Multiple sequence alignment - TraesCS1A01G231700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G231700 chr1A 100.000 2636 0 0 1 2636 405093734 405091099 0.000000e+00 4868.0
1 TraesCS1A01G231700 chr1A 86.063 1435 128 44 693 2086 399826725 399825322 0.000000e+00 1476.0
2 TraesCS1A01G231700 chr1D 92.262 2171 86 44 510 2636 318721894 318724026 0.000000e+00 3003.0
3 TraesCS1A01G231700 chr1D 86.243 1432 134 36 693 2086 318498469 318497063 0.000000e+00 1495.0
4 TraesCS1A01G231700 chr1D 87.302 441 53 3 2 442 402303026 402303463 3.920000e-138 501.0
5 TraesCS1A01G231700 chr1B 93.232 1965 86 16 712 2636 431032634 431034591 0.000000e+00 2848.0
6 TraesCS1A01G231700 chr1B 85.824 1432 137 39 694 2086 430618456 430617052 0.000000e+00 1459.0
7 TraesCS1A01G231700 chr1B 88.940 217 18 5 511 722 431030644 431030859 2.010000e-66 263.0
8 TraesCS1A01G231700 chr2D 88.670 406 42 4 3 407 471643265 471642863 2.360000e-135 492.0
9 TraesCS1A01G231700 chr2D 85.439 467 62 4 2 464 392529352 392529816 5.100000e-132 481.0
10 TraesCS1A01G231700 chr6D 86.207 464 51 11 1 464 158820215 158819765 8.480000e-135 490.0
11 TraesCS1A01G231700 chr6D 85.837 466 57 7 3 464 362778752 362779212 1.100000e-133 486.0
12 TraesCS1A01G231700 chr6B 85.256 468 55 12 3 463 136455100 136455560 1.100000e-128 470.0
13 TraesCS1A01G231700 chr5D 84.989 473 56 10 3 464 316678933 316679401 1.430000e-127 466.0
14 TraesCS1A01G231700 chr5D 84.835 455 60 6 1 452 29902747 29902299 1.440000e-122 449.0
15 TraesCS1A01G231700 chr5D 100.000 28 0 0 2201 2228 167120948 167120975 5.000000e-03 52.8
16 TraesCS1A01G231700 chr7A 84.534 472 61 11 3 468 114093255 114093720 8.600000e-125 457.0
17 TraesCS1A01G231700 chr7D 92.857 42 0 3 2196 2234 25295199 25295240 1.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G231700 chr1A 405091099 405093734 2635 True 4868.0 4868 100.000 1 2636 1 chr1A.!!$R2 2635
1 TraesCS1A01G231700 chr1A 399825322 399826725 1403 True 1476.0 1476 86.063 693 2086 1 chr1A.!!$R1 1393
2 TraesCS1A01G231700 chr1D 318721894 318724026 2132 False 3003.0 3003 92.262 510 2636 1 chr1D.!!$F1 2126
3 TraesCS1A01G231700 chr1D 318497063 318498469 1406 True 1495.0 1495 86.243 693 2086 1 chr1D.!!$R1 1393
4 TraesCS1A01G231700 chr1B 431030644 431034591 3947 False 1555.5 2848 91.086 511 2636 2 chr1B.!!$F1 2125
5 TraesCS1A01G231700 chr1B 430617052 430618456 1404 True 1459.0 1459 85.824 694 2086 1 chr1B.!!$R1 1392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.036765 CCCTTTGGACCGACGATGAA 60.037 55.0 0.0 0.0 0.00 2.57 F
424 425 0.106419 GACAGGGTCGGGAGAGATCT 60.106 60.0 0.0 0.0 41.26 2.75 F
433 434 0.266152 GGGAGAGATCTGGAGGGGAA 59.734 60.0 0.0 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1046 2858 1.065102 CGCTTGATGCAAGAAGATGGG 59.935 52.381 11.08 0.0 43.42 4.00 R
1283 3095 1.139095 GACGAGTCGGTGGATGACC 59.861 63.158 18.30 0.0 42.07 4.02 R
1729 3543 1.899814 AGCTAAGGGACATCGACACAA 59.100 47.619 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.821216 GAAAACAATGGAGCGAGGGA 58.179 50.000 0.00 0.00 0.00 4.20
20 21 1.468914 GAAAACAATGGAGCGAGGGAC 59.531 52.381 0.00 0.00 0.00 4.46
21 22 0.400213 AAACAATGGAGCGAGGGACA 59.600 50.000 0.00 0.00 0.00 4.02
22 23 0.321653 AACAATGGAGCGAGGGACAC 60.322 55.000 0.00 0.00 0.00 3.67
23 24 1.296392 CAATGGAGCGAGGGACACA 59.704 57.895 0.00 0.00 0.00 3.72
24 25 1.021390 CAATGGAGCGAGGGACACAC 61.021 60.000 0.00 0.00 0.00 3.82
25 26 2.185310 AATGGAGCGAGGGACACACC 62.185 60.000 0.00 0.00 38.08 4.16
34 35 2.746277 GGACACACCCACCATCGC 60.746 66.667 0.00 0.00 0.00 4.58
35 36 2.746277 GACACACCCACCATCGCC 60.746 66.667 0.00 0.00 0.00 5.54
36 37 3.249189 ACACACCCACCATCGCCT 61.249 61.111 0.00 0.00 0.00 5.52
37 38 2.436646 CACACCCACCATCGCCTC 60.437 66.667 0.00 0.00 0.00 4.70
38 39 3.717294 ACACCCACCATCGCCTCC 61.717 66.667 0.00 0.00 0.00 4.30
39 40 3.716195 CACCCACCATCGCCTCCA 61.716 66.667 0.00 0.00 0.00 3.86
40 41 2.933287 ACCCACCATCGCCTCCAA 60.933 61.111 0.00 0.00 0.00 3.53
41 42 2.438434 CCCACCATCGCCTCCAAC 60.438 66.667 0.00 0.00 0.00 3.77
42 43 2.819595 CCACCATCGCCTCCAACG 60.820 66.667 0.00 0.00 0.00 4.10
43 44 2.264480 CACCATCGCCTCCAACGA 59.736 61.111 0.00 0.00 44.75 3.85
44 45 1.811266 CACCATCGCCTCCAACGAG 60.811 63.158 0.00 0.00 43.74 4.18
45 46 2.892425 CCATCGCCTCCAACGAGC 60.892 66.667 0.00 0.00 43.74 5.03
46 47 2.125552 CATCGCCTCCAACGAGCA 60.126 61.111 0.00 0.00 43.74 4.26
47 48 1.741401 CATCGCCTCCAACGAGCAA 60.741 57.895 0.00 0.00 43.74 3.91
48 49 1.003839 ATCGCCTCCAACGAGCAAA 60.004 52.632 0.00 0.00 43.74 3.68
49 50 1.298859 ATCGCCTCCAACGAGCAAAC 61.299 55.000 0.00 0.00 43.74 2.93
50 51 2.954611 GCCTCCAACGAGCAAACC 59.045 61.111 0.00 0.00 34.49 3.27
51 52 2.966309 GCCTCCAACGAGCAAACCG 61.966 63.158 0.00 0.00 34.49 4.44
52 53 1.301401 CCTCCAACGAGCAAACCGA 60.301 57.895 0.00 0.00 34.49 4.69
53 54 1.566018 CCTCCAACGAGCAAACCGAC 61.566 60.000 0.00 0.00 34.49 4.79
54 55 0.878523 CTCCAACGAGCAAACCGACA 60.879 55.000 0.00 0.00 0.00 4.35
55 56 1.155424 TCCAACGAGCAAACCGACAC 61.155 55.000 0.00 0.00 0.00 3.67
56 57 1.278637 CAACGAGCAAACCGACACC 59.721 57.895 0.00 0.00 0.00 4.16
57 58 1.890510 AACGAGCAAACCGACACCC 60.891 57.895 0.00 0.00 0.00 4.61
58 59 2.280524 CGAGCAAACCGACACCCA 60.281 61.111 0.00 0.00 0.00 4.51
59 60 2.604174 CGAGCAAACCGACACCCAC 61.604 63.158 0.00 0.00 0.00 4.61
60 61 2.590575 AGCAAACCGACACCCACG 60.591 61.111 0.00 0.00 0.00 4.94
82 83 4.758251 CCGCAGACGATGGTGGCA 62.758 66.667 0.00 0.00 43.93 4.92
83 84 2.512286 CGCAGACGATGGTGGCAT 60.512 61.111 0.00 0.00 43.93 4.40
84 85 2.528743 CGCAGACGATGGTGGCATC 61.529 63.158 0.00 0.00 43.93 3.91
85 86 2.182842 GCAGACGATGGTGGCATCC 61.183 63.158 0.00 0.00 0.00 3.51
86 87 1.524002 CAGACGATGGTGGCATCCT 59.476 57.895 0.00 0.00 0.00 3.24
87 88 0.531532 CAGACGATGGTGGCATCCTC 60.532 60.000 0.00 0.00 0.00 3.71
88 89 0.977627 AGACGATGGTGGCATCCTCA 60.978 55.000 3.93 0.00 0.00 3.86
89 90 0.811616 GACGATGGTGGCATCCTCAC 60.812 60.000 3.93 0.00 34.61 3.51
93 94 2.044946 GGTGGCATCCTCACCCAC 60.045 66.667 2.07 0.54 46.58 4.61
94 95 2.606587 GGTGGCATCCTCACCCACT 61.607 63.158 8.71 0.00 46.58 4.00
95 96 1.078143 GTGGCATCCTCACCCACTC 60.078 63.158 0.00 0.00 44.32 3.51
96 97 2.300967 TGGCATCCTCACCCACTCC 61.301 63.158 0.00 0.00 0.00 3.85
97 98 2.300967 GGCATCCTCACCCACTCCA 61.301 63.158 0.00 0.00 0.00 3.86
98 99 1.222936 GCATCCTCACCCACTCCAG 59.777 63.158 0.00 0.00 0.00 3.86
99 100 1.557269 GCATCCTCACCCACTCCAGT 61.557 60.000 0.00 0.00 0.00 4.00
100 101 1.866015 CATCCTCACCCACTCCAGTA 58.134 55.000 0.00 0.00 0.00 2.74
101 102 1.759445 CATCCTCACCCACTCCAGTAG 59.241 57.143 0.00 0.00 0.00 2.57
102 103 0.614979 TCCTCACCCACTCCAGTAGC 60.615 60.000 0.00 0.00 0.00 3.58
103 104 0.616111 CCTCACCCACTCCAGTAGCT 60.616 60.000 0.00 0.00 0.00 3.32
104 105 1.342076 CCTCACCCACTCCAGTAGCTA 60.342 57.143 0.00 0.00 0.00 3.32
105 106 2.028130 CTCACCCACTCCAGTAGCTAG 58.972 57.143 0.00 0.00 0.00 3.42
106 107 1.115467 CACCCACTCCAGTAGCTAGG 58.885 60.000 0.00 0.00 0.00 3.02
107 108 0.688087 ACCCACTCCAGTAGCTAGGC 60.688 60.000 0.00 0.00 0.00 3.93
108 109 1.403687 CCCACTCCAGTAGCTAGGCC 61.404 65.000 0.00 0.00 0.00 5.19
109 110 0.687757 CCACTCCAGTAGCTAGGCCA 60.688 60.000 5.01 0.00 0.00 5.36
110 111 1.418334 CACTCCAGTAGCTAGGCCAT 58.582 55.000 5.01 0.00 0.00 4.40
111 112 1.342819 CACTCCAGTAGCTAGGCCATC 59.657 57.143 5.01 0.00 0.00 3.51
112 113 1.062886 ACTCCAGTAGCTAGGCCATCA 60.063 52.381 5.01 0.00 0.00 3.07
113 114 2.255406 CTCCAGTAGCTAGGCCATCAT 58.745 52.381 5.01 0.00 0.00 2.45
114 115 2.233431 CTCCAGTAGCTAGGCCATCATC 59.767 54.545 5.01 0.00 0.00 2.92
115 116 2.158249 TCCAGTAGCTAGGCCATCATCT 60.158 50.000 5.01 0.00 0.00 2.90
116 117 2.233431 CCAGTAGCTAGGCCATCATCTC 59.767 54.545 5.01 0.00 0.00 2.75
117 118 2.233431 CAGTAGCTAGGCCATCATCTCC 59.767 54.545 5.01 0.00 0.00 3.71
118 119 2.111613 AGTAGCTAGGCCATCATCTCCT 59.888 50.000 5.01 0.00 0.00 3.69
119 120 2.115337 AGCTAGGCCATCATCTCCTT 57.885 50.000 5.01 0.00 0.00 3.36
120 121 1.977129 AGCTAGGCCATCATCTCCTTC 59.023 52.381 5.01 0.00 0.00 3.46
121 122 1.977129 GCTAGGCCATCATCTCCTTCT 59.023 52.381 5.01 0.00 0.00 2.85
122 123 2.028203 GCTAGGCCATCATCTCCTTCTC 60.028 54.545 5.01 0.00 0.00 2.87
123 124 1.433121 AGGCCATCATCTCCTTCTCC 58.567 55.000 5.01 0.00 0.00 3.71
124 125 1.135094 GGCCATCATCTCCTTCTCCA 58.865 55.000 0.00 0.00 0.00 3.86
125 126 1.202746 GGCCATCATCTCCTTCTCCAC 60.203 57.143 0.00 0.00 0.00 4.02
126 127 1.767681 GCCATCATCTCCTTCTCCACT 59.232 52.381 0.00 0.00 0.00 4.00
127 128 2.172293 GCCATCATCTCCTTCTCCACTT 59.828 50.000 0.00 0.00 0.00 3.16
128 129 3.806380 CCATCATCTCCTTCTCCACTTG 58.194 50.000 0.00 0.00 0.00 3.16
129 130 3.453717 CCATCATCTCCTTCTCCACTTGA 59.546 47.826 0.00 0.00 0.00 3.02
130 131 4.102838 CCATCATCTCCTTCTCCACTTGAT 59.897 45.833 0.00 0.00 0.00 2.57
131 132 5.397672 CCATCATCTCCTTCTCCACTTGATT 60.398 44.000 0.00 0.00 0.00 2.57
132 133 5.350504 TCATCTCCTTCTCCACTTGATTC 57.649 43.478 0.00 0.00 0.00 2.52
133 134 3.876274 TCTCCTTCTCCACTTGATTCG 57.124 47.619 0.00 0.00 0.00 3.34
134 135 2.093973 TCTCCTTCTCCACTTGATTCGC 60.094 50.000 0.00 0.00 0.00 4.70
135 136 1.066143 TCCTTCTCCACTTGATTCGCC 60.066 52.381 0.00 0.00 0.00 5.54
136 137 1.002366 CTTCTCCACTTGATTCGCCG 58.998 55.000 0.00 0.00 0.00 6.46
137 138 0.320374 TTCTCCACTTGATTCGCCGT 59.680 50.000 0.00 0.00 0.00 5.68
138 139 0.108804 TCTCCACTTGATTCGCCGTC 60.109 55.000 0.00 0.00 0.00 4.79
139 140 1.413767 CTCCACTTGATTCGCCGTCG 61.414 60.000 0.00 0.00 0.00 5.12
140 141 2.452813 CCACTTGATTCGCCGTCGG 61.453 63.158 6.99 6.99 36.13 4.79
141 142 2.125673 ACTTGATTCGCCGTCGGG 60.126 61.111 14.38 3.27 36.13 5.14
142 143 2.183300 CTTGATTCGCCGTCGGGA 59.817 61.111 14.38 5.87 36.13 5.14
143 144 1.447140 CTTGATTCGCCGTCGGGAA 60.447 57.895 14.38 14.67 44.17 3.97
144 145 1.421410 CTTGATTCGCCGTCGGGAAG 61.421 60.000 14.38 0.00 43.40 3.46
145 146 3.262686 GATTCGCCGTCGGGAAGC 61.263 66.667 14.38 13.38 43.40 3.86
146 147 4.832608 ATTCGCCGTCGGGAAGCC 62.833 66.667 14.38 0.00 43.40 4.35
166 167 2.356313 CGCGAGGCAACACTCACT 60.356 61.111 0.00 0.00 37.34 3.41
167 168 2.661566 CGCGAGGCAACACTCACTG 61.662 63.158 0.00 0.00 37.34 3.66
168 169 1.300931 GCGAGGCAACACTCACTGA 60.301 57.895 0.00 0.00 37.34 3.41
169 170 1.560860 GCGAGGCAACACTCACTGAC 61.561 60.000 0.00 0.00 37.34 3.51
170 171 0.249447 CGAGGCAACACTCACTGACA 60.249 55.000 0.00 0.00 37.34 3.58
171 172 1.806247 CGAGGCAACACTCACTGACAA 60.806 52.381 0.00 0.00 37.34 3.18
172 173 1.869767 GAGGCAACACTCACTGACAAG 59.130 52.381 0.00 0.00 37.44 3.16
173 174 1.486310 AGGCAACACTCACTGACAAGA 59.514 47.619 0.00 0.00 41.41 3.02
174 175 2.105477 AGGCAACACTCACTGACAAGAT 59.895 45.455 0.00 0.00 41.41 2.40
175 176 2.481952 GGCAACACTCACTGACAAGATC 59.518 50.000 0.00 0.00 0.00 2.75
176 177 2.481952 GCAACACTCACTGACAAGATCC 59.518 50.000 0.00 0.00 0.00 3.36
177 178 3.070018 CAACACTCACTGACAAGATCCC 58.930 50.000 0.00 0.00 0.00 3.85
178 179 2.614259 ACACTCACTGACAAGATCCCT 58.386 47.619 0.00 0.00 0.00 4.20
179 180 2.975489 ACACTCACTGACAAGATCCCTT 59.025 45.455 0.00 0.00 0.00 3.95
180 181 3.392616 ACACTCACTGACAAGATCCCTTT 59.607 43.478 0.00 0.00 0.00 3.11
181 182 3.750130 CACTCACTGACAAGATCCCTTTG 59.250 47.826 0.00 0.00 0.00 2.77
182 183 3.244700 ACTCACTGACAAGATCCCTTTGG 60.245 47.826 0.00 0.00 0.00 3.28
184 185 3.077359 CACTGACAAGATCCCTTTGGAC 58.923 50.000 0.00 0.00 45.58 4.02
185 186 2.040412 ACTGACAAGATCCCTTTGGACC 59.960 50.000 0.00 0.00 45.58 4.46
186 187 1.003118 TGACAAGATCCCTTTGGACCG 59.997 52.381 0.00 0.00 45.58 4.79
187 188 1.278127 GACAAGATCCCTTTGGACCGA 59.722 52.381 0.00 0.00 45.58 4.69
188 189 1.003233 ACAAGATCCCTTTGGACCGAC 59.997 52.381 0.00 0.00 45.58 4.79
189 190 0.249398 AAGATCCCTTTGGACCGACG 59.751 55.000 0.00 0.00 45.58 5.12
190 191 0.613853 AGATCCCTTTGGACCGACGA 60.614 55.000 0.00 0.00 45.58 4.20
191 192 0.464452 GATCCCTTTGGACCGACGAT 59.536 55.000 0.00 0.00 45.58 3.73
192 193 0.178068 ATCCCTTTGGACCGACGATG 59.822 55.000 0.00 0.00 45.58 3.84
193 194 0.901114 TCCCTTTGGACCGACGATGA 60.901 55.000 0.00 0.00 35.03 2.92
194 195 0.036765 CCCTTTGGACCGACGATGAA 60.037 55.000 0.00 0.00 0.00 2.57
195 196 1.359848 CCTTTGGACCGACGATGAAG 58.640 55.000 0.00 0.00 0.00 3.02
196 197 1.067142 CCTTTGGACCGACGATGAAGA 60.067 52.381 0.00 0.00 0.00 2.87
197 198 1.993370 CTTTGGACCGACGATGAAGAC 59.007 52.381 0.00 0.00 0.00 3.01
198 199 0.963225 TTGGACCGACGATGAAGACA 59.037 50.000 0.00 0.00 0.00 3.41
199 200 0.963225 TGGACCGACGATGAAGACAA 59.037 50.000 0.00 0.00 0.00 3.18
200 201 1.336517 TGGACCGACGATGAAGACAAC 60.337 52.381 0.00 0.00 0.00 3.32
201 202 1.347320 GACCGACGATGAAGACAACC 58.653 55.000 0.00 0.00 0.00 3.77
202 203 0.677288 ACCGACGATGAAGACAACCA 59.323 50.000 0.00 0.00 0.00 3.67
203 204 1.069513 ACCGACGATGAAGACAACCAA 59.930 47.619 0.00 0.00 0.00 3.67
204 205 2.139917 CCGACGATGAAGACAACCAAA 58.860 47.619 0.00 0.00 0.00 3.28
205 206 2.157668 CCGACGATGAAGACAACCAAAG 59.842 50.000 0.00 0.00 0.00 2.77
206 207 2.157668 CGACGATGAAGACAACCAAAGG 59.842 50.000 0.00 0.00 0.00 3.11
207 208 3.139077 GACGATGAAGACAACCAAAGGT 58.861 45.455 0.00 0.00 37.65 3.50
208 209 4.312443 GACGATGAAGACAACCAAAGGTA 58.688 43.478 0.00 0.00 33.12 3.08
209 210 4.315803 ACGATGAAGACAACCAAAGGTAG 58.684 43.478 0.00 0.00 33.12 3.18
210 211 4.039973 ACGATGAAGACAACCAAAGGTAGA 59.960 41.667 0.00 0.00 33.12 2.59
211 212 4.627467 CGATGAAGACAACCAAAGGTAGAG 59.373 45.833 0.00 0.00 33.12 2.43
212 213 4.351874 TGAAGACAACCAAAGGTAGAGG 57.648 45.455 0.00 0.00 33.12 3.69
213 214 3.971305 TGAAGACAACCAAAGGTAGAGGA 59.029 43.478 0.00 0.00 33.12 3.71
214 215 4.040461 TGAAGACAACCAAAGGTAGAGGAG 59.960 45.833 0.00 0.00 33.12 3.69
215 216 2.907042 AGACAACCAAAGGTAGAGGAGG 59.093 50.000 0.00 0.00 33.12 4.30
216 217 2.638363 GACAACCAAAGGTAGAGGAGGT 59.362 50.000 0.00 0.00 33.12 3.85
217 218 2.638363 ACAACCAAAGGTAGAGGAGGTC 59.362 50.000 0.00 0.00 33.12 3.85
218 219 2.637872 CAACCAAAGGTAGAGGAGGTCA 59.362 50.000 0.00 0.00 33.12 4.02
219 220 2.258109 ACCAAAGGTAGAGGAGGTCAC 58.742 52.381 0.00 0.00 32.11 3.67
220 221 2.257207 CCAAAGGTAGAGGAGGTCACA 58.743 52.381 0.00 0.00 0.00 3.58
221 222 2.840651 CCAAAGGTAGAGGAGGTCACAT 59.159 50.000 0.00 0.00 0.00 3.21
222 223 3.264450 CCAAAGGTAGAGGAGGTCACATT 59.736 47.826 0.00 0.00 0.00 2.71
223 224 4.256920 CAAAGGTAGAGGAGGTCACATTG 58.743 47.826 0.00 0.00 0.00 2.82
224 225 3.191888 AGGTAGAGGAGGTCACATTGT 57.808 47.619 0.00 0.00 0.00 2.71
225 226 3.521727 AGGTAGAGGAGGTCACATTGTT 58.478 45.455 0.00 0.00 0.00 2.83
226 227 3.261897 AGGTAGAGGAGGTCACATTGTTG 59.738 47.826 0.00 0.00 0.00 3.33
227 228 2.191128 AGAGGAGGTCACATTGTTGC 57.809 50.000 0.00 0.00 0.00 4.17
228 229 0.798776 GAGGAGGTCACATTGTTGCG 59.201 55.000 0.00 0.00 0.00 4.85
229 230 0.108585 AGGAGGTCACATTGTTGCGT 59.891 50.000 0.00 0.00 0.00 5.24
230 231 0.951558 GGAGGTCACATTGTTGCGTT 59.048 50.000 0.00 0.00 0.00 4.84
231 232 2.147958 GGAGGTCACATTGTTGCGTTA 58.852 47.619 0.00 0.00 0.00 3.18
232 233 2.095919 GGAGGTCACATTGTTGCGTTAC 60.096 50.000 0.00 0.00 0.00 2.50
233 234 1.877443 AGGTCACATTGTTGCGTTACC 59.123 47.619 0.00 0.00 0.00 2.85
234 235 1.604755 GGTCACATTGTTGCGTTACCA 59.395 47.619 0.00 0.00 0.00 3.25
235 236 2.350388 GGTCACATTGTTGCGTTACCAG 60.350 50.000 0.00 0.00 0.00 4.00
236 237 2.289547 GTCACATTGTTGCGTTACCAGT 59.710 45.455 0.00 0.00 0.00 4.00
237 238 2.289274 TCACATTGTTGCGTTACCAGTG 59.711 45.455 0.00 0.00 0.00 3.66
238 239 1.001815 ACATTGTTGCGTTACCAGTGC 60.002 47.619 0.00 0.00 0.00 4.40
239 240 0.596082 ATTGTTGCGTTACCAGTGCC 59.404 50.000 0.00 0.00 0.00 5.01
240 241 0.748367 TTGTTGCGTTACCAGTGCCA 60.748 50.000 0.00 0.00 0.00 4.92
241 242 0.536233 TGTTGCGTTACCAGTGCCAT 60.536 50.000 0.00 0.00 0.00 4.40
242 243 0.109781 GTTGCGTTACCAGTGCCATG 60.110 55.000 0.00 0.00 0.00 3.66
243 244 1.240641 TTGCGTTACCAGTGCCATGG 61.241 55.000 7.63 7.63 46.47 3.66
244 245 3.051392 GCGTTACCAGTGCCATGGC 62.051 63.158 30.54 30.54 44.80 4.40
245 246 2.406616 CGTTACCAGTGCCATGGCC 61.407 63.158 33.44 23.56 44.80 5.36
246 247 1.304052 GTTACCAGTGCCATGGCCA 60.304 57.895 33.44 18.73 44.80 5.36
247 248 1.304052 TTACCAGTGCCATGGCCAC 60.304 57.895 33.44 27.77 44.80 5.01
248 249 2.074113 TTACCAGTGCCATGGCCACA 62.074 55.000 33.44 13.18 44.80 4.17
249 250 2.762969 TACCAGTGCCATGGCCACAC 62.763 60.000 33.44 24.21 44.80 3.82
250 251 2.598099 CAGTGCCATGGCCACACA 60.598 61.111 33.44 12.33 41.09 3.72
251 252 2.598394 AGTGCCATGGCCACACAC 60.598 61.111 33.44 23.47 41.09 3.82
252 253 2.911509 GTGCCATGGCCACACACA 60.912 61.111 33.44 10.68 41.09 3.72
253 254 2.911509 TGCCATGGCCACACACAC 60.912 61.111 33.44 3.62 41.09 3.82
254 255 4.041917 GCCATGGCCACACACACG 62.042 66.667 27.24 0.00 34.56 4.49
255 256 2.594303 CCATGGCCACACACACGT 60.594 61.111 8.16 0.00 0.00 4.49
256 257 2.192861 CCATGGCCACACACACGTT 61.193 57.895 8.16 0.00 0.00 3.99
257 258 1.008652 CATGGCCACACACACGTTG 60.009 57.895 8.16 0.00 0.00 4.10
258 259 1.453015 ATGGCCACACACACGTTGT 60.453 52.632 8.16 0.00 39.97 3.32
259 260 1.444119 ATGGCCACACACACGTTGTC 61.444 55.000 8.16 0.00 35.67 3.18
260 261 2.713154 GCCACACACACGTTGTCC 59.287 61.111 0.00 0.00 35.67 4.02
261 262 2.830285 GCCACACACACGTTGTCCC 61.830 63.158 0.00 0.00 35.67 4.46
262 263 2.530497 CCACACACACGTTGTCCCG 61.530 63.158 0.00 0.00 35.67 5.14
263 264 1.519676 CACACACACGTTGTCCCGA 60.520 57.895 0.00 0.00 35.67 5.14
264 265 1.227147 ACACACACGTTGTCCCGAG 60.227 57.895 0.00 0.00 35.67 4.63
265 266 1.954146 CACACACGTTGTCCCGAGG 60.954 63.158 0.00 0.00 35.67 4.63
266 267 3.041940 CACACGTTGTCCCGAGGC 61.042 66.667 0.00 0.00 0.00 4.70
267 268 4.657824 ACACGTTGTCCCGAGGCG 62.658 66.667 0.00 0.00 0.00 5.52
278 279 4.441695 CGAGGCGCCTGCTCAAGA 62.442 66.667 38.41 0.00 42.25 3.02
279 280 2.817396 GAGGCGCCTGCTCAAGAC 60.817 66.667 38.41 13.51 42.25 3.01
280 281 4.400961 AGGCGCCTGCTCAAGACC 62.401 66.667 32.33 0.00 42.25 3.85
282 283 4.704833 GCGCCTGCTCAAGACCCA 62.705 66.667 0.00 0.00 38.39 4.51
283 284 2.743928 CGCCTGCTCAAGACCCAC 60.744 66.667 0.00 0.00 0.00 4.61
284 285 2.360475 GCCTGCTCAAGACCCACC 60.360 66.667 0.00 0.00 0.00 4.61
285 286 2.046892 CCTGCTCAAGACCCACCG 60.047 66.667 0.00 0.00 0.00 4.94
286 287 2.743718 CTGCTCAAGACCCACCGT 59.256 61.111 0.00 0.00 0.00 4.83
287 288 1.374758 CTGCTCAAGACCCACCGTC 60.375 63.158 0.00 0.00 42.32 4.79
288 289 2.099652 CTGCTCAAGACCCACCGTCA 62.100 60.000 0.00 0.00 44.66 4.35
289 290 1.668151 GCTCAAGACCCACCGTCAC 60.668 63.158 0.00 0.00 44.66 3.67
290 291 1.745890 CTCAAGACCCACCGTCACA 59.254 57.895 0.00 0.00 44.66 3.58
291 292 0.319900 CTCAAGACCCACCGTCACAG 60.320 60.000 0.00 0.00 44.66 3.66
292 293 1.961277 CAAGACCCACCGTCACAGC 60.961 63.158 0.00 0.00 44.66 4.40
293 294 2.140792 AAGACCCACCGTCACAGCT 61.141 57.895 0.00 0.00 44.66 4.24
294 295 0.830444 AAGACCCACCGTCACAGCTA 60.830 55.000 0.00 0.00 44.66 3.32
295 296 1.080025 GACCCACCGTCACAGCTAC 60.080 63.158 0.00 0.00 41.54 3.58
296 297 2.126071 CCCACCGTCACAGCTACG 60.126 66.667 0.40 0.40 40.01 3.51
297 298 2.809601 CCACCGTCACAGCTACGC 60.810 66.667 1.90 0.00 39.00 4.42
298 299 2.809601 CACCGTCACAGCTACGCC 60.810 66.667 1.90 0.00 39.00 5.68
299 300 2.989824 ACCGTCACAGCTACGCCT 60.990 61.111 1.90 0.00 39.00 5.52
300 301 2.202623 CCGTCACAGCTACGCCTC 60.203 66.667 1.90 0.00 39.00 4.70
301 302 2.202623 CGTCACAGCTACGCCTCC 60.203 66.667 0.00 0.00 33.04 4.30
302 303 2.970639 GTCACAGCTACGCCTCCA 59.029 61.111 0.00 0.00 0.00 3.86
303 304 1.292223 GTCACAGCTACGCCTCCAA 59.708 57.895 0.00 0.00 0.00 3.53
304 305 0.737715 GTCACAGCTACGCCTCCAAG 60.738 60.000 0.00 0.00 0.00 3.61
305 306 2.103042 CACAGCTACGCCTCCAAGC 61.103 63.158 0.00 0.00 36.48 4.01
306 307 2.512515 CAGCTACGCCTCCAAGCC 60.513 66.667 0.00 0.00 36.92 4.35
307 308 4.148825 AGCTACGCCTCCAAGCCG 62.149 66.667 0.00 0.00 36.92 5.52
376 377 4.899239 CAGCCGGGATCCAGCGAC 62.899 72.222 15.23 0.84 0.00 5.19
399 400 4.798682 GAGGGGAGGCGAAGGGGA 62.799 72.222 0.00 0.00 0.00 4.81
400 401 4.806339 AGGGGAGGCGAAGGGGAG 62.806 72.222 0.00 0.00 0.00 4.30
409 410 3.787001 GAAGGGGAGGGCGGACAG 61.787 72.222 0.00 0.00 0.00 3.51
420 421 3.141488 CGGACAGGGTCGGGAGAG 61.141 72.222 0.00 0.00 41.26 3.20
421 422 2.359404 GGACAGGGTCGGGAGAGA 59.641 66.667 0.00 0.00 41.26 3.10
422 423 1.075896 GGACAGGGTCGGGAGAGAT 60.076 63.158 0.00 0.00 41.26 2.75
423 424 1.110518 GGACAGGGTCGGGAGAGATC 61.111 65.000 0.00 0.00 41.26 2.75
424 425 0.106419 GACAGGGTCGGGAGAGATCT 60.106 60.000 0.00 0.00 41.26 2.75
425 426 0.396417 ACAGGGTCGGGAGAGATCTG 60.396 60.000 0.00 0.00 41.26 2.90
426 427 1.112315 CAGGGTCGGGAGAGATCTGG 61.112 65.000 0.00 0.00 41.26 3.86
427 428 1.230497 GGGTCGGGAGAGATCTGGA 59.770 63.158 0.00 0.00 41.26 3.86
428 429 0.825840 GGGTCGGGAGAGATCTGGAG 60.826 65.000 0.00 0.00 41.26 3.86
429 430 0.825840 GGTCGGGAGAGATCTGGAGG 60.826 65.000 0.00 0.00 41.26 4.30
430 431 0.825840 GTCGGGAGAGATCTGGAGGG 60.826 65.000 0.00 0.00 41.26 4.30
431 432 1.532794 CGGGAGAGATCTGGAGGGG 60.533 68.421 0.00 0.00 0.00 4.79
432 433 1.942271 GGGAGAGATCTGGAGGGGA 59.058 63.158 0.00 0.00 0.00 4.81
433 434 0.266152 GGGAGAGATCTGGAGGGGAA 59.734 60.000 0.00 0.00 0.00 3.97
434 435 1.715785 GGAGAGATCTGGAGGGGAAG 58.284 60.000 0.00 0.00 0.00 3.46
435 436 1.715785 GAGAGATCTGGAGGGGAAGG 58.284 60.000 0.00 0.00 0.00 3.46
436 437 0.267356 AGAGATCTGGAGGGGAAGGG 59.733 60.000 0.00 0.00 0.00 3.95
437 438 0.766288 GAGATCTGGAGGGGAAGGGG 60.766 65.000 0.00 0.00 0.00 4.79
438 439 1.772156 GATCTGGAGGGGAAGGGGG 60.772 68.421 0.00 0.00 0.00 5.40
439 440 2.271493 GATCTGGAGGGGAAGGGGGA 62.271 65.000 0.00 0.00 0.00 4.81
440 441 2.277126 ATCTGGAGGGGAAGGGGGAG 62.277 65.000 0.00 0.00 0.00 4.30
441 442 4.038804 TGGAGGGGAAGGGGGAGG 62.039 72.222 0.00 0.00 0.00 4.30
443 444 4.760220 GAGGGGAAGGGGGAGGCA 62.760 72.222 0.00 0.00 0.00 4.75
444 445 4.767892 AGGGGAAGGGGGAGGCAG 62.768 72.222 0.00 0.00 0.00 4.85
445 446 4.760220 GGGGAAGGGGGAGGCAGA 62.760 72.222 0.00 0.00 0.00 4.26
446 447 3.093172 GGGAAGGGGGAGGCAGAG 61.093 72.222 0.00 0.00 0.00 3.35
447 448 3.093172 GGAAGGGGGAGGCAGAGG 61.093 72.222 0.00 0.00 0.00 3.69
448 449 3.093172 GAAGGGGGAGGCAGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
449 450 4.767892 AAGGGGGAGGCAGAGGGG 62.768 72.222 0.00 0.00 0.00 4.79
452 453 4.095400 GGGGAGGCAGAGGGGAGA 62.095 72.222 0.00 0.00 0.00 3.71
453 454 2.445654 GGGAGGCAGAGGGGAGAG 60.446 72.222 0.00 0.00 0.00 3.20
454 455 3.160748 GGAGGCAGAGGGGAGAGC 61.161 72.222 0.00 0.00 0.00 4.09
455 456 3.535962 GAGGCAGAGGGGAGAGCG 61.536 72.222 0.00 0.00 0.00 5.03
458 459 3.844090 GCAGAGGGGAGAGCGGAC 61.844 72.222 0.00 0.00 0.00 4.79
459 460 3.522731 CAGAGGGGAGAGCGGACG 61.523 72.222 0.00 0.00 0.00 4.79
460 461 4.824515 AGAGGGGAGAGCGGACGG 62.825 72.222 0.00 0.00 0.00 4.79
464 465 4.816984 GGGAGAGCGGACGGGAGA 62.817 72.222 0.00 0.00 0.00 3.71
465 466 3.213402 GGAGAGCGGACGGGAGAG 61.213 72.222 0.00 0.00 0.00 3.20
466 467 3.213402 GAGAGCGGACGGGAGAGG 61.213 72.222 0.00 0.00 0.00 3.69
467 468 3.700831 GAGAGCGGACGGGAGAGGA 62.701 68.421 0.00 0.00 0.00 3.71
468 469 2.754658 GAGCGGACGGGAGAGGAA 60.755 66.667 0.00 0.00 0.00 3.36
469 470 2.283676 AGCGGACGGGAGAGGAAA 60.284 61.111 0.00 0.00 0.00 3.13
470 471 2.184579 GCGGACGGGAGAGGAAAG 59.815 66.667 0.00 0.00 0.00 2.62
471 472 2.348888 GCGGACGGGAGAGGAAAGA 61.349 63.158 0.00 0.00 0.00 2.52
472 473 1.677637 GCGGACGGGAGAGGAAAGAT 61.678 60.000 0.00 0.00 0.00 2.40
473 474 0.386113 CGGACGGGAGAGGAAAGATC 59.614 60.000 0.00 0.00 0.00 2.75
474 475 0.386113 GGACGGGAGAGGAAAGATCG 59.614 60.000 0.00 0.00 0.00 3.69
475 476 0.386113 GACGGGAGAGGAAAGATCGG 59.614 60.000 0.00 0.00 0.00 4.18
476 477 1.043673 ACGGGAGAGGAAAGATCGGG 61.044 60.000 0.00 0.00 0.00 5.14
477 478 0.755698 CGGGAGAGGAAAGATCGGGA 60.756 60.000 0.00 0.00 0.00 5.14
478 479 1.044611 GGGAGAGGAAAGATCGGGAG 58.955 60.000 0.00 0.00 0.00 4.30
479 480 1.411787 GGGAGAGGAAAGATCGGGAGA 60.412 57.143 0.00 0.00 46.90 3.71
480 481 1.960689 GGAGAGGAAAGATCGGGAGAG 59.039 57.143 0.00 0.00 45.48 3.20
481 482 1.960689 GAGAGGAAAGATCGGGAGAGG 59.039 57.143 0.00 0.00 45.48 3.69
482 483 1.571457 AGAGGAAAGATCGGGAGAGGA 59.429 52.381 0.00 0.00 45.48 3.71
483 484 1.960689 GAGGAAAGATCGGGAGAGGAG 59.039 57.143 0.00 0.00 45.48 3.69
484 485 1.571457 AGGAAAGATCGGGAGAGGAGA 59.429 52.381 0.00 0.00 45.48 3.71
485 486 1.960689 GGAAAGATCGGGAGAGGAGAG 59.039 57.143 0.00 0.00 45.48 3.20
486 487 1.960689 GAAAGATCGGGAGAGGAGAGG 59.039 57.143 0.00 0.00 45.48 3.69
487 488 1.227249 AAGATCGGGAGAGGAGAGGA 58.773 55.000 0.00 0.00 45.48 3.71
488 489 0.771127 AGATCGGGAGAGGAGAGGAG 59.229 60.000 0.00 0.00 45.48 3.69
489 490 0.768622 GATCGGGAGAGGAGAGGAGA 59.231 60.000 0.00 0.00 45.48 3.71
490 491 0.771127 ATCGGGAGAGGAGAGGAGAG 59.229 60.000 0.00 0.00 45.48 3.20
491 492 1.150536 CGGGAGAGGAGAGGAGAGG 59.849 68.421 0.00 0.00 0.00 3.69
492 493 1.541672 GGGAGAGGAGAGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
493 494 1.541672 GGAGAGGAGAGGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79
494 495 0.996762 GGAGAGGAGAGGAGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
495 496 0.478507 GAGAGGAGAGGAGAGGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
496 497 0.998945 AGAGGAGAGGAGAGGGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
497 498 2.018086 AGGAGAGGAGAGGGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
498 499 2.612251 GAGAGGAGAGGGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
499 500 2.015726 GAGAGGAGAGGGGAGGGGA 61.016 68.421 0.00 0.00 0.00 4.81
500 501 2.018086 AGAGGAGAGGGGAGGGGAG 61.018 68.421 0.00 0.00 0.00 4.30
501 502 3.039526 AGGAGAGGGGAGGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
502 503 4.890306 GGAGAGGGGAGGGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
503 504 4.095400 GAGAGGGGAGGGGAGGCA 62.095 72.222 0.00 0.00 0.00 4.75
504 505 4.101077 AGAGGGGAGGGGAGGCAG 62.101 72.222 0.00 0.00 0.00 4.85
505 506 4.095400 GAGGGGAGGGGAGGCAGA 62.095 72.222 0.00 0.00 0.00 4.26
506 507 4.101077 AGGGGAGGGGAGGCAGAG 62.101 72.222 0.00 0.00 0.00 3.35
508 509 4.423209 GGGAGGGGAGGCAGAGGT 62.423 72.222 0.00 0.00 0.00 3.85
509 510 2.285743 GGAGGGGAGGCAGAGGTT 60.286 66.667 0.00 0.00 0.00 3.50
510 511 1.925972 GGAGGGGAGGCAGAGGTTT 60.926 63.158 0.00 0.00 0.00 3.27
511 512 1.501654 GGAGGGGAGGCAGAGGTTTT 61.502 60.000 0.00 0.00 0.00 2.43
512 513 0.405973 GAGGGGAGGCAGAGGTTTTT 59.594 55.000 0.00 0.00 0.00 1.94
543 544 2.324860 TCAGTCTGCATTGAACGTACG 58.675 47.619 15.01 15.01 0.00 3.67
617 618 1.292061 TATAATGCACCCGTCGTTGC 58.708 50.000 8.71 8.71 0.00 4.17
638 639 3.584834 CACGATGATACAGTGAACACCA 58.415 45.455 0.00 0.00 38.06 4.17
643 644 7.651704 CACGATGATACAGTGAACACCAATATA 59.348 37.037 0.00 0.00 38.06 0.86
653 654 8.820933 CAGTGAACACCAATATATGTAAGACAG 58.179 37.037 1.11 0.00 0.00 3.51
670 672 6.762702 AAGACAGTAGAGTAAACCTAGCTC 57.237 41.667 0.00 0.00 0.00 4.09
677 679 3.376546 AGAGTAAACCTAGCTCGTAACGG 59.623 47.826 0.00 0.00 34.69 4.44
738 2529 4.591321 ACCCATCACCATTTGTACATCT 57.409 40.909 0.00 0.00 0.00 2.90
789 2584 3.117625 CCTCCACCTTCTTATAAACCCCC 60.118 52.174 0.00 0.00 0.00 5.40
790 2585 3.526019 CTCCACCTTCTTATAAACCCCCA 59.474 47.826 0.00 0.00 0.00 4.96
860 2655 6.759272 TCTCAACTCATACAGTTTAGTTGCT 58.241 36.000 13.64 0.00 43.38 3.91
861 2656 7.892609 TCTCAACTCATACAGTTTAGTTGCTA 58.107 34.615 13.64 5.56 43.38 3.49
862 2657 7.813148 TCTCAACTCATACAGTTTAGTTGCTAC 59.187 37.037 13.64 0.00 43.38 3.58
880 2678 5.734720 TGCTACTATCTTTCCCTGTTCTTG 58.265 41.667 0.00 0.00 0.00 3.02
939 2737 6.106673 AGATCCGAACGACAAAGTTGAATAT 58.893 36.000 0.00 0.00 34.00 1.28
947 2745 5.700832 ACGACAAAGTTGAATATTCTGCTGA 59.299 36.000 16.24 0.00 0.00 4.26
962 2763 3.118000 TCTGCTGAGGAAGGACGTCTATA 60.118 47.826 16.46 0.00 34.87 1.31
1045 2857 1.347707 TGCTGTTCCTCTCGTCCAAAT 59.652 47.619 0.00 0.00 0.00 2.32
1046 2858 2.003301 GCTGTTCCTCTCGTCCAAATC 58.997 52.381 0.00 0.00 0.00 2.17
1290 3102 1.476007 CCGATGAGGAGGGGTCATCC 61.476 65.000 7.35 0.00 45.15 3.51
1686 3500 1.598701 GCTACCAAAGCCAAGCCAGG 61.599 60.000 0.00 0.00 46.25 4.45
1737 3553 0.038435 TATTCCGGCGTTTGTGTCGA 60.038 50.000 6.01 0.00 0.00 4.20
1824 3641 8.964150 GTTTTGTTGTGTTCTTGTTATCCATAC 58.036 33.333 0.00 0.00 0.00 2.39
1935 3758 9.807649 ATTGGAATTGTAAGATTAGAAACATGC 57.192 29.630 0.00 0.00 0.00 4.06
2118 3975 4.375406 AGGGACGGTACCTCATGG 57.625 61.111 5.94 0.00 31.01 3.66
2120 3977 0.252558 AGGGACGGTACCTCATGGTT 60.253 55.000 5.94 0.00 46.05 3.67
2121 3978 0.177373 GGGACGGTACCTCATGGTTC 59.823 60.000 10.90 0.00 46.05 3.62
2122 3979 1.192428 GGACGGTACCTCATGGTTCT 58.808 55.000 10.90 0.00 46.05 3.01
2124 3981 2.100418 GGACGGTACCTCATGGTTCTAC 59.900 54.545 10.90 0.00 46.05 2.59
2183 4048 4.697352 AGAAGTCCAATTGAACCGATGAAG 59.303 41.667 7.12 0.00 0.00 3.02
2445 4319 7.559533 TGCATGATACTTGGTTAATGGTTATGT 59.440 33.333 0.00 0.00 0.00 2.29
2486 4360 6.815142 GGTCTTAAGGAACGAGCATACTAAAA 59.185 38.462 1.85 0.00 0.00 1.52
2529 4403 3.545703 ACAAGAAACAGTCAAGTGGAGG 58.454 45.455 0.00 0.00 0.00 4.30
2531 4405 3.933861 AGAAACAGTCAAGTGGAGGTT 57.066 42.857 0.00 0.00 0.00 3.50
2560 4434 7.275999 CGGAGTAGTAGGAAACTTCTTTCATTC 59.724 40.741 0.00 0.00 43.67 2.67
2632 4507 4.549458 CAAACAAGCACCATAGAAACTGG 58.451 43.478 0.00 0.00 39.80 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.468914 GTCCCTCGCTCCATTGTTTTC 59.531 52.381 0.00 0.00 0.00 2.29
1 2 1.202879 TGTCCCTCGCTCCATTGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
2 3 0.400213 TGTCCCTCGCTCCATTGTTT 59.600 50.000 0.00 0.00 0.00 2.83
3 4 0.321653 GTGTCCCTCGCTCCATTGTT 60.322 55.000 0.00 0.00 0.00 2.83
4 5 1.296715 GTGTCCCTCGCTCCATTGT 59.703 57.895 0.00 0.00 0.00 2.71
6 7 1.296715 GTGTGTCCCTCGCTCCATT 59.703 57.895 0.00 0.00 0.00 3.16
7 8 2.660064 GGTGTGTCCCTCGCTCCAT 61.660 63.158 0.00 0.00 39.25 3.41
8 9 3.311110 GGTGTGTCCCTCGCTCCA 61.311 66.667 0.00 0.00 39.25 3.86
17 18 2.746277 GCGATGGTGGGTGTGTCC 60.746 66.667 0.00 0.00 0.00 4.02
18 19 2.746277 GGCGATGGTGGGTGTGTC 60.746 66.667 0.00 0.00 0.00 3.67
19 20 3.249189 AGGCGATGGTGGGTGTGT 61.249 61.111 0.00 0.00 0.00 3.72
20 21 2.436646 GAGGCGATGGTGGGTGTG 60.437 66.667 0.00 0.00 0.00 3.82
21 22 3.717294 GGAGGCGATGGTGGGTGT 61.717 66.667 0.00 0.00 0.00 4.16
22 23 3.266686 TTGGAGGCGATGGTGGGTG 62.267 63.158 0.00 0.00 0.00 4.61
23 24 2.933287 TTGGAGGCGATGGTGGGT 60.933 61.111 0.00 0.00 0.00 4.51
24 25 2.438434 GTTGGAGGCGATGGTGGG 60.438 66.667 0.00 0.00 0.00 4.61
25 26 2.819595 CGTTGGAGGCGATGGTGG 60.820 66.667 0.00 0.00 0.00 4.61
26 27 1.811266 CTCGTTGGAGGCGATGGTG 60.811 63.158 0.00 0.00 37.74 4.17
27 28 2.579201 CTCGTTGGAGGCGATGGT 59.421 61.111 0.00 0.00 37.74 3.55
28 29 2.892425 GCTCGTTGGAGGCGATGG 60.892 66.667 0.00 0.00 40.80 3.51
29 30 1.298157 TTTGCTCGTTGGAGGCGATG 61.298 55.000 0.00 0.00 40.80 3.84
30 31 1.003839 TTTGCTCGTTGGAGGCGAT 60.004 52.632 0.00 0.00 40.80 4.58
31 32 1.959226 GTTTGCTCGTTGGAGGCGA 60.959 57.895 0.00 0.00 40.80 5.54
32 33 2.556287 GTTTGCTCGTTGGAGGCG 59.444 61.111 0.00 0.00 40.80 5.52
33 34 2.954611 GGTTTGCTCGTTGGAGGC 59.045 61.111 0.00 0.00 40.80 4.70
34 35 1.301401 TCGGTTTGCTCGTTGGAGG 60.301 57.895 0.00 0.00 40.80 4.30
35 36 0.878523 TGTCGGTTTGCTCGTTGGAG 60.879 55.000 0.00 0.00 43.46 3.86
36 37 1.144276 TGTCGGTTTGCTCGTTGGA 59.856 52.632 0.00 0.00 0.00 3.53
37 38 1.278637 GTGTCGGTTTGCTCGTTGG 59.721 57.895 0.00 0.00 0.00 3.77
38 39 1.278637 GGTGTCGGTTTGCTCGTTG 59.721 57.895 0.00 0.00 0.00 4.10
39 40 1.890510 GGGTGTCGGTTTGCTCGTT 60.891 57.895 0.00 0.00 0.00 3.85
40 41 2.280592 GGGTGTCGGTTTGCTCGT 60.281 61.111 0.00 0.00 0.00 4.18
41 42 2.280524 TGGGTGTCGGTTTGCTCG 60.281 61.111 0.00 0.00 0.00 5.03
42 43 2.604174 CGTGGGTGTCGGTTTGCTC 61.604 63.158 0.00 0.00 0.00 4.26
43 44 2.590575 CGTGGGTGTCGGTTTGCT 60.591 61.111 0.00 0.00 0.00 3.91
44 45 3.656045 CCGTGGGTGTCGGTTTGC 61.656 66.667 0.00 0.00 42.62 3.68
45 46 2.975799 CCCGTGGGTGTCGGTTTG 60.976 66.667 0.00 0.00 45.63 2.93
46 47 4.941309 GCCCGTGGGTGTCGGTTT 62.941 66.667 6.82 0.00 45.63 3.27
65 66 4.758251 TGCCACCATCGTCTGCGG 62.758 66.667 0.00 0.00 38.89 5.69
66 67 2.512286 ATGCCACCATCGTCTGCG 60.512 61.111 0.00 0.00 39.92 5.18
67 68 3.414272 GATGCCACCATCGTCTGC 58.586 61.111 0.00 0.00 38.59 4.26
77 78 1.078143 GAGTGGGTGAGGATGCCAC 60.078 63.158 0.00 0.00 0.00 5.01
78 79 2.300967 GGAGTGGGTGAGGATGCCA 61.301 63.158 0.00 0.00 0.00 4.92
79 80 2.262774 CTGGAGTGGGTGAGGATGCC 62.263 65.000 0.00 0.00 0.00 4.40
80 81 1.222936 CTGGAGTGGGTGAGGATGC 59.777 63.158 0.00 0.00 0.00 3.91
81 82 1.759445 CTACTGGAGTGGGTGAGGATG 59.241 57.143 0.00 0.00 0.00 3.51
82 83 1.967274 GCTACTGGAGTGGGTGAGGAT 60.967 57.143 0.00 0.00 0.00 3.24
83 84 0.614979 GCTACTGGAGTGGGTGAGGA 60.615 60.000 0.00 0.00 0.00 3.71
84 85 0.616111 AGCTACTGGAGTGGGTGAGG 60.616 60.000 0.00 0.00 35.92 3.86
85 86 2.028130 CTAGCTACTGGAGTGGGTGAG 58.972 57.143 5.22 0.00 37.77 3.51
86 87 1.342076 CCTAGCTACTGGAGTGGGTGA 60.342 57.143 5.22 0.00 37.77 4.02
87 88 1.115467 CCTAGCTACTGGAGTGGGTG 58.885 60.000 5.22 0.00 37.77 4.61
88 89 0.688087 GCCTAGCTACTGGAGTGGGT 60.688 60.000 3.23 0.40 40.32 4.51
89 90 1.403687 GGCCTAGCTACTGGAGTGGG 61.404 65.000 3.23 0.00 0.00 4.61
90 91 0.687757 TGGCCTAGCTACTGGAGTGG 60.688 60.000 3.32 0.00 0.00 4.00
91 92 1.342819 GATGGCCTAGCTACTGGAGTG 59.657 57.143 3.32 0.00 0.00 3.51
92 93 1.062886 TGATGGCCTAGCTACTGGAGT 60.063 52.381 3.32 0.00 0.00 3.85
93 94 1.709578 TGATGGCCTAGCTACTGGAG 58.290 55.000 3.32 0.00 0.00 3.86
94 95 2.158249 AGATGATGGCCTAGCTACTGGA 60.158 50.000 3.32 0.00 0.00 3.86
95 96 2.233431 GAGATGATGGCCTAGCTACTGG 59.767 54.545 3.32 0.00 0.00 4.00
96 97 2.233431 GGAGATGATGGCCTAGCTACTG 59.767 54.545 3.32 0.00 0.00 2.74
97 98 2.111613 AGGAGATGATGGCCTAGCTACT 59.888 50.000 3.32 1.40 0.00 2.57
98 99 2.534990 AGGAGATGATGGCCTAGCTAC 58.465 52.381 3.32 0.00 0.00 3.58
99 100 3.169099 GAAGGAGATGATGGCCTAGCTA 58.831 50.000 3.32 0.00 0.00 3.32
100 101 1.977129 GAAGGAGATGATGGCCTAGCT 59.023 52.381 3.32 0.00 0.00 3.32
101 102 1.977129 AGAAGGAGATGATGGCCTAGC 59.023 52.381 3.32 0.00 0.00 3.42
102 103 2.566724 GGAGAAGGAGATGATGGCCTAG 59.433 54.545 3.32 0.00 0.00 3.02
103 104 2.090550 TGGAGAAGGAGATGATGGCCTA 60.091 50.000 3.32 0.00 0.00 3.93
104 105 1.344803 TGGAGAAGGAGATGATGGCCT 60.345 52.381 3.32 0.00 0.00 5.19
105 106 1.135094 TGGAGAAGGAGATGATGGCC 58.865 55.000 0.00 0.00 0.00 5.36
106 107 1.767681 AGTGGAGAAGGAGATGATGGC 59.232 52.381 0.00 0.00 0.00 4.40
107 108 3.453717 TCAAGTGGAGAAGGAGATGATGG 59.546 47.826 0.00 0.00 0.00 3.51
108 109 4.750021 TCAAGTGGAGAAGGAGATGATG 57.250 45.455 0.00 0.00 0.00 3.07
109 110 5.453057 CGAATCAAGTGGAGAAGGAGATGAT 60.453 44.000 0.00 0.00 0.00 2.45
110 111 4.142071 CGAATCAAGTGGAGAAGGAGATGA 60.142 45.833 0.00 0.00 0.00 2.92
111 112 4.118410 CGAATCAAGTGGAGAAGGAGATG 58.882 47.826 0.00 0.00 0.00 2.90
112 113 3.431486 GCGAATCAAGTGGAGAAGGAGAT 60.431 47.826 0.00 0.00 0.00 2.75
113 114 2.093973 GCGAATCAAGTGGAGAAGGAGA 60.094 50.000 0.00 0.00 0.00 3.71
114 115 2.275318 GCGAATCAAGTGGAGAAGGAG 58.725 52.381 0.00 0.00 0.00 3.69
115 116 1.066143 GGCGAATCAAGTGGAGAAGGA 60.066 52.381 0.00 0.00 0.00 3.36
116 117 1.373570 GGCGAATCAAGTGGAGAAGG 58.626 55.000 0.00 0.00 0.00 3.46
117 118 1.002366 CGGCGAATCAAGTGGAGAAG 58.998 55.000 0.00 0.00 0.00 2.85
118 119 0.320374 ACGGCGAATCAAGTGGAGAA 59.680 50.000 16.62 0.00 0.00 2.87
119 120 0.108804 GACGGCGAATCAAGTGGAGA 60.109 55.000 16.62 0.00 0.00 3.71
120 121 1.413767 CGACGGCGAATCAAGTGGAG 61.414 60.000 16.62 0.00 40.82 3.86
121 122 1.445410 CGACGGCGAATCAAGTGGA 60.445 57.895 16.62 0.00 40.82 4.02
122 123 2.452813 CCGACGGCGAATCAAGTGG 61.453 63.158 15.16 0.00 40.82 4.00
123 124 2.452813 CCCGACGGCGAATCAAGTG 61.453 63.158 15.16 0.00 40.82 3.16
124 125 2.125673 CCCGACGGCGAATCAAGT 60.126 61.111 15.16 0.00 40.82 3.16
125 126 1.421410 CTTCCCGACGGCGAATCAAG 61.421 60.000 15.16 4.13 40.82 3.02
126 127 1.447140 CTTCCCGACGGCGAATCAA 60.447 57.895 15.16 0.00 40.82 2.57
127 128 2.183300 CTTCCCGACGGCGAATCA 59.817 61.111 15.16 0.00 40.82 2.57
128 129 3.262686 GCTTCCCGACGGCGAATC 61.263 66.667 15.16 5.84 40.82 2.52
129 130 4.832608 GGCTTCCCGACGGCGAAT 62.833 66.667 15.16 0.00 40.82 3.34
145 146 4.988598 AGTGTTGCCTCGCGGTGG 62.989 66.667 6.13 10.69 0.00 4.61
146 147 3.414700 GAGTGTTGCCTCGCGGTG 61.415 66.667 6.13 0.00 0.00 4.94
147 148 3.923864 TGAGTGTTGCCTCGCGGT 61.924 61.111 6.13 0.00 34.04 5.68
148 149 3.414700 GTGAGTGTTGCCTCGCGG 61.415 66.667 6.13 0.00 32.79 6.46
149 150 2.356313 AGTGAGTGTTGCCTCGCG 60.356 61.111 0.00 0.00 44.73 5.87
150 151 1.300931 TCAGTGAGTGTTGCCTCGC 60.301 57.895 0.00 0.00 41.30 5.03
151 152 0.249447 TGTCAGTGAGTGTTGCCTCG 60.249 55.000 0.00 0.00 34.04 4.63
152 153 1.869767 CTTGTCAGTGAGTGTTGCCTC 59.130 52.381 0.00 0.00 0.00 4.70
153 154 1.486310 TCTTGTCAGTGAGTGTTGCCT 59.514 47.619 0.00 0.00 0.00 4.75
154 155 1.953559 TCTTGTCAGTGAGTGTTGCC 58.046 50.000 0.00 0.00 0.00 4.52
155 156 2.481952 GGATCTTGTCAGTGAGTGTTGC 59.518 50.000 0.00 0.00 0.00 4.17
156 157 3.070018 GGGATCTTGTCAGTGAGTGTTG 58.930 50.000 0.00 0.00 0.00 3.33
157 158 2.975489 AGGGATCTTGTCAGTGAGTGTT 59.025 45.455 0.00 0.00 0.00 3.32
158 159 2.614259 AGGGATCTTGTCAGTGAGTGT 58.386 47.619 0.00 0.00 0.00 3.55
159 160 3.692257 AAGGGATCTTGTCAGTGAGTG 57.308 47.619 0.00 0.00 0.00 3.51
160 161 3.244700 CCAAAGGGATCTTGTCAGTGAGT 60.245 47.826 0.00 0.00 35.59 3.41
161 162 3.008375 TCCAAAGGGATCTTGTCAGTGAG 59.992 47.826 0.00 0.00 38.64 3.51
162 163 2.978978 TCCAAAGGGATCTTGTCAGTGA 59.021 45.455 0.00 0.00 38.64 3.41
163 164 3.423539 TCCAAAGGGATCTTGTCAGTG 57.576 47.619 0.00 0.00 38.64 3.66
174 175 0.901114 TCATCGTCGGTCCAAAGGGA 60.901 55.000 0.00 0.00 42.29 4.20
175 176 0.036765 TTCATCGTCGGTCCAAAGGG 60.037 55.000 0.00 0.00 0.00 3.95
176 177 1.067142 TCTTCATCGTCGGTCCAAAGG 60.067 52.381 0.00 0.00 0.00 3.11
177 178 1.993370 GTCTTCATCGTCGGTCCAAAG 59.007 52.381 0.00 0.00 0.00 2.77
178 179 1.341852 TGTCTTCATCGTCGGTCCAAA 59.658 47.619 0.00 0.00 0.00 3.28
179 180 0.963225 TGTCTTCATCGTCGGTCCAA 59.037 50.000 0.00 0.00 0.00 3.53
180 181 0.963225 TTGTCTTCATCGTCGGTCCA 59.037 50.000 0.00 0.00 0.00 4.02
181 182 1.347320 GTTGTCTTCATCGTCGGTCC 58.653 55.000 0.00 0.00 0.00 4.46
182 183 1.336517 TGGTTGTCTTCATCGTCGGTC 60.337 52.381 0.00 0.00 0.00 4.79
183 184 0.677288 TGGTTGTCTTCATCGTCGGT 59.323 50.000 0.00 0.00 0.00 4.69
184 185 1.790755 TTGGTTGTCTTCATCGTCGG 58.209 50.000 0.00 0.00 0.00 4.79
185 186 2.157668 CCTTTGGTTGTCTTCATCGTCG 59.842 50.000 0.00 0.00 0.00 5.12
186 187 3.139077 ACCTTTGGTTGTCTTCATCGTC 58.861 45.455 0.00 0.00 27.29 4.20
187 188 3.208747 ACCTTTGGTTGTCTTCATCGT 57.791 42.857 0.00 0.00 27.29 3.73
188 189 4.566004 TCTACCTTTGGTTGTCTTCATCG 58.434 43.478 0.00 0.00 37.09 3.84
189 190 4.938226 CCTCTACCTTTGGTTGTCTTCATC 59.062 45.833 0.00 0.00 37.09 2.92
190 191 4.597507 TCCTCTACCTTTGGTTGTCTTCAT 59.402 41.667 0.00 0.00 37.09 2.57
191 192 3.971305 TCCTCTACCTTTGGTTGTCTTCA 59.029 43.478 0.00 0.00 37.09 3.02
192 193 4.563786 CCTCCTCTACCTTTGGTTGTCTTC 60.564 50.000 0.00 0.00 37.09 2.87
193 194 3.328050 CCTCCTCTACCTTTGGTTGTCTT 59.672 47.826 0.00 0.00 37.09 3.01
194 195 2.907042 CCTCCTCTACCTTTGGTTGTCT 59.093 50.000 0.00 0.00 37.09 3.41
195 196 2.638363 ACCTCCTCTACCTTTGGTTGTC 59.362 50.000 0.00 0.00 37.09 3.18
196 197 2.638363 GACCTCCTCTACCTTTGGTTGT 59.362 50.000 0.00 0.00 37.09 3.32
197 198 2.637872 TGACCTCCTCTACCTTTGGTTG 59.362 50.000 0.00 0.00 37.09 3.77
198 199 2.638363 GTGACCTCCTCTACCTTTGGTT 59.362 50.000 0.00 0.00 37.09 3.67
199 200 2.258109 GTGACCTCCTCTACCTTTGGT 58.742 52.381 0.00 0.00 40.16 3.67
200 201 2.257207 TGTGACCTCCTCTACCTTTGG 58.743 52.381 0.00 0.00 0.00 3.28
201 202 4.256920 CAATGTGACCTCCTCTACCTTTG 58.743 47.826 0.00 0.00 0.00 2.77
202 203 3.910627 ACAATGTGACCTCCTCTACCTTT 59.089 43.478 0.00 0.00 0.00 3.11
203 204 3.521727 ACAATGTGACCTCCTCTACCTT 58.478 45.455 0.00 0.00 0.00 3.50
204 205 3.191888 ACAATGTGACCTCCTCTACCT 57.808 47.619 0.00 0.00 0.00 3.08
205 206 3.600388 CAACAATGTGACCTCCTCTACC 58.400 50.000 0.00 0.00 0.00 3.18
206 207 3.003480 GCAACAATGTGACCTCCTCTAC 58.997 50.000 0.00 0.00 0.00 2.59
207 208 2.353704 CGCAACAATGTGACCTCCTCTA 60.354 50.000 0.00 0.00 39.48 2.43
208 209 1.609061 CGCAACAATGTGACCTCCTCT 60.609 52.381 0.00 0.00 39.48 3.69
209 210 0.798776 CGCAACAATGTGACCTCCTC 59.201 55.000 0.00 0.00 39.48 3.71
210 211 0.108585 ACGCAACAATGTGACCTCCT 59.891 50.000 0.00 0.00 39.48 3.69
211 212 0.951558 AACGCAACAATGTGACCTCC 59.048 50.000 0.00 0.00 39.48 4.30
212 213 2.095919 GGTAACGCAACAATGTGACCTC 60.096 50.000 0.00 0.00 39.48 3.85
213 214 1.877443 GGTAACGCAACAATGTGACCT 59.123 47.619 0.00 0.00 39.48 3.85
214 215 1.604755 TGGTAACGCAACAATGTGACC 59.395 47.619 0.00 0.00 39.48 4.02
215 216 2.289547 ACTGGTAACGCAACAATGTGAC 59.710 45.455 0.00 0.00 39.48 3.67
216 217 2.289274 CACTGGTAACGCAACAATGTGA 59.711 45.455 0.00 0.00 39.48 3.58
217 218 2.649516 CACTGGTAACGCAACAATGTG 58.350 47.619 0.00 0.00 42.84 3.21
218 219 1.001815 GCACTGGTAACGCAACAATGT 60.002 47.619 0.00 0.00 42.51 2.71
219 220 1.665735 GGCACTGGTAACGCAACAATG 60.666 52.381 0.00 0.00 42.51 2.82
220 221 0.596082 GGCACTGGTAACGCAACAAT 59.404 50.000 0.00 0.00 42.51 2.71
221 222 0.748367 TGGCACTGGTAACGCAACAA 60.748 50.000 0.00 0.00 42.51 2.83
222 223 0.536233 ATGGCACTGGTAACGCAACA 60.536 50.000 0.00 0.00 42.51 3.33
223 224 0.109781 CATGGCACTGGTAACGCAAC 60.110 55.000 0.00 0.00 42.51 4.17
224 225 1.240641 CCATGGCACTGGTAACGCAA 61.241 55.000 0.00 0.00 42.51 4.85
225 226 1.673993 CCATGGCACTGGTAACGCA 60.674 57.895 0.00 0.00 42.51 5.24
226 227 3.051392 GCCATGGCACTGGTAACGC 62.051 63.158 32.08 0.00 41.49 4.84
227 228 2.406616 GGCCATGGCACTGGTAACG 61.407 63.158 36.56 0.00 44.11 3.18
228 229 1.304052 TGGCCATGGCACTGGTAAC 60.304 57.895 36.56 17.81 44.11 2.50
229 230 3.175304 TGGCCATGGCACTGGTAA 58.825 55.556 36.56 10.90 44.11 2.85
236 237 2.911509 GTGTGTGTGGCCATGGCA 60.912 61.111 36.56 20.63 44.11 4.92
237 238 4.041917 CGTGTGTGTGGCCATGGC 62.042 66.667 29.47 29.47 41.06 4.40
238 239 2.192861 AACGTGTGTGTGGCCATGG 61.193 57.895 9.72 7.63 0.00 3.66
239 240 1.008652 CAACGTGTGTGTGGCCATG 60.009 57.895 9.72 0.00 0.00 3.66
240 241 1.444119 GACAACGTGTGTGTGGCCAT 61.444 55.000 9.72 0.00 41.96 4.40
241 242 2.045829 ACAACGTGTGTGTGGCCA 60.046 55.556 0.00 0.00 39.72 5.36
242 243 2.713154 GACAACGTGTGTGTGGCC 59.287 61.111 0.00 0.00 41.96 5.36
243 244 2.713154 GGACAACGTGTGTGTGGC 59.287 61.111 7.89 0.00 41.96 5.01
244 245 2.530497 CGGGACAACGTGTGTGTGG 61.530 63.158 7.89 0.00 41.96 4.17
245 246 1.487452 CTCGGGACAACGTGTGTGTG 61.487 60.000 7.89 0.00 41.96 3.82
246 247 1.227147 CTCGGGACAACGTGTGTGT 60.227 57.895 7.89 0.00 41.96 3.72
247 248 1.954146 CCTCGGGACAACGTGTGTG 60.954 63.158 7.89 0.00 41.96 3.82
248 249 2.420043 CCTCGGGACAACGTGTGT 59.580 61.111 0.00 0.00 45.74 3.72
249 250 3.041940 GCCTCGGGACAACGTGTG 61.042 66.667 0.00 0.00 34.94 3.82
250 251 4.657824 CGCCTCGGGACAACGTGT 62.658 66.667 0.00 0.00 34.94 4.49
261 262 4.441695 TCTTGAGCAGGCGCCTCG 62.442 66.667 30.29 22.86 39.83 4.63
262 263 2.817396 GTCTTGAGCAGGCGCCTC 60.817 66.667 30.29 21.36 39.83 4.70
263 264 4.400961 GGTCTTGAGCAGGCGCCT 62.401 66.667 27.08 27.08 39.83 5.52
265 266 4.704833 TGGGTCTTGAGCAGGCGC 62.705 66.667 0.00 0.00 40.54 6.53
266 267 2.743928 GTGGGTCTTGAGCAGGCG 60.744 66.667 2.24 0.00 0.00 5.52
267 268 2.360475 GGTGGGTCTTGAGCAGGC 60.360 66.667 2.24 0.00 0.00 4.85
268 269 2.046892 CGGTGGGTCTTGAGCAGG 60.047 66.667 2.24 0.00 0.00 4.85
269 270 1.374758 GACGGTGGGTCTTGAGCAG 60.375 63.158 2.24 0.00 42.62 4.24
270 271 2.137528 TGACGGTGGGTCTTGAGCA 61.138 57.895 2.24 0.00 46.24 4.26
271 272 1.668151 GTGACGGTGGGTCTTGAGC 60.668 63.158 0.00 0.00 46.24 4.26
272 273 0.319900 CTGTGACGGTGGGTCTTGAG 60.320 60.000 0.00 0.00 46.24 3.02
273 274 1.745890 CTGTGACGGTGGGTCTTGA 59.254 57.895 0.00 0.00 46.24 3.02
274 275 1.961277 GCTGTGACGGTGGGTCTTG 60.961 63.158 0.00 0.00 46.24 3.02
275 276 0.830444 TAGCTGTGACGGTGGGTCTT 60.830 55.000 0.00 0.00 46.24 3.01
276 277 1.228769 TAGCTGTGACGGTGGGTCT 60.229 57.895 0.00 0.00 46.24 3.85
277 278 1.080025 GTAGCTGTGACGGTGGGTC 60.080 63.158 0.00 0.00 46.27 4.46
278 279 2.927580 CGTAGCTGTGACGGTGGGT 61.928 63.158 0.00 0.00 36.66 4.51
279 280 2.126071 CGTAGCTGTGACGGTGGG 60.126 66.667 0.00 0.00 36.66 4.61
382 383 4.798682 TCCCCTTCGCCTCCCCTC 62.799 72.222 0.00 0.00 0.00 4.30
383 384 4.806339 CTCCCCTTCGCCTCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
392 393 3.787001 CTGTCCGCCCTCCCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
403 404 2.912987 ATCTCTCCCGACCCTGTCCG 62.913 65.000 0.00 0.00 0.00 4.79
404 405 1.075896 ATCTCTCCCGACCCTGTCC 60.076 63.158 0.00 0.00 0.00 4.02
405 406 0.106419 AGATCTCTCCCGACCCTGTC 60.106 60.000 0.00 0.00 0.00 3.51
406 407 0.396417 CAGATCTCTCCCGACCCTGT 60.396 60.000 0.00 0.00 0.00 4.00
407 408 1.112315 CCAGATCTCTCCCGACCCTG 61.112 65.000 0.00 0.00 0.00 4.45
408 409 1.231641 CCAGATCTCTCCCGACCCT 59.768 63.158 0.00 0.00 0.00 4.34
409 410 0.825840 CTCCAGATCTCTCCCGACCC 60.826 65.000 0.00 0.00 0.00 4.46
410 411 0.825840 CCTCCAGATCTCTCCCGACC 60.826 65.000 0.00 0.00 0.00 4.79
411 412 0.825840 CCCTCCAGATCTCTCCCGAC 60.826 65.000 0.00 0.00 0.00 4.79
412 413 1.539165 CCCTCCAGATCTCTCCCGA 59.461 63.158 0.00 0.00 0.00 5.14
413 414 1.532794 CCCCTCCAGATCTCTCCCG 60.533 68.421 0.00 0.00 0.00 5.14
414 415 0.266152 TTCCCCTCCAGATCTCTCCC 59.734 60.000 0.00 0.00 0.00 4.30
415 416 1.715785 CTTCCCCTCCAGATCTCTCC 58.284 60.000 0.00 0.00 0.00 3.71
416 417 1.715785 CCTTCCCCTCCAGATCTCTC 58.284 60.000 0.00 0.00 0.00 3.20
417 418 0.267356 CCCTTCCCCTCCAGATCTCT 59.733 60.000 0.00 0.00 0.00 3.10
418 419 0.766288 CCCCTTCCCCTCCAGATCTC 60.766 65.000 0.00 0.00 0.00 2.75
419 420 1.319799 CCCCTTCCCCTCCAGATCT 59.680 63.158 0.00 0.00 0.00 2.75
420 421 1.772156 CCCCCTTCCCCTCCAGATC 60.772 68.421 0.00 0.00 0.00 2.75
421 422 2.272170 TCCCCCTTCCCCTCCAGAT 61.272 63.158 0.00 0.00 0.00 2.90
422 423 2.879490 TCCCCCTTCCCCTCCAGA 60.879 66.667 0.00 0.00 0.00 3.86
423 424 2.367512 CTCCCCCTTCCCCTCCAG 60.368 72.222 0.00 0.00 0.00 3.86
424 425 4.038804 CCTCCCCCTTCCCCTCCA 62.039 72.222 0.00 0.00 0.00 3.86
426 427 4.760220 TGCCTCCCCCTTCCCCTC 62.760 72.222 0.00 0.00 0.00 4.30
427 428 4.767892 CTGCCTCCCCCTTCCCCT 62.768 72.222 0.00 0.00 0.00 4.79
428 429 4.760220 TCTGCCTCCCCCTTCCCC 62.760 72.222 0.00 0.00 0.00 4.81
429 430 3.093172 CTCTGCCTCCCCCTTCCC 61.093 72.222 0.00 0.00 0.00 3.97
430 431 3.093172 CCTCTGCCTCCCCCTTCC 61.093 72.222 0.00 0.00 0.00 3.46
431 432 3.093172 CCCTCTGCCTCCCCCTTC 61.093 72.222 0.00 0.00 0.00 3.46
432 433 4.767892 CCCCTCTGCCTCCCCCTT 62.768 72.222 0.00 0.00 0.00 3.95
435 436 4.095400 TCTCCCCTCTGCCTCCCC 62.095 72.222 0.00 0.00 0.00 4.81
436 437 2.445654 CTCTCCCCTCTGCCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
437 438 3.160748 GCTCTCCCCTCTGCCTCC 61.161 72.222 0.00 0.00 0.00 4.30
438 439 3.535962 CGCTCTCCCCTCTGCCTC 61.536 72.222 0.00 0.00 0.00 4.70
441 442 3.844090 GTCCGCTCTCCCCTCTGC 61.844 72.222 0.00 0.00 0.00 4.26
442 443 3.522731 CGTCCGCTCTCCCCTCTG 61.523 72.222 0.00 0.00 0.00 3.35
443 444 4.824515 CCGTCCGCTCTCCCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
447 448 4.816984 TCTCCCGTCCGCTCTCCC 62.817 72.222 0.00 0.00 0.00 4.30
448 449 3.213402 CTCTCCCGTCCGCTCTCC 61.213 72.222 0.00 0.00 0.00 3.71
449 450 3.213402 CCTCTCCCGTCCGCTCTC 61.213 72.222 0.00 0.00 0.00 3.20
450 451 2.783122 TTTCCTCTCCCGTCCGCTCT 62.783 60.000 0.00 0.00 0.00 4.09
451 452 2.286127 CTTTCCTCTCCCGTCCGCTC 62.286 65.000 0.00 0.00 0.00 5.03
452 453 2.283676 TTTCCTCTCCCGTCCGCT 60.284 61.111 0.00 0.00 0.00 5.52
453 454 1.677637 ATCTTTCCTCTCCCGTCCGC 61.678 60.000 0.00 0.00 0.00 5.54
454 455 0.386113 GATCTTTCCTCTCCCGTCCG 59.614 60.000 0.00 0.00 0.00 4.79
455 456 0.386113 CGATCTTTCCTCTCCCGTCC 59.614 60.000 0.00 0.00 0.00 4.79
456 457 0.386113 CCGATCTTTCCTCTCCCGTC 59.614 60.000 0.00 0.00 0.00 4.79
457 458 1.043673 CCCGATCTTTCCTCTCCCGT 61.044 60.000 0.00 0.00 0.00 5.28
458 459 0.755698 TCCCGATCTTTCCTCTCCCG 60.756 60.000 0.00 0.00 0.00 5.14
459 460 1.044611 CTCCCGATCTTTCCTCTCCC 58.955 60.000 0.00 0.00 0.00 4.30
460 461 1.960689 CTCTCCCGATCTTTCCTCTCC 59.039 57.143 0.00 0.00 0.00 3.71
461 462 1.960689 CCTCTCCCGATCTTTCCTCTC 59.039 57.143 0.00 0.00 0.00 3.20
462 463 1.571457 TCCTCTCCCGATCTTTCCTCT 59.429 52.381 0.00 0.00 0.00 3.69
463 464 1.960689 CTCCTCTCCCGATCTTTCCTC 59.039 57.143 0.00 0.00 0.00 3.71
464 465 1.571457 TCTCCTCTCCCGATCTTTCCT 59.429 52.381 0.00 0.00 0.00 3.36
465 466 1.960689 CTCTCCTCTCCCGATCTTTCC 59.039 57.143 0.00 0.00 0.00 3.13
466 467 1.960689 CCTCTCCTCTCCCGATCTTTC 59.039 57.143 0.00 0.00 0.00 2.62
467 468 1.571457 TCCTCTCCTCTCCCGATCTTT 59.429 52.381 0.00 0.00 0.00 2.52
468 469 1.144913 CTCCTCTCCTCTCCCGATCTT 59.855 57.143 0.00 0.00 0.00 2.40
469 470 0.771127 CTCCTCTCCTCTCCCGATCT 59.229 60.000 0.00 0.00 0.00 2.75
470 471 0.768622 TCTCCTCTCCTCTCCCGATC 59.231 60.000 0.00 0.00 0.00 3.69
471 472 0.771127 CTCTCCTCTCCTCTCCCGAT 59.229 60.000 0.00 0.00 0.00 4.18
472 473 1.349542 CCTCTCCTCTCCTCTCCCGA 61.350 65.000 0.00 0.00 0.00 5.14
473 474 1.150536 CCTCTCCTCTCCTCTCCCG 59.849 68.421 0.00 0.00 0.00 5.14
474 475 1.541672 CCCTCTCCTCTCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
475 476 0.996762 TCCCCTCTCCTCTCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
476 477 0.478507 CTCCCCTCTCCTCTCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
477 478 0.998945 CCTCCCCTCTCCTCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
478 479 1.541672 CCTCCCCTCTCCTCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
479 480 2.018086 CCCTCCCCTCTCCTCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
480 481 2.612251 CCCTCCCCTCTCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
481 482 2.015726 TCCCCTCCCCTCTCCTCTC 61.016 68.421 0.00 0.00 0.00 3.20
482 483 2.018086 CTCCCCTCCCCTCTCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
483 484 2.612251 CTCCCCTCCCCTCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
484 485 3.039526 CCTCCCCTCCCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
485 486 4.890306 GCCTCCCCTCCCCTCTCC 62.890 77.778 0.00 0.00 0.00 3.71
486 487 4.095400 TGCCTCCCCTCCCCTCTC 62.095 72.222 0.00 0.00 0.00 3.20
487 488 4.101077 CTGCCTCCCCTCCCCTCT 62.101 72.222 0.00 0.00 0.00 3.69
488 489 4.095400 TCTGCCTCCCCTCCCCTC 62.095 72.222 0.00 0.00 0.00 4.30
489 490 4.101077 CTCTGCCTCCCCTCCCCT 62.101 72.222 0.00 0.00 0.00 4.79
491 492 3.952799 AACCTCTGCCTCCCCTCCC 62.953 68.421 0.00 0.00 0.00 4.30
492 493 1.501654 AAAACCTCTGCCTCCCCTCC 61.502 60.000 0.00 0.00 0.00 4.30
493 494 0.405973 AAAAACCTCTGCCTCCCCTC 59.594 55.000 0.00 0.00 0.00 4.30
494 495 2.569100 AAAAACCTCTGCCTCCCCT 58.431 52.632 0.00 0.00 0.00 4.79
513 514 8.390354 CGTTCAATGCAGACTGATATTAGAAAA 58.610 33.333 6.65 0.00 0.00 2.29
514 515 7.549134 ACGTTCAATGCAGACTGATATTAGAAA 59.451 33.333 6.65 0.05 0.00 2.52
515 516 7.041721 ACGTTCAATGCAGACTGATATTAGAA 58.958 34.615 6.65 9.20 0.00 2.10
516 517 6.573434 ACGTTCAATGCAGACTGATATTAGA 58.427 36.000 6.65 4.38 0.00 2.10
517 518 6.834959 ACGTTCAATGCAGACTGATATTAG 57.165 37.500 6.65 0.00 0.00 1.73
527 528 1.720805 ATGCGTACGTTCAATGCAGA 58.279 45.000 17.90 0.00 41.85 4.26
536 537 6.200665 TGTTTTCACTAGTAAATGCGTACGTT 59.799 34.615 17.90 5.98 0.00 3.99
543 544 8.480066 GCTTCTTTTGTTTTCACTAGTAAATGC 58.520 33.333 0.00 0.00 0.00 3.56
617 618 3.584834 TGGTGTTCACTGTATCATCGTG 58.415 45.455 2.98 0.00 0.00 4.35
643 644 7.835181 AGCTAGGTTTACTCTACTGTCTTACAT 59.165 37.037 0.00 0.00 0.00 2.29
653 654 5.497273 CGTTACGAGCTAGGTTTACTCTAC 58.503 45.833 0.00 0.00 0.00 2.59
670 672 1.071128 TGGTTGGGTTCCCGTTACG 59.929 57.895 0.00 0.00 0.00 3.18
677 679 2.983592 CTGCCGTGGTTGGGTTCC 60.984 66.667 0.00 0.00 0.00 3.62
690 692 1.243902 TTCCGAATGGTTTGACTGCC 58.756 50.000 0.00 0.00 36.30 4.85
738 2529 1.497309 ATTGGCTCTCGGGGGTTTGA 61.497 55.000 0.00 0.00 0.00 2.69
789 2584 0.698238 TGTGGGAAAGTGGAGGGATG 59.302 55.000 0.00 0.00 0.00 3.51
790 2585 0.698818 GTGTGGGAAAGTGGAGGGAT 59.301 55.000 0.00 0.00 0.00 3.85
860 2655 4.382685 CGCCAAGAACAGGGAAAGATAGTA 60.383 45.833 0.00 0.00 0.00 1.82
861 2656 3.619979 CGCCAAGAACAGGGAAAGATAGT 60.620 47.826 0.00 0.00 0.00 2.12
862 2657 2.939103 CGCCAAGAACAGGGAAAGATAG 59.061 50.000 0.00 0.00 0.00 2.08
880 2678 1.661821 AGAGACGATAATGCGCGCC 60.662 57.895 30.77 11.85 33.86 6.53
939 2737 0.603569 GACGTCCTTCCTCAGCAGAA 59.396 55.000 3.51 0.00 0.00 3.02
947 2745 9.729281 TTTTACAAAAATATAGACGTCCTTCCT 57.271 29.630 13.01 0.00 0.00 3.36
1045 2857 2.372264 GCTTGATGCAAGAAGATGGGA 58.628 47.619 11.08 0.00 43.42 4.37
1046 2858 1.065102 CGCTTGATGCAAGAAGATGGG 59.935 52.381 11.08 0.00 43.42 4.00
1123 2935 2.027625 GTTTGCTCGTCTCCACCGG 61.028 63.158 0.00 0.00 0.00 5.28
1283 3095 1.139095 GACGAGTCGGTGGATGACC 59.861 63.158 18.30 0.00 42.07 4.02
1686 3500 3.484547 CGCCGTTTACGTGCTCCC 61.485 66.667 0.00 0.00 37.74 4.30
1729 3543 1.899814 AGCTAAGGGACATCGACACAA 59.100 47.619 0.00 0.00 0.00 3.33
1737 3553 2.114616 CAGGAGTCAGCTAAGGGACAT 58.885 52.381 4.89 0.00 36.50 3.06
1824 3641 7.222872 AGCAAAACTGAATAGAGGGAGATATG 58.777 38.462 0.00 0.00 0.00 1.78
1935 3758 4.183865 CGCACACATATGATATACCCCTG 58.816 47.826 10.38 0.00 0.00 4.45
2117 3974 5.966742 AGCATTTTTCTCCTTGTAGAACC 57.033 39.130 0.00 0.00 35.25 3.62
2183 4048 9.737844 AGTGTATATACTCCTAACTAGCCTAAC 57.262 37.037 13.89 0.00 0.00 2.34
2338 4205 6.367983 AGAGGATACAATAAATGTGGCACAT 58.632 36.000 26.78 26.78 43.77 3.21
2340 4207 6.058183 AGAGAGGATACAATAAATGTGGCAC 58.942 40.000 11.55 11.55 43.77 5.01
2486 4360 3.963129 TGAAAGGAGTTCCACTTGTGTT 58.037 40.909 0.28 0.00 38.89 3.32
2529 4403 5.417266 AGAAGTTTCCTACTACTCCGGTAAC 59.583 44.000 0.00 0.00 35.54 2.50
2531 4405 5.184892 AGAAGTTTCCTACTACTCCGGTA 57.815 43.478 0.00 0.00 35.54 4.02
2560 4434 6.432607 AGTAGATCATTCAAGCATGTTGTG 57.567 37.500 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.