 59.696 57.895 0.00 0.00 45.24 4.92
1785 2125 0.323725 GGAGGAAAGCTCCATGCCAA 60.324 55.000 0.00 0.00 45.24 4.52
1786 2126 1.549203 GAGGAAAGCTCCATGCCAAA 58.451 50.000 0.00 0.00 45.24 3.28
1799 2143 1.277579 TGCCAAAATGCCATGTCCAT 58.722 45.000 0.00 0.00 0.00 3.41
1836 2180 3.904136 AGCATCAGTACAAACACAAGC 57.096 42.857 0.00 0.00 0.00 4.01
1837 2181 2.224079 AGCATCAGTACAAACACAAGCG 59.776 45.455 0.00 0.00 0.00 4.68
1838 2182 2.574322 CATCAGTACAAACACAAGCGC 58.426 47.619 0.00 0.00 0.00 5.92
1839 2183 1.948104 TCAGTACAAACACAAGCGCT 58.052 45.000 2.64 2.64 0.00 5.92
1840 2184 1.864711 TCAGTACAAACACAAGCGCTC 59.135 47.619 12.06 0.00 0.00 5.03
1841 2185 1.597195 CAGTACAAACACAAGCGCTCA 59.403 47.619 12.06 0.00 0.00 4.26
1842 2186 2.224079 CAGTACAAACACAAGCGCTCAT 59.776 45.455 12.06 0.00 0.00 2.90
1843 2187 3.431912 CAGTACAAACACAAGCGCTCATA 59.568 43.478 12.06 0.00 0.00 2.15
1844 2188 4.093408 CAGTACAAACACAAGCGCTCATAT 59.907 41.667 12.06 0.00 0.00 1.78
1845 2189 5.290885 CAGTACAAACACAAGCGCTCATATA 59.709 40.000 12.06 0.00 0.00 0.86
1846 2190 4.600012 ACAAACACAAGCGCTCATATAC 57.400 40.909 12.06 0.00 0.00 1.47
1847 2191 4.000325 ACAAACACAAGCGCTCATATACA 59.000 39.130 12.06 0.00 0.00 2.29
1848 2192 4.142902 ACAAACACAAGCGCTCATATACAC 60.143 41.667 12.06 0.00 0.00 2.90
1849 2193 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
1853 2197 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
1854 2198 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
1855 2199 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
1856 2200 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
1857 2201 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
1858 2202 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
1859 2203 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
1860 2204 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
1861 2205 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
1862 2206 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
1863 2207 2.287393 TACACGCGCATACACTCATT 57.713 45.000 5.73 0.00 0.00 2.57
1864 2208 0.999406 ACACGCGCATACACTCATTC 59.001 50.000 5.73 0.00 0.00 2.67
1865 2209 0.301687 CACGCGCATACACTCATTCC 59.698 55.000 5.73 0.00 0.00 3.01
1866 2210 0.175760 ACGCGCATACACTCATTCCT 59.824 50.000 5.73 0.00 0.00 3.36
1867 2211 1.407618 ACGCGCATACACTCATTCCTA 59.592 47.619 5.73 0.00 0.00 2.94
1868 2212 2.035961 ACGCGCATACACTCATTCCTAT 59.964 45.455 5.73 0.00 0.00 2.57
1869 2213 2.409715 CGCGCATACACTCATTCCTATG 59.590 50.000 8.75 0.00 0.00 2.23
1870 2214 3.653344 GCGCATACACTCATTCCTATGA 58.347 45.455 0.30 0.00 38.45 2.15
1871 2215 4.058124 GCGCATACACTCATTCCTATGAA 58.942 43.478 0.30 0.00 40.17 2.57
1872 2216 4.084328 GCGCATACACTCATTCCTATGAAC 60.084 45.833 0.30 0.00 40.17 3.18
1873 2217 4.148871 CGCATACACTCATTCCTATGAACG 59.851 45.833 0.00 0.00 40.17 3.95
1874 2218 4.084328 GCATACACTCATTCCTATGAACGC 60.084 45.833 0.00 0.00 40.17 4.84
1875 2219 3.610040 ACACTCATTCCTATGAACGCA 57.390 42.857 0.00 0.00 40.17 5.24
1876 2220 3.262420 ACACTCATTCCTATGAACGCAC 58.738 45.455 0.00 0.00 40.17 5.34
1877 2221 3.261580 CACTCATTCCTATGAACGCACA 58.738 45.455 0.00 0.00 40.17 4.57
1878 2222 3.873361 CACTCATTCCTATGAACGCACAT 59.127 43.478 0.94 0.94 40.17 3.21
1879 2223 5.049828 CACTCATTCCTATGAACGCACATA 58.950 41.667 2.94 2.94 40.17 2.29
1880 2224 5.050490 ACTCATTCCTATGAACGCACATAC 58.950 41.667 0.00 0.00 40.17 2.39
1881 2225 5.017294 TCATTCCTATGAACGCACATACA 57.983 39.130 0.00 0.00 37.83 2.29
1882 2226 4.808895 TCATTCCTATGAACGCACATACAC 59.191 41.667 0.00 0.00 37.83 2.90
1883 2227 3.878160 TCCTATGAACGCACATACACA 57.122 42.857 0.00 0.00 0.00 3.72
1884 2228 3.517602 TCCTATGAACGCACATACACAC 58.482 45.455 0.00 0.00 0.00 3.82
1885 2229 3.056465 TCCTATGAACGCACATACACACA 60.056 43.478 0.00 0.00 0.00 3.72
1886 2230 3.871006 CCTATGAACGCACATACACACAT 59.129 43.478 0.00 0.00 0.00 3.21
1887 2231 4.025730 CCTATGAACGCACATACACACATC 60.026 45.833 0.00 0.00 0.00 3.06
1888 2232 2.073056 TGAACGCACATACACACATCC 58.927 47.619 0.00 0.00 0.00 3.51
1889 2233 2.289382 TGAACGCACATACACACATCCT 60.289 45.455 0.00 0.00 0.00 3.24
1890 2234 3.056465 TGAACGCACATACACACATCCTA 60.056 43.478 0.00 0.00 0.00 2.94
1891 2235 2.888594 ACGCACATACACACATCCTAC 58.111 47.619 0.00 0.00 0.00 3.18
1892 2236 2.201732 CGCACATACACACATCCTACC 58.798 52.381 0.00 0.00 0.00 3.18
1893 2237 2.561569 GCACATACACACATCCTACCC 58.438 52.381 0.00 0.00 0.00 3.69
1894 2238 2.170607 GCACATACACACATCCTACCCT 59.829 50.000 0.00 0.00 0.00 4.34
1895 2239 3.370527 GCACATACACACATCCTACCCTT 60.371 47.826 0.00 0.00 0.00 3.95
1896 2240 4.141801 GCACATACACACATCCTACCCTTA 60.142 45.833 0.00 0.00 0.00 2.69
1897 2241 5.454755 GCACATACACACATCCTACCCTTAT 60.455 44.000 0.00 0.00 0.00 1.73
1898 2242 5.991606 CACATACACACATCCTACCCTTATG 59.008 44.000 0.00 0.00 0.00 1.90
1899 2243 5.903010 ACATACACACATCCTACCCTTATGA 59.097 40.000 0.00 0.00 0.00 2.15
1900 2244 6.042093 ACATACACACATCCTACCCTTATGAG 59.958 42.308 0.00 0.00 0.00 2.90
1901 2245 3.134804 ACACACATCCTACCCTTATGAGC 59.865 47.826 0.00 0.00 0.00 4.26
1902 2246 3.134623 CACACATCCTACCCTTATGAGCA 59.865 47.826 0.00 0.00 0.00 4.26
1903 2247 3.134804 ACACATCCTACCCTTATGAGCAC 59.865 47.826 0.00 0.00 0.00 4.40
1904 2248 2.706190 ACATCCTACCCTTATGAGCACC 59.294 50.000 0.00 0.00 0.00 5.01
1905 2249 2.868964 TCCTACCCTTATGAGCACCT 57.131 50.000 0.00 0.00 0.00 4.00
1906 2250 3.130734 TCCTACCCTTATGAGCACCTT 57.869 47.619 0.00 0.00 0.00 3.50
1907 2251 3.039011 TCCTACCCTTATGAGCACCTTC 58.961 50.000 0.00 0.00 0.00 3.46
1908 2252 2.224066 CCTACCCTTATGAGCACCTTCG 60.224 54.545 0.00 0.00 0.00 3.79
1909 2253 1.568504 ACCCTTATGAGCACCTTCGA 58.431 50.000 0.00 0.00 0.00 3.71
1910 2254 1.906574 ACCCTTATGAGCACCTTCGAA 59.093 47.619 0.00 0.00 0.00 3.71
1911 2255 2.304761 ACCCTTATGAGCACCTTCGAAA 59.695 45.455 0.00 0.00 0.00 3.46
1912 2256 2.939103 CCCTTATGAGCACCTTCGAAAG 59.061 50.000 0.00 0.00 0.00 2.62
1913 2257 3.369471 CCCTTATGAGCACCTTCGAAAGA 60.369 47.826 0.00 0.00 39.20 2.52
1914 2258 3.619038 CCTTATGAGCACCTTCGAAAGAC 59.381 47.826 0.00 0.00 41.84 3.01
1915 2259 4.499183 CTTATGAGCACCTTCGAAAGACT 58.501 43.478 0.00 0.00 41.84 3.24
1916 2260 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
1917 2261 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
1918 2262 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
1919 2263 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
1920 2264 1.433534 CACCTTCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 41.84 4.70
1921 2265 0.038159 ACCTTCGAAAGACTGAGCCG 60.038 55.000 0.00 0.00 41.84 5.52
1922 2266 0.243907 CCTTCGAAAGACTGAGCCGA 59.756 55.000 0.00 0.00 41.84 5.54
1923 2267 1.341606 CTTCGAAAGACTGAGCCGAC 58.658 55.000 0.00 0.00 41.84 4.79
1924 2268 0.671796 TTCGAAAGACTGAGCCGACA 59.328 50.000 0.00 0.00 41.84 4.35
1925 2269 0.888619 TCGAAAGACTGAGCCGACAT 59.111 50.000 0.00 0.00 33.31 3.06
1926 2270 2.089201 TCGAAAGACTGAGCCGACATA 58.911 47.619 0.00 0.00 33.31 2.29
1927 2271 2.688446 TCGAAAGACTGAGCCGACATAT 59.312 45.455 0.00 0.00 33.31 1.78
1928 2272 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
1929 2273 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
1930 2274 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
1931 2275 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
1932 2276 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
1933 2277 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
1934 2278 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
1935 2279 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
1936 2280 4.236147 CTGAGCCGACATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
1937 2281 3.891366 TGAGCCGACATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
1938 2282 4.525874 TGAGCCGACATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
1939 2283 5.011431 TGAGCCGACATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
1940 2284 5.862845 AGCCGACATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
1941 2285 6.997655 AGCCGACATATCATCTTGAGATTTA 58.002 36.000 0.00 0.00 31.21 1.40
1942 2286 6.870965 AGCCGACATATCATCTTGAGATTTAC 59.129 38.462 0.00 0.00 31.21 2.01
1943 2287 6.183360 GCCGACATATCATCTTGAGATTTACG 60.183 42.308 0.00 0.00 31.21 3.18
1944 2288 7.084486 CCGACATATCATCTTGAGATTTACGA 58.916 38.462 0.00 0.00 31.21 3.43
1945 2289 7.595130 CCGACATATCATCTTGAGATTTACGAA 59.405 37.037 0.00 0.00 31.21 3.85
1946 2290 8.634265 CGACATATCATCTTGAGATTTACGAAG 58.366 37.037 0.00 0.00 31.21 3.79
1947 2291 9.469807 GACATATCATCTTGAGATTTACGAAGT 57.530 33.333 0.00 0.00 37.29 3.01
1948 2292 9.469807 ACATATCATCTTGAGATTTACGAAGTC 57.530 33.333 0.00 0.00 35.39 3.01
1949 2293 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
1950 2294 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
1951 2295 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
1952 2296 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
1953 2297 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
1954 2298 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
1955 2299 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
1956 2300 4.696877 TGAGATTTACGAAGTCACCGTAGA 59.303 41.667 0.00 0.00 43.93 2.59
1957 2301 4.979388 AGATTTACGAAGTCACCGTAGAC 58.021 43.478 0.00 0.00 43.93 2.59
1958 2302 2.880822 TTACGAAGTCACCGTAGACG 57.119 50.000 0.00 0.00 43.93 4.18
1959 2303 0.443869 TACGAAGTCACCGTAGACGC 59.556 55.000 0.00 0.00 43.93 5.19
1960 2304 1.513586 CGAAGTCACCGTAGACGCC 60.514 63.158 0.00 0.00 43.24 5.68
1961 2305 1.881602 GAAGTCACCGTAGACGCCT 59.118 57.895 0.00 0.00 43.24 5.52
1962 2306 0.179169 GAAGTCACCGTAGACGCCTC 60.179 60.000 0.00 0.00 43.24 4.70
1963 2307 0.892358 AAGTCACCGTAGACGCCTCA 60.892 55.000 0.00 0.00 43.24 3.86
1964 2308 0.680280 AGTCACCGTAGACGCCTCAT 60.680 55.000 0.00 0.00 43.24 2.90
1965 2309 0.248539 GTCACCGTAGACGCCTCATC 60.249 60.000 0.00 0.00 38.18 2.92
1966 2310 0.678684 TCACCGTAGACGCCTCATCA 60.679 55.000 0.00 0.00 38.18 3.07
1967 2311 0.385751 CACCGTAGACGCCTCATCAT 59.614 55.000 0.00 0.00 38.18 2.45
1968 2312 1.112113 ACCGTAGACGCCTCATCATT 58.888 50.000 0.00 0.00 38.18 2.57
1969 2313 1.202417 ACCGTAGACGCCTCATCATTG 60.202 52.381 0.00 0.00 38.18 2.82
1970 2314 1.067060 CCGTAGACGCCTCATCATTGA 59.933 52.381 0.00 0.00 38.18 2.57
1971 2315 2.120232 CGTAGACGCCTCATCATTGAC 58.880 52.381 0.00 0.00 0.00 3.18
1972 2316 2.120232 GTAGACGCCTCATCATTGACG 58.880 52.381 0.00 0.00 0.00 4.35
1973 2317 0.179100 AGACGCCTCATCATTGACGG 60.179 55.000 0.00 0.00 0.00 4.79
1974 2318 1.153369 ACGCCTCATCATTGACGGG 60.153 57.895 0.00 0.00 0.00 5.28
1975 2319 1.143838 CGCCTCATCATTGACGGGA 59.856 57.895 5.81 0.00 0.00 5.14
1976 2320 0.461870 CGCCTCATCATTGACGGGAA 60.462 55.000 5.81 0.00 0.00 3.97
1977 2321 1.017387 GCCTCATCATTGACGGGAAC 58.983 55.000 5.81 0.00 0.00 3.62
1991 2335 3.460648 GGAACGTCTCCTCCCATTG 57.539 57.895 8.87 0.00 41.61 2.82
1992 2336 0.902531 GGAACGTCTCCTCCCATTGA 59.097 55.000 8.87 0.00 41.61 2.57
1993 2337 1.278127 GGAACGTCTCCTCCCATTGAA 59.722 52.381 8.87 0.00 41.61 2.69
1994 2338 2.290071 GGAACGTCTCCTCCCATTGAAA 60.290 50.000 8.87 0.00 41.61 2.69
1995 2339 2.770164 ACGTCTCCTCCCATTGAAAG 57.230 50.000 0.00 0.00 0.00 2.62
1996 2340 1.339151 ACGTCTCCTCCCATTGAAAGC 60.339 52.381 0.00 0.00 0.00 3.51
1997 2341 1.373570 GTCTCCTCCCATTGAAAGCG 58.626 55.000 0.00 0.00 0.00 4.68
1998 2342 0.392998 TCTCCTCCCATTGAAAGCGC 60.393 55.000 0.00 0.00 0.00 5.92
1999 2343 0.677731 CTCCTCCCATTGAAAGCGCA 60.678 55.000 11.47 0.00 0.00 6.09
2000 2344 0.034186 TCCTCCCATTGAAAGCGCAT 60.034 50.000 11.47 0.00 0.00 4.73
2001 2345 0.383231 CCTCCCATTGAAAGCGCATC 59.617 55.000 11.47 8.39 0.00 3.91
2002 2346 0.028505 CTCCCATTGAAAGCGCATCG 59.971 55.000 11.47 0.00 0.00 3.84
2014 2358 2.845600 CGCATCGCCGAAAATTCTG 58.154 52.632 0.00 0.00 0.00 3.02
2015 2359 0.373370 CGCATCGCCGAAAATTCTGA 59.627 50.000 0.00 0.00 0.00 3.27
2016 2360 1.202020 CGCATCGCCGAAAATTCTGAA 60.202 47.619 0.00 0.00 0.00 3.02
2017 2361 2.727607 CGCATCGCCGAAAATTCTGAAA 60.728 45.455 0.00 0.00 0.00 2.69
2018 2362 3.438360 GCATCGCCGAAAATTCTGAAAT 58.562 40.909 0.00 0.00 0.00 2.17
2019 2363 4.597079 GCATCGCCGAAAATTCTGAAATA 58.403 39.130 0.00 0.00 0.00 1.40
2020 2364 5.034152 GCATCGCCGAAAATTCTGAAATAA 58.966 37.500 0.00 0.00 0.00 1.40
2021 2365 5.514914 GCATCGCCGAAAATTCTGAAATAAA 59.485 36.000 0.00 0.00 0.00 1.40
2022 2366 6.198966 GCATCGCCGAAAATTCTGAAATAAAT 59.801 34.615 0.00 0.00 0.00 1.40
2023 2367 7.378461 GCATCGCCGAAAATTCTGAAATAAATA 59.622 33.333 0.00 0.00 0.00 1.40
2024 2368 8.682016 CATCGCCGAAAATTCTGAAATAAATAC 58.318 33.333 0.00 0.00 0.00 1.89
2025 2369 7.753659 TCGCCGAAAATTCTGAAATAAATACA 58.246 30.769 0.00 0.00 0.00 2.29
2026 2370 7.908082 TCGCCGAAAATTCTGAAATAAATACAG 59.092 33.333 0.00 0.00 0.00 2.74
2027 2371 7.165812 CGCCGAAAATTCTGAAATAAATACAGG 59.834 37.037 0.00 0.00 33.19 4.00
2028 2372 8.188139 GCCGAAAATTCTGAAATAAATACAGGA 58.812 33.333 0.00 0.00 33.19 3.86
2037 2381 9.554395 TCTGAAATAAATACAGGAATAATGCGA 57.446 29.630 0.00 0.00 33.19 5.10
2038 2382 9.817365 CTGAAATAAATACAGGAATAATGCGAG 57.183 33.333 0.00 0.00 0.00 5.03
2039 2383 8.289618 TGAAATAAATACAGGAATAATGCGAGC 58.710 33.333 0.00 0.00 0.00 5.03
2040 2384 7.744087 AATAAATACAGGAATAATGCGAGCA 57.256 32.000 0.00 0.00 0.00 4.26
2041 2385 5.424121 AAATACAGGAATAATGCGAGCAC 57.576 39.130 0.00 0.00 0.00 4.40
2042 2386 1.668419 ACAGGAATAATGCGAGCACC 58.332 50.000 0.00 0.00 0.00 5.01
2043 2387 1.065491 ACAGGAATAATGCGAGCACCA 60.065 47.619 0.00 0.00 0.00 4.17
2044 2388 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
2045 2389 1.486310 AGGAATAATGCGAGCACCAGA 59.514 47.619 0.00 0.00 0.00 3.86
2046 2390 2.092968 AGGAATAATGCGAGCACCAGAA 60.093 45.455 0.00 0.00 0.00 3.02
2047 2391 2.880890 GGAATAATGCGAGCACCAGAAT 59.119 45.455 0.00 0.00 0.00 2.40
2048 2392 3.316308 GGAATAATGCGAGCACCAGAATT 59.684 43.478 0.00 0.00 0.00 2.17
2049 2393 4.531332 GAATAATGCGAGCACCAGAATTC 58.469 43.478 0.00 0.00 0.00 2.17
2050 2394 0.729116 AATGCGAGCACCAGAATTCG 59.271 50.000 0.00 0.00 36.23 3.34
2051 2395 0.108186 ATGCGAGCACCAGAATTCGA 60.108 50.000 0.00 0.00 35.19 3.71
2052 2396 0.320334 TGCGAGCACCAGAATTCGAA 60.320 50.000 0.00 0.00 35.19 3.71
2053 2397 0.095417 GCGAGCACCAGAATTCGAAC 59.905 55.000 0.00 0.00 35.19 3.95
2054 2398 0.721718 CGAGCACCAGAATTCGAACC 59.278 55.000 0.00 0.00 35.19 3.62
2055 2399 1.087501 GAGCACCAGAATTCGAACCC 58.912 55.000 0.00 0.00 0.00 4.11
2056 2400 0.693049 AGCACCAGAATTCGAACCCT 59.307 50.000 0.00 0.00 0.00 4.34
2057 2401 0.804989 GCACCAGAATTCGAACCCTG 59.195 55.000 17.17 17.17 0.00 4.45
2059 2403 3.957288 CCAGAATTCGAACCCTGGT 57.043 52.632 27.13 0.80 40.84 4.00
2060 2404 1.453155 CCAGAATTCGAACCCTGGTG 58.547 55.000 27.13 12.19 40.84 4.17
2061 2405 1.003118 CCAGAATTCGAACCCTGGTGA 59.997 52.381 27.13 0.00 40.84 4.02
2062 2406 2.350522 CAGAATTCGAACCCTGGTGAG 58.649 52.381 16.61 0.00 0.00 3.51
2063 2407 1.978580 AGAATTCGAACCCTGGTGAGT 59.021 47.619 0.00 0.00 0.00 3.41
2064 2408 2.372172 AGAATTCGAACCCTGGTGAGTT 59.628 45.455 0.00 0.00 0.00 3.01
2065 2409 2.185004 ATTCGAACCCTGGTGAGTTG 57.815 50.000 0.00 0.00 0.00 3.16
2066 2410 0.107831 TTCGAACCCTGGTGAGTTGG 59.892 55.000 0.00 0.00 0.00 3.77
2067 2411 1.302511 CGAACCCTGGTGAGTTGGG 60.303 63.158 0.00 0.00 46.07 4.12
2068 2412 1.074951 GAACCCTGGTGAGTTGGGG 59.925 63.158 0.00 0.00 44.97 4.96
2069 2413 1.386772 AACCCTGGTGAGTTGGGGA 60.387 57.895 3.72 0.00 44.97 4.81
2070 2414 0.776080 AACCCTGGTGAGTTGGGGAT 60.776 55.000 3.72 0.00 44.97 3.85
2071 2415 0.120377 ACCCTGGTGAGTTGGGGATA 59.880 55.000 3.72 0.00 44.97 2.59
2072 2416 0.546598 CCCTGGTGAGTTGGGGATAC 59.453 60.000 0.00 0.00 41.25 2.24
2087 2431 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
2088 2432 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
2089 2433 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
2090 2434 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
2091 2435 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
2092 2436 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
2093 2437 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
2094 2438 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
2095 2439 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
2096 2440 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
2097 2441 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
2098 2442 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
2099 2443 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
2100 2444 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
2101 2445 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
2102 2446 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
2103 2447 2.158667 CCTAACCAACTCAACCACAGGT 60.159 50.000 0.00 0.00 37.65 4.00
2112 2456 3.412722 AACCACAGGTTGATTCGCA 57.587 47.368 0.00 0.00 45.07 5.10
2113 2457 1.909700 AACCACAGGTTGATTCGCAT 58.090 45.000 0.00 0.00 45.07 4.73
2114 2458 1.453155 ACCACAGGTTGATTCGCATC 58.547 50.000 0.00 0.00 27.29 3.91
2115 2459 0.374758 CCACAGGTTGATTCGCATCG 59.625 55.000 0.00 0.00 31.08 3.84
2116 2460 1.358877 CACAGGTTGATTCGCATCGA 58.641 50.000 0.00 0.00 31.08 3.59
2117 2461 1.061131 CACAGGTTGATTCGCATCGAC 59.939 52.381 6.87 6.87 41.63 4.20
2118 2462 0.298707 CAGGTTGATTCGCATCGACG 59.701 55.000 8.99 0.00 42.86 5.12
2119 2463 1.012234 GGTTGATTCGCATCGACGC 60.012 57.895 8.99 0.00 42.86 5.19
2120 2464 1.692148 GGTTGATTCGCATCGACGCA 61.692 55.000 3.68 0.00 42.86 5.24
2121 2465 0.301687 GTTGATTCGCATCGACGCAT 59.698 50.000 3.68 0.00 34.64 4.73
2122 2466 1.006086 TTGATTCGCATCGACGCATT 58.994 45.000 3.68 0.00 34.89 3.56
2218 2563 4.556233 GAATAAAACTTGCCCTGGTTCAC 58.444 43.478 0.00 0.00 0.00 3.18
2261 2606 2.480419 ACTGCACGCAGAAAAGATGTAC 59.520 45.455 25.09 0.00 46.30 2.90
2262 2607 1.804151 TGCACGCAGAAAAGATGTACC 59.196 47.619 0.00 0.00 0.00 3.34
2263 2608 1.130561 GCACGCAGAAAAGATGTACCC 59.869 52.381 0.00 0.00 0.00 3.69
2264 2609 2.422597 CACGCAGAAAAGATGTACCCA 58.577 47.619 0.00 0.00 0.00 4.51
2265 2610 2.159627 CACGCAGAAAAGATGTACCCAC 59.840 50.000 0.00 0.00 0.00 4.61
2266 2611 1.393539 CGCAGAAAAGATGTACCCACG 59.606 52.381 0.00 0.00 0.00 4.94
2267 2612 1.737793 GCAGAAAAGATGTACCCACGG 59.262 52.381 0.00 0.00 0.00 4.94
2294 2665 4.022503 ACGCTAAGGAATCCGAGGTTATAC 60.023 45.833 6.42 0.00 0.00 1.47
2320 2698 3.428180 CGTCCACTGGATCAGAGTGTAAG 60.428 52.174 18.08 6.02 39.43 2.34
2361 2739 6.037786 ACGAATCGTATGAATATCATGGGT 57.962 37.500 6.47 0.00 38.73 4.51
2362 2740 5.869344 ACGAATCGTATGAATATCATGGGTG 59.131 40.000 6.47 0.00 38.73 4.61
2363 2741 5.291858 CGAATCGTATGAATATCATGGGTGG 59.708 44.000 3.17 0.00 37.70 4.61
2364 2742 4.551702 TCGTATGAATATCATGGGTGGG 57.448 45.455 3.17 0.00 37.70 4.61
2394 2772 6.226787 GCAACTTAGATGCTATGGTGATACT 58.773 40.000 7.23 0.00 40.64 2.12
2404 2782 4.757149 GCTATGGTGATACTAGCTTTTGGG 59.243 45.833 0.00 0.00 35.95 4.12
2405 2783 5.454755 GCTATGGTGATACTAGCTTTTGGGA 60.455 44.000 0.00 0.00 35.95 4.37
2432 2810 3.431486 GGATCTCCGATTCTATGGCATCC 60.431 52.174 1.65 0.00 31.33 3.51
2447 2825 3.119531 TGGCATCCGAGCAATTTTTGTAG 60.120 43.478 0.00 0.00 35.83 2.74
2452 2830 6.751888 GCATCCGAGCAATTTTTGTAGTTATT 59.248 34.615 0.00 0.00 0.00 1.40
2454 2832 7.441890 TCCGAGCAATTTTTGTAGTTATTCA 57.558 32.000 0.00 0.00 0.00 2.57
2481 2859 2.586425 TCAAACTCCCTGAAGGCTTTG 58.414 47.619 0.00 0.00 35.67 2.77
2512 2891 4.622701 AATCAGACATTTTTAGAGCCGC 57.377 40.909 0.00 0.00 0.00 6.53
2535 2914 3.469006 TGGATCTAAGATCCAGGAGGTCT 59.531 47.826 15.76 0.00 42.81 3.85
2541 2920 6.868826 TCTAAGATCCAGGAGGTCTTATGAT 58.131 40.000 11.50 0.00 37.14 2.45
2554 2933 9.562408 GGAGGTCTTATGATCGTATCATCTATA 57.438 37.037 11.87 0.00 46.62 1.31
2585 2965 3.220110 CACTGGCATTCTTCCTGCATAT 58.780 45.455 0.00 0.00 41.47 1.78
2604 2984 6.986231 TGCATATCAAAGTAACAGATCATCGT 59.014 34.615 0.00 0.00 0.00 3.73
2649 3029 5.388371 GCATCTTCAAACGCAATTACCAAAC 60.388 40.000 0.00 0.00 0.00 2.93
2650 3030 4.283678 TCTTCAAACGCAATTACCAAACG 58.716 39.130 0.00 0.00 0.00 3.60
2652 3032 2.617308 TCAAACGCAATTACCAAACGGA 59.383 40.909 0.00 0.00 0.00 4.69
2653 3033 2.691984 AACGCAATTACCAAACGGAC 57.308 45.000 0.00 0.00 0.00 4.79
2654 3034 0.513820 ACGCAATTACCAAACGGACG 59.486 50.000 0.00 0.00 0.00 4.79
2655 3035 0.791610 CGCAATTACCAAACGGACGC 60.792 55.000 0.00 0.00 0.00 5.19
2680 3060 1.299468 CGTCTGCGGACATCTAGCC 60.299 63.158 24.91 0.00 42.21 3.93
2682 3062 0.175760 GTCTGCGGACATCTAGCCAA 59.824 55.000 21.02 0.00 41.75 4.52
2683 3063 0.461548 TCTGCGGACATCTAGCCAAG 59.538 55.000 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.807045 CTGCCGCGACTGACTGAC 60.807 66.667 8.23 0.00 0.00 3.51
1 2 3.295273 ACTGCCGCGACTGACTGA 61.295 61.111 8.23 0.00 0.00 3.41
2 3 3.108289 CACTGCCGCGACTGACTG 61.108 66.667 8.23 0.00 0.00 3.51
5 6 4.299547 AAGCACTGCCGCGACTGA 62.300 61.111 8.23 0.00 36.85 3.41
6 7 4.081030 CAAGCACTGCCGCGACTG 62.081 66.667 8.23 1.47 36.85 3.51
13 14 2.360801 TGTTTAAGAACCAAGCACTGCC 59.639 45.455 0.00 0.00 34.80 4.85
16 17 4.523083 TGTCTGTTTAAGAACCAAGCACT 58.477 39.130 0.00 0.00 36.40 4.40
20 21 3.607078 GCGCTGTCTGTTTAAGAACCAAG 60.607 47.826 0.00 0.00 36.40 3.61
21 22 2.289547 GCGCTGTCTGTTTAAGAACCAA 59.710 45.455 0.00 0.00 36.40 3.67
37 38 1.633171 GCACGTCATCTAAGCGCTG 59.367 57.895 12.58 0.00 0.00 5.18
41 42 0.230769 GCATCGCACGTCATCTAAGC 59.769 55.000 0.00 0.00 0.00 3.09
45 46 2.202932 GGGCATCGCACGTCATCT 60.203 61.111 0.00 0.00 0.00 2.90
92 93 7.446013 CCTCCTCGAGTTCTCTACTAATGTAAT 59.554 40.741 12.31 0.00 37.17 1.89
99 100 5.432680 TTTCCTCCTCGAGTTCTCTACTA 57.567 43.478 12.31 0.00 37.17 1.82
100 101 4.304048 TTTCCTCCTCGAGTTCTCTACT 57.696 45.455 12.31 0.00 40.71 2.57
101 102 5.047872 ACTTTTTCCTCCTCGAGTTCTCTAC 60.048 44.000 12.31 0.00 0.00 2.59
118 119 3.128764 GCCATGCCACTAGGTACTTTTTC 59.871 47.826 0.00 0.00 41.75 2.29
120 121 2.723273 GCCATGCCACTAGGTACTTTT 58.277 47.619 0.00 0.00 41.75 2.27
121 122 2.420058 GCCATGCCACTAGGTACTTT 57.580 50.000 0.00 0.00 41.75 2.66
152 153 8.932791 CGCCGTCCTATACTATTATTCAAAATT 58.067 33.333 0.00 0.00 0.00 1.82
153 154 7.064253 GCGCCGTCCTATACTATTATTCAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
215 216 4.649705 TTGAGGCCCCGACCAGGA 62.650 66.667 0.00 0.00 45.00 3.86
223 252 1.002011 GTTGAGGTCTTGAGGCCCC 60.002 63.158 0.00 0.00 0.00 5.80
227 256 2.271800 GTATGCGTTGAGGTCTTGAGG 58.728 52.381 0.00 0.00 0.00 3.86
228 257 2.926200 CTGTATGCGTTGAGGTCTTGAG 59.074 50.000 0.00 0.00 0.00 3.02
229 258 2.299013 ACTGTATGCGTTGAGGTCTTGA 59.701 45.455 0.00 0.00 0.00 3.02
230 259 2.413112 CACTGTATGCGTTGAGGTCTTG 59.587 50.000 0.00 0.00 0.00 3.02
231 260 2.688507 CACTGTATGCGTTGAGGTCTT 58.311 47.619 0.00 0.00 0.00 3.01
232 261 1.673033 GCACTGTATGCGTTGAGGTCT 60.673 52.381 0.00 0.00 46.55 3.85
233 262 0.721718 GCACTGTATGCGTTGAGGTC 59.278 55.000 0.00 0.00 46.55 3.85
234 263 2.840974 GCACTGTATGCGTTGAGGT 58.159 52.632 0.00 0.00 46.55 3.85
252 289 1.723003 GTAACCGCGGTCAAAGTGTAG 59.277 52.381 34.29 0.00 0.00 2.74
265 302 3.572584 CTTATGGATACCGAGTAACCGC 58.427 50.000 6.09 0.00 34.32 5.68
312 349 4.335416 TCCCACTCTAGGCAATGAAAAAG 58.665 43.478 0.00 0.00 0.00 2.27
337 374 2.793790 CAGTAATAGAGCAGAGCGCAAG 59.206 50.000 11.47 0.00 46.13 4.01
338 375 2.166459 ACAGTAATAGAGCAGAGCGCAA 59.834 45.455 11.47 0.00 46.13 4.85
339 376 1.751351 ACAGTAATAGAGCAGAGCGCA 59.249 47.619 11.47 0.00 46.13 6.09
340 377 2.500509 ACAGTAATAGAGCAGAGCGC 57.499 50.000 0.00 0.00 42.91 5.92
341 378 4.627467 ACAAAACAGTAATAGAGCAGAGCG 59.373 41.667 0.00 0.00 0.00 5.03
355 407 6.215845 GCACCATCAGAATAAACAAAACAGT 58.784 36.000 0.00 0.00 0.00 3.55
407 459 1.869503 CGTAAAGCATCAGCAACGTG 58.130 50.000 0.00 0.00 45.49 4.49
589 682 2.225727 GCAACACCACAGCTAGGTTTAC 59.774 50.000 7.27 0.00 37.23 2.01
596 689 2.940994 TTTAGGCAACACCACAGCTA 57.059 45.000 0.00 0.00 43.14 3.32
693 985 2.674852 CAGACAATTCGGGATGACACAG 59.325 50.000 0.00 0.00 0.00 3.66
695 987 2.673368 GTCAGACAATTCGGGATGACAC 59.327 50.000 0.00 0.00 37.56 3.67
696 988 2.673893 CGTCAGACAATTCGGGATGACA 60.674 50.000 0.41 0.00 37.50 3.58
885 1179 3.364621 GTCGTATTTACCTTTTGCGTCGA 59.635 43.478 0.00 0.00 0.00 4.20
886 1180 3.121611 TGTCGTATTTACCTTTTGCGTCG 59.878 43.478 0.00 0.00 0.00 5.12
887 1181 4.650545 TGTCGTATTTACCTTTTGCGTC 57.349 40.909 0.00 0.00 0.00 5.19
888 1182 5.616488 AATGTCGTATTTACCTTTTGCGT 57.384 34.783 0.00 0.00 0.00 5.24
889 1183 9.365311 CTATAAATGTCGTATTTACCTTTTGCG 57.635 33.333 8.88 0.00 0.00 4.85
1146 1455 1.238439 CTGTCTTTGTGGCGTCCATT 58.762 50.000 1.90 0.00 35.28 3.16
1783 2123 2.801063 GTCGATGGACATGGCATTTTG 58.199 47.619 0.00 0.00 42.91 2.44
1811 2155 6.695278 GCTTGTGTTTGTACTGATGCTAAAAA 59.305 34.615 0.00 0.00 0.00 1.94
1812 2156 6.205784 GCTTGTGTTTGTACTGATGCTAAAA 58.794 36.000 0.00 0.00 0.00 1.52
1813 2157 5.559991 CGCTTGTGTTTGTACTGATGCTAAA 60.560 40.000 0.00 0.00 0.00 1.85
1814 2158 4.084066 CGCTTGTGTTTGTACTGATGCTAA 60.084 41.667 0.00 0.00 0.00 3.09
1815 2159 3.431912 CGCTTGTGTTTGTACTGATGCTA 59.568 43.478 0.00 0.00 0.00 3.49
1816 2160 2.224079 CGCTTGTGTTTGTACTGATGCT 59.776 45.455 0.00 0.00 0.00 3.79
1817 2161 2.574322 CGCTTGTGTTTGTACTGATGC 58.426 47.619 0.00 0.00 0.00 3.91
1818 2162 2.224079 AGCGCTTGTGTTTGTACTGATG 59.776 45.455 2.64 0.00 0.00 3.07
1819 2163 2.480419 GAGCGCTTGTGTTTGTACTGAT 59.520 45.455 13.26 0.00 0.00 2.90
1820 2164 1.864711 GAGCGCTTGTGTTTGTACTGA 59.135 47.619 13.26 0.00 0.00 3.41
1821 2165 1.597195 TGAGCGCTTGTGTTTGTACTG 59.403 47.619 13.26 0.00 0.00 2.74
1822 2166 1.948104 TGAGCGCTTGTGTTTGTACT 58.052 45.000 13.26 0.00 0.00 2.73
1823 2167 2.969443 ATGAGCGCTTGTGTTTGTAC 57.031 45.000 13.26 0.00 0.00 2.90
1824 2168 5.062934 GTGTATATGAGCGCTTGTGTTTGTA 59.937 40.000 13.26 0.00 0.00 2.41
1825 2169 4.000325 TGTATATGAGCGCTTGTGTTTGT 59.000 39.130 13.26 0.00 0.00 2.83
1826 2170 4.334443 GTGTATATGAGCGCTTGTGTTTG 58.666 43.478 13.26 0.00 0.00 2.93
1827 2171 3.062099 CGTGTATATGAGCGCTTGTGTTT 59.938 43.478 13.26 0.00 0.00 2.83
1828 2172 2.603110 CGTGTATATGAGCGCTTGTGTT 59.397 45.455 13.26 0.00 0.00 3.32
1829 2173 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
1830 2174 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
1831 2175 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
1832 2176 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
1833 2177 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
1834 2178 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
1837 2181 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
1838 2182 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
1839 2183 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
1840 2184 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
1841 2185 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
1842 2186 3.636282 ATGAGTGTATGCGCGTGTATA 57.364 42.857 13.61 2.40 0.00 1.47
1843 2187 2.509052 ATGAGTGTATGCGCGTGTAT 57.491 45.000 13.61 4.63 0.00 2.29
1844 2188 2.190161 GAATGAGTGTATGCGCGTGTA 58.810 47.619 13.61 0.00 0.00 2.90
1845 2189 0.999406 GAATGAGTGTATGCGCGTGT 59.001 50.000 13.61 0.00 0.00 4.49
1846 2190 0.301687 GGAATGAGTGTATGCGCGTG 59.698 55.000 13.61 0.00 0.00 5.34
1847 2191 0.175760 AGGAATGAGTGTATGCGCGT 59.824 50.000 8.43 7.55 0.00 6.01
1848 2192 2.134201 TAGGAATGAGTGTATGCGCG 57.866 50.000 0.00 0.00 0.00 6.86
1849 2193 3.653344 TCATAGGAATGAGTGTATGCGC 58.347 45.455 0.00 0.00 37.20 6.09
1850 2194 4.148871 CGTTCATAGGAATGAGTGTATGCG 59.851 45.833 3.19 0.00 42.97 4.73
1851 2195 4.084328 GCGTTCATAGGAATGAGTGTATGC 60.084 45.833 13.33 0.00 42.97 3.14
1852 2196 5.049828 TGCGTTCATAGGAATGAGTGTATG 58.950 41.667 13.33 0.00 42.97 2.39
1853 2197 5.050490 GTGCGTTCATAGGAATGAGTGTAT 58.950 41.667 13.33 0.00 42.97 2.29
1854 2198 4.081917 TGTGCGTTCATAGGAATGAGTGTA 60.082 41.667 13.33 0.00 42.97 2.90
1855 2199 3.262420 GTGCGTTCATAGGAATGAGTGT 58.738 45.455 13.33 0.00 42.97 3.55
1856 2200 3.261580 TGTGCGTTCATAGGAATGAGTG 58.738 45.455 13.33 0.00 42.97 3.51
1857 2201 3.610040 TGTGCGTTCATAGGAATGAGT 57.390 42.857 13.33 0.00 42.97 3.41
1858 2202 5.049828 TGTATGTGCGTTCATAGGAATGAG 58.950 41.667 13.33 0.26 42.97 2.90
1859 2203 4.808895 GTGTATGTGCGTTCATAGGAATGA 59.191 41.667 13.33 0.00 41.62 2.57
1860 2204 4.570369 TGTGTATGTGCGTTCATAGGAATG 59.430 41.667 4.97 4.97 41.92 2.67
1861 2205 4.570772 GTGTGTATGTGCGTTCATAGGAAT 59.429 41.667 0.00 0.00 35.05 3.01
1862 2206 3.930229 GTGTGTATGTGCGTTCATAGGAA 59.070 43.478 0.00 0.00 32.01 3.36
1863 2207 3.056465 TGTGTGTATGTGCGTTCATAGGA 60.056 43.478 2.83 0.00 32.01 2.94
1864 2208 3.258228 TGTGTGTATGTGCGTTCATAGG 58.742 45.455 2.83 0.00 32.01 2.57
1865 2209 4.025730 GGATGTGTGTATGTGCGTTCATAG 60.026 45.833 2.83 0.00 32.01 2.23
1866 2210 3.868661 GGATGTGTGTATGTGCGTTCATA 59.131 43.478 0.00 0.00 0.00 2.15
1867 2211 2.677836 GGATGTGTGTATGTGCGTTCAT 59.322 45.455 0.87 0.87 0.00 2.57
1868 2212 2.073056 GGATGTGTGTATGTGCGTTCA 58.927 47.619 0.00 0.00 0.00 3.18
1869 2213 2.346803 AGGATGTGTGTATGTGCGTTC 58.653 47.619 0.00 0.00 0.00 3.95
1870 2214 2.472695 AGGATGTGTGTATGTGCGTT 57.527 45.000 0.00 0.00 0.00 4.84
1871 2215 2.418197 GGTAGGATGTGTGTATGTGCGT 60.418 50.000 0.00 0.00 0.00 5.24
1872 2216 2.201732 GGTAGGATGTGTGTATGTGCG 58.798 52.381 0.00 0.00 0.00 5.34
1873 2217 2.170607 AGGGTAGGATGTGTGTATGTGC 59.829 50.000 0.00 0.00 0.00 4.57
1874 2218 4.487714 AAGGGTAGGATGTGTGTATGTG 57.512 45.455 0.00 0.00 0.00 3.21
1875 2219 5.903010 TCATAAGGGTAGGATGTGTGTATGT 59.097 40.000 0.00 0.00 0.00 2.29
1876 2220 6.419484 TCATAAGGGTAGGATGTGTGTATG 57.581 41.667 0.00 0.00 0.00 2.39
1877 2221 5.012148 GCTCATAAGGGTAGGATGTGTGTAT 59.988 44.000 0.00 0.00 0.00 2.29
1878 2222 4.344102 GCTCATAAGGGTAGGATGTGTGTA 59.656 45.833 0.00 0.00 0.00 2.90
1879 2223 3.134804 GCTCATAAGGGTAGGATGTGTGT 59.865 47.826 0.00 0.00 0.00 3.72
1880 2224 3.134623 TGCTCATAAGGGTAGGATGTGTG 59.865 47.826 0.00 0.00 0.00 3.82
1881 2225 3.134804 GTGCTCATAAGGGTAGGATGTGT 59.865 47.826 0.00 0.00 0.00 3.72
1882 2226 3.495100 GGTGCTCATAAGGGTAGGATGTG 60.495 52.174 0.00 0.00 0.00 3.21
1883 2227 2.706190 GGTGCTCATAAGGGTAGGATGT 59.294 50.000 0.00 0.00 0.00 3.06
1884 2228 2.975489 AGGTGCTCATAAGGGTAGGATG 59.025 50.000 0.00 0.00 0.00 3.51
1885 2229 3.352611 AGGTGCTCATAAGGGTAGGAT 57.647 47.619 0.00 0.00 0.00 3.24
1886 2230 2.868964 AGGTGCTCATAAGGGTAGGA 57.131 50.000 0.00 0.00 0.00 2.94
1887 2231 2.224066 CGAAGGTGCTCATAAGGGTAGG 60.224 54.545 0.00 0.00 0.00 3.18
1888 2232 2.693591 TCGAAGGTGCTCATAAGGGTAG 59.306 50.000 0.00 0.00 0.00 3.18
1889 2233 2.742348 TCGAAGGTGCTCATAAGGGTA 58.258 47.619 0.00 0.00 0.00 3.69
1890 2234 1.568504 TCGAAGGTGCTCATAAGGGT 58.431 50.000 0.00 0.00 0.00 4.34
1891 2235 2.691409 TTCGAAGGTGCTCATAAGGG 57.309 50.000 0.00 0.00 0.00 3.95
1892 2236 3.619038 GTCTTTCGAAGGTGCTCATAAGG 59.381 47.826 7.20 0.00 0.00 2.69
1893 2237 4.328440 CAGTCTTTCGAAGGTGCTCATAAG 59.672 45.833 7.20 0.00 0.00 1.73
1894 2238 4.021456 TCAGTCTTTCGAAGGTGCTCATAA 60.021 41.667 7.20 0.00 0.00 1.90
1895 2239 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
1896 2240 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
1897 2241 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
1898 2242 2.333014 CTCAGTCTTTCGAAGGTGCTC 58.667 52.381 7.20 0.00 0.00 4.26
1899 2243 1.606737 GCTCAGTCTTTCGAAGGTGCT 60.607 52.381 7.20 4.49 0.00 4.40
1900 2244 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
1901 2245 1.433534 GGCTCAGTCTTTCGAAGGTG 58.566 55.000 7.20 0.00 0.00 4.00
1902 2246 0.038159 CGGCTCAGTCTTTCGAAGGT 60.038 55.000 7.20 0.00 0.00 3.50
1903 2247 0.243907 TCGGCTCAGTCTTTCGAAGG 59.756 55.000 0.00 0.00 0.00 3.46
1904 2248 1.335964 TGTCGGCTCAGTCTTTCGAAG 60.336 52.381 0.00 0.00 0.00 3.79
1905 2249 0.671796 TGTCGGCTCAGTCTTTCGAA 59.328 50.000 0.00 0.00 0.00 3.71
1906 2250 0.888619 ATGTCGGCTCAGTCTTTCGA 59.111 50.000 0.00 0.00 0.00 3.71
1907 2251 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
1908 2252 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
1909 2253 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
1910 2254 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
1911 2255 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
1912 2256 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
1913 2257 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
1914 2258 4.022503 TCTCAAGATGATATGTCGGCTCAG 60.023 45.833 0.00 0.00 0.00 3.35
1915 2259 3.891366 TCTCAAGATGATATGTCGGCTCA 59.109 43.478 0.00 0.00 0.00 4.26
1916 2260 4.511617 TCTCAAGATGATATGTCGGCTC 57.488 45.455 0.00 0.00 0.00 4.70
1917 2261 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
1918 2262 6.183360 CGTAAATCTCAAGATGATATGTCGGC 60.183 42.308 0.00 0.00 34.49 5.54
1919 2263 7.084486 TCGTAAATCTCAAGATGATATGTCGG 58.916 38.462 0.00 0.00 34.49 4.79
1920 2264 8.507470 TTCGTAAATCTCAAGATGATATGTCG 57.493 34.615 0.00 0.00 34.49 4.35
1921 2265 9.469807 ACTTCGTAAATCTCAAGATGATATGTC 57.530 33.333 0.00 0.00 34.49 3.06
1922 2266 9.469807 GACTTCGTAAATCTCAAGATGATATGT 57.530 33.333 0.00 0.00 34.49 2.29
1923 2267 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
1924 2268 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
1925 2269 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
1926 2270 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
1927 2271 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
1928 2272 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
1929 2273 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
1930 2274 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
1931 2275 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
1932 2276 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
1933 2277 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
1934 2278 5.027099 GTCTACGGTGACTTCGTAAATCTC 58.973 45.833 0.00 0.00 41.62 2.75
1935 2279 4.436584 CGTCTACGGTGACTTCGTAAATCT 60.437 45.833 8.11 0.00 41.62 2.40
1936 2280 3.782893 CGTCTACGGTGACTTCGTAAATC 59.217 47.826 8.11 0.00 41.62 2.17
1937 2281 3.751621 CGTCTACGGTGACTTCGTAAAT 58.248 45.455 8.11 0.00 41.62 1.40
1938 2282 2.665519 GCGTCTACGGTGACTTCGTAAA 60.666 50.000 4.49 0.00 41.62 2.01
1939 2283 1.135972 GCGTCTACGGTGACTTCGTAA 60.136 52.381 4.49 0.00 41.62 3.18
1940 2284 0.443869 GCGTCTACGGTGACTTCGTA 59.556 55.000 4.49 0.00 41.38 3.43
1941 2285 1.208614 GCGTCTACGGTGACTTCGT 59.791 57.895 4.49 0.00 43.64 3.85
1942 2286 1.513586 GGCGTCTACGGTGACTTCG 60.514 63.158 4.49 0.00 40.23 3.79
1943 2287 0.179169 GAGGCGTCTACGGTGACTTC 60.179 60.000 4.49 0.00 40.23 3.01
1944 2288 0.892358 TGAGGCGTCTACGGTGACTT 60.892 55.000 8.06 0.00 40.23 3.01
1945 2289 0.680280 ATGAGGCGTCTACGGTGACT 60.680 55.000 8.06 0.00 40.23 3.41
1946 2290 0.248539 GATGAGGCGTCTACGGTGAC 60.249 60.000 8.06 0.00 40.23 3.67
1947 2291 0.678684 TGATGAGGCGTCTACGGTGA 60.679 55.000 8.06 0.00 40.23 4.02
1948 2292 0.385751 ATGATGAGGCGTCTACGGTG 59.614 55.000 8.06 0.00 40.23 4.94
1949 2293 1.112113 AATGATGAGGCGTCTACGGT 58.888 50.000 8.06 0.00 40.23 4.83
1950 2294 1.067060 TCAATGATGAGGCGTCTACGG 59.933 52.381 8.06 0.00 40.23 4.02
1951 2295 2.120232 GTCAATGATGAGGCGTCTACG 58.880 52.381 8.06 0.00 38.20 3.51
1952 2296 2.120232 CGTCAATGATGAGGCGTCTAC 58.880 52.381 8.06 2.59 35.88 2.59
1953 2297 1.067060 CCGTCAATGATGAGGCGTCTA 59.933 52.381 8.06 0.00 39.54 2.59
1954 2298 0.179100 CCGTCAATGATGAGGCGTCT 60.179 55.000 8.06 0.00 39.54 4.18
1955 2299 1.154205 CCCGTCAATGATGAGGCGTC 61.154 60.000 3.65 0.00 39.54 5.19
1956 2300 1.153369 CCCGTCAATGATGAGGCGT 60.153 57.895 3.65 0.00 39.54 5.68
1957 2301 0.461870 TTCCCGTCAATGATGAGGCG 60.462 55.000 3.65 0.00 39.54 5.52
1958 2302 1.017387 GTTCCCGTCAATGATGAGGC 58.983 55.000 3.65 0.00 39.54 4.70
1959 2303 1.290203 CGTTCCCGTCAATGATGAGG 58.710 55.000 3.65 4.03 40.35 3.86
1960 2304 2.010145 ACGTTCCCGTCAATGATGAG 57.990 50.000 3.65 0.00 46.28 2.90
1974 2318 2.762535 TTCAATGGGAGGAGACGTTC 57.237 50.000 0.00 0.00 0.00 3.95
1975 2319 2.876079 GCTTTCAATGGGAGGAGACGTT 60.876 50.000 0.00 0.00 0.00 3.99
1976 2320 1.339151 GCTTTCAATGGGAGGAGACGT 60.339 52.381 0.00 0.00 0.00 4.34
1977 2321 1.373570 GCTTTCAATGGGAGGAGACG 58.626 55.000 0.00 0.00 0.00 4.18
1978 2322 1.373570 CGCTTTCAATGGGAGGAGAC 58.626 55.000 0.00 0.00 0.00 3.36
1979 2323 0.392998 GCGCTTTCAATGGGAGGAGA 60.393 55.000 0.00 0.00 0.00 3.71
1980 2324 0.677731 TGCGCTTTCAATGGGAGGAG 60.678 55.000 9.73 0.00 0.00 3.69
1981 2325 0.034186 ATGCGCTTTCAATGGGAGGA 60.034 50.000 9.73 0.00 0.00 3.71
1982 2326 0.383231 GATGCGCTTTCAATGGGAGG 59.617 55.000 9.73 0.00 0.00 4.30
1983 2327 0.028505 CGATGCGCTTTCAATGGGAG 59.971 55.000 9.73 0.00 0.00 4.30
1984 2328 2.097444 CGATGCGCTTTCAATGGGA 58.903 52.632 9.73 0.00 0.00 4.37
1985 2329 4.696078 CGATGCGCTTTCAATGGG 57.304 55.556 9.73 0.00 0.00 4.00
1996 2340 0.373370 TCAGAATTTTCGGCGATGCG 59.627 50.000 11.76 0.00 0.00 4.73
1997 2341 2.542766 TTCAGAATTTTCGGCGATGC 57.457 45.000 11.76 0.00 0.00 3.91
1998 2342 7.684062 ATTTATTTCAGAATTTTCGGCGATG 57.316 32.000 11.76 4.79 0.00 3.84
1999 2343 8.402472 TGTATTTATTTCAGAATTTTCGGCGAT 58.598 29.630 11.76 0.00 0.00 4.58
2000 2344 7.753659 TGTATTTATTTCAGAATTTTCGGCGA 58.246 30.769 4.99 4.99 0.00 5.54
2001 2345 7.165812 CCTGTATTTATTTCAGAATTTTCGGCG 59.834 37.037 0.00 0.00 0.00 6.46
2002 2346 8.188139 TCCTGTATTTATTTCAGAATTTTCGGC 58.812 33.333 0.00 0.00 0.00 5.54
2011 2355 9.554395 TCGCATTATTCCTGTATTTATTTCAGA 57.446 29.630 0.00 0.00 0.00 3.27
2012 2356 9.817365 CTCGCATTATTCCTGTATTTATTTCAG 57.183 33.333 0.00 0.00 0.00 3.02
2013 2357 8.289618 GCTCGCATTATTCCTGTATTTATTTCA 58.710 33.333 0.00 0.00 0.00 2.69
2014 2358 8.289618 TGCTCGCATTATTCCTGTATTTATTTC 58.710 33.333 0.00 0.00 0.00 2.17
2015 2359 8.076178 GTGCTCGCATTATTCCTGTATTTATTT 58.924 33.333 0.00 0.00 0.00 1.40
2016 2360 7.308589 GGTGCTCGCATTATTCCTGTATTTATT 60.309 37.037 0.00 0.00 0.00 1.40
2017 2361 6.149474 GGTGCTCGCATTATTCCTGTATTTAT 59.851 38.462 0.00 0.00 0.00 1.40
2018 2362 5.468746 GGTGCTCGCATTATTCCTGTATTTA 59.531 40.000 0.00 0.00 0.00 1.40
2019 2363 4.275936 GGTGCTCGCATTATTCCTGTATTT 59.724 41.667 0.00 0.00 0.00 1.40
2020 2364 3.815401 GGTGCTCGCATTATTCCTGTATT 59.185 43.478 0.00 0.00 0.00 1.89
2021 2365 3.181455 TGGTGCTCGCATTATTCCTGTAT 60.181 43.478 0.00 0.00 0.00 2.29
2022 2366 2.169561 TGGTGCTCGCATTATTCCTGTA 59.830 45.455 0.00 0.00 0.00 2.74
2023 2367 1.065491 TGGTGCTCGCATTATTCCTGT 60.065 47.619 0.00 0.00 0.00 4.00
2024 2368 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
2025 2369 1.486310 TCTGGTGCTCGCATTATTCCT 59.514 47.619 0.00 0.00 0.00 3.36
2026 2370 1.953559 TCTGGTGCTCGCATTATTCC 58.046 50.000 0.00 0.00 0.00 3.01
2027 2371 4.531332 GAATTCTGGTGCTCGCATTATTC 58.469 43.478 0.00 0.00 0.00 1.75
2028 2372 3.002656 CGAATTCTGGTGCTCGCATTATT 59.997 43.478 3.52 0.00 0.00 1.40
2029 2373 2.545526 CGAATTCTGGTGCTCGCATTAT 59.454 45.455 3.52 0.00 0.00 1.28
2030 2374 1.933181 CGAATTCTGGTGCTCGCATTA 59.067 47.619 3.52 0.00 0.00 1.90
2031 2375 0.729116 CGAATTCTGGTGCTCGCATT 59.271 50.000 3.52 0.00 0.00 3.56
2032 2376 0.108186 TCGAATTCTGGTGCTCGCAT 60.108 50.000 3.52 0.00 0.00 4.73
2033 2377 0.320334 TTCGAATTCTGGTGCTCGCA 60.320 50.000 3.52 0.00 0.00 5.10
2034 2378 0.095417 GTTCGAATTCTGGTGCTCGC 59.905 55.000 0.00 0.00 0.00 5.03
2035 2379 0.721718 GGTTCGAATTCTGGTGCTCG 59.278 55.000 0.00 0.00 0.00 5.03
2036 2380 1.087501 GGGTTCGAATTCTGGTGCTC 58.912 55.000 0.00 0.00 0.00 4.26
2037 2381 0.693049 AGGGTTCGAATTCTGGTGCT 59.307 50.000 0.00 0.00 0.00 4.40
2038 2382 0.804989 CAGGGTTCGAATTCTGGTGC 59.195 55.000 17.57 0.00 0.00 5.01
2039 2383 1.453155 CCAGGGTTCGAATTCTGGTG 58.547 55.000 27.57 13.29 41.21 4.17
2040 2384 3.957288 CCAGGGTTCGAATTCTGGT 57.043 52.632 27.57 1.89 41.21 4.00
2042 2386 2.289694 ACTCACCAGGGTTCGAATTCTG 60.290 50.000 18.10 18.10 0.00 3.02
2043 2387 1.978580 ACTCACCAGGGTTCGAATTCT 59.021 47.619 0.00 0.00 0.00 2.40
2044 2388 2.474410 ACTCACCAGGGTTCGAATTC 57.526 50.000 0.00 0.00 0.00 2.17
2045 2389 2.504367 CAACTCACCAGGGTTCGAATT 58.496 47.619 0.00 0.00 0.00 2.17
2046 2390 1.271379 CCAACTCACCAGGGTTCGAAT 60.271 52.381 0.00 0.00 0.00 3.34
2047 2391 0.107831 CCAACTCACCAGGGTTCGAA 59.892 55.000 0.00 0.00 0.00 3.71
2048 2392 1.752198 CCAACTCACCAGGGTTCGA 59.248 57.895 0.00 0.00 0.00 3.71
2049 2393 1.302511 CCCAACTCACCAGGGTTCG 60.303 63.158 0.00 0.00 37.81 3.95
2050 2394 1.074951 CCCCAACTCACCAGGGTTC 59.925 63.158 0.00 0.00 41.16 3.62
2051 2395 0.776080 ATCCCCAACTCACCAGGGTT 60.776 55.000 0.00 0.00 41.16 4.11
2052 2396 0.120377 TATCCCCAACTCACCAGGGT 59.880 55.000 0.00 0.00 41.16 4.34
2053 2397 0.546598 GTATCCCCAACTCACCAGGG 59.453 60.000 0.00 0.00 42.44 4.45
2054 2398 0.546598 GGTATCCCCAACTCACCAGG 59.453 60.000 0.00 0.00 0.00 4.45
2055 2399 1.285280 TGGTATCCCCAACTCACCAG 58.715 55.000 0.00 0.00 41.50 4.00
2056 2400 3.503974 TGGTATCCCCAACTCACCA 57.496 52.632 0.00 0.00 41.50 4.17
2064 2408 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
2065 2409 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
2066 2410 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
2067 2411 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
2068 2412 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
2069 2413 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
2070 2414 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
2071 2415 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
2072 2416 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
2073 2417 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
2074 2418 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
2075 2419 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
2076 2420 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
2077 2421 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
2078 2422 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
2079 2423 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
2080 2424 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
2081 2425 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
2082 2426 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
2083 2427 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
2084 2428 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
2085 2429 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
2094 2438 5.977888 TCGATGCGAATCAACCTGTGGTT 62.978 47.826 3.80 0.00 38.67 3.67
2095 2439 1.453155 GATGCGAATCAACCTGTGGT 58.547 50.000 0.00 0.00 37.65 4.16
2096 2440 0.374758 CGATGCGAATCAACCTGTGG 59.625 55.000 3.80 0.00 0.00 4.17
2097 2441 1.061131 GTCGATGCGAATCAACCTGTG 59.939 52.381 3.80 0.00 37.72 3.66
2098 2442 1.359848 GTCGATGCGAATCAACCTGT 58.640 50.000 3.80 0.00 37.72 4.00
2099 2443 0.298707 CGTCGATGCGAATCAACCTG 59.701 55.000 3.80 0.00 37.72 4.00
2100 2444 1.421410 GCGTCGATGCGAATCAACCT 61.421 55.000 14.88 0.00 37.72 3.50
2101 2445 1.012234 GCGTCGATGCGAATCAACC 60.012 57.895 14.88 0.00 37.72 3.77
2102 2446 0.301687 ATGCGTCGATGCGAATCAAC 59.698 50.000 23.73 0.00 37.72 3.18
2103 2447 1.006086 AATGCGTCGATGCGAATCAA 58.994 45.000 23.73 6.33 37.72 2.57
2104 2448 1.006086 AAATGCGTCGATGCGAATCA 58.994 45.000 23.73 7.09 37.72 2.57
2105 2449 2.091152 AAAATGCGTCGATGCGAATC 57.909 45.000 23.73 0.00 37.72 2.52
2106 2450 2.286184 GGTAAAATGCGTCGATGCGAAT 60.286 45.455 23.73 10.66 37.72 3.34
2107 2451 1.061421 GGTAAAATGCGTCGATGCGAA 59.939 47.619 23.73 8.63 37.72 4.70
2108 2452 0.648441 GGTAAAATGCGTCGATGCGA 59.352 50.000 23.73 13.71 37.81 5.10
2109 2453 0.650512 AGGTAAAATGCGTCGATGCG 59.349 50.000 23.73 8.13 37.81 4.73
2110 2454 1.856014 GCAGGTAAAATGCGTCGATGC 60.856 52.381 22.77 22.77 33.31 3.91
2111 2455 2.091152 GCAGGTAAAATGCGTCGATG 57.909 50.000 0.00 0.00 33.31 3.84
2118 2462 7.650834 TTATTTTCAACAGCAGGTAAAATGC 57.349 32.000 10.10 0.00 44.18 3.56
2186 2531 5.337250 GGGCAAGTTTTATTCCGGAAAGAAT 60.337 40.000 23.08 7.17 39.73 2.40
2192 2537 2.442413 CAGGGCAAGTTTTATTCCGGA 58.558 47.619 0.00 0.00 0.00 5.14
2218 2563 7.433425 GCAGTATAAAGATTTTAGCTTTGCTGG 59.567 37.037 0.00 0.00 40.10 4.85
2263 2608 2.869503 ATTCCTTAGCGTGGGCCGTG 62.870 60.000 0.00 0.00 41.24 4.94
2264 2609 2.588856 GATTCCTTAGCGTGGGCCGT 62.589 60.000 0.00 0.00 41.24 5.68
2265 2610 1.887707 GATTCCTTAGCGTGGGCCG 60.888 63.158 0.00 0.00 41.24 6.13
2266 2611 1.526225 GGATTCCTTAGCGTGGGCC 60.526 63.158 0.00 0.00 41.24 5.80
2267 2612 1.887707 CGGATTCCTTAGCGTGGGC 60.888 63.158 0.30 0.00 40.37 5.36
2294 2665 0.176449 TCTGATCCAGTGGACGCATG 59.824 55.000 15.86 9.80 32.98 4.06
2320 2698 0.505655 GTCAGGTACACGCAAACGAC 59.494 55.000 0.00 0.00 43.93 4.34
2361 2739 0.618458 ATCTAAGTTGCCGAAGCCCA 59.382 50.000 0.00 0.00 38.69 5.36
2362 2740 1.017387 CATCTAAGTTGCCGAAGCCC 58.983 55.000 0.00 0.00 38.69 5.19
2363 2741 0.378610 GCATCTAAGTTGCCGAAGCC 59.621 55.000 0.00 0.00 38.69 4.35
2364 2742 1.373570 AGCATCTAAGTTGCCGAAGC 58.626 50.000 0.00 0.00 41.06 3.86
2394 2772 2.919602 AGATCCAACCTCCCAAAAGCTA 59.080 45.455 0.00 0.00 0.00 3.32
2404 2782 4.322349 CCATAGAATCGGAGATCCAACCTC 60.322 50.000 0.00 0.00 45.12 3.85
2405 2783 3.580458 CCATAGAATCGGAGATCCAACCT 59.420 47.826 0.00 0.00 45.12 3.50
2417 2795 1.337167 TGCTCGGATGCCATAGAATCG 60.337 52.381 0.00 0.00 0.00 3.34
2421 2799 2.936919 AATTGCTCGGATGCCATAGA 57.063 45.000 0.00 0.00 0.00 1.98
2452 2830 6.071391 GCCTTCAGGGAGTTTGAAAATTATGA 60.071 38.462 0.00 0.00 34.41 2.15
2454 2832 6.019108 AGCCTTCAGGGAGTTTGAAAATTAT 58.981 36.000 0.00 0.00 34.41 1.28
2461 2839 2.586425 CAAAGCCTTCAGGGAGTTTGA 58.414 47.619 0.00 0.00 40.27 2.69
2502 2881 3.296854 TCTTAGATCCAGCGGCTCTAAA 58.703 45.455 16.25 8.96 39.10 1.85
2504 2883 2.658807 TCTTAGATCCAGCGGCTCTA 57.341 50.000 0.00 0.00 30.34 2.43
2505 2884 1.892474 GATCTTAGATCCAGCGGCTCT 59.108 52.381 10.93 0.00 32.58 4.09
2541 2920 3.939592 CTCCCGCACTATAGATGATACGA 59.060 47.826 6.78 0.00 0.00 3.43
2567 2946 3.581265 TGATATGCAGGAAGAATGCCA 57.419 42.857 0.00 0.00 43.18 4.92
2568 2947 4.340381 ACTTTGATATGCAGGAAGAATGCC 59.660 41.667 0.00 0.00 43.18 4.40
2570 2949 7.988737 TGTTACTTTGATATGCAGGAAGAATG 58.011 34.615 0.00 0.00 0.00 2.67
2585 2965 6.811665 CCACTTACGATGATCTGTTACTTTGA 59.188 38.462 0.00 0.00 0.00 2.69
2623 3003 4.098416 GGTAATTGCGTTTGAAGATGCTC 58.902 43.478 0.00 0.00 32.75 4.26
2625 3005 3.832276 TGGTAATTGCGTTTGAAGATGC 58.168 40.909 0.00 0.00 0.00 3.91
2629 3009 3.423867 CCGTTTGGTAATTGCGTTTGAAG 59.576 43.478 0.00 0.00 0.00 3.02
2631 3011 2.617308 TCCGTTTGGTAATTGCGTTTGA 59.383 40.909 0.00 0.00 36.30 2.69
2641 3021 2.032376 GGGGCGTCCGTTTGGTAA 59.968 61.111 0.00 0.00 36.30 2.85
2643 3023 3.717924 TTTGGGGCGTCCGTTTGGT 62.718 57.895 0.00 0.00 38.76 3.67
2644 3024 2.907917 TTTGGGGCGTCCGTTTGG 60.908 61.111 0.00 0.00 38.76 3.28
2655 3035 3.818121 TGTCCGCAGACGTTTGGGG 62.818 63.158 29.67 29.67 46.74 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.