Multiple sequence alignment - TraesCS1A01G232000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G232000 chr1A 100.000 6988 0 0 1 6988 405523612 405516625 0.000000e+00 12905.0
1 TraesCS1A01G232000 chr1A 91.696 1999 103 28 3125 5087 271887849 271889820 0.000000e+00 2713.0
2 TraesCS1A01G232000 chr1A 85.028 541 62 8 1 541 461264450 461264971 3.710000e-147 532.0
3 TraesCS1A01G232000 chr1A 86.096 187 20 6 6804 6987 376710768 376710951 5.530000e-46 196.0
4 TraesCS1A01G232000 chr1D 92.565 2569 121 26 575 3090 321926007 321923456 0.000000e+00 3622.0
5 TraesCS1A01G232000 chr1D 92.959 1747 89 8 5089 6817 321923443 321921713 0.000000e+00 2514.0
6 TraesCS1A01G232000 chr1D 89.716 282 28 1 1 281 72460887 72460606 6.660000e-95 359.0
7 TraesCS1A01G232000 chr1D 88.889 252 19 7 290 534 72459956 72459707 1.140000e-77 302.0
8 TraesCS1A01G232000 chr1D 86.842 190 19 6 6801 6987 4610792 4610978 2.550000e-49 207.0
9 TraesCS1A01G232000 chr1D 93.333 75 5 0 460 534 72443374 72443300 2.060000e-20 111.0
10 TraesCS1A01G232000 chr5A 94.586 1995 74 18 3125 5087 377127491 377129483 0.000000e+00 3055.0
11 TraesCS1A01G232000 chr6A 94.732 1993 51 14 3125 5088 200000548 200002515 0.000000e+00 3049.0
12 TraesCS1A01G232000 chr6A 93.750 2016 73 17 3125 5087 381107323 381109338 0.000000e+00 2976.0
13 TraesCS1A01G232000 chr6A 91.924 2006 89 15 3125 5087 262060249 262058274 0.000000e+00 2739.0
14 TraesCS1A01G232000 chr6A 86.842 190 19 6 6801 6987 169947997 169948183 2.550000e-49 207.0
15 TraesCS1A01G232000 chr2A 92.258 2002 104 25 3125 5087 204817821 204819810 0.000000e+00 2791.0
16 TraesCS1A01G232000 chr2A 91.794 2023 118 23 3113 5088 706216352 706214331 0.000000e+00 2772.0
17 TraesCS1A01G232000 chr2A 91.679 2007 93 22 3125 5087 672807137 672809113 0.000000e+00 2713.0
18 TraesCS1A01G232000 chr2A 91.738 1985 94 22 3125 5087 688638650 688640586 0.000000e+00 2693.0
19 TraesCS1A01G232000 chr2A 88.991 1199 72 10 3875 5043 551716653 551717821 0.000000e+00 1428.0
20 TraesCS1A01G232000 chr3A 92.097 2012 105 19 3125 5087 685428240 685430246 0.000000e+00 2785.0
21 TraesCS1A01G232000 chr3A 91.899 2012 110 21 3125 5087 685429985 685431992 0.000000e+00 2763.0
22 TraesCS1A01G232000 chr3A 87.335 1966 175 42 3142 5086 299551906 299553818 0.000000e+00 2183.0
23 TraesCS1A01G232000 chr3A 80.523 421 65 14 2028 2438 330449431 330449844 2.450000e-79 307.0
24 TraesCS1A01G232000 chr7A 92.258 2002 96 21 3125 5076 500570782 500568790 0.000000e+00 2784.0
25 TraesCS1A01G232000 chr7A 86.842 190 19 6 6801 6987 690528800 690528986 2.550000e-49 207.0
26 TraesCS1A01G232000 chr7A 86.316 190 20 6 6801 6987 690528223 690528409 1.190000e-47 202.0
27 TraesCS1A01G232000 chr7A 86.316 190 20 6 6801 6987 690572065 690571879 1.190000e-47 202.0
28 TraesCS1A01G232000 chr2B 91.633 2008 83 22 3125 5087 570093007 570091040 0.000000e+00 2699.0
29 TraesCS1A01G232000 chr2B 88.966 725 63 11 4352 5066 195686197 195685480 0.000000e+00 880.0
30 TraesCS1A01G232000 chr2B 79.812 213 24 6 4356 4550 247370305 247370094 3.400000e-28 137.0
31 TraesCS1A01G232000 chr1B 93.825 1409 58 10 5089 6479 434565001 434563604 0.000000e+00 2093.0
32 TraesCS1A01G232000 chr1B 91.548 1550 72 15 580 2103 434567500 434565984 0.000000e+00 2082.0
33 TraesCS1A01G232000 chr1B 90.609 1001 65 19 2137 3120 434565983 434564995 0.000000e+00 1301.0
34 TraesCS1A01G232000 chr1B 87.037 756 71 19 4331 5066 117184947 117184199 0.000000e+00 828.0
35 TraesCS1A01G232000 chr1B 85.782 633 61 17 4433 5038 421432053 421432683 1.640000e-180 643.0
36 TraesCS1A01G232000 chr1B 89.053 338 10 7 6466 6802 434562421 434562110 1.830000e-105 394.0
37 TraesCS1A01G232000 chr1B 86.316 190 20 6 6801 6987 491725821 491725635 1.190000e-47 202.0
38 TraesCS1A01G232000 chr4A 88.889 774 47 16 4352 5087 137543631 137542859 0.000000e+00 917.0
39 TraesCS1A01G232000 chr4A 85.607 535 56 8 1 533 531310910 531311425 6.170000e-150 542.0
40 TraesCS1A01G232000 chr4A 81.797 423 60 14 2028 2440 362726613 362726198 8.680000e-89 339.0
41 TraesCS1A01G232000 chrUn 89.339 666 54 12 4331 4984 92943552 92942892 0.000000e+00 821.0
42 TraesCS1A01G232000 chrUn 86.842 190 19 6 6801 6987 201317165 201317351 2.550000e-49 207.0
43 TraesCS1A01G232000 chrUn 80.328 122 24 0 1 122 74726354 74726233 7.460000e-15 93.5
44 TraesCS1A01G232000 chr7D 91.231 536 30 10 1 536 605089668 605090186 0.000000e+00 713.0
45 TraesCS1A01G232000 chr7D 86.842 190 19 6 6801 6987 101484524 101484710 2.550000e-49 207.0
46 TraesCS1A01G232000 chr4D 90.299 536 34 9 1 536 73405723 73405206 0.000000e+00 686.0
47 TraesCS1A01G232000 chr4D 81.469 599 71 17 4129 4701 451043902 451043318 8.260000e-124 455.0
48 TraesCS1A01G232000 chr3D 89.739 536 39 9 1 536 606146925 606147444 0.000000e+00 671.0
49 TraesCS1A01G232000 chr3D 80.142 423 66 15 2028 2440 95961144 95961558 4.100000e-77 300.0
50 TraesCS1A01G232000 chr6B 86.059 538 55 12 1 536 15779220 15779739 1.700000e-155 560.0
51 TraesCS1A01G232000 chr5B 85.000 540 58 14 1 536 396817487 396816967 1.730000e-145 527.0
52 TraesCS1A01G232000 chr5D 82.506 423 58 14 2028 2440 123560352 123560768 2.400000e-94 357.0
53 TraesCS1A01G232000 chr3B 81.597 288 38 10 2028 2306 546150602 546150321 2.540000e-54 224.0
54 TraesCS1A01G232000 chr3B 91.837 98 7 1 1813 1909 442082482 442082579 1.220000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G232000 chr1A 405516625 405523612 6987 True 12905.0 12905 100.00000 1 6988 1 chr1A.!!$R1 6987
1 TraesCS1A01G232000 chr1A 271887849 271889820 1971 False 2713.0 2713 91.69600 3125 5087 1 chr1A.!!$F1 1962
2 TraesCS1A01G232000 chr1A 461264450 461264971 521 False 532.0 532 85.02800 1 541 1 chr1A.!!$F3 540
3 TraesCS1A01G232000 chr1D 321921713 321926007 4294 True 3068.0 3622 92.76200 575 6817 2 chr1D.!!$R3 6242
4 TraesCS1A01G232000 chr1D 72459707 72460887 1180 True 330.5 359 89.30250 1 534 2 chr1D.!!$R2 533
5 TraesCS1A01G232000 chr5A 377127491 377129483 1992 False 3055.0 3055 94.58600 3125 5087 1 chr5A.!!$F1 1962
6 TraesCS1A01G232000 chr6A 200000548 200002515 1967 False 3049.0 3049 94.73200 3125 5088 1 chr6A.!!$F2 1963
7 TraesCS1A01G232000 chr6A 381107323 381109338 2015 False 2976.0 2976 93.75000 3125 5087 1 chr6A.!!$F3 1962
8 TraesCS1A01G232000 chr6A 262058274 262060249 1975 True 2739.0 2739 91.92400 3125 5087 1 chr6A.!!$R1 1962
9 TraesCS1A01G232000 chr2A 204817821 204819810 1989 False 2791.0 2791 92.25800 3125 5087 1 chr2A.!!$F1 1962
10 TraesCS1A01G232000 chr2A 706214331 706216352 2021 True 2772.0 2772 91.79400 3113 5088 1 chr2A.!!$R1 1975
11 TraesCS1A01G232000 chr2A 672807137 672809113 1976 False 2713.0 2713 91.67900 3125 5087 1 chr2A.!!$F3 1962
12 TraesCS1A01G232000 chr2A 688638650 688640586 1936 False 2693.0 2693 91.73800 3125 5087 1 chr2A.!!$F4 1962
13 TraesCS1A01G232000 chr2A 551716653 551717821 1168 False 1428.0 1428 88.99100 3875 5043 1 chr2A.!!$F2 1168
14 TraesCS1A01G232000 chr3A 685428240 685431992 3752 False 2774.0 2785 91.99800 3125 5087 2 chr3A.!!$F3 1962
15 TraesCS1A01G232000 chr3A 299551906 299553818 1912 False 2183.0 2183 87.33500 3142 5086 1 chr3A.!!$F1 1944
16 TraesCS1A01G232000 chr7A 500568790 500570782 1992 True 2784.0 2784 92.25800 3125 5076 1 chr7A.!!$R1 1951
17 TraesCS1A01G232000 chr7A 690528223 690528986 763 False 204.5 207 86.57900 6801 6987 2 chr7A.!!$F1 186
18 TraesCS1A01G232000 chr2B 570091040 570093007 1967 True 2699.0 2699 91.63300 3125 5087 1 chr2B.!!$R3 1962
19 TraesCS1A01G232000 chr2B 195685480 195686197 717 True 880.0 880 88.96600 4352 5066 1 chr2B.!!$R1 714
20 TraesCS1A01G232000 chr1B 434562110 434567500 5390 True 1467.5 2093 91.25875 580 6802 4 chr1B.!!$R3 6222
21 TraesCS1A01G232000 chr1B 117184199 117184947 748 True 828.0 828 87.03700 4331 5066 1 chr1B.!!$R1 735
22 TraesCS1A01G232000 chr1B 421432053 421432683 630 False 643.0 643 85.78200 4433 5038 1 chr1B.!!$F1 605
23 TraesCS1A01G232000 chr4A 137542859 137543631 772 True 917.0 917 88.88900 4352 5087 1 chr4A.!!$R1 735
24 TraesCS1A01G232000 chr4A 531310910 531311425 515 False 542.0 542 85.60700 1 533 1 chr4A.!!$F1 532
25 TraesCS1A01G232000 chrUn 92942892 92943552 660 True 821.0 821 89.33900 4331 4984 1 chrUn.!!$R2 653
26 TraesCS1A01G232000 chr7D 605089668 605090186 518 False 713.0 713 91.23100 1 536 1 chr7D.!!$F2 535
27 TraesCS1A01G232000 chr4D 73405206 73405723 517 True 686.0 686 90.29900 1 536 1 chr4D.!!$R1 535
28 TraesCS1A01G232000 chr4D 451043318 451043902 584 True 455.0 455 81.46900 4129 4701 1 chr4D.!!$R2 572
29 TraesCS1A01G232000 chr3D 606146925 606147444 519 False 671.0 671 89.73900 1 536 1 chr3D.!!$F2 535
30 TraesCS1A01G232000 chr6B 15779220 15779739 519 False 560.0 560 86.05900 1 536 1 chr6B.!!$F1 535
31 TraesCS1A01G232000 chr5B 396816967 396817487 520 True 527.0 527 85.00000 1 536 1 chr5B.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.026803 GAATCATCTTCGCGTGTGCC 59.973 55.000 5.77 0.00 38.08 5.01 F
400 401 0.028770 CACCATCTCTCTCGCTCGAC 59.971 60.000 0.00 0.00 0.00 4.20 F
424 425 0.101399 CCGTGGGATCTGACGAAGAG 59.899 60.000 15.73 0.00 38.67 2.85 F
507 508 0.179113 CCATTAATGGCGGTGGTTGC 60.179 55.000 21.32 0.00 41.75 4.17 F
726 732 0.249657 GAGCCTCGATCGCTGGAAAT 60.250 55.000 24.39 12.77 36.48 2.17 F
1261 1290 0.608640 CCTGTTAGCCTCTTCGTGGT 59.391 55.000 0.00 0.00 0.00 4.16 F
2949 3005 0.238289 GTGTGTGTCCTCAATTGCGG 59.762 55.000 8.23 8.23 0.00 5.69 F
3200 3258 2.677228 CCGGGCAAGATGGAAGGT 59.323 61.111 0.00 0.00 0.00 3.50 F
4505 7292 2.750637 GATGGCAGCTGCAGCAGT 60.751 61.111 38.24 18.36 45.16 4.40 F
5426 8416 0.038744 CTGACAATTCACCTGGCCCT 59.961 55.000 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1508 0.036010 CACCCGAGCAGGAATGTTCT 60.036 55.000 0.00 0.00 45.00 3.01 R
1952 1984 0.471617 CATGGCCAGTAAGAGGGAGG 59.528 60.000 13.05 0.00 0.00 4.30 R
2275 2307 5.809562 TGGTTTGTATCTGCACAAAAACAAG 59.190 36.000 3.19 0.00 46.81 3.16 R
2468 2501 4.713553 TGTGCTAAATTTCTGAGACACCA 58.286 39.130 0.00 0.00 0.00 4.17 R
2535 2584 0.392729 ATCAGCCAAGAGAGCACTGC 60.393 55.000 0.00 0.00 0.00 4.40 R
3119 3175 0.537188 AGCAGCGCCATAACACTAGT 59.463 50.000 2.29 0.00 0.00 2.57 R
4200 5027 2.755876 ATCGCAGGTCAGCTCCGA 60.756 61.111 0.00 0.00 0.00 4.55 R
5076 8050 5.221087 GCGCTCTTTCTACCTGTTAGAGTAT 60.221 44.000 0.00 0.00 38.12 2.12 R
5745 8735 0.460284 CTAGTCGAAGGTGCGCCAAT 60.460 55.000 20.59 6.71 37.19 3.16 R
6964 11735 0.467290 ATGCGTTGGTGGTCCAGTTT 60.467 50.000 0.00 0.00 45.22 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 0.806492 GAATCCGTTGACTCCGCCTC 60.806 60.000 0.00 0.00 0.00 4.70
75 76 2.240162 AATCCGTTGACTCCGCCTCC 62.240 60.000 0.00 0.00 0.00 4.30
76 77 3.382832 CCGTTGACTCCGCCTCCT 61.383 66.667 0.00 0.00 0.00 3.69
77 78 2.125912 CGTTGACTCCGCCTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
78 79 2.636412 CGTTGACTCCGCCTCCTGA 61.636 63.158 0.00 0.00 0.00 3.86
79 80 1.671742 GTTGACTCCGCCTCCTGAA 59.328 57.895 0.00 0.00 0.00 3.02
80 81 0.250513 GTTGACTCCGCCTCCTGAAT 59.749 55.000 0.00 0.00 0.00 2.57
81 82 0.250234 TTGACTCCGCCTCCTGAATG 59.750 55.000 0.00 0.00 0.00 2.67
82 83 1.144936 GACTCCGCCTCCTGAATGG 59.855 63.158 0.00 0.00 37.10 3.16
83 84 2.203126 CTCCGCCTCCTGAATGGC 60.203 66.667 0.00 0.00 45.25 4.40
84 85 3.764160 CTCCGCCTCCTGAATGGCC 62.764 68.421 0.00 0.00 45.90 5.36
85 86 4.883354 CCGCCTCCTGAATGGCCC 62.883 72.222 0.00 0.00 45.90 5.80
86 87 4.113815 CGCCTCCTGAATGGCCCA 62.114 66.667 0.00 0.00 45.90 5.36
87 88 2.123982 GCCTCCTGAATGGCCCAG 60.124 66.667 0.00 0.00 43.11 4.45
88 89 2.683465 GCCTCCTGAATGGCCCAGA 61.683 63.158 8.90 0.00 43.11 3.86
89 90 2.001803 CCTCCTGAATGGCCCAGAA 58.998 57.895 8.90 0.00 33.65 3.02
90 91 0.106819 CCTCCTGAATGGCCCAGAAG 60.107 60.000 8.90 0.00 33.65 2.85
91 92 0.914644 CTCCTGAATGGCCCAGAAGA 59.085 55.000 8.90 0.00 33.65 2.87
92 93 1.493871 CTCCTGAATGGCCCAGAAGAT 59.506 52.381 8.90 0.00 33.65 2.40
93 94 1.213678 TCCTGAATGGCCCAGAAGATG 59.786 52.381 8.90 0.00 33.65 2.90
94 95 1.213678 CCTGAATGGCCCAGAAGATGA 59.786 52.381 8.90 0.00 33.65 2.92
95 96 2.573369 CTGAATGGCCCAGAAGATGAG 58.427 52.381 0.00 0.00 33.65 2.90
96 97 1.316651 GAATGGCCCAGAAGATGAGC 58.683 55.000 0.00 0.00 0.00 4.26
97 98 0.924823 AATGGCCCAGAAGATGAGCT 59.075 50.000 0.00 0.00 0.00 4.09
98 99 0.473326 ATGGCCCAGAAGATGAGCTC 59.527 55.000 6.82 6.82 0.00 4.09
99 100 1.227497 GGCCCAGAAGATGAGCTCG 60.227 63.158 9.64 0.00 0.00 5.03
100 101 1.519719 GCCCAGAAGATGAGCTCGT 59.480 57.895 8.55 8.55 0.00 4.18
101 102 0.747255 GCCCAGAAGATGAGCTCGTA 59.253 55.000 8.83 0.00 0.00 3.43
102 103 1.137086 GCCCAGAAGATGAGCTCGTAA 59.863 52.381 8.83 0.00 0.00 3.18
103 104 2.224161 GCCCAGAAGATGAGCTCGTAAT 60.224 50.000 8.83 0.00 0.00 1.89
104 105 3.648009 CCCAGAAGATGAGCTCGTAATC 58.352 50.000 8.83 10.13 0.00 1.75
105 106 3.553922 CCCAGAAGATGAGCTCGTAATCC 60.554 52.174 8.83 0.00 0.00 3.01
106 107 3.068732 CCAGAAGATGAGCTCGTAATCCA 59.931 47.826 8.83 0.00 0.00 3.41
107 108 4.262377 CCAGAAGATGAGCTCGTAATCCAT 60.262 45.833 8.83 0.00 0.00 3.41
108 109 4.922692 CAGAAGATGAGCTCGTAATCCATC 59.077 45.833 8.83 4.80 35.21 3.51
109 110 3.951775 AGATGAGCTCGTAATCCATCC 57.048 47.619 8.83 0.00 35.48 3.51
110 111 2.564947 AGATGAGCTCGTAATCCATCCC 59.435 50.000 8.83 0.00 35.48 3.85
111 112 1.048601 TGAGCTCGTAATCCATCCCC 58.951 55.000 9.64 0.00 0.00 4.81
112 113 0.321996 GAGCTCGTAATCCATCCCCC 59.678 60.000 0.00 0.00 0.00 5.40
143 144 3.774702 GAACCGCACGCGTTCCTC 61.775 66.667 10.22 0.00 37.81 3.71
149 150 2.126071 CACGCGTTCCTCGGACAT 60.126 61.111 10.22 0.00 40.26 3.06
150 151 2.158959 CACGCGTTCCTCGGACATC 61.159 63.158 10.22 0.00 40.26 3.06
151 152 2.949678 CGCGTTCCTCGGACATCG 60.950 66.667 0.00 0.00 40.26 3.84
152 153 3.255379 GCGTTCCTCGGACATCGC 61.255 66.667 11.43 11.43 40.26 4.58
153 154 2.949678 CGTTCCTCGGACATCGCG 60.950 66.667 0.00 0.00 39.05 5.87
154 155 2.181021 GTTCCTCGGACATCGCGT 59.819 61.111 5.77 0.00 39.05 6.01
155 156 2.158959 GTTCCTCGGACATCGCGTG 61.159 63.158 5.77 6.57 39.05 5.34
156 157 3.982372 TTCCTCGGACATCGCGTGC 62.982 63.158 5.77 0.00 39.05 5.34
157 158 4.498520 CCTCGGACATCGCGTGCT 62.499 66.667 5.77 0.00 39.05 4.40
158 159 3.250323 CTCGGACATCGCGTGCTG 61.250 66.667 5.77 5.23 39.05 4.41
159 160 4.794439 TCGGACATCGCGTGCTGG 62.794 66.667 5.77 0.00 39.05 4.85
160 161 4.794439 CGGACATCGCGTGCTGGA 62.794 66.667 5.77 0.00 32.85 3.86
161 162 2.202932 GGACATCGCGTGCTGGAT 60.203 61.111 5.77 0.00 32.16 3.41
162 163 2.528743 GGACATCGCGTGCTGGATG 61.529 63.158 5.77 3.54 44.34 3.51
163 164 1.519234 GACATCGCGTGCTGGATGA 60.519 57.895 5.77 0.00 42.00 2.92
164 165 1.756375 GACATCGCGTGCTGGATGAC 61.756 60.000 5.77 0.00 42.00 3.06
165 166 2.202932 ATCGCGTGCTGGATGACC 60.203 61.111 5.77 0.00 0.00 4.02
166 167 2.725312 ATCGCGTGCTGGATGACCT 61.725 57.895 5.77 0.00 37.04 3.85
167 168 2.635229 ATCGCGTGCTGGATGACCTC 62.635 60.000 5.77 0.00 37.04 3.85
168 169 2.887568 GCGTGCTGGATGACCTCG 60.888 66.667 0.00 0.00 37.04 4.63
169 170 2.885113 CGTGCTGGATGACCTCGA 59.115 61.111 0.00 0.00 37.04 4.04
170 171 1.439228 CGTGCTGGATGACCTCGAT 59.561 57.895 0.00 0.00 37.04 3.59
171 172 0.873312 CGTGCTGGATGACCTCGATG 60.873 60.000 0.00 0.00 37.04 3.84
172 173 0.461548 GTGCTGGATGACCTCGATGA 59.538 55.000 0.00 0.00 37.04 2.92
173 174 0.749049 TGCTGGATGACCTCGATGAG 59.251 55.000 0.00 0.00 37.04 2.90
181 182 4.528674 CCTCGATGAGGGTTGCTG 57.471 61.111 4.89 0.00 45.43 4.41
182 183 1.153289 CCTCGATGAGGGTTGCTGG 60.153 63.158 4.89 0.00 45.43 4.85
183 184 1.817099 CTCGATGAGGGTTGCTGGC 60.817 63.158 0.00 0.00 0.00 4.85
184 185 2.825836 CGATGAGGGTTGCTGGCC 60.826 66.667 0.00 0.00 0.00 5.36
185 186 2.356278 GATGAGGGTTGCTGGCCA 59.644 61.111 4.71 4.71 0.00 5.36
186 187 1.751927 GATGAGGGTTGCTGGCCAG 60.752 63.158 29.34 29.34 0.00 4.85
187 188 2.202236 GATGAGGGTTGCTGGCCAGA 62.202 60.000 37.21 18.42 0.00 3.86
188 189 2.360475 GAGGGTTGCTGGCCAGAC 60.360 66.667 37.21 25.15 0.00 3.51
189 190 4.335647 AGGGTTGCTGGCCAGACG 62.336 66.667 37.21 12.08 0.00 4.18
190 191 4.643387 GGGTTGCTGGCCAGACGT 62.643 66.667 37.21 0.00 0.00 4.34
191 192 3.050275 GGTTGCTGGCCAGACGTC 61.050 66.667 37.21 18.80 0.00 4.34
192 193 3.414700 GTTGCTGGCCAGACGTCG 61.415 66.667 37.21 10.35 0.00 5.12
196 197 4.363990 CTGGCCAGACGTCGCAGT 62.364 66.667 29.88 0.00 0.00 4.40
197 198 3.865929 CTGGCCAGACGTCGCAGTT 62.866 63.158 29.88 0.00 0.00 3.16
198 199 3.112709 GGCCAGACGTCGCAGTTC 61.113 66.667 15.80 2.15 0.00 3.01
199 200 3.470567 GCCAGACGTCGCAGTTCG 61.471 66.667 10.46 0.00 40.15 3.95
200 201 2.805353 CCAGACGTCGCAGTTCGG 60.805 66.667 10.46 0.00 39.05 4.30
201 202 2.805353 CAGACGTCGCAGTTCGGG 60.805 66.667 10.46 0.00 39.05 5.14
202 203 2.981909 AGACGTCGCAGTTCGGGA 60.982 61.111 10.46 0.00 39.05 5.14
203 204 2.049802 GACGTCGCAGTTCGGGAA 60.050 61.111 0.00 0.00 38.48 3.97
204 205 1.445582 GACGTCGCAGTTCGGGAAT 60.446 57.895 0.00 0.00 38.48 3.01
205 206 1.411493 GACGTCGCAGTTCGGGAATC 61.411 60.000 0.00 0.00 38.48 2.52
206 207 2.505498 CGTCGCAGTTCGGGAATCG 61.505 63.158 0.00 0.00 38.48 3.34
207 208 2.508439 TCGCAGTTCGGGAATCGC 60.508 61.111 0.00 0.00 39.05 4.58
208 209 2.509336 CGCAGTTCGGGAATCGCT 60.509 61.111 0.00 0.00 39.05 4.93
209 210 2.517450 CGCAGTTCGGGAATCGCTC 61.517 63.158 0.00 0.00 39.05 5.03
210 211 2.174319 GCAGTTCGGGAATCGCTCC 61.174 63.158 0.00 0.00 44.54 4.70
217 218 3.309582 GGAATCGCTCCCTCACCA 58.690 61.111 0.00 0.00 38.44 4.17
218 219 1.153349 GGAATCGCTCCCTCACCAC 60.153 63.158 0.00 0.00 38.44 4.16
219 220 1.519455 GAATCGCTCCCTCACCACG 60.519 63.158 0.00 0.00 0.00 4.94
220 221 3.665675 AATCGCTCCCTCACCACGC 62.666 63.158 0.00 0.00 0.00 5.34
223 224 4.373116 GCTCCCTCACCACGCGAA 62.373 66.667 15.93 0.00 0.00 4.70
224 225 2.579201 CTCCCTCACCACGCGAAT 59.421 61.111 15.93 0.00 0.00 3.34
225 226 1.519455 CTCCCTCACCACGCGAATC 60.519 63.158 15.93 0.00 0.00 2.52
226 227 2.225791 CTCCCTCACCACGCGAATCA 62.226 60.000 15.93 0.00 0.00 2.57
227 228 1.153369 CCCTCACCACGCGAATCAT 60.153 57.895 15.93 0.00 0.00 2.45
228 229 1.154205 CCCTCACCACGCGAATCATC 61.154 60.000 15.93 0.00 0.00 2.92
229 230 0.179100 CCTCACCACGCGAATCATCT 60.179 55.000 15.93 0.00 0.00 2.90
230 231 1.645034 CTCACCACGCGAATCATCTT 58.355 50.000 15.93 0.00 0.00 2.40
231 232 1.590238 CTCACCACGCGAATCATCTTC 59.410 52.381 15.93 0.00 0.00 2.87
232 233 0.298707 CACCACGCGAATCATCTTCG 59.701 55.000 15.93 3.15 44.06 3.79
238 239 3.767900 CGAATCATCTTCGCGTGTG 57.232 52.632 5.77 1.04 35.05 3.82
239 240 0.314578 CGAATCATCTTCGCGTGTGC 60.315 55.000 5.77 0.00 35.05 4.57
240 241 0.026803 GAATCATCTTCGCGTGTGCC 59.973 55.000 5.77 0.00 38.08 5.01
241 242 0.391661 AATCATCTTCGCGTGTGCCT 60.392 50.000 5.77 0.00 38.08 4.75
242 243 0.807667 ATCATCTTCGCGTGTGCCTC 60.808 55.000 5.77 0.00 38.08 4.70
243 244 1.446792 CATCTTCGCGTGTGCCTCT 60.447 57.895 5.77 0.00 38.08 3.69
244 245 1.446792 ATCTTCGCGTGTGCCTCTG 60.447 57.895 5.77 0.00 38.08 3.35
245 246 2.842394 ATCTTCGCGTGTGCCTCTGG 62.842 60.000 5.77 0.00 38.08 3.86
275 276 4.980805 GGTCACCGGCAACTGCGA 62.981 66.667 0.00 0.00 43.26 5.10
276 277 3.712881 GTCACCGGCAACTGCGAC 61.713 66.667 0.00 0.00 43.26 5.19
277 278 4.228567 TCACCGGCAACTGCGACA 62.229 61.111 0.00 0.00 43.26 4.35
278 279 4.012895 CACCGGCAACTGCGACAC 62.013 66.667 0.00 0.00 43.26 3.67
284 285 3.276091 CAACTGCGACACCGGCAA 61.276 61.111 0.00 0.00 40.39 4.52
285 286 3.276846 AACTGCGACACCGGCAAC 61.277 61.111 0.00 0.00 40.39 4.17
286 287 3.750373 AACTGCGACACCGGCAACT 62.750 57.895 0.00 0.00 40.39 3.16
287 288 3.716006 CTGCGACACCGGCAACTG 61.716 66.667 0.00 0.00 40.39 3.16
291 292 3.712881 GACACCGGCAACTGCGAC 61.713 66.667 0.00 0.00 43.26 5.19
292 293 4.539083 ACACCGGCAACTGCGACA 62.539 61.111 0.00 0.00 43.26 4.35
293 294 4.012895 CACCGGCAACTGCGACAC 62.013 66.667 0.00 0.00 43.26 3.67
299 300 4.012895 CAACTGCGACACCGGCAC 62.013 66.667 0.00 0.00 36.24 5.01
342 343 2.362889 GCCACCTGGTGATTGGGG 60.363 66.667 27.94 11.24 35.23 4.96
343 344 2.362889 CCACCTGGTGATTGGGGC 60.363 66.667 27.94 0.00 35.23 5.80
344 345 2.751436 CACCTGGTGATTGGGGCG 60.751 66.667 22.33 0.00 35.23 6.13
345 346 4.740822 ACCTGGTGATTGGGGCGC 62.741 66.667 0.00 0.00 0.00 6.53
346 347 4.738998 CCTGGTGATTGGGGCGCA 62.739 66.667 10.83 0.00 0.00 6.09
347 348 3.443045 CTGGTGATTGGGGCGCAC 61.443 66.667 10.83 4.83 0.00 5.34
368 369 3.966543 CCACGCCCTTGTTCCCCT 61.967 66.667 0.00 0.00 0.00 4.79
369 370 2.359975 CACGCCCTTGTTCCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
370 371 3.647771 ACGCCCTTGTTCCCCTCC 61.648 66.667 0.00 0.00 0.00 4.30
371 372 4.778143 CGCCCTTGTTCCCCTCCG 62.778 72.222 0.00 0.00 0.00 4.63
373 374 4.778143 CCCTTGTTCCCCTCCGCG 62.778 72.222 0.00 0.00 0.00 6.46
374 375 3.702048 CCTTGTTCCCCTCCGCGA 61.702 66.667 8.23 0.00 0.00 5.87
375 376 2.125512 CTTGTTCCCCTCCGCGAG 60.126 66.667 8.23 2.69 0.00 5.03
376 377 4.388499 TTGTTCCCCTCCGCGAGC 62.388 66.667 8.23 0.00 0.00 5.03
394 395 3.543537 CCCCCACCATCTCTCTCG 58.456 66.667 0.00 0.00 0.00 4.04
395 396 2.801631 CCCCCACCATCTCTCTCGC 61.802 68.421 0.00 0.00 0.00 5.03
396 397 1.760086 CCCCACCATCTCTCTCGCT 60.760 63.158 0.00 0.00 0.00 4.93
397 398 1.739049 CCCACCATCTCTCTCGCTC 59.261 63.158 0.00 0.00 0.00 5.03
398 399 1.358402 CCACCATCTCTCTCGCTCG 59.642 63.158 0.00 0.00 0.00 5.03
399 400 1.098129 CCACCATCTCTCTCGCTCGA 61.098 60.000 0.00 0.00 0.00 4.04
400 401 0.028770 CACCATCTCTCTCGCTCGAC 59.971 60.000 0.00 0.00 0.00 4.20
401 402 0.107410 ACCATCTCTCTCGCTCGACT 60.107 55.000 0.00 0.00 0.00 4.18
402 403 0.307453 CCATCTCTCTCGCTCGACTG 59.693 60.000 0.00 0.00 0.00 3.51
403 404 0.307453 CATCTCTCTCGCTCGACTGG 59.693 60.000 0.00 0.00 0.00 4.00
404 405 0.817634 ATCTCTCTCGCTCGACTGGG 60.818 60.000 0.00 0.00 0.00 4.45
405 406 3.119709 CTCTCTCGCTCGACTGGGC 62.120 68.421 0.00 0.00 0.00 5.36
406 407 4.200283 CTCTCGCTCGACTGGGCC 62.200 72.222 0.00 0.00 0.00 5.80
414 415 4.530857 CGACTGGGCCGTGGGATC 62.531 72.222 5.76 0.00 0.00 3.36
415 416 3.083997 GACTGGGCCGTGGGATCT 61.084 66.667 5.76 0.00 0.00 2.75
416 417 3.391665 GACTGGGCCGTGGGATCTG 62.392 68.421 5.76 0.00 0.00 2.90
417 418 3.083349 CTGGGCCGTGGGATCTGA 61.083 66.667 0.00 0.00 0.00 3.27
418 419 3.391665 CTGGGCCGTGGGATCTGAC 62.392 68.421 0.00 0.00 0.00 3.51
419 420 4.530857 GGGCCGTGGGATCTGACG 62.531 72.222 0.00 9.31 35.31 4.35
420 421 3.458163 GGCCGTGGGATCTGACGA 61.458 66.667 15.73 0.00 37.81 4.20
421 422 2.577059 GCCGTGGGATCTGACGAA 59.423 61.111 15.73 0.00 37.81 3.85
422 423 1.519455 GCCGTGGGATCTGACGAAG 60.519 63.158 15.73 4.52 37.81 3.79
423 424 1.945354 GCCGTGGGATCTGACGAAGA 61.945 60.000 15.73 0.00 37.81 2.87
424 425 0.101399 CCGTGGGATCTGACGAAGAG 59.899 60.000 15.73 0.00 38.67 2.85
425 426 0.526524 CGTGGGATCTGACGAAGAGC 60.527 60.000 10.41 0.00 40.80 4.09
426 427 0.532573 GTGGGATCTGACGAAGAGCA 59.467 55.000 9.62 0.00 43.47 4.26
427 428 1.066858 GTGGGATCTGACGAAGAGCAA 60.067 52.381 9.62 0.00 43.47 3.91
428 429 1.066858 TGGGATCTGACGAAGAGCAAC 60.067 52.381 9.62 3.81 43.47 4.17
429 430 1.646189 GGATCTGACGAAGAGCAACC 58.354 55.000 9.62 2.99 43.47 3.77
430 431 1.272781 GATCTGACGAAGAGCAACCG 58.727 55.000 0.00 0.00 41.20 4.44
431 432 0.737715 ATCTGACGAAGAGCAACCGC 60.738 55.000 0.00 0.00 38.67 5.68
432 433 2.357034 TGACGAAGAGCAACCGCC 60.357 61.111 0.00 0.00 39.83 6.13
433 434 2.357034 GACGAAGAGCAACCGCCA 60.357 61.111 0.00 0.00 39.83 5.69
434 435 2.357517 ACGAAGAGCAACCGCCAG 60.358 61.111 0.00 0.00 39.83 4.85
435 436 3.121030 CGAAGAGCAACCGCCAGG 61.121 66.667 0.00 0.00 45.13 4.45
436 437 2.747855 GAAGAGCAACCGCCAGGG 60.748 66.667 0.00 0.00 43.47 4.45
437 438 4.351054 AAGAGCAACCGCCAGGGG 62.351 66.667 0.00 0.00 43.47 4.79
439 440 4.785453 GAGCAACCGCCAGGGGAG 62.785 72.222 4.70 0.00 43.47 4.30
448 449 4.499116 CCAGGGGAGGGGGACGAT 62.499 72.222 0.00 0.00 0.00 3.73
449 450 3.164269 CAGGGGAGGGGGACGATG 61.164 72.222 0.00 0.00 0.00 3.84
450 451 4.499116 AGGGGAGGGGGACGATGG 62.499 72.222 0.00 0.00 0.00 3.51
458 459 3.917760 GGGACGATGGGGCGAGAG 61.918 72.222 0.00 0.00 34.83 3.20
459 460 3.917760 GGACGATGGGGCGAGAGG 61.918 72.222 0.00 0.00 34.83 3.69
460 461 3.917760 GACGATGGGGCGAGAGGG 61.918 72.222 0.00 0.00 34.83 4.30
463 464 4.880426 GATGGGGCGAGAGGGGGA 62.880 72.222 0.00 0.00 0.00 4.81
464 465 4.888325 ATGGGGCGAGAGGGGGAG 62.888 72.222 0.00 0.00 0.00 4.30
471 472 3.773154 GAGAGGGGGAGGGAGGCT 61.773 72.222 0.00 0.00 0.00 4.58
472 473 2.288847 AGAGGGGGAGGGAGGCTA 60.289 66.667 0.00 0.00 0.00 3.93
473 474 2.202899 GAGGGGGAGGGAGGCTAG 59.797 72.222 0.00 0.00 0.00 3.42
474 475 2.288847 AGGGGGAGGGAGGCTAGA 60.289 66.667 0.00 0.00 0.00 2.43
475 476 1.710709 AGGGGGAGGGAGGCTAGAT 60.711 63.158 0.00 0.00 0.00 1.98
476 477 0.406612 AGGGGGAGGGAGGCTAGATA 60.407 60.000 0.00 0.00 0.00 1.98
477 478 0.492276 GGGGGAGGGAGGCTAGATAA 59.508 60.000 0.00 0.00 0.00 1.75
478 479 1.553651 GGGGGAGGGAGGCTAGATAAG 60.554 61.905 0.00 0.00 0.00 1.73
486 487 3.106407 GCTAGATAAGCCCGCGCG 61.106 66.667 25.67 25.67 46.25 6.86
487 488 2.430921 CTAGATAAGCCCGCGCGG 60.431 66.667 41.00 41.00 41.18 6.46
496 497 4.326766 CCCGCGCGGCCATTAATG 62.327 66.667 42.39 22.74 0.00 1.90
507 508 0.179113 CCATTAATGGCGGTGGTTGC 60.179 55.000 21.32 0.00 41.75 4.17
508 509 0.525242 CATTAATGGCGGTGGTTGCG 60.525 55.000 7.62 0.00 0.00 4.85
509 510 1.662438 ATTAATGGCGGTGGTTGCGG 61.662 55.000 0.00 0.00 0.00 5.69
517 518 3.436055 GTGGTTGCGGCGCCATTA 61.436 61.111 30.82 7.64 37.09 1.90
518 519 3.436055 TGGTTGCGGCGCCATTAC 61.436 61.111 30.82 19.34 0.00 1.89
519 520 3.131478 GGTTGCGGCGCCATTACT 61.131 61.111 30.82 0.00 0.00 2.24
520 521 2.403586 GTTGCGGCGCCATTACTC 59.596 61.111 30.82 7.42 0.00 2.59
521 522 3.192230 TTGCGGCGCCATTACTCG 61.192 61.111 30.82 11.70 0.00 4.18
522 523 3.943479 TTGCGGCGCCATTACTCGT 62.943 57.895 30.82 0.00 0.00 4.18
523 524 3.925238 GCGGCGCCATTACTCGTG 61.925 66.667 28.98 7.61 0.00 4.35
524 525 3.261951 CGGCGCCATTACTCGTGG 61.262 66.667 28.98 0.98 39.80 4.94
525 526 2.125269 GGCGCCATTACTCGTGGT 60.125 61.111 24.80 0.00 39.01 4.16
526 527 1.142314 GGCGCCATTACTCGTGGTA 59.858 57.895 24.80 0.00 39.01 3.25
527 528 0.874607 GGCGCCATTACTCGTGGTAG 60.875 60.000 24.80 0.00 39.01 3.18
528 529 0.874607 GCGCCATTACTCGTGGTAGG 60.875 60.000 0.00 0.00 39.01 3.18
529 530 0.458669 CGCCATTACTCGTGGTAGGT 59.541 55.000 0.00 0.00 39.01 3.08
530 531 1.801395 CGCCATTACTCGTGGTAGGTG 60.801 57.143 0.00 0.00 39.01 4.00
531 532 1.479323 GCCATTACTCGTGGTAGGTGA 59.521 52.381 0.00 0.00 39.01 4.02
532 533 2.481449 GCCATTACTCGTGGTAGGTGAG 60.481 54.545 0.00 0.00 39.01 3.51
533 534 2.100916 CCATTACTCGTGGTAGGTGAGG 59.899 54.545 0.00 0.00 34.03 3.86
534 535 1.180029 TTACTCGTGGTAGGTGAGGC 58.820 55.000 0.00 0.00 34.03 4.70
535 536 1.028330 TACTCGTGGTAGGTGAGGCG 61.028 60.000 0.00 0.00 34.03 5.52
536 537 3.064987 CTCGTGGTAGGTGAGGCGG 62.065 68.421 0.00 0.00 0.00 6.13
537 538 4.143333 CGTGGTAGGTGAGGCGGG 62.143 72.222 0.00 0.00 0.00 6.13
538 539 3.001406 GTGGTAGGTGAGGCGGGT 61.001 66.667 0.00 0.00 0.00 5.28
539 540 3.000819 TGGTAGGTGAGGCGGGTG 61.001 66.667 0.00 0.00 0.00 4.61
540 541 3.782443 GGTAGGTGAGGCGGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
541 542 3.001406 GTAGGTGAGGCGGGTGGT 61.001 66.667 0.00 0.00 0.00 4.16
542 543 1.683365 GTAGGTGAGGCGGGTGGTA 60.683 63.158 0.00 0.00 0.00 3.25
543 544 1.380785 TAGGTGAGGCGGGTGGTAG 60.381 63.158 0.00 0.00 0.00 3.18
544 545 2.866523 TAGGTGAGGCGGGTGGTAGG 62.867 65.000 0.00 0.00 0.00 3.18
545 546 4.468689 GTGAGGCGGGTGGTAGGC 62.469 72.222 0.00 0.00 0.00 3.93
551 552 4.910585 CGGGTGGTAGGCGCCATC 62.911 72.222 31.54 20.39 41.08 3.51
552 553 3.792736 GGGTGGTAGGCGCCATCA 61.793 66.667 31.54 20.22 41.33 3.07
553 554 2.513897 GGTGGTAGGCGCCATCAC 60.514 66.667 31.54 29.01 41.08 3.06
554 555 2.890474 GTGGTAGGCGCCATCACG 60.890 66.667 31.54 0.00 41.08 4.35
555 556 4.155733 TGGTAGGCGCCATCACGG 62.156 66.667 31.54 0.00 32.81 4.94
564 565 3.168271 CCATCACGGCAAGTCACG 58.832 61.111 0.00 0.00 0.00 4.35
565 566 2.390599 CCATCACGGCAAGTCACGG 61.391 63.158 0.00 0.00 0.00 4.94
566 567 1.667830 CATCACGGCAAGTCACGGT 60.668 57.895 0.00 0.00 0.00 4.83
567 568 1.374252 ATCACGGCAAGTCACGGTC 60.374 57.895 0.00 0.00 0.00 4.79
568 569 1.816863 ATCACGGCAAGTCACGGTCT 61.817 55.000 0.00 0.00 0.00 3.85
569 570 1.594293 CACGGCAAGTCACGGTCTT 60.594 57.895 0.00 0.00 0.00 3.01
570 571 1.300697 ACGGCAAGTCACGGTCTTC 60.301 57.895 0.00 0.00 0.00 2.87
571 572 1.006102 CGGCAAGTCACGGTCTTCT 60.006 57.895 0.00 0.00 0.00 2.85
572 573 0.600255 CGGCAAGTCACGGTCTTCTT 60.600 55.000 0.00 0.00 0.00 2.52
573 574 1.149148 GGCAAGTCACGGTCTTCTTC 58.851 55.000 0.00 0.00 0.00 2.87
578 579 0.524862 GTCACGGTCTTCTTCGGCTA 59.475 55.000 0.00 0.00 0.00 3.93
710 716 0.755698 TCCCCCTACATCACTCGAGC 60.756 60.000 13.61 0.00 0.00 5.03
726 732 0.249657 GAGCCTCGATCGCTGGAAAT 60.250 55.000 24.39 12.77 36.48 2.17
743 749 1.253100 AATGGTTGATTCGGCCGTTT 58.747 45.000 27.15 14.10 0.00 3.60
744 750 1.253100 ATGGTTGATTCGGCCGTTTT 58.747 45.000 27.15 11.21 0.00 2.43
747 753 2.621998 TGGTTGATTCGGCCGTTTTTAA 59.378 40.909 27.15 12.35 0.00 1.52
785 791 4.782019 TTGCTTTAAGTTTCATGCGGAT 57.218 36.364 0.00 0.00 0.00 4.18
791 797 6.145371 GCTTTAAGTTTCATGCGGATCAAAAA 59.855 34.615 0.00 0.00 0.00 1.94
796 802 4.374843 TTCATGCGGATCAAAAATCTGG 57.625 40.909 0.00 0.00 0.00 3.86
816 822 5.241403 TGGTACAGATCAGACAACCAAAT 57.759 39.130 8.49 0.00 34.20 2.32
820 826 7.552687 TGGTACAGATCAGACAACCAAATAATC 59.447 37.037 8.49 0.00 34.20 1.75
821 827 7.770897 GGTACAGATCAGACAACCAAATAATCT 59.229 37.037 0.00 0.00 0.00 2.40
873 879 4.059459 CGAGCAACCACACGCGTC 62.059 66.667 9.86 0.00 0.00 5.19
874 880 2.964925 GAGCAACCACACGCGTCA 60.965 61.111 9.86 0.00 0.00 4.35
875 881 2.280797 AGCAACCACACGCGTCAT 60.281 55.556 9.86 0.00 0.00 3.06
897 926 4.704103 TCCTGGACCAGCGAGGCT 62.704 66.667 16.72 0.00 41.87 4.58
1005 1034 3.866582 GCTCCCCGTCCCATGGAG 61.867 72.222 15.22 3.25 46.87 3.86
1006 1035 3.866582 CTCCCCGTCCCATGGAGC 61.867 72.222 15.22 4.23 39.29 4.70
1209 1238 2.183555 CTCTGGGACCGCGGTAAC 59.816 66.667 34.36 26.58 0.00 2.50
1210 1239 2.283388 TCTGGGACCGCGGTAACT 60.283 61.111 34.36 8.70 0.00 2.24
1211 1240 2.125673 CTGGGACCGCGGTAACTG 60.126 66.667 34.36 24.96 0.00 3.16
1212 1241 2.918802 TGGGACCGCGGTAACTGT 60.919 61.111 34.36 7.22 0.00 3.55
1213 1242 2.125793 GGGACCGCGGTAACTGTC 60.126 66.667 34.36 17.91 0.00 3.51
1214 1243 2.505557 GGACCGCGGTAACTGTCG 60.506 66.667 34.36 0.09 0.00 4.35
1220 1249 2.340809 CGGTAACTGTCGCCACCA 59.659 61.111 0.00 0.00 0.00 4.17
1261 1290 0.608640 CCTGTTAGCCTCTTCGTGGT 59.391 55.000 0.00 0.00 0.00 4.16
1456 1485 3.681835 GTCTGTCGGCCTGTCGGT 61.682 66.667 0.00 0.00 0.00 4.69
1479 1508 1.074775 GGGACAGGGATGTGCACAA 59.925 57.895 25.72 7.59 31.46 3.33
1622 1653 3.695606 GCCTGACTGGTCGCTCCA 61.696 66.667 0.00 0.00 45.01 3.86
1634 1665 2.110352 CGCTCCATGCATGCTCACA 61.110 57.895 21.69 0.00 43.06 3.58
1850 1882 2.935201 CAGCAAGAACCATCTAGCACTC 59.065 50.000 0.00 0.00 33.77 3.51
1910 1942 7.158021 TGGATGTGTTGGTAAATCCATTTTTC 58.842 34.615 0.00 0.00 46.60 2.29
1912 1944 7.331687 GGATGTGTTGGTAAATCCATTTTTCTG 59.668 37.037 0.00 0.00 46.60 3.02
1915 1947 6.989759 GTGTTGGTAAATCCATTTTTCTGGTT 59.010 34.615 0.00 0.00 46.60 3.67
1927 1959 7.122650 TCCATTTTTCTGGTTCAGCTTATTAGG 59.877 37.037 0.00 0.00 37.57 2.69
1941 1973 6.825721 CAGCTTATTAGGAAGTGGTTCATCTT 59.174 38.462 0.00 0.00 33.93 2.40
1952 1984 8.021396 GGAAGTGGTTCATCTTACATGTAAAAC 58.979 37.037 18.55 17.73 33.93 2.43
2118 2150 3.713764 TCCACCCAACCAAATGTTCAAAT 59.286 39.130 0.00 0.00 34.00 2.32
2195 2227 6.857437 TCATGACTCAGACCTTCTCAATTA 57.143 37.500 0.00 0.00 0.00 1.40
2236 2268 9.502091 TCAATGTTTAAGACTATGCAGTACTTT 57.498 29.630 0.00 0.00 34.21 2.66
2248 2280 5.843673 TGCAGTACTTTTTCAAACCATCA 57.156 34.783 0.00 0.00 0.00 3.07
2275 2307 8.986477 ATTATAAATTTTCACCAAGCTGTCAC 57.014 30.769 0.00 0.00 0.00 3.67
2356 2388 7.928706 CGACCAGAAGTGAAGGAATATTATTCT 59.071 37.037 14.46 0.00 0.00 2.40
2440 2473 7.285629 TGTGTGGGACAAGTAATATTTGAACAA 59.714 33.333 2.47 0.00 44.16 2.83
2470 2503 8.627208 ATTTGGCTAGTATAATCATGAACTGG 57.373 34.615 0.00 1.62 0.00 4.00
2471 2504 6.747414 TGGCTAGTATAATCATGAACTGGT 57.253 37.500 0.00 0.00 0.00 4.00
2472 2505 6.524734 TGGCTAGTATAATCATGAACTGGTG 58.475 40.000 0.00 0.00 0.00 4.17
2473 2506 6.099701 TGGCTAGTATAATCATGAACTGGTGT 59.900 38.462 0.00 0.00 0.00 4.16
2474 2507 6.647067 GGCTAGTATAATCATGAACTGGTGTC 59.353 42.308 0.00 0.00 0.00 3.67
2476 2509 7.596995 GCTAGTATAATCATGAACTGGTGTCTC 59.403 40.741 0.00 0.00 0.00 3.36
2479 2519 4.897509 AATCATGAACTGGTGTCTCAGA 57.102 40.909 0.00 0.00 38.11 3.27
2485 2525 7.223584 TCATGAACTGGTGTCTCAGAAATTTA 58.776 34.615 0.00 0.00 38.11 1.40
2520 2569 0.753867 TTTGTACTCGTGGTGCCTCA 59.246 50.000 0.00 0.00 0.00 3.86
2522 2571 0.973632 TGTACTCGTGGTGCCTCATT 59.026 50.000 0.00 0.00 0.00 2.57
2535 2584 3.983344 GTGCCTCATTAGTTTGCAGTTTG 59.017 43.478 0.00 0.00 31.69 2.93
2570 2619 2.474359 GCTGATGCATAGTACTGAAGCG 59.526 50.000 5.39 0.00 39.41 4.68
2573 2622 3.865164 TGATGCATAGTACTGAAGCGTTG 59.135 43.478 5.39 0.00 0.00 4.10
2630 2679 2.910688 AGTGCTATCGGTTATGTGGG 57.089 50.000 0.00 0.00 0.00 4.61
2642 2691 4.217550 CGGTTATGTGGGAACATGAAAACT 59.782 41.667 0.00 0.00 46.14 2.66
2645 2694 6.381801 GTTATGTGGGAACATGAAAACTGAG 58.618 40.000 0.00 0.00 46.14 3.35
2651 2700 5.163205 TGGGAACATGAAAACTGAGAGAGAA 60.163 40.000 0.00 0.00 33.40 2.87
2695 2745 6.349300 TCTGGTTCTGGAATCTTAGTTATGC 58.651 40.000 0.00 0.00 0.00 3.14
2700 2750 9.343539 GGTTCTGGAATCTTAGTTATGCTTAAT 57.656 33.333 0.00 0.00 0.00 1.40
2719 2769 6.794158 GCTTAATTTAGCAGATTCATAGTGCG 59.206 38.462 11.44 0.00 42.26 5.34
2724 2774 3.801698 AGCAGATTCATAGTGCGAACAT 58.198 40.909 0.00 0.00 42.26 2.71
2740 2790 1.668419 ACATCCTTCGCTGGCATTAC 58.332 50.000 0.00 0.00 0.00 1.89
2752 2802 4.324402 CGCTGGCATTACATTTGAAGAAAC 59.676 41.667 0.00 0.00 0.00 2.78
2794 2850 6.485830 TGTTGAATGTTCCCCATTTTAACA 57.514 33.333 11.42 11.42 43.87 2.41
2863 2919 1.732259 GGTTGGTGTAGTGCAGATTCG 59.268 52.381 0.00 0.00 0.00 3.34
2871 2927 2.611225 AGTGCAGATTCGGGATCTTC 57.389 50.000 0.00 0.00 42.55 2.87
2949 3005 0.238289 GTGTGTGTCCTCAATTGCGG 59.762 55.000 8.23 8.23 0.00 5.69
2974 3030 9.404848 GGCTTTCTAGTAATAATTGTACCCTTT 57.595 33.333 0.00 0.00 0.00 3.11
3008 3064 7.041780 ACAAAAGAACAGCACTAGAGTATGTTG 60.042 37.037 14.04 5.75 37.30 3.33
3019 3075 8.552034 GCACTAGAGTATGTTGGCTTAAATAAG 58.448 37.037 0.00 0.00 36.40 1.73
3062 3118 5.762825 TTTCAAATATGAGGCAGCTGATC 57.237 39.130 20.43 15.00 36.78 2.92
3076 3132 7.229308 AGGCAGCTGATCATATTTTCTTCATA 58.771 34.615 20.43 0.00 0.00 2.15
3079 3135 9.909644 GCAGCTGATCATATTTTCTTCATAATT 57.090 29.630 20.43 0.00 0.00 1.40
3117 3173 3.185246 GCATGGCTCTGCTTTAGTAGA 57.815 47.619 0.00 0.00 39.12 2.59
3118 3174 3.535561 GCATGGCTCTGCTTTAGTAGAA 58.464 45.455 0.00 0.00 39.12 2.10
3119 3175 3.941483 GCATGGCTCTGCTTTAGTAGAAA 59.059 43.478 0.00 0.00 39.12 2.52
3120 3176 4.201861 GCATGGCTCTGCTTTAGTAGAAAC 60.202 45.833 0.00 0.00 39.12 2.78
3121 3177 4.891992 TGGCTCTGCTTTAGTAGAAACT 57.108 40.909 0.00 0.00 36.37 2.66
3122 3178 5.995565 TGGCTCTGCTTTAGTAGAAACTA 57.004 39.130 0.00 0.00 36.37 2.24
3200 3258 2.677228 CCGGGCAAGATGGAAGGT 59.323 61.111 0.00 0.00 0.00 3.50
4505 7292 2.750637 GATGGCAGCTGCAGCAGT 60.751 61.111 38.24 18.36 45.16 4.40
5149 8123 9.347240 TCTTGTTTCTTCTGAAATCTGAAATCT 57.653 29.630 6.02 0.00 43.14 2.40
5151 8125 8.681486 TGTTTCTTCTGAAATCTGAAATCTGA 57.319 30.769 6.02 0.00 43.14 3.27
5152 8126 9.123902 TGTTTCTTCTGAAATCTGAAATCTGAA 57.876 29.630 6.02 11.82 43.14 3.02
5153 8127 9.956720 GTTTCTTCTGAAATCTGAAATCTGAAA 57.043 29.630 12.77 7.32 43.14 2.69
5156 8130 8.954350 TCTTCTGAAATCTGAAATCTGAAATCC 58.046 33.333 12.77 0.00 34.24 3.01
5157 8131 8.640063 TTCTGAAATCTGAAATCTGAAATCCA 57.360 30.769 10.68 0.00 32.14 3.41
5204 8178 8.727910 CATGCTGATATCTATGTATGCAAAAGT 58.272 33.333 3.98 0.00 32.88 2.66
5245 8219 5.356190 AGTTATTGCTTCAGTCATCACATGG 59.644 40.000 0.00 0.00 0.00 3.66
5256 8230 9.571816 TTCAGTCATCACATGGCAATTAATATA 57.428 29.630 0.00 0.00 37.34 0.86
5293 8267 6.899393 TTCATGCAGAACCTTACTTGAAAT 57.101 33.333 0.00 0.00 0.00 2.17
5363 8353 7.037438 GCACCAAAATAGTTGATCAATCACAT 58.963 34.615 12.12 0.19 36.36 3.21
5417 8407 7.390162 TGTGTAGCATTTATCACTGACAATTCA 59.610 33.333 0.00 0.00 0.00 2.57
5424 8414 0.883833 CACTGACAATTCACCTGGCC 59.116 55.000 0.00 0.00 0.00 5.36
5426 8416 0.038744 CTGACAATTCACCTGGCCCT 59.961 55.000 0.00 0.00 0.00 5.19
5470 8460 6.547510 TGCTCTAGCTCAGTAATATGAAGTCA 59.452 38.462 3.26 0.00 42.66 3.41
5482 8472 9.838339 AGTAATATGAAGTCATTAACCCTCAAG 57.162 33.333 0.00 0.00 37.76 3.02
5519 8509 4.576216 AACACATCGCCATGTTTACAAA 57.424 36.364 0.00 0.00 40.66 2.83
5528 8518 7.354025 TCGCCATGTTTACAAATATATACCG 57.646 36.000 0.00 0.00 0.00 4.02
5594 8584 3.170717 AGGAGGTAGGTTTGATCACGAA 58.829 45.455 0.00 0.00 0.00 3.85
5618 8608 4.331968 TGGGAAACATCAATGTACTCCAC 58.668 43.478 18.68 12.09 41.34 4.02
5624 8614 5.505181 ACATCAATGTACTCCACCTCTTT 57.495 39.130 0.00 0.00 39.68 2.52
5711 8701 3.471680 TCACAACATCCACATTGAACGA 58.528 40.909 0.00 0.00 0.00 3.85
5777 8767 1.443872 GACTAGCACCACGACCACG 60.444 63.158 0.00 0.00 45.75 4.94
5912 8902 3.118445 TCGGTGGATTGATTAGCACATCA 60.118 43.478 0.00 0.00 0.00 3.07
5917 8907 5.801947 GTGGATTGATTAGCACATCAAACAC 59.198 40.000 20.59 20.59 44.48 3.32
6007 8997 6.087291 CACTGAGTTTTTCGATGCATTTTCTC 59.913 38.462 0.00 3.73 0.00 2.87
6011 9001 4.740741 TTTTCGATGCATTTTCTCGTCA 57.259 36.364 0.00 0.00 34.19 4.35
6034 9024 6.694877 AGACAATACTTGTATGAGCTACGA 57.305 37.500 0.00 0.00 45.52 3.43
6036 9026 7.142021 AGACAATACTTGTATGAGCTACGATG 58.858 38.462 0.00 0.00 45.52 3.84
6050 9040 3.121944 GCTACGATGGATTGATTAGCACG 59.878 47.826 0.00 0.00 33.60 5.34
6073 9063 1.927174 GAACATCGTTGATGAGGACCG 59.073 52.381 13.36 0.00 42.09 4.79
6080 9070 2.561569 GTTGATGAGGACCGGGTTATG 58.438 52.381 6.32 0.00 0.00 1.90
6081 9071 1.128200 TGATGAGGACCGGGTTATGG 58.872 55.000 6.32 0.00 0.00 2.74
6151 9141 3.127030 GCTTATGCTAGGCAGAACGTTTT 59.873 43.478 0.46 0.00 43.65 2.43
6240 9230 5.356882 TTCTGGCGTGTTAGAATTTCAAG 57.643 39.130 0.00 0.00 0.00 3.02
6301 9291 4.712122 ATTAAATATATTTGCCCCCGCG 57.288 40.909 18.98 0.00 38.08 6.46
6304 9294 2.863132 ATATATTTGCCCCCGCGTAA 57.137 45.000 4.92 0.00 38.08 3.18
6332 9322 1.000274 GGTGGTGTGCCTGTCAAAATC 60.000 52.381 0.00 0.00 35.27 2.17
6338 9328 5.822519 TGGTGTGCCTGTCAAAATCTATATC 59.177 40.000 0.00 0.00 35.27 1.63
6385 9375 1.878953 CGCAGTTTGTGGGTTACTCT 58.121 50.000 0.00 0.00 34.37 3.24
6442 9432 1.927174 CTTCGGTAGTCTGGATTTGCG 59.073 52.381 0.00 0.00 0.00 4.85
6524 10712 0.375106 GCACGCTTCCATGAGTAAGC 59.625 55.000 14.03 14.03 43.71 3.09
6559 10747 4.585879 TGGGTCTAGGTAAGATGTTTTGC 58.414 43.478 0.00 0.00 36.36 3.68
6585 10773 9.368674 CTTGATGGTATCAGATATTCAGATCAC 57.631 37.037 0.00 0.00 40.94 3.06
6630 10818 5.940470 ACGATTTGCTAGGTTTTCAGAAGAT 59.060 36.000 0.00 0.00 0.00 2.40
6636 10824 5.044558 GCTAGGTTTTCAGAAGATCGTAGG 58.955 45.833 0.00 0.00 0.00 3.18
6717 10905 8.476064 AAAATGGATTATGTACATGCATACCA 57.524 30.769 18.81 17.96 31.97 3.25
6718 10906 7.692460 AATGGATTATGTACATGCATACCAG 57.308 36.000 18.81 0.00 33.71 4.00
6719 10907 6.186420 TGGATTATGTACATGCATACCAGT 57.814 37.500 18.81 0.00 31.77 4.00
6720 10908 7.309770 TGGATTATGTACATGCATACCAGTA 57.690 36.000 18.81 0.00 31.77 2.74
6721 10909 7.917003 TGGATTATGTACATGCATACCAGTAT 58.083 34.615 18.81 0.00 31.77 2.12
6722 10910 8.040727 TGGATTATGTACATGCATACCAGTATC 58.959 37.037 18.81 4.01 31.77 2.24
6910 11681 2.375014 TCTGGTCCAAAACTTTCCCC 57.625 50.000 0.00 0.00 0.00 4.81
6912 11683 1.963515 CTGGTCCAAAACTTTCCCCTG 59.036 52.381 0.00 0.00 0.00 4.45
6915 11686 3.052793 TGGTCCAAAACTTTCCCCTGTTA 60.053 43.478 0.00 0.00 0.00 2.41
6917 11688 3.005472 GTCCAAAACTTTCCCCTGTTAGC 59.995 47.826 0.00 0.00 0.00 3.09
6924 11695 4.740902 ACTTTCCCCTGTTAGCATTTCTT 58.259 39.130 0.00 0.00 0.00 2.52
6925 11696 4.524328 ACTTTCCCCTGTTAGCATTTCTTG 59.476 41.667 0.00 0.00 0.00 3.02
6941 11712 7.047460 CATTTCTTGCATTTTAGCTATCCCT 57.953 36.000 0.00 0.00 34.99 4.20
6943 11714 7.807977 TTTCTTGCATTTTAGCTATCCCTAG 57.192 36.000 0.00 0.00 34.99 3.02
6944 11715 6.500589 TCTTGCATTTTAGCTATCCCTAGT 57.499 37.500 0.00 0.00 34.99 2.57
6963 11734 8.648693 TCCCTAGTTTATTTCCTCTTATAGTGC 58.351 37.037 0.00 0.00 0.00 4.40
6964 11735 8.429641 CCCTAGTTTATTTCCTCTTATAGTGCA 58.570 37.037 0.00 0.00 0.00 4.57
6965 11736 9.832445 CCTAGTTTATTTCCTCTTATAGTGCAA 57.168 33.333 0.00 0.00 0.00 4.08
6976 11747 2.200373 ATAGTGCAAACTGGACCACC 57.800 50.000 0.00 0.00 39.72 4.61
6978 11749 0.033601 AGTGCAAACTGGACCACCAA 60.034 50.000 0.00 0.00 46.32 3.67
6987 11758 1.599518 GGACCACCAACGCATGTGA 60.600 57.895 14.43 0.00 34.37 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.213678 TCATCTTCTGGGCCATTCAGG 59.786 52.381 6.72 0.00 41.84 3.86
75 76 2.573369 CTCATCTTCTGGGCCATTCAG 58.427 52.381 6.72 2.53 0.00 3.02
76 77 1.409241 GCTCATCTTCTGGGCCATTCA 60.409 52.381 6.72 0.00 46.40 2.57
77 78 1.316651 GCTCATCTTCTGGGCCATTC 58.683 55.000 6.72 0.00 46.40 2.67
78 79 3.509517 GCTCATCTTCTGGGCCATT 57.490 52.632 6.72 0.00 46.40 3.16
83 84 3.553922 GGATTACGAGCTCATCTTCTGGG 60.554 52.174 15.40 0.00 0.00 4.45
84 85 3.068732 TGGATTACGAGCTCATCTTCTGG 59.931 47.826 15.40 0.00 0.00 3.86
85 86 4.313277 TGGATTACGAGCTCATCTTCTG 57.687 45.455 15.40 0.00 0.00 3.02
86 87 4.021544 GGATGGATTACGAGCTCATCTTCT 60.022 45.833 15.40 0.00 35.76 2.85
87 88 4.241681 GGATGGATTACGAGCTCATCTTC 58.758 47.826 15.40 10.03 35.76 2.87
88 89 3.007398 GGGATGGATTACGAGCTCATCTT 59.993 47.826 15.40 1.93 35.76 2.40
89 90 2.564947 GGGATGGATTACGAGCTCATCT 59.435 50.000 15.40 0.00 35.76 2.90
90 91 2.354203 GGGGATGGATTACGAGCTCATC 60.354 54.545 15.40 9.18 34.98 2.92
91 92 1.625818 GGGGATGGATTACGAGCTCAT 59.374 52.381 15.40 0.00 0.00 2.90
92 93 1.048601 GGGGATGGATTACGAGCTCA 58.951 55.000 15.40 0.00 0.00 4.26
93 94 0.321996 GGGGGATGGATTACGAGCTC 59.678 60.000 2.73 2.73 0.00 4.09
94 95 2.453242 GGGGGATGGATTACGAGCT 58.547 57.895 0.00 0.00 0.00 4.09
126 127 3.774702 GAGGAACGCGTGCGGTTC 61.775 66.667 14.98 11.32 40.58 3.62
135 136 3.255379 GCGATGTCCGAGGAACGC 61.255 66.667 17.92 17.92 41.76 4.84
136 137 2.949678 CGCGATGTCCGAGGAACG 60.950 66.667 0.00 2.15 41.76 3.95
137 138 2.158959 CACGCGATGTCCGAGGAAC 61.159 63.158 15.93 0.00 42.49 3.62
138 139 2.180769 CACGCGATGTCCGAGGAA 59.819 61.111 15.93 0.00 42.49 3.36
139 140 4.492160 GCACGCGATGTCCGAGGA 62.492 66.667 15.93 0.00 42.49 3.71
140 141 4.498520 AGCACGCGATGTCCGAGG 62.499 66.667 15.93 0.00 42.49 4.63
141 142 3.250323 CAGCACGCGATGTCCGAG 61.250 66.667 15.93 0.00 43.81 4.63
142 143 4.794439 CCAGCACGCGATGTCCGA 62.794 66.667 15.93 0.00 41.76 4.55
143 144 4.794439 TCCAGCACGCGATGTCCG 62.794 66.667 15.93 0.00 42.21 4.79
144 145 2.202932 ATCCAGCACGCGATGTCC 60.203 61.111 15.93 0.00 0.00 4.02
145 146 1.519234 TCATCCAGCACGCGATGTC 60.519 57.895 15.93 4.21 37.67 3.06
146 147 1.811266 GTCATCCAGCACGCGATGT 60.811 57.895 15.93 0.00 37.67 3.06
147 148 2.528743 GGTCATCCAGCACGCGATG 61.529 63.158 15.93 8.90 37.76 3.84
148 149 2.202932 GGTCATCCAGCACGCGAT 60.203 61.111 15.93 0.00 0.00 4.58
149 150 3.356639 GAGGTCATCCAGCACGCGA 62.357 63.158 15.93 0.00 35.89 5.87
150 151 2.887568 GAGGTCATCCAGCACGCG 60.888 66.667 3.53 3.53 35.89 6.01
151 152 2.635229 ATCGAGGTCATCCAGCACGC 62.635 60.000 0.00 0.00 35.89 5.34
152 153 0.873312 CATCGAGGTCATCCAGCACG 60.873 60.000 0.00 0.00 35.89 5.34
153 154 0.461548 TCATCGAGGTCATCCAGCAC 59.538 55.000 0.00 0.00 35.89 4.40
154 155 0.749049 CTCATCGAGGTCATCCAGCA 59.251 55.000 0.00 0.00 35.89 4.41
155 156 0.033228 CCTCATCGAGGTCATCCAGC 59.967 60.000 1.64 0.00 44.25 4.85
165 166 1.817099 GCCAGCAACCCTCATCGAG 60.817 63.158 0.00 0.00 0.00 4.04
166 167 2.268920 GCCAGCAACCCTCATCGA 59.731 61.111 0.00 0.00 0.00 3.59
167 168 2.825836 GGCCAGCAACCCTCATCG 60.826 66.667 0.00 0.00 0.00 3.84
168 169 1.751927 CTGGCCAGCAACCCTCATC 60.752 63.158 22.33 0.00 0.00 2.92
169 170 2.233566 TCTGGCCAGCAACCCTCAT 61.234 57.895 28.91 0.00 0.00 2.90
170 171 2.853542 TCTGGCCAGCAACCCTCA 60.854 61.111 28.91 4.97 0.00 3.86
171 172 2.360475 GTCTGGCCAGCAACCCTC 60.360 66.667 28.91 7.92 0.00 4.30
172 173 4.335647 CGTCTGGCCAGCAACCCT 62.336 66.667 28.91 0.00 0.00 4.34
173 174 4.643387 ACGTCTGGCCAGCAACCC 62.643 66.667 28.91 11.44 0.00 4.11
174 175 3.050275 GACGTCTGGCCAGCAACC 61.050 66.667 28.91 13.90 0.00 3.77
175 176 3.414700 CGACGTCTGGCCAGCAAC 61.415 66.667 28.91 20.40 0.00 4.17
179 180 3.865929 AACTGCGACGTCTGGCCAG 62.866 63.158 27.87 27.87 0.00 4.85
180 181 3.858868 GAACTGCGACGTCTGGCCA 62.859 63.158 14.70 4.71 0.00 5.36
181 182 3.112709 GAACTGCGACGTCTGGCC 61.113 66.667 14.70 0.00 0.00 5.36
182 183 3.470567 CGAACTGCGACGTCTGGC 61.471 66.667 14.70 11.21 44.57 4.85
183 184 2.805353 CCGAACTGCGACGTCTGG 60.805 66.667 14.70 5.90 44.57 3.86
184 185 2.742710 TTCCCGAACTGCGACGTCTG 62.743 60.000 14.70 8.46 44.57 3.51
185 186 1.874345 ATTCCCGAACTGCGACGTCT 61.874 55.000 14.70 0.00 44.57 4.18
186 187 1.411493 GATTCCCGAACTGCGACGTC 61.411 60.000 5.18 5.18 44.57 4.34
187 188 1.445582 GATTCCCGAACTGCGACGT 60.446 57.895 0.00 0.00 44.57 4.34
188 189 2.505498 CGATTCCCGAACTGCGACG 61.505 63.158 0.00 0.00 44.57 5.12
189 190 2.799540 GCGATTCCCGAACTGCGAC 61.800 63.158 0.00 0.00 44.57 5.19
190 191 2.508439 GCGATTCCCGAACTGCGA 60.508 61.111 0.00 0.00 44.57 5.10
191 192 2.509336 AGCGATTCCCGAACTGCG 60.509 61.111 0.00 0.00 41.76 5.18
192 193 2.174319 GGAGCGATTCCCGAACTGC 61.174 63.158 0.00 0.00 40.37 4.40
193 194 4.110493 GGAGCGATTCCCGAACTG 57.890 61.111 0.00 0.00 40.37 3.16
200 201 1.153349 GTGGTGAGGGAGCGATTCC 60.153 63.158 0.00 0.00 46.00 3.01
201 202 1.519455 CGTGGTGAGGGAGCGATTC 60.519 63.158 0.00 0.00 0.00 2.52
202 203 2.579201 CGTGGTGAGGGAGCGATT 59.421 61.111 0.00 0.00 0.00 3.34
203 204 4.148825 GCGTGGTGAGGGAGCGAT 62.149 66.667 0.00 0.00 0.00 4.58
206 207 3.665675 ATTCGCGTGGTGAGGGAGC 62.666 63.158 5.77 0.00 32.22 4.70
207 208 1.519455 GATTCGCGTGGTGAGGGAG 60.519 63.158 5.77 0.00 32.22 4.30
208 209 1.613317 ATGATTCGCGTGGTGAGGGA 61.613 55.000 5.77 0.00 0.00 4.20
209 210 1.153369 ATGATTCGCGTGGTGAGGG 60.153 57.895 5.77 0.00 0.00 4.30
210 211 0.179100 AGATGATTCGCGTGGTGAGG 60.179 55.000 5.77 0.00 0.00 3.86
211 212 1.590238 GAAGATGATTCGCGTGGTGAG 59.410 52.381 5.77 0.00 0.00 3.51
212 213 1.640428 GAAGATGATTCGCGTGGTGA 58.360 50.000 5.77 0.00 0.00 4.02
213 214 0.298707 CGAAGATGATTCGCGTGGTG 59.701 55.000 5.77 0.00 35.05 4.17
214 215 2.665777 CGAAGATGATTCGCGTGGT 58.334 52.632 5.77 0.00 35.05 4.16
220 221 0.314578 GCACACGCGAAGATGATTCG 60.315 55.000 15.93 5.68 44.06 3.34
221 222 0.026803 GGCACACGCGAAGATGATTC 59.973 55.000 15.93 0.00 39.92 2.52
222 223 0.391661 AGGCACACGCGAAGATGATT 60.392 50.000 15.93 0.00 39.92 2.57
223 224 0.807667 GAGGCACACGCGAAGATGAT 60.808 55.000 15.93 0.00 39.92 2.45
224 225 1.446099 GAGGCACACGCGAAGATGA 60.446 57.895 15.93 0.00 39.92 2.92
225 226 1.446792 AGAGGCACACGCGAAGATG 60.447 57.895 15.93 2.09 39.92 2.90
226 227 1.446792 CAGAGGCACACGCGAAGAT 60.447 57.895 15.93 0.00 39.92 2.40
227 228 2.049156 CAGAGGCACACGCGAAGA 60.049 61.111 15.93 0.00 39.92 2.87
228 229 3.114616 CCAGAGGCACACGCGAAG 61.115 66.667 15.93 7.57 39.92 3.79
258 259 4.980805 TCGCAGTTGCCGGTGACC 62.981 66.667 1.90 0.00 37.91 4.02
259 260 3.712881 GTCGCAGTTGCCGGTGAC 61.713 66.667 1.90 1.72 38.71 3.67
260 261 4.228567 TGTCGCAGTTGCCGGTGA 62.229 61.111 1.90 0.00 37.91 4.02
261 262 4.012895 GTGTCGCAGTTGCCGGTG 62.013 66.667 1.90 0.00 37.91 4.94
267 268 3.276091 TTGCCGGTGTCGCAGTTG 61.276 61.111 1.90 0.00 34.56 3.16
268 269 3.276846 GTTGCCGGTGTCGCAGTT 61.277 61.111 1.90 0.00 34.56 3.16
269 270 4.235762 AGTTGCCGGTGTCGCAGT 62.236 61.111 1.90 0.00 34.56 4.40
270 271 3.716006 CAGTTGCCGGTGTCGCAG 61.716 66.667 1.90 0.00 34.56 5.18
274 275 3.712881 GTCGCAGTTGCCGGTGTC 61.713 66.667 1.90 0.00 37.91 3.67
275 276 4.539083 TGTCGCAGTTGCCGGTGT 62.539 61.111 1.90 0.00 37.91 4.16
276 277 4.012895 GTGTCGCAGTTGCCGGTG 62.013 66.667 1.90 0.00 37.91 4.94
282 283 4.012895 GTGCCGGTGTCGCAGTTG 62.013 66.667 1.90 0.00 34.56 3.16
301 302 4.554036 GATGGTCTCCCAGCCGCC 62.554 72.222 0.00 0.00 46.15 6.13
302 303 4.899239 CGATGGTCTCCCAGCCGC 62.899 72.222 0.00 0.00 44.57 6.53
303 304 3.147595 TCGATGGTCTCCCAGCCG 61.148 66.667 0.00 0.00 44.57 5.52
304 305 2.501610 GTCGATGGTCTCCCAGCC 59.498 66.667 0.00 0.00 44.57 4.85
305 306 2.105128 CGTCGATGGTCTCCCAGC 59.895 66.667 0.00 0.00 46.15 4.85
306 307 2.105128 GCGTCGATGGTCTCCCAG 59.895 66.667 6.79 0.00 46.15 4.45
308 309 4.570663 CGGCGTCGATGGTCTCCC 62.571 72.222 1.44 0.00 39.00 4.30
322 323 3.443045 CAATCACCAGGTGGCGGC 61.443 66.667 20.14 0.00 39.32 6.53
323 324 2.751436 CCAATCACCAGGTGGCGG 60.751 66.667 20.14 13.31 39.32 6.13
324 325 2.751436 CCCAATCACCAGGTGGCG 60.751 66.667 20.14 8.16 39.32 5.69
325 326 2.362889 CCCCAATCACCAGGTGGC 60.363 66.667 20.14 0.00 39.32 5.01
326 327 2.362889 GCCCCAATCACCAGGTGG 60.363 66.667 20.14 3.07 42.17 4.61
327 328 2.751436 CGCCCCAATCACCAGGTG 60.751 66.667 14.19 14.19 34.45 4.00
328 329 4.740822 GCGCCCCAATCACCAGGT 62.741 66.667 0.00 0.00 0.00 4.00
329 330 4.738998 TGCGCCCCAATCACCAGG 62.739 66.667 4.18 0.00 0.00 4.45
330 331 3.443045 GTGCGCCCCAATCACCAG 61.443 66.667 4.18 0.00 0.00 4.00
351 352 3.920093 GAGGGGAACAAGGGCGTGG 62.920 68.421 0.00 0.00 0.00 4.94
352 353 2.359975 GAGGGGAACAAGGGCGTG 60.360 66.667 0.00 0.00 0.00 5.34
353 354 3.647771 GGAGGGGAACAAGGGCGT 61.648 66.667 0.00 0.00 0.00 5.68
354 355 4.778143 CGGAGGGGAACAAGGGCG 62.778 72.222 0.00 0.00 0.00 6.13
356 357 4.778143 CGCGGAGGGGAACAAGGG 62.778 72.222 0.00 0.00 36.55 3.95
357 358 3.665675 CTCGCGGAGGGGAACAAGG 62.666 68.421 6.13 0.00 42.39 3.61
358 359 2.125512 CTCGCGGAGGGGAACAAG 60.126 66.667 6.13 0.00 42.39 3.16
359 360 4.388499 GCTCGCGGAGGGGAACAA 62.388 66.667 6.13 0.00 42.39 2.83
377 378 2.801631 GCGAGAGAGATGGTGGGGG 61.802 68.421 0.00 0.00 0.00 5.40
378 379 1.743321 GAGCGAGAGAGATGGTGGGG 61.743 65.000 0.00 0.00 0.00 4.96
379 380 1.739049 GAGCGAGAGAGATGGTGGG 59.261 63.158 0.00 0.00 0.00 4.61
380 381 1.098129 TCGAGCGAGAGAGATGGTGG 61.098 60.000 0.00 0.00 0.00 4.61
381 382 0.028770 GTCGAGCGAGAGAGATGGTG 59.971 60.000 0.00 0.00 0.00 4.17
382 383 0.107410 AGTCGAGCGAGAGAGATGGT 60.107 55.000 0.00 0.00 0.00 3.55
383 384 0.307453 CAGTCGAGCGAGAGAGATGG 59.693 60.000 0.00 0.00 0.00 3.51
384 385 0.307453 CCAGTCGAGCGAGAGAGATG 59.693 60.000 0.00 0.00 0.00 2.90
385 386 0.817634 CCCAGTCGAGCGAGAGAGAT 60.818 60.000 0.00 0.00 0.00 2.75
386 387 1.450491 CCCAGTCGAGCGAGAGAGA 60.450 63.158 0.00 0.00 0.00 3.10
387 388 3.106552 CCCAGTCGAGCGAGAGAG 58.893 66.667 0.00 0.00 0.00 3.20
388 389 3.134792 GCCCAGTCGAGCGAGAGA 61.135 66.667 0.00 0.00 0.00 3.10
389 390 4.200283 GGCCCAGTCGAGCGAGAG 62.200 72.222 0.00 0.00 0.00 3.20
397 398 4.530857 GATCCCACGGCCCAGTCG 62.531 72.222 0.00 0.00 36.42 4.18
398 399 3.083997 AGATCCCACGGCCCAGTC 61.084 66.667 0.00 0.00 0.00 3.51
399 400 3.402681 CAGATCCCACGGCCCAGT 61.403 66.667 0.00 0.00 0.00 4.00
400 401 3.083349 TCAGATCCCACGGCCCAG 61.083 66.667 0.00 0.00 0.00 4.45
401 402 3.399181 GTCAGATCCCACGGCCCA 61.399 66.667 0.00 0.00 0.00 5.36
402 403 4.530857 CGTCAGATCCCACGGCCC 62.531 72.222 0.00 0.00 32.19 5.80
403 404 2.907897 CTTCGTCAGATCCCACGGCC 62.908 65.000 12.71 0.00 36.64 6.13
404 405 1.519455 CTTCGTCAGATCCCACGGC 60.519 63.158 12.71 0.00 36.64 5.68
405 406 0.101399 CTCTTCGTCAGATCCCACGG 59.899 60.000 12.71 0.54 36.64 4.94
406 407 0.526524 GCTCTTCGTCAGATCCCACG 60.527 60.000 7.56 7.56 37.36 4.94
407 408 0.532573 TGCTCTTCGTCAGATCCCAC 59.467 55.000 0.00 0.00 0.00 4.61
408 409 1.066858 GTTGCTCTTCGTCAGATCCCA 60.067 52.381 0.00 0.00 0.00 4.37
409 410 1.646189 GTTGCTCTTCGTCAGATCCC 58.354 55.000 0.00 0.00 0.00 3.85
410 411 1.646189 GGTTGCTCTTCGTCAGATCC 58.354 55.000 0.00 0.00 0.00 3.36
411 412 1.272781 CGGTTGCTCTTCGTCAGATC 58.727 55.000 0.00 0.00 0.00 2.75
412 413 0.737715 GCGGTTGCTCTTCGTCAGAT 60.738 55.000 0.00 0.00 38.39 2.90
413 414 1.372997 GCGGTTGCTCTTCGTCAGA 60.373 57.895 0.00 0.00 38.39 3.27
414 415 2.383527 GGCGGTTGCTCTTCGTCAG 61.384 63.158 0.00 0.00 42.25 3.51
415 416 2.357034 GGCGGTTGCTCTTCGTCA 60.357 61.111 0.00 0.00 42.25 4.35
416 417 2.357034 TGGCGGTTGCTCTTCGTC 60.357 61.111 0.00 0.00 42.25 4.20
417 418 2.357517 CTGGCGGTTGCTCTTCGT 60.358 61.111 0.00 0.00 42.25 3.85
418 419 3.121030 CCTGGCGGTTGCTCTTCG 61.121 66.667 0.00 0.00 42.25 3.79
419 420 2.747855 CCCTGGCGGTTGCTCTTC 60.748 66.667 0.00 0.00 42.25 2.87
420 421 4.351054 CCCCTGGCGGTTGCTCTT 62.351 66.667 0.00 0.00 42.25 2.85
422 423 4.785453 CTCCCCTGGCGGTTGCTC 62.785 72.222 0.00 0.00 42.25 4.26
431 432 4.499116 ATCGTCCCCCTCCCCTGG 62.499 72.222 0.00 0.00 0.00 4.45
432 433 3.164269 CATCGTCCCCCTCCCCTG 61.164 72.222 0.00 0.00 0.00 4.45
433 434 4.499116 CCATCGTCCCCCTCCCCT 62.499 72.222 0.00 0.00 0.00 4.79
441 442 3.917760 CTCTCGCCCCATCGTCCC 61.918 72.222 0.00 0.00 0.00 4.46
442 443 3.917760 CCTCTCGCCCCATCGTCC 61.918 72.222 0.00 0.00 0.00 4.79
443 444 3.917760 CCCTCTCGCCCCATCGTC 61.918 72.222 0.00 0.00 0.00 4.20
446 447 4.880426 TCCCCCTCTCGCCCCATC 62.880 72.222 0.00 0.00 0.00 3.51
447 448 4.888325 CTCCCCCTCTCGCCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
454 455 2.380571 CTAGCCTCCCTCCCCCTCTC 62.381 70.000 0.00 0.00 0.00 3.20
455 456 2.288847 TAGCCTCCCTCCCCCTCT 60.289 66.667 0.00 0.00 0.00 3.69
456 457 1.745879 ATCTAGCCTCCCTCCCCCTC 61.746 65.000 0.00 0.00 0.00 4.30
457 458 0.406612 TATCTAGCCTCCCTCCCCCT 60.407 60.000 0.00 0.00 0.00 4.79
458 459 0.492276 TTATCTAGCCTCCCTCCCCC 59.508 60.000 0.00 0.00 0.00 5.40
459 460 1.945580 CTTATCTAGCCTCCCTCCCC 58.054 60.000 0.00 0.00 0.00 4.81
460 461 1.271856 GCTTATCTAGCCTCCCTCCC 58.728 60.000 0.00 0.00 44.48 4.30
470 471 2.430921 CCGCGCGGGCTTATCTAG 60.431 66.667 40.50 11.24 36.88 2.43
479 480 4.326766 CATTAATGGCCGCGCGGG 62.327 66.667 45.81 29.29 39.58 6.13
480 481 4.326766 CCATTAATGGCCGCGCGG 62.327 66.667 43.13 43.13 41.75 6.46
489 490 0.525242 CGCAACCACCGCCATTAATG 60.525 55.000 8.58 8.58 0.00 1.90
490 491 1.662438 CCGCAACCACCGCCATTAAT 61.662 55.000 0.00 0.00 0.00 1.40
491 492 2.336478 CCGCAACCACCGCCATTAA 61.336 57.895 0.00 0.00 0.00 1.40
492 493 2.748251 CCGCAACCACCGCCATTA 60.748 61.111 0.00 0.00 0.00 1.90
500 501 3.436055 TAATGGCGCCGCAACCAC 61.436 61.111 23.90 0.00 39.19 4.16
501 502 3.436055 GTAATGGCGCCGCAACCA 61.436 61.111 23.90 2.33 41.06 3.67
502 503 3.108357 GAGTAATGGCGCCGCAACC 62.108 63.158 23.90 8.44 0.00 3.77
503 504 2.403586 GAGTAATGGCGCCGCAAC 59.596 61.111 23.90 18.72 0.00 4.17
504 505 3.192230 CGAGTAATGGCGCCGCAA 61.192 61.111 23.90 4.21 0.00 4.85
505 506 4.444838 ACGAGTAATGGCGCCGCA 62.445 61.111 23.90 5.15 0.00 5.69
506 507 3.925238 CACGAGTAATGGCGCCGC 61.925 66.667 23.90 11.96 0.00 6.53
507 508 2.616786 TACCACGAGTAATGGCGCCG 62.617 60.000 23.90 10.41 41.31 6.46
508 509 0.874607 CTACCACGAGTAATGGCGCC 60.875 60.000 22.73 22.73 41.31 6.53
509 510 0.874607 CCTACCACGAGTAATGGCGC 60.875 60.000 0.00 0.00 41.31 6.53
510 511 0.458669 ACCTACCACGAGTAATGGCG 59.541 55.000 0.00 0.00 41.31 5.69
511 512 1.479323 TCACCTACCACGAGTAATGGC 59.521 52.381 0.00 0.00 41.31 4.40
512 513 2.100916 CCTCACCTACCACGAGTAATGG 59.899 54.545 0.00 0.00 43.43 3.16
513 514 2.481449 GCCTCACCTACCACGAGTAATG 60.481 54.545 0.00 0.00 0.00 1.90
514 515 1.755380 GCCTCACCTACCACGAGTAAT 59.245 52.381 0.00 0.00 0.00 1.89
515 516 1.180029 GCCTCACCTACCACGAGTAA 58.820 55.000 0.00 0.00 0.00 2.24
516 517 1.028330 CGCCTCACCTACCACGAGTA 61.028 60.000 0.00 0.00 0.00 2.59
517 518 2.341101 CGCCTCACCTACCACGAGT 61.341 63.158 0.00 0.00 0.00 4.18
518 519 2.490217 CGCCTCACCTACCACGAG 59.510 66.667 0.00 0.00 0.00 4.18
519 520 3.066190 CCGCCTCACCTACCACGA 61.066 66.667 0.00 0.00 0.00 4.35
520 521 4.143333 CCCGCCTCACCTACCACG 62.143 72.222 0.00 0.00 0.00 4.94
521 522 3.001406 ACCCGCCTCACCTACCAC 61.001 66.667 0.00 0.00 0.00 4.16
522 523 3.000819 CACCCGCCTCACCTACCA 61.001 66.667 0.00 0.00 0.00 3.25
523 524 3.782443 CCACCCGCCTCACCTACC 61.782 72.222 0.00 0.00 0.00 3.18
524 525 1.673808 CTACCACCCGCCTCACCTAC 61.674 65.000 0.00 0.00 0.00 3.18
525 526 1.380785 CTACCACCCGCCTCACCTA 60.381 63.158 0.00 0.00 0.00 3.08
526 527 2.683933 CTACCACCCGCCTCACCT 60.684 66.667 0.00 0.00 0.00 4.00
527 528 3.782443 CCTACCACCCGCCTCACC 61.782 72.222 0.00 0.00 0.00 4.02
528 529 4.468689 GCCTACCACCCGCCTCAC 62.469 72.222 0.00 0.00 0.00 3.51
534 535 4.910585 GATGGCGCCTACCACCCG 62.911 72.222 29.70 0.00 44.17 5.28
535 536 3.792736 TGATGGCGCCTACCACCC 61.793 66.667 29.70 8.95 44.17 4.61
536 537 2.513897 GTGATGGCGCCTACCACC 60.514 66.667 29.70 10.38 44.17 4.61
537 538 2.890474 CGTGATGGCGCCTACCAC 60.890 66.667 29.70 27.18 44.17 4.16
538 539 4.155733 CCGTGATGGCGCCTACCA 62.156 66.667 29.70 19.12 45.82 3.25
547 548 2.390599 CCGTGACTTGCCGTGATGG 61.391 63.158 0.00 0.00 42.50 3.51
548 549 1.626654 GACCGTGACTTGCCGTGATG 61.627 60.000 0.00 0.00 0.00 3.07
549 550 1.374252 GACCGTGACTTGCCGTGAT 60.374 57.895 0.00 0.00 0.00 3.06
550 551 2.023414 AAGACCGTGACTTGCCGTGA 62.023 55.000 0.00 0.00 0.00 4.35
551 552 1.557443 GAAGACCGTGACTTGCCGTG 61.557 60.000 0.00 0.00 0.00 4.94
552 553 1.300697 GAAGACCGTGACTTGCCGT 60.301 57.895 0.00 0.00 0.00 5.68
553 554 0.600255 AAGAAGACCGTGACTTGCCG 60.600 55.000 0.00 0.00 0.00 5.69
554 555 1.149148 GAAGAAGACCGTGACTTGCC 58.851 55.000 0.00 0.00 0.00 4.52
555 556 0.784778 CGAAGAAGACCGTGACTTGC 59.215 55.000 0.00 0.00 0.00 4.01
556 557 1.419374 CCGAAGAAGACCGTGACTTG 58.581 55.000 0.00 0.00 0.00 3.16
557 558 0.319641 GCCGAAGAAGACCGTGACTT 60.320 55.000 0.00 0.00 0.00 3.01
558 559 1.179814 AGCCGAAGAAGACCGTGACT 61.180 55.000 0.00 0.00 0.00 3.41
559 560 0.524862 TAGCCGAAGAAGACCGTGAC 59.475 55.000 0.00 0.00 0.00 3.67
560 561 0.809385 CTAGCCGAAGAAGACCGTGA 59.191 55.000 0.00 0.00 0.00 4.35
561 562 0.802607 GCTAGCCGAAGAAGACCGTG 60.803 60.000 2.29 0.00 0.00 4.94
562 563 0.966370 AGCTAGCCGAAGAAGACCGT 60.966 55.000 12.13 0.00 0.00 4.83
563 564 1.022735 TAGCTAGCCGAAGAAGACCG 58.977 55.000 12.13 0.00 0.00 4.79
564 565 3.521947 TTTAGCTAGCCGAAGAAGACC 57.478 47.619 12.13 0.00 0.00 3.85
565 566 5.224135 CCTATTTAGCTAGCCGAAGAAGAC 58.776 45.833 12.13 0.00 0.00 3.01
566 567 4.281182 CCCTATTTAGCTAGCCGAAGAAGA 59.719 45.833 12.13 0.00 0.00 2.87
567 568 4.561105 CCCTATTTAGCTAGCCGAAGAAG 58.439 47.826 12.13 8.16 0.00 2.85
568 569 3.244112 GCCCTATTTAGCTAGCCGAAGAA 60.244 47.826 12.13 0.00 0.00 2.52
569 570 2.299297 GCCCTATTTAGCTAGCCGAAGA 59.701 50.000 12.13 2.93 0.00 2.87
570 571 2.689646 GCCCTATTTAGCTAGCCGAAG 58.310 52.381 12.13 2.21 0.00 3.79
571 572 1.000506 CGCCCTATTTAGCTAGCCGAA 59.999 52.381 12.13 6.98 0.00 4.30
572 573 0.601558 CGCCCTATTTAGCTAGCCGA 59.398 55.000 12.13 0.00 0.00 5.54
573 574 0.601558 TCGCCCTATTTAGCTAGCCG 59.398 55.000 12.13 4.42 0.00 5.52
578 579 3.553096 CGAATCAGTCGCCCTATTTAGCT 60.553 47.826 0.00 0.00 44.14 3.32
636 637 2.530497 AAGCTCGCGCGTGTTTTCA 61.530 52.632 30.98 7.39 42.32 2.69
654 655 4.451150 GTCCACGGAGATGGCGCA 62.451 66.667 10.83 0.00 39.85 6.09
692 693 1.742768 GCTCGAGTGATGTAGGGGG 59.257 63.158 15.13 0.00 0.00 5.40
698 704 4.320910 TCGAGGCTCGAGTGATGT 57.679 55.556 33.80 0.00 44.82 3.06
710 716 0.179073 ACCATTTCCAGCGATCGAGG 60.179 55.000 21.57 19.38 0.00 4.63
715 721 2.355756 CGAATCAACCATTTCCAGCGAT 59.644 45.455 0.00 0.00 0.00 4.58
726 732 1.033574 AAAAACGGCCGAATCAACCA 58.966 45.000 35.90 0.00 0.00 3.67
743 749 5.353123 GCAATTATCTGTCAGACCCGTTAAA 59.647 40.000 4.21 0.00 0.00 1.52
744 750 4.873827 GCAATTATCTGTCAGACCCGTTAA 59.126 41.667 4.21 0.00 0.00 2.01
747 753 2.501723 AGCAATTATCTGTCAGACCCGT 59.498 45.455 4.21 0.00 0.00 5.28
756 762 7.485913 CGCATGAAACTTAAAGCAATTATCTGT 59.514 33.333 0.00 0.00 0.00 3.41
761 767 6.260870 TCCGCATGAAACTTAAAGCAATTA 57.739 33.333 0.00 0.00 0.00 1.40
796 802 8.723942 AGATTATTTGGTTGTCTGATCTGTAC 57.276 34.615 0.00 0.00 0.00 2.90
866 872 1.133253 CAGGAAGCAATGACGCGTG 59.867 57.895 20.70 2.37 36.85 5.34
868 874 1.741401 TCCAGGAAGCAATGACGCG 60.741 57.895 3.53 3.53 36.85 6.01
869 875 1.648467 GGTCCAGGAAGCAATGACGC 61.648 60.000 0.00 0.00 0.00 5.19
871 877 1.457346 CTGGTCCAGGAAGCAATGAC 58.543 55.000 11.46 0.00 0.00 3.06
872 878 0.322816 GCTGGTCCAGGAAGCAATGA 60.323 55.000 20.72 0.00 36.91 2.57
873 879 1.651240 CGCTGGTCCAGGAAGCAATG 61.651 60.000 20.72 0.00 36.73 2.82
874 880 1.377725 CGCTGGTCCAGGAAGCAAT 60.378 57.895 20.72 0.00 36.73 3.56
875 881 2.032528 CGCTGGTCCAGGAAGCAA 59.967 61.111 20.72 0.00 36.73 3.91
994 1023 2.503061 CTCTGGCTCCATGGGACG 59.497 66.667 13.02 1.91 0.00 4.79
1003 1032 1.451028 GGTGATGTGGCTCTGGCTC 60.451 63.158 0.00 0.00 38.73 4.70
1004 1033 2.673523 GGTGATGTGGCTCTGGCT 59.326 61.111 0.00 0.00 38.73 4.75
1005 1034 2.439156 GGGTGATGTGGCTCTGGC 60.439 66.667 0.00 0.00 37.82 4.85
1006 1035 1.222936 GAGGGTGATGTGGCTCTGG 59.777 63.158 0.00 0.00 0.00 3.86
1007 1036 1.153489 CGAGGGTGATGTGGCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
1008 1037 2.362369 CCGAGGGTGATGTGGCTCT 61.362 63.158 0.00 0.00 0.00 4.09
1215 1244 4.290622 AAGCTGTGGGGCTGGTGG 62.291 66.667 0.00 0.00 42.24 4.61
1217 1246 3.971702 GGAAGCTGTGGGGCTGGT 61.972 66.667 0.00 0.00 42.24 4.00
1218 1247 4.748144 GGGAAGCTGTGGGGCTGG 62.748 72.222 0.00 0.00 42.24 4.85
1220 1249 2.865183 ATAGGGGAAGCTGTGGGGCT 62.865 60.000 0.00 0.00 45.30 5.19
1261 1290 0.108804 GCATCTTGAGGACGACGGAA 60.109 55.000 0.00 0.00 0.00 4.30
1456 1485 1.267574 GCACATCCCTGTCCCTCTGA 61.268 60.000 0.00 0.00 31.62 3.27
1479 1508 0.036010 CACCCGAGCAGGAATGTTCT 60.036 55.000 0.00 0.00 45.00 3.01
1622 1653 1.182667 AGCACATTGTGAGCATGCAT 58.817 45.000 21.98 4.75 36.40 3.96
1634 1665 1.636148 AGCATTCCACCAAGCACATT 58.364 45.000 0.00 0.00 0.00 2.71
1850 1882 2.033299 ACCAAACGTCAGAACAAGCATG 59.967 45.455 0.00 0.00 0.00 4.06
1910 1942 4.878397 CCACTTCCTAATAAGCTGAACCAG 59.122 45.833 0.00 0.00 34.12 4.00
1912 1944 4.844884 ACCACTTCCTAATAAGCTGAACC 58.155 43.478 0.00 0.00 0.00 3.62
1915 1947 5.755409 TGAACCACTTCCTAATAAGCTGA 57.245 39.130 0.00 0.00 0.00 4.26
1927 1959 8.021396 GGTTTTACATGTAAGATGAACCACTTC 58.979 37.037 28.97 12.87 34.63 3.01
1941 1973 6.070424 CCAGTAAGAGGGAGGTTTTACATGTA 60.070 42.308 0.08 0.08 0.00 2.29
1952 1984 0.471617 CATGGCCAGTAAGAGGGAGG 59.528 60.000 13.05 0.00 0.00 4.30
2046 2078 7.721842 TGCTACTACTAGCTCACAAATATCTCT 59.278 37.037 0.00 0.00 45.20 3.10
2087 2119 5.959583 TTTGGTTGGGTGGAGTTAAAAAT 57.040 34.783 0.00 0.00 0.00 1.82
2195 2227 8.657074 TTAAACATTGATTTCCGACTATCGAT 57.343 30.769 2.16 2.16 43.74 3.59
2253 2285 6.655078 AGTGACAGCTTGGTGAAAATTTAT 57.345 33.333 6.83 0.00 0.00 1.40
2272 2304 5.826601 TGTATCTGCACAAAAACAAGTGA 57.173 34.783 0.00 0.00 37.97 3.41
2275 2307 5.809562 TGGTTTGTATCTGCACAAAAACAAG 59.190 36.000 3.19 0.00 46.81 3.16
2392 2424 8.296713 ACACATGCTGTTTGTAAGTTAATAAGG 58.703 33.333 0.00 0.00 0.00 2.69
2393 2425 9.117145 CACACATGCTGTTTGTAAGTTAATAAG 57.883 33.333 0.00 0.00 0.00 1.73
2466 2499 4.757149 GTGCTAAATTTCTGAGACACCAGT 59.243 41.667 0.00 0.00 35.71 4.00
2467 2500 4.756642 TGTGCTAAATTTCTGAGACACCAG 59.243 41.667 0.00 0.00 35.55 4.00
2468 2501 4.713553 TGTGCTAAATTTCTGAGACACCA 58.286 39.130 0.00 0.00 0.00 4.17
2470 2503 7.020010 CAGATTGTGCTAAATTTCTGAGACAC 58.980 38.462 0.00 1.27 0.00 3.67
2471 2504 6.936335 TCAGATTGTGCTAAATTTCTGAGACA 59.064 34.615 0.00 0.00 0.00 3.41
2472 2505 7.369803 TCAGATTGTGCTAAATTTCTGAGAC 57.630 36.000 0.00 0.00 0.00 3.36
2473 2506 8.571461 AATCAGATTGTGCTAAATTTCTGAGA 57.429 30.769 7.91 0.00 36.59 3.27
2485 2525 7.334421 ACGAGTACAAAATAATCAGATTGTGCT 59.666 33.333 5.85 5.15 46.57 4.40
2535 2584 0.392729 ATCAGCCAAGAGAGCACTGC 60.393 55.000 0.00 0.00 0.00 4.40
2544 2593 3.706086 TCAGTACTATGCATCAGCCAAGA 59.294 43.478 0.19 0.00 41.13 3.02
2570 2619 7.661968 TGCTAGATATCTTGTATCCAGACAAC 58.338 38.462 11.25 0.00 34.40 3.32
2573 2622 6.152661 AGCTGCTAGATATCTTGTATCCAGAC 59.847 42.308 11.25 7.78 0.00 3.51
2597 2646 8.101654 ACCGATAGCACTATTAAACTAGAGAG 57.898 38.462 0.00 0.00 0.00 3.20
2630 2679 7.721286 TCTTTCTCTCTCAGTTTTCATGTTC 57.279 36.000 0.00 0.00 0.00 3.18
2664 2713 1.996798 TTCCAGAACCAGAGACTCGT 58.003 50.000 0.00 0.00 0.00 4.18
2665 2714 2.757868 AGATTCCAGAACCAGAGACTCG 59.242 50.000 0.00 0.00 0.00 4.18
2667 2716 5.337788 ACTAAGATTCCAGAACCAGAGACT 58.662 41.667 0.00 0.00 0.00 3.24
2674 2723 8.732746 TTAAGCATAACTAAGATTCCAGAACC 57.267 34.615 0.00 0.00 0.00 3.62
2695 2745 8.076714 TCGCACTATGAATCTGCTAAATTAAG 57.923 34.615 0.00 0.00 0.00 1.85
2700 2750 5.175127 TGTTCGCACTATGAATCTGCTAAA 58.825 37.500 0.00 0.00 0.00 1.85
2719 2769 1.098050 AATGCCAGCGAAGGATGTTC 58.902 50.000 0.00 0.00 0.00 3.18
2724 2774 2.418368 AATGTAATGCCAGCGAAGGA 57.582 45.000 0.00 0.00 0.00 3.36
2863 2919 4.923415 TGGAGGAAGAAAAAGAAGATCCC 58.077 43.478 0.00 0.00 0.00 3.85
2974 3030 9.719355 TCTAGTGCTGTTCTTTTGTTCATATAA 57.281 29.630 0.00 0.00 0.00 0.98
3008 3064 9.869757 ACATACCAAAACATTCTTATTTAAGCC 57.130 29.630 0.00 0.00 33.40 4.35
3082 3138 1.747355 CCATGCTGGAAGTCAATGGAC 59.253 52.381 0.00 0.00 40.96 4.02
3083 3139 1.956636 GCCATGCTGGAAGTCAATGGA 60.957 52.381 4.21 0.00 40.96 3.41
3090 3146 1.378250 GCAGAGCCATGCTGGAAGT 60.378 57.895 6.40 0.00 40.96 3.01
3104 3160 9.856488 CATAACACTAGTTTCTACTAAAGCAGA 57.144 33.333 0.00 0.00 39.15 4.26
3105 3161 9.088512 CCATAACACTAGTTTCTACTAAAGCAG 57.911 37.037 0.00 0.00 39.15 4.24
3106 3162 7.548075 GCCATAACACTAGTTTCTACTAAAGCA 59.452 37.037 0.00 0.00 39.15 3.91
3107 3163 7.254017 CGCCATAACACTAGTTTCTACTAAAGC 60.254 40.741 0.00 0.00 39.15 3.51
3108 3164 7.254017 GCGCCATAACACTAGTTTCTACTAAAG 60.254 40.741 0.00 0.00 39.15 1.85
3109 3165 6.532657 GCGCCATAACACTAGTTTCTACTAAA 59.467 38.462 0.00 0.00 39.15 1.85
3112 3168 4.159879 AGCGCCATAACACTAGTTTCTACT 59.840 41.667 2.29 0.00 39.15 2.57
3113 3169 4.267928 CAGCGCCATAACACTAGTTTCTAC 59.732 45.833 2.29 0.00 39.15 2.59
3114 3170 4.430007 CAGCGCCATAACACTAGTTTCTA 58.570 43.478 2.29 0.00 39.15 2.10
3115 3171 3.262420 CAGCGCCATAACACTAGTTTCT 58.738 45.455 2.29 0.00 39.15 2.52
3116 3172 2.223044 GCAGCGCCATAACACTAGTTTC 60.223 50.000 2.29 0.00 39.15 2.78
3117 3173 1.737793 GCAGCGCCATAACACTAGTTT 59.262 47.619 2.29 0.00 39.15 2.66
3118 3174 1.066143 AGCAGCGCCATAACACTAGTT 60.066 47.619 2.29 0.00 41.74 2.24
3119 3175 0.537188 AGCAGCGCCATAACACTAGT 59.463 50.000 2.29 0.00 0.00 2.57
3120 3176 2.034685 TCTAGCAGCGCCATAACACTAG 59.965 50.000 2.29 5.25 0.00 2.57
3121 3177 2.028876 TCTAGCAGCGCCATAACACTA 58.971 47.619 2.29 0.00 0.00 2.74
3122 3178 0.824109 TCTAGCAGCGCCATAACACT 59.176 50.000 2.29 0.00 0.00 3.55
3304 3362 9.155785 CTTAGGGTTAATTAGAGATAAGGGTCA 57.844 37.037 0.00 0.00 0.00 4.02
3597 3673 1.540166 CATGGGATCCAGGTGGCAT 59.460 57.895 15.23 3.47 36.75 4.40
3598 3674 2.692824 CCATGGGATCCAGGTGGCA 61.693 63.158 15.23 0.77 36.75 4.92
3729 3805 2.356313 CACCGACAGAAGCGCACT 60.356 61.111 11.47 5.61 0.00 4.40
4200 5027 2.755876 ATCGCAGGTCAGCTCCGA 60.756 61.111 0.00 0.00 0.00 4.55
5076 8050 5.221087 GCGCTCTTTCTACCTGTTAGAGTAT 60.221 44.000 0.00 0.00 38.12 2.12
5178 8152 8.727910 ACTTTTGCATACATAGATATCAGCATG 58.272 33.333 5.32 7.79 37.54 4.06
5195 8169 8.229253 TGCTTGATCTATATGAACTTTTGCAT 57.771 30.769 0.00 0.00 0.00 3.96
5271 8245 6.899393 AATTTCAAGTAAGGTTCTGCATGA 57.101 33.333 0.00 0.00 0.00 3.07
5363 8353 0.541998 AGTCGGTGGTGTCCTGATCA 60.542 55.000 0.00 0.00 0.00 2.92
5417 8407 1.002134 CGATTTGTCAGGGCCAGGT 60.002 57.895 6.18 0.00 0.00 4.00
5424 8414 4.728882 GCAGCTTACATTCGATTTGTCAGG 60.729 45.833 4.92 0.14 0.00 3.86
5426 8416 4.002982 AGCAGCTTACATTCGATTTGTCA 58.997 39.130 4.92 0.00 0.00 3.58
5482 8472 9.382244 GGCGATGTGTTATTCTAATCAAATAAC 57.618 33.333 10.37 10.37 44.37 1.89
5484 8474 8.669946 TGGCGATGTGTTATTCTAATCAAATA 57.330 30.769 0.00 0.00 0.00 1.40
5519 8509 8.372459 TGTCATTAAAGACAAGGCGGTATATAT 58.628 33.333 10.94 0.00 44.92 0.86
5528 8518 5.731686 GCATAGCTGTCATTAAAGACAAGGC 60.732 44.000 13.96 13.98 46.90 4.35
5594 8584 5.418840 GTGGAGTACATTGATGTTTCCCATT 59.581 40.000 17.48 0.00 40.08 3.16
5618 8608 6.183360 GGACGATCTTAATGTTTGGAAAGAGG 60.183 42.308 0.00 0.00 31.90 3.69
5624 8614 4.469945 AGGAGGACGATCTTAATGTTTGGA 59.530 41.667 0.00 0.00 0.00 3.53
5711 8701 2.204291 TGGGGGCCCTCAACTGAT 60.204 61.111 26.54 0.00 36.94 2.90
5745 8735 0.460284 CTAGTCGAAGGTGCGCCAAT 60.460 55.000 20.59 6.71 37.19 3.16
5777 8767 0.465642 CTAAATTCCACCGGAGCCCC 60.466 60.000 9.46 0.00 31.21 5.80
5843 8833 5.860182 CGAGAAAATGCATTGAAACATCAGT 59.140 36.000 13.82 0.00 0.00 3.41
5912 8902 3.480470 CTGGTCCTCATCAACTGTGTTT 58.520 45.455 0.00 0.00 0.00 2.83
5917 8907 2.867109 AACCTGGTCCTCATCAACTG 57.133 50.000 0.00 0.00 0.00 3.16
6034 9024 3.452755 TCGACGTGCTAATCAATCCAT 57.547 42.857 0.00 0.00 0.00 3.41
6036 9026 2.927477 TGTTCGACGTGCTAATCAATCC 59.073 45.455 0.00 0.00 0.00 3.01
6050 9040 2.599082 GTCCTCATCAACGATGTTCGAC 59.401 50.000 3.62 5.00 43.74 4.20
6073 9063 2.622064 ATCTGAAGCGACCATAACCC 57.378 50.000 0.00 0.00 0.00 4.11
6080 9070 1.205893 AGGTCAGAATCTGAAGCGACC 59.794 52.381 15.28 11.86 42.46 4.79
6081 9071 2.094494 TCAGGTCAGAATCTGAAGCGAC 60.094 50.000 15.28 2.47 42.46 5.19
6139 9129 3.570939 CGATAGCTAAAACGTTCTGCC 57.429 47.619 0.00 0.00 0.00 4.85
6314 9304 2.363306 AGATTTTGACAGGCACACCA 57.637 45.000 0.00 0.00 39.06 4.17
6338 9328 9.825972 CACTGTATTTTCACAACCTATTAACAG 57.174 33.333 0.00 0.00 36.43 3.16
6385 9375 7.540745 GTGTAAAAAGAGAAGTTTGCTTGAACA 59.459 33.333 0.00 0.00 34.61 3.18
6442 9432 5.371526 TGGATGGAGCTCTGAAATGAATAC 58.628 41.667 14.64 0.00 0.00 1.89
6524 10712 3.643792 CCTAGACCCAGGATCCTAACAAG 59.356 52.174 15.67 7.42 38.00 3.16
6559 10747 9.368674 GTGATCTGAATATCTGATACCATCAAG 57.631 37.037 0.00 1.58 39.11 3.02
6585 10773 2.022195 CATGCTCCTGACCAAATCCTG 58.978 52.381 0.00 0.00 0.00 3.86
6717 10905 8.356657 TGTCCAAAACAAATTTCGAATGATACT 58.643 29.630 0.00 0.00 34.03 2.12
6718 10906 8.514136 TGTCCAAAACAAATTTCGAATGATAC 57.486 30.769 0.00 0.00 34.03 2.24
6719 10907 7.812191 CCTGTCCAAAACAAATTTCGAATGATA 59.188 33.333 0.00 0.00 37.45 2.15
6720 10908 6.646240 CCTGTCCAAAACAAATTTCGAATGAT 59.354 34.615 0.00 0.00 37.45 2.45
6721 10909 5.982516 CCTGTCCAAAACAAATTTCGAATGA 59.017 36.000 0.00 0.00 37.45 2.57
6722 10910 5.177327 CCCTGTCCAAAACAAATTTCGAATG 59.823 40.000 0.00 0.00 37.45 2.67
6826 11020 4.399004 TGTTGCATAGGTTTGCTTTTGT 57.601 36.364 0.00 0.00 43.18 2.83
6827 11021 5.697633 AGATTGTTGCATAGGTTTGCTTTTG 59.302 36.000 0.00 0.00 43.18 2.44
6917 11688 7.047460 AGGGATAGCTAAAATGCAAGAAATG 57.953 36.000 0.00 0.00 34.99 2.32
6924 11695 9.640952 AAATAAACTAGGGATAGCTAAAATGCA 57.359 29.630 0.00 0.00 34.99 3.96
6937 11708 8.648693 GCACTATAAGAGGAAATAAACTAGGGA 58.351 37.037 0.00 0.00 0.00 4.20
6939 11710 9.832445 TTGCACTATAAGAGGAAATAAACTAGG 57.168 33.333 0.00 0.00 0.00 3.02
6943 11714 9.774742 CAGTTTGCACTATAAGAGGAAATAAAC 57.225 33.333 0.00 0.00 30.36 2.01
6944 11715 8.956426 CCAGTTTGCACTATAAGAGGAAATAAA 58.044 33.333 0.00 0.00 30.36 1.40
6961 11732 1.380403 CGTTGGTGGTCCAGTTTGCA 61.380 55.000 0.00 0.00 45.22 4.08
6962 11733 1.358759 CGTTGGTGGTCCAGTTTGC 59.641 57.895 0.00 0.00 45.22 3.68
6963 11734 1.358759 GCGTTGGTGGTCCAGTTTG 59.641 57.895 0.00 0.00 45.22 2.93
6964 11735 0.467290 ATGCGTTGGTGGTCCAGTTT 60.467 50.000 0.00 0.00 45.22 2.66
6965 11736 1.150536 ATGCGTTGGTGGTCCAGTT 59.849 52.632 0.00 0.00 45.22 3.16
6966 11737 1.600636 CATGCGTTGGTGGTCCAGT 60.601 57.895 0.00 0.00 45.22 4.00
6967 11738 1.600636 ACATGCGTTGGTGGTCCAG 60.601 57.895 0.00 0.00 45.22 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.