Multiple sequence alignment - TraesCS1A01G231500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G231500 chr1A 100.000 5051 0 0 1 5051 404624591 404629641 0.000000e+00 9328
1 TraesCS1A01G231500 chr1A 84.195 696 90 17 3348 4033 459301758 459301073 0.000000e+00 658
2 TraesCS1A01G231500 chr1A 79.443 934 155 26 1068 1990 459302901 459301994 1.190000e-175 627
3 TraesCS1A01G231500 chr1A 98.101 158 3 0 2 159 269922762 269922605 4.980000e-70 276
4 TraesCS1A01G231500 chr1A 96.951 164 5 0 1 164 400943723 400943560 4.980000e-70 276
5 TraesCS1A01G231500 chr1D 90.822 2299 103 39 192 2426 318854741 318852487 0.000000e+00 2977
6 TraesCS1A01G231500 chr1D 91.601 1917 103 29 2505 4383 318852378 318850482 0.000000e+00 2595
7 TraesCS1A01G231500 chr1D 80.361 942 147 27 1072 2001 359779051 359778136 0.000000e+00 680
8 TraesCS1A01G231500 chr1D 91.649 479 40 0 4573 5051 318850484 318850006 0.000000e+00 664
9 TraesCS1A01G231500 chr1D 83.357 697 104 10 3348 4038 359777923 359777233 7.130000e-178 634
10 TraesCS1A01G231500 chr1D 89.709 447 43 3 4607 5051 273584544 273584099 7.340000e-158 568
11 TraesCS1A01G231500 chr1B 90.152 1970 134 24 164 2088 431408636 431406682 0.000000e+00 2508
12 TraesCS1A01G231500 chr1B 95.018 1124 44 8 3264 4384 431404367 431403253 0.000000e+00 1755
13 TraesCS1A01G231500 chr1B 80.745 940 144 27 1072 2001 481850407 481849495 0.000000e+00 699
14 TraesCS1A01G231500 chr1B 95.975 323 10 3 2941 3262 431404923 431404603 5.790000e-144 521
15 TraesCS1A01G231500 chr3A 87.957 465 51 5 4590 5051 602510054 602510516 1.240000e-150 544
16 TraesCS1A01G231500 chr3A 92.784 194 11 3 4386 4576 56664110 56664303 1.380000e-70 278
17 TraesCS1A01G231500 chr3D 88.063 444 49 4 4611 5051 83091048 83090606 1.610000e-144 523
18 TraesCS1A01G231500 chr7D 87.281 456 57 1 4597 5051 366428098 366427643 2.080000e-143 520
19 TraesCS1A01G231500 chr4D 88.276 435 48 2 4606 5040 38139100 38138669 7.500000e-143 518
20 TraesCS1A01G231500 chr2D 87.810 443 51 3 4598 5040 465929945 465929506 2.700000e-142 516
21 TraesCS1A01G231500 chr2D 86.842 456 56 4 4598 5051 188893348 188893801 1.620000e-139 507
22 TraesCS1A01G231500 chr6A 87.033 455 57 2 4598 5051 315629569 315630022 3.490000e-141 512
23 TraesCS1A01G231500 chr6A 96.364 165 6 0 1 165 129655152 129654988 6.440000e-69 272
24 TraesCS1A01G231500 chr6A 89.202 213 18 5 4370 4577 20248097 20248309 1.390000e-65 261
25 TraesCS1A01G231500 chrUn 93.434 198 10 3 4376 4570 30689430 30689233 1.780000e-74 291
26 TraesCS1A01G231500 chr5A 91.787 207 10 6 4375 4575 30568020 30567815 1.070000e-71 281
27 TraesCS1A01G231500 chr5A 96.341 164 6 0 1 164 285352922 285352759 2.320000e-68 270
28 TraesCS1A01G231500 chr5A 96.341 164 6 0 1 164 546282566 546282729 2.320000e-68 270
29 TraesCS1A01G231500 chr5A 96.341 164 6 0 1 164 659754160 659753997 2.320000e-68 270
30 TraesCS1A01G231500 chr5A 95.808 167 5 2 1 166 554892003 554892168 8.340000e-68 268
31 TraesCS1A01G231500 chr7A 92.000 200 10 6 4377 4571 130378184 130378382 4.980000e-70 276
32 TraesCS1A01G231500 chr7A 91.133 203 14 4 4378 4576 617432808 617432606 6.440000e-69 272
33 TraesCS1A01G231500 chr7A 96.341 164 6 0 1 164 695024083 695023920 2.320000e-68 270
34 TraesCS1A01G231500 chr7A 89.904 208 17 4 4386 4590 162776297 162776091 1.080000e-66 265
35 TraesCS1A01G231500 chr4A 92.746 193 11 3 4375 4564 11366012 11366204 4.980000e-70 276
36 TraesCS1A01G231500 chr4A 91.262 206 13 5 4378 4579 544173345 544173549 4.980000e-70 276
37 TraesCS1A01G231500 chr4A 93.750 176 8 3 1 175 291865395 291865222 1.390000e-65 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G231500 chr1A 404624591 404629641 5050 False 9328.000000 9328 100.000000 1 5051 1 chr1A.!!$F1 5050
1 TraesCS1A01G231500 chr1A 459301073 459302901 1828 True 642.500000 658 81.819000 1068 4033 2 chr1A.!!$R3 2965
2 TraesCS1A01G231500 chr1D 318850006 318854741 4735 True 2078.666667 2977 91.357333 192 5051 3 chr1D.!!$R2 4859
3 TraesCS1A01G231500 chr1D 359777233 359779051 1818 True 657.000000 680 81.859000 1072 4038 2 chr1D.!!$R3 2966
4 TraesCS1A01G231500 chr1B 431403253 431408636 5383 True 1594.666667 2508 93.715000 164 4384 3 chr1B.!!$R2 4220
5 TraesCS1A01G231500 chr1B 481849495 481850407 912 True 699.000000 699 80.745000 1072 2001 1 chr1B.!!$R1 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.037697 TGTCATAACGCTTCCGCTGT 60.038 50.000 0.00 0.0 38.22 4.40 F
1054 1106 0.035881 CCTGCTGCTCTCCTTGTTGA 59.964 55.000 0.00 0.0 0.00 3.18 F
1455 1510 1.215647 GACATGTCTCGACGGCCTT 59.784 57.895 18.83 0.0 0.00 4.35 F
2438 3040 0.179029 ACAAAGGGTGTTGGAGTCCG 60.179 55.000 4.30 0.0 37.01 4.79 F
2440 3042 0.179029 AAAGGGTGTTGGAGTCCGTG 60.179 55.000 4.30 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1744 1.454111 CCGGACCATCTCCTCGTCT 60.454 63.158 0.0 0.0 36.80 4.18 R
2177 2765 0.977395 GAGCACCGGCCTCCTATATT 59.023 55.000 0.0 0.0 42.56 1.28 R
2934 3664 1.464997 GCCTCTTGTTTGGTCATCGAC 59.535 52.381 0.0 0.0 0.00 4.20 R
3873 5629 0.319211 CGGAGTTGTTGTACTCGGCA 60.319 55.000 0.0 0.0 44.38 5.69 R
4186 5945 1.132643 CGTTCGTCCTTCCACCTCTAG 59.867 57.143 0.0 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.353437 GTCGGGCCGTGAAGACGT 62.353 66.667 27.32 0.00 44.54 4.34
18 19 2.672651 TCGGGCCGTGAAGACGTA 60.673 61.111 27.32 0.00 44.54 3.57
19 20 2.505557 CGGGCCGTGAAGACGTAC 60.506 66.667 19.97 0.00 44.54 3.67
20 21 2.968206 GGGCCGTGAAGACGTACT 59.032 61.111 0.00 0.00 44.54 2.73
21 22 1.647545 CGGGCCGTGAAGACGTACTA 61.648 60.000 19.97 0.00 44.54 1.82
22 23 0.179153 GGGCCGTGAAGACGTACTAC 60.179 60.000 0.00 0.00 44.54 2.73
23 24 0.807496 GGCCGTGAAGACGTACTACT 59.193 55.000 0.00 0.00 44.54 2.57
24 25 2.009774 GGCCGTGAAGACGTACTACTA 58.990 52.381 0.00 0.00 44.54 1.82
25 26 2.223135 GGCCGTGAAGACGTACTACTAC 60.223 54.545 0.00 0.00 44.54 2.73
26 27 2.416547 GCCGTGAAGACGTACTACTACA 59.583 50.000 0.00 0.00 44.54 2.74
27 28 3.064545 GCCGTGAAGACGTACTACTACAT 59.935 47.826 0.00 0.00 44.54 2.29
28 29 4.784710 GCCGTGAAGACGTACTACTACATC 60.785 50.000 0.00 0.00 44.54 3.06
29 30 4.330894 CCGTGAAGACGTACTACTACATCA 59.669 45.833 0.00 0.00 44.54 3.07
30 31 5.163824 CCGTGAAGACGTACTACTACATCAA 60.164 44.000 0.00 0.00 44.54 2.57
31 32 5.731723 CGTGAAGACGTACTACTACATCAAC 59.268 44.000 0.00 0.00 40.91 3.18
32 33 6.026513 GTGAAGACGTACTACTACATCAACC 58.973 44.000 0.00 0.00 0.00 3.77
33 34 4.871993 AGACGTACTACTACATCAACCG 57.128 45.455 0.00 0.00 0.00 4.44
34 35 3.064545 AGACGTACTACTACATCAACCGC 59.935 47.826 0.00 0.00 0.00 5.68
35 36 2.223112 ACGTACTACTACATCAACCGCG 60.223 50.000 0.00 0.00 0.00 6.46
36 37 2.223112 CGTACTACTACATCAACCGCGT 60.223 50.000 4.92 0.00 0.00 6.01
37 38 3.728864 CGTACTACTACATCAACCGCGTT 60.729 47.826 4.92 0.00 0.00 4.84
38 39 2.602878 ACTACTACATCAACCGCGTTG 58.397 47.619 4.92 10.14 43.99 4.10
39 40 2.029649 ACTACTACATCAACCGCGTTGT 60.030 45.455 16.97 9.99 43.23 3.32
40 41 1.425412 ACTACATCAACCGCGTTGTC 58.575 50.000 16.97 0.00 43.23 3.18
41 42 1.269883 ACTACATCAACCGCGTTGTCA 60.270 47.619 16.97 4.13 43.23 3.58
42 43 1.999735 CTACATCAACCGCGTTGTCAT 59.000 47.619 16.97 5.85 43.23 3.06
43 44 2.087501 ACATCAACCGCGTTGTCATA 57.912 45.000 16.97 3.28 43.23 2.15
44 45 2.418692 ACATCAACCGCGTTGTCATAA 58.581 42.857 16.97 2.99 43.23 1.90
45 46 2.158841 ACATCAACCGCGTTGTCATAAC 59.841 45.455 16.97 0.00 43.23 1.89
46 47 0.785378 TCAACCGCGTTGTCATAACG 59.215 50.000 16.97 1.71 43.23 3.18
52 53 3.850207 CGTTGTCATAACGCTTCCG 57.150 52.632 0.00 0.00 36.82 4.30
53 54 0.247145 CGTTGTCATAACGCTTCCGC 60.247 55.000 0.00 0.00 36.82 5.54
54 55 1.076332 GTTGTCATAACGCTTCCGCT 58.924 50.000 0.00 0.00 38.22 5.52
55 56 1.075542 TTGTCATAACGCTTCCGCTG 58.924 50.000 0.00 0.00 38.22 5.18
56 57 0.037697 TGTCATAACGCTTCCGCTGT 60.038 50.000 0.00 0.00 38.22 4.40
57 58 0.645868 GTCATAACGCTTCCGCTGTC 59.354 55.000 0.00 0.00 38.22 3.51
58 59 0.800683 TCATAACGCTTCCGCTGTCG 60.801 55.000 0.00 0.00 38.22 4.35
83 84 2.622436 ACGAGGGTACGTAGACTACAC 58.378 52.381 12.99 4.24 44.72 2.90
84 85 2.234908 ACGAGGGTACGTAGACTACACT 59.765 50.000 12.99 0.00 44.72 3.55
85 86 2.863137 CGAGGGTACGTAGACTACACTC 59.137 54.545 12.99 7.48 40.11 3.51
86 87 3.430098 CGAGGGTACGTAGACTACACTCT 60.430 52.174 14.10 9.02 40.97 3.24
87 88 4.119136 GAGGGTACGTAGACTACACTCTC 58.881 52.174 14.13 14.13 40.28 3.20
88 89 3.118445 AGGGTACGTAGACTACACTCTCC 60.118 52.174 12.99 7.06 0.00 3.71
89 90 3.202097 GGTACGTAGACTACACTCTCCC 58.798 54.545 12.99 0.32 0.00 4.30
90 91 2.416680 ACGTAGACTACACTCTCCCC 57.583 55.000 12.99 0.00 0.00 4.81
91 92 1.914798 ACGTAGACTACACTCTCCCCT 59.085 52.381 12.99 0.00 0.00 4.79
92 93 2.093021 ACGTAGACTACACTCTCCCCTC 60.093 54.545 12.99 0.00 0.00 4.30
93 94 2.171027 CGTAGACTACACTCTCCCCTCT 59.829 54.545 12.99 0.00 0.00 3.69
94 95 3.742013 CGTAGACTACACTCTCCCCTCTC 60.742 56.522 12.99 0.00 0.00 3.20
95 96 1.210967 AGACTACACTCTCCCCTCTCG 59.789 57.143 0.00 0.00 0.00 4.04
96 97 0.993470 ACTACACTCTCCCCTCTCGT 59.007 55.000 0.00 0.00 0.00 4.18
97 98 1.355043 ACTACACTCTCCCCTCTCGTT 59.645 52.381 0.00 0.00 0.00 3.85
98 99 1.746220 CTACACTCTCCCCTCTCGTTG 59.254 57.143 0.00 0.00 0.00 4.10
99 100 0.178958 ACACTCTCCCCTCTCGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
100 101 0.528470 CACTCTCCCCTCTCGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
101 102 0.112606 ACTCTCCCCTCTCGTTGTCA 59.887 55.000 0.00 0.00 0.00 3.58
102 103 1.272760 ACTCTCCCCTCTCGTTGTCAT 60.273 52.381 0.00 0.00 0.00 3.06
103 104 1.135915 CTCTCCCCTCTCGTTGTCATG 59.864 57.143 0.00 0.00 0.00 3.07
104 105 0.460987 CTCCCCTCTCGTTGTCATGC 60.461 60.000 0.00 0.00 0.00 4.06
105 106 1.191489 TCCCCTCTCGTTGTCATGCA 61.191 55.000 0.00 0.00 0.00 3.96
106 107 0.107508 CCCCTCTCGTTGTCATGCAT 60.108 55.000 0.00 0.00 0.00 3.96
107 108 1.293924 CCCTCTCGTTGTCATGCATC 58.706 55.000 0.00 0.00 0.00 3.91
108 109 1.405933 CCCTCTCGTTGTCATGCATCA 60.406 52.381 0.00 0.00 0.00 3.07
109 110 1.662629 CCTCTCGTTGTCATGCATCAC 59.337 52.381 0.00 0.00 0.00 3.06
110 111 1.662629 CTCTCGTTGTCATGCATCACC 59.337 52.381 0.00 0.00 0.00 4.02
111 112 1.001860 TCTCGTTGTCATGCATCACCA 59.998 47.619 0.00 0.00 0.00 4.17
112 113 2.011947 CTCGTTGTCATGCATCACCAT 58.988 47.619 0.00 0.00 0.00 3.55
113 114 1.738908 TCGTTGTCATGCATCACCATG 59.261 47.619 0.00 0.00 43.04 3.66
114 115 1.738908 CGTTGTCATGCATCACCATGA 59.261 47.619 0.00 1.03 46.78 3.07
120 121 2.621526 TCATGCATCACCATGATCTTGC 59.378 45.455 0.00 0.00 44.79 4.01
121 122 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
122 123 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
123 124 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
124 125 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
125 126 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
126 127 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
138 139 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
161 162 8.866970 TTTTTGAAATTACTACGTTCCCCTAT 57.133 30.769 0.00 0.00 0.00 2.57
162 163 9.956640 TTTTTGAAATTACTACGTTCCCCTATA 57.043 29.630 0.00 0.00 0.00 1.31
183 184 1.676014 GCGAGGGCTTGTGATAGTTGT 60.676 52.381 0.00 0.00 35.83 3.32
187 188 0.447801 GGCTTGTGATAGTTGTGCGG 59.552 55.000 0.00 0.00 0.00 5.69
189 190 1.135972 GCTTGTGATAGTTGTGCGGTG 60.136 52.381 0.00 0.00 0.00 4.94
199 200 0.747283 TTGTGCGGTGGGTACGTTTT 60.747 50.000 0.00 0.00 33.41 2.43
214 215 1.461888 CGTTTTTCAGGTCGATCGTGC 60.462 52.381 15.94 9.31 32.68 5.34
236 237 2.564062 AGTCATGGGGTTTCATGCTTTG 59.436 45.455 0.00 0.00 42.96 2.77
303 305 8.537049 TCCTGTTAATGAATTGAGCAATTTTG 57.463 30.769 9.57 0.00 40.77 2.44
342 344 3.732212 ACAAGGCAAATCTTTTGCTTCC 58.268 40.909 20.56 7.88 44.36 3.46
350 352 6.073276 GGCAAATCTTTTGCTTCCGTTTAAAT 60.073 34.615 20.56 0.00 44.36 1.40
435 437 6.123651 ACATAGTTAATCGTTGGGGCAAATA 58.876 36.000 0.00 0.00 0.00 1.40
452 454 6.354039 GCAAATATTTTGCCTCCATTTCAG 57.646 37.500 12.74 0.00 39.38 3.02
487 497 9.783081 AAAGAAATGGAAGCATCTTACATTTTT 57.217 25.926 23.08 17.62 40.60 1.94
512 522 8.060931 TGCATAAATCTATTTGCCAAGTAACA 57.939 30.769 0.00 0.00 0.00 2.41
567 580 1.884235 ACTAAGCACACAAGTCAGGC 58.116 50.000 0.00 0.00 0.00 4.85
573 586 1.525995 ACACAAGTCAGGCCAACCG 60.526 57.895 5.01 0.00 42.76 4.44
878 923 6.183360 GCTCACCAAAATCTGATCCTAAAGAC 60.183 42.308 0.00 0.00 0.00 3.01
891 936 3.952323 TCCTAAAGACCAGTAGATCACCG 59.048 47.826 0.00 0.00 0.00 4.94
898 943 1.550065 CAGTAGATCACCGTGAAGCG 58.450 55.000 5.07 0.00 40.95 4.68
932 977 7.606456 TCTTCACCTATAAAAATGACCACTGAC 59.394 37.037 0.00 0.00 0.00 3.51
1054 1106 0.035881 CCTGCTGCTCTCCTTGTTGA 59.964 55.000 0.00 0.00 0.00 3.18
1060 1112 3.669023 GCTGCTCTCCTTGTTGATTTTCG 60.669 47.826 0.00 0.00 0.00 3.46
1230 1282 2.417097 GCCAGCGCCAACAAGTTT 59.583 55.556 2.29 0.00 0.00 2.66
1443 1498 1.349026 CTGACCAACCAGGAGACATGT 59.651 52.381 0.00 0.00 41.22 3.21
1455 1510 1.215647 GACATGTCTCGACGGCCTT 59.784 57.895 18.83 0.00 0.00 4.35
1533 1588 1.293498 CGGCACCAAGCTCTACAGT 59.707 57.895 0.00 0.00 44.79 3.55
1545 1600 2.351455 CTCTACAGTCTCTCGCTGTCA 58.649 52.381 0.95 0.00 44.96 3.58
1956 2032 1.736645 CAACCGGAGCGTTGTCGAT 60.737 57.895 9.46 0.00 38.64 3.59
2034 2118 6.968904 GCATATGACACATTACTTTCTTGGTG 59.031 38.462 6.97 0.00 0.00 4.17
2038 2122 7.397892 TGACACATTACTTTCTTGGTGAAAA 57.602 32.000 0.00 0.00 43.25 2.29
2118 2211 4.102649 CCTTTTGGTCTTTTGTTCACGTC 58.897 43.478 0.00 0.00 34.07 4.34
2119 2212 4.380023 CCTTTTGGTCTTTTGTTCACGTCA 60.380 41.667 0.00 0.00 34.07 4.35
2122 2215 6.438259 TTTGGTCTTTTGTTCACGTCAATA 57.562 33.333 0.00 0.00 0.00 1.90
2124 2217 6.627395 TGGTCTTTTGTTCACGTCAATATT 57.373 33.333 0.00 0.00 0.00 1.28
2167 2755 8.921205 GTCTTTTGGGTATAGAACATACTCCTA 58.079 37.037 0.00 0.00 0.00 2.94
2189 2777 6.940867 CCTACTTTTTACCAATATAGGAGGCC 59.059 42.308 0.00 0.00 31.16 5.19
2200 2788 2.219449 TAGGAGGCCGGTGCTCTACA 62.219 60.000 1.90 0.00 37.74 2.74
2207 2795 0.729116 CCGGTGCTCTACATTTGCAG 59.271 55.000 0.00 0.00 37.39 4.41
2209 2797 1.129251 CGGTGCTCTACATTTGCAGTG 59.871 52.381 0.00 0.14 37.39 3.66
2211 2799 2.417933 GGTGCTCTACATTTGCAGTGAG 59.582 50.000 8.02 4.56 37.39 3.51
2212 2800 3.329386 GTGCTCTACATTTGCAGTGAGA 58.671 45.455 8.02 5.93 37.39 3.27
2213 2801 3.748048 GTGCTCTACATTTGCAGTGAGAA 59.252 43.478 8.02 0.00 37.39 2.87
2214 2802 4.214119 GTGCTCTACATTTGCAGTGAGAAA 59.786 41.667 8.02 0.00 37.39 2.52
2216 2804 5.299028 TGCTCTACATTTGCAGTGAGAAAAA 59.701 36.000 8.02 0.00 32.55 1.94
2238 2826 8.966155 AAAAAGGGGAAATAGGTATCTCAAAA 57.034 30.769 0.00 0.00 0.00 2.44
2239 2827 8.966155 AAAAGGGGAAATAGGTATCTCAAAAA 57.034 30.769 0.00 0.00 0.00 1.94
2262 2850 5.458451 AAGAAGAAGAAGGGGGAAATAGG 57.542 43.478 0.00 0.00 0.00 2.57
2268 2856 4.317530 AGAAGGGGGAAATAGGTTCAAC 57.682 45.455 0.00 0.00 38.06 3.18
2297 2891 6.918067 AAAGAAGAAGGGGAAAATAGGTTG 57.082 37.500 0.00 0.00 0.00 3.77
2317 2915 7.158697 AGGTTGGTTACAAATTTTGGATTAGC 58.841 34.615 13.42 1.75 38.54 3.09
2320 2918 9.353999 GTTGGTTACAAATTTTGGATTAGCTAG 57.646 33.333 13.42 0.00 38.54 3.42
2334 2932 6.327626 TGGATTAGCTAGATAAGAGCAAGGTT 59.672 38.462 6.60 0.00 42.69 3.50
2335 2933 6.871492 GGATTAGCTAGATAAGAGCAAGGTTC 59.129 42.308 6.60 0.00 42.69 3.62
2337 2935 5.885449 AGCTAGATAAGAGCAAGGTTCAT 57.115 39.130 0.00 0.00 42.69 2.57
2338 2936 5.852827 AGCTAGATAAGAGCAAGGTTCATC 58.147 41.667 0.00 0.00 42.69 2.92
2339 2937 5.602145 AGCTAGATAAGAGCAAGGTTCATCT 59.398 40.000 0.00 0.00 42.69 2.90
2340 2938 6.780031 AGCTAGATAAGAGCAAGGTTCATCTA 59.220 38.462 0.00 0.00 42.69 1.98
2341 2939 7.454380 AGCTAGATAAGAGCAAGGTTCATCTAT 59.546 37.037 0.00 0.00 42.69 1.98
2342 2940 8.744652 GCTAGATAAGAGCAAGGTTCATCTATA 58.255 37.037 0.00 0.00 39.84 1.31
2406 3008 6.454223 ACTATGTCATTAATATGTGGCCCT 57.546 37.500 0.00 0.00 33.34 5.19
2409 3011 5.387113 TGTCATTAATATGTGGCCCTTCT 57.613 39.130 0.00 0.00 33.34 2.85
2426 3028 5.359756 CCCTTCTTTTTCTTTCACAAAGGG 58.640 41.667 2.67 2.67 44.08 3.95
2427 3029 5.104941 CCCTTCTTTTTCTTTCACAAAGGGT 60.105 40.000 8.39 0.00 44.36 4.34
2437 3039 1.318576 CACAAAGGGTGTTGGAGTCC 58.681 55.000 0.73 0.73 42.75 3.85
2438 3040 0.179029 ACAAAGGGTGTTGGAGTCCG 60.179 55.000 4.30 0.00 37.01 4.79
2439 3041 0.179029 CAAAGGGTGTTGGAGTCCGT 60.179 55.000 4.30 0.00 0.00 4.69
2440 3042 0.179029 AAAGGGTGTTGGAGTCCGTG 60.179 55.000 4.30 0.00 0.00 4.94
2441 3043 2.668550 GGGTGTTGGAGTCCGTGC 60.669 66.667 4.30 0.00 0.00 5.34
2442 3044 2.426023 GGTGTTGGAGTCCGTGCT 59.574 61.111 4.30 0.00 0.00 4.40
2443 3045 1.961277 GGTGTTGGAGTCCGTGCTG 60.961 63.158 4.30 0.00 0.00 4.41
2444 3046 2.280797 TGTTGGAGTCCGTGCTGC 60.281 61.111 4.30 0.00 0.00 5.25
2445 3047 2.280797 GTTGGAGTCCGTGCTGCA 60.281 61.111 4.30 0.00 35.04 4.41
2446 3048 1.891919 GTTGGAGTCCGTGCTGCAA 60.892 57.895 2.77 6.37 41.33 4.08
2447 3049 1.891919 TTGGAGTCCGTGCTGCAAC 60.892 57.895 2.77 0.00 41.33 4.17
2448 3050 3.414700 GGAGTCCGTGCTGCAACG 61.415 66.667 2.77 10.63 43.20 4.10
2455 3057 3.339061 CGTGCTGCAACGGACTATA 57.661 52.632 2.77 0.00 39.89 1.31
2459 3061 3.458189 GTGCTGCAACGGACTATAATCT 58.542 45.455 2.77 0.00 0.00 2.40
2464 3066 6.596106 TGCTGCAACGGACTATAATCTTAAAA 59.404 34.615 0.00 0.00 0.00 1.52
2487 3089 8.417780 AAACATGATTCTCTTATGTCTCTTCG 57.582 34.615 0.00 0.00 34.18 3.79
2500 3102 6.861065 ATGTCTCTTCGAACTAAGCAAAAA 57.139 33.333 0.00 0.00 0.00 1.94
2555 3213 3.315191 TCTTGTTTTTAGGCACACTGAGC 59.685 43.478 0.00 0.00 0.00 4.26
2565 3223 2.031682 GGCACACTGAGCACAAAGTAAG 60.032 50.000 0.69 0.00 0.00 2.34
2566 3224 2.614057 GCACACTGAGCACAAAGTAAGT 59.386 45.455 0.00 0.00 0.00 2.24
2567 3225 3.807622 GCACACTGAGCACAAAGTAAGTA 59.192 43.478 0.00 0.00 0.00 2.24
2572 3238 6.365247 ACACTGAGCACAAAGTAAGTAATACG 59.635 38.462 0.00 0.00 39.62 3.06
2600 3266 1.054574 CACACACATGCAACAATCGC 58.945 50.000 0.00 0.00 0.00 4.58
2604 3270 2.796031 CACACATGCAACAATCGCTTTT 59.204 40.909 0.00 0.00 0.00 2.27
2605 3271 2.796031 ACACATGCAACAATCGCTTTTG 59.204 40.909 0.00 0.00 0.00 2.44
2606 3272 3.051327 CACATGCAACAATCGCTTTTGA 58.949 40.909 0.00 0.00 0.00 2.69
2666 3384 4.128643 ACAATTGGCCAAAGTGATGTTTG 58.871 39.130 29.63 24.02 37.30 2.93
2675 3393 4.327898 CCAAAGTGATGTTTGCATGCATAC 59.672 41.667 27.98 27.98 36.29 2.39
2678 3396 4.525996 AGTGATGTTTGCATGCATACCTA 58.474 39.130 30.29 18.02 35.07 3.08
2687 3405 8.310382 TGTTTGCATGCATACCTAAATTAACTT 58.690 29.630 30.29 0.00 0.00 2.66
2688 3406 9.150348 GTTTGCATGCATACCTAAATTAACTTT 57.850 29.630 25.43 0.00 0.00 2.66
2838 3566 7.876936 ACAACAGCTCATGAAATCATCTTAT 57.123 32.000 0.00 0.00 33.61 1.73
2933 3663 6.546428 TCAGTTTAAGAATGGAGGGACTAG 57.454 41.667 0.00 0.00 41.55 2.57
2934 3664 5.425539 TCAGTTTAAGAATGGAGGGACTAGG 59.574 44.000 0.00 0.00 41.55 3.02
2936 3666 5.425862 AGTTTAAGAATGGAGGGACTAGGTC 59.574 44.000 0.00 0.00 41.55 3.85
2962 4423 1.035139 CAAACAAGAGGCAAGCTGGT 58.965 50.000 0.00 0.00 0.00 4.00
3001 4473 4.848299 GTGAGCTTTGCACTTCGAATAAAG 59.152 41.667 0.00 8.78 33.57 1.85
3003 4475 4.072131 AGCTTTGCACTTCGAATAAAGGA 58.928 39.130 17.96 2.87 0.00 3.36
3205 4677 1.518572 CACTACCTAGTTGCGCCCG 60.519 63.158 4.18 0.00 33.46 6.13
3262 4734 3.919804 CCGCTAACATGTCCACAAATTTG 59.080 43.478 16.67 16.67 0.00 2.32
3274 4980 8.800370 TGTCCACAAATTTGATTATAGTAGCA 57.200 30.769 24.64 6.52 0.00 3.49
3280 4986 8.952278 ACAAATTTGATTATAGTAGCACGGAAA 58.048 29.630 24.64 0.00 0.00 3.13
3281 4987 9.781834 CAAATTTGATTATAGTAGCACGGAAAA 57.218 29.630 13.08 0.00 0.00 2.29
3771 5527 4.796495 GGCCGGCCGTGGAAGAAT 62.796 66.667 33.60 0.00 0.00 2.40
3873 5629 0.582482 CGCTCGACACGCTCTACTAT 59.418 55.000 0.00 0.00 0.00 2.12
3984 5740 1.494824 GCAACTTTACCGTCGACAGT 58.505 50.000 17.16 13.37 0.00 3.55
4044 5800 1.533625 CCTTCACCAGCGGATTGAAA 58.466 50.000 1.50 0.00 0.00 2.69
4167 5926 9.770097 ATATTGATAATGTGGTCTGACTACTTG 57.230 33.333 22.25 0.00 30.28 3.16
4176 5935 5.046520 GTGGTCTGACTACTTGGGATTACTT 60.047 44.000 15.98 0.00 0.00 2.24
4177 5936 6.154021 GTGGTCTGACTACTTGGGATTACTTA 59.846 42.308 15.98 0.00 0.00 2.24
4178 5937 6.901300 TGGTCTGACTACTTGGGATTACTTAT 59.099 38.462 7.85 0.00 0.00 1.73
4203 5962 1.353358 TGACTAGAGGTGGAAGGACGA 59.647 52.381 0.00 0.00 0.00 4.20
4223 5982 4.746115 ACGAACGTAAGCAACAATAACAGA 59.254 37.500 0.00 0.00 45.62 3.41
4369 6130 4.999950 ACATTTTGGTGCTTTGTTGTTTGA 59.000 33.333 0.00 0.00 0.00 2.69
4374 6135 3.055530 TGGTGCTTTGTTGTTTGACCATT 60.056 39.130 0.00 0.00 0.00 3.16
4425 6186 8.370493 ACATCTACATGTGTCATAAGTATTGC 57.630 34.615 9.11 0.00 42.05 3.56
4426 6187 7.986889 ACATCTACATGTGTCATAAGTATTGCA 59.013 33.333 9.11 0.00 42.05 4.08
4427 6188 7.770801 TCTACATGTGTCATAAGTATTGCAC 57.229 36.000 9.11 0.00 0.00 4.57
4428 6189 7.327214 TCTACATGTGTCATAAGTATTGCACA 58.673 34.615 9.11 0.00 40.42 4.57
4429 6190 7.986889 TCTACATGTGTCATAAGTATTGCACAT 59.013 33.333 9.11 0.00 44.98 3.21
4430 6191 7.019774 ACATGTGTCATAAGTATTGCACATC 57.980 36.000 0.00 0.00 43.11 3.06
4431 6192 6.825213 ACATGTGTCATAAGTATTGCACATCT 59.175 34.615 0.00 2.82 43.11 2.90
4432 6193 7.986889 ACATGTGTCATAAGTATTGCACATCTA 59.013 33.333 0.00 0.00 43.11 1.98
4433 6194 8.829612 CATGTGTCATAAGTATTGCACATCTAA 58.170 33.333 11.55 0.00 43.11 2.10
4434 6195 8.424274 TGTGTCATAAGTATTGCACATCTAAG 57.576 34.615 0.00 0.00 32.79 2.18
4435 6196 8.040727 TGTGTCATAAGTATTGCACATCTAAGT 58.959 33.333 0.00 0.00 32.79 2.24
4436 6197 8.543774 GTGTCATAAGTATTGCACATCTAAGTC 58.456 37.037 0.00 0.00 0.00 3.01
4437 6198 7.710907 TGTCATAAGTATTGCACATCTAAGTCC 59.289 37.037 0.00 0.00 0.00 3.85
4438 6199 7.928706 GTCATAAGTATTGCACATCTAAGTCCT 59.071 37.037 0.00 0.00 0.00 3.85
4439 6200 9.143155 TCATAAGTATTGCACATCTAAGTCCTA 57.857 33.333 0.00 0.00 0.00 2.94
4440 6201 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
4441 6202 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
4442 6203 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
4443 6204 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
4444 6205 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
4445 6206 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
4446 6207 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
4447 6208 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
4448 6209 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
4449 6210 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
4450 6211 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
4451 6212 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
4452 6213 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
4455 6216 9.421399 TCTAAGTCCTATGTCATTGATCTTACA 57.579 33.333 0.00 0.00 0.00 2.41
4458 6219 7.374272 AGTCCTATGTCATTGATCTTACATCG 58.626 38.462 0.00 0.00 34.54 3.84
4459 6220 7.231519 AGTCCTATGTCATTGATCTTACATCGA 59.768 37.037 0.00 0.00 34.54 3.59
4460 6221 7.540400 GTCCTATGTCATTGATCTTACATCGAG 59.460 40.741 0.00 0.00 34.54 4.04
4461 6222 7.448469 TCCTATGTCATTGATCTTACATCGAGA 59.552 37.037 0.00 0.00 34.54 4.04
4462 6223 8.249638 CCTATGTCATTGATCTTACATCGAGAT 58.750 37.037 0.00 0.00 36.60 2.75
4463 6224 9.636879 CTATGTCATTGATCTTACATCGAGATT 57.363 33.333 0.00 0.00 34.13 2.40
4464 6225 7.936950 TGTCATTGATCTTACATCGAGATTC 57.063 36.000 0.00 0.00 34.13 2.52
4465 6226 6.638468 TGTCATTGATCTTACATCGAGATTCG 59.362 38.462 0.00 0.00 42.10 3.34
4466 6227 6.638873 GTCATTGATCTTACATCGAGATTCGT 59.361 38.462 0.00 0.00 41.35 3.85
4467 6228 6.638468 TCATTGATCTTACATCGAGATTCGTG 59.362 38.462 0.00 0.05 41.35 4.35
4468 6229 5.500645 TGATCTTACATCGAGATTCGTGT 57.499 39.130 0.00 10.04 41.35 4.49
4469 6230 5.273944 TGATCTTACATCGAGATTCGTGTG 58.726 41.667 13.14 9.52 41.35 3.82
4470 6231 4.028852 TCTTACATCGAGATTCGTGTGG 57.971 45.455 13.14 8.45 41.35 4.17
4471 6232 3.692593 TCTTACATCGAGATTCGTGTGGA 59.307 43.478 13.14 9.84 41.35 4.02
4472 6233 4.338400 TCTTACATCGAGATTCGTGTGGAT 59.662 41.667 13.14 0.00 41.35 3.41
4473 6234 5.529800 TCTTACATCGAGATTCGTGTGGATA 59.470 40.000 13.14 0.00 41.35 2.59
4474 6235 4.649088 ACATCGAGATTCGTGTGGATAA 57.351 40.909 0.00 0.00 41.35 1.75
4475 6236 5.201713 ACATCGAGATTCGTGTGGATAAT 57.798 39.130 0.00 0.00 41.35 1.28
4476 6237 5.601662 ACATCGAGATTCGTGTGGATAATT 58.398 37.500 0.00 0.00 41.35 1.40
4477 6238 5.692204 ACATCGAGATTCGTGTGGATAATTC 59.308 40.000 0.00 0.00 41.35 2.17
4478 6239 5.515797 TCGAGATTCGTGTGGATAATTCT 57.484 39.130 0.00 0.00 41.35 2.40
4479 6240 5.902681 TCGAGATTCGTGTGGATAATTCTT 58.097 37.500 0.00 0.00 41.35 2.52
4480 6241 6.338146 TCGAGATTCGTGTGGATAATTCTTT 58.662 36.000 0.00 0.00 41.35 2.52
4481 6242 6.816640 TCGAGATTCGTGTGGATAATTCTTTT 59.183 34.615 0.00 0.00 41.35 2.27
4482 6243 7.333423 TCGAGATTCGTGTGGATAATTCTTTTT 59.667 33.333 0.00 0.00 41.35 1.94
4513 6274 9.683069 TCTTTTTCTTTTATGCTTGATTCACTC 57.317 29.630 0.00 0.00 0.00 3.51
4514 6275 9.467258 CTTTTTCTTTTATGCTTGATTCACTCA 57.533 29.630 0.00 0.00 0.00 3.41
4515 6276 8.801715 TTTTCTTTTATGCTTGATTCACTCAC 57.198 30.769 0.00 0.00 32.17 3.51
4516 6277 7.750229 TTCTTTTATGCTTGATTCACTCACT 57.250 32.000 0.00 0.00 32.17 3.41
4517 6278 7.750229 TCTTTTATGCTTGATTCACTCACTT 57.250 32.000 0.00 0.00 32.17 3.16
4518 6279 8.846943 TCTTTTATGCTTGATTCACTCACTTA 57.153 30.769 0.00 0.00 32.17 2.24
4519 6280 8.939929 TCTTTTATGCTTGATTCACTCACTTAG 58.060 33.333 0.00 0.00 32.17 2.18
4520 6281 8.846943 TTTTATGCTTGATTCACTCACTTAGA 57.153 30.769 0.00 0.00 32.17 2.10
4521 6282 9.453572 TTTTATGCTTGATTCACTCACTTAGAT 57.546 29.630 0.00 0.00 32.17 1.98
4522 6283 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
4523 6284 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
4524 6285 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
4525 6286 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
4526 6287 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
4527 6288 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
4528 6289 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
4529 6290 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
4530 6291 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
4531 6292 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
4532 6293 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
4533 6294 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
4534 6295 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
4535 6296 7.223582 CACTCACTTAGATGTGCAATAACTAGG 59.776 40.741 0.00 0.00 37.81 3.02
4536 6297 6.582636 TCACTTAGATGTGCAATAACTAGGG 58.417 40.000 0.00 0.00 37.81 3.53
4537 6298 5.237344 CACTTAGATGTGCAATAACTAGGGC 59.763 44.000 0.00 0.00 0.00 5.19
4538 6299 3.931907 AGATGTGCAATAACTAGGGCA 57.068 42.857 0.00 0.00 0.00 5.36
4543 6304 3.931907 TGCAATAACTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
4545 6306 4.960938 TGCAATAACTAGGGCACATCTAG 58.039 43.478 0.00 0.00 39.88 2.43
4546 6307 4.653801 TGCAATAACTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 38.02 2.43
4547 6308 5.307976 TGCAATAACTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 38.02 1.98
4548 6309 5.641209 GCAATAACTAGGGCACATCTAGATG 59.359 44.000 27.63 27.63 44.15 2.90
4562 6323 5.837437 CATCTAGATGTTCCCTAGACACAC 58.163 45.833 22.42 0.00 43.57 3.82
4563 6324 4.279145 TCTAGATGTTCCCTAGACACACC 58.721 47.826 0.00 0.00 38.08 4.16
4564 6325 2.188817 AGATGTTCCCTAGACACACCC 58.811 52.381 0.00 0.00 0.00 4.61
4565 6326 2.188817 GATGTTCCCTAGACACACCCT 58.811 52.381 0.00 0.00 0.00 4.34
4566 6327 3.012502 AGATGTTCCCTAGACACACCCTA 59.987 47.826 0.00 0.00 0.00 3.53
4567 6328 3.484953 TGTTCCCTAGACACACCCTAT 57.515 47.619 0.00 0.00 0.00 2.57
4568 6329 3.798515 TGTTCCCTAGACACACCCTATT 58.201 45.455 0.00 0.00 0.00 1.73
4569 6330 4.172807 TGTTCCCTAGACACACCCTATTT 58.827 43.478 0.00 0.00 0.00 1.40
4570 6331 4.600111 TGTTCCCTAGACACACCCTATTTT 59.400 41.667 0.00 0.00 0.00 1.82
4571 6332 5.786457 TGTTCCCTAGACACACCCTATTTTA 59.214 40.000 0.00 0.00 0.00 1.52
4572 6333 6.445786 TGTTCCCTAGACACACCCTATTTTAT 59.554 38.462 0.00 0.00 0.00 1.40
4573 6334 7.037153 TGTTCCCTAGACACACCCTATTTTATT 60.037 37.037 0.00 0.00 0.00 1.40
4574 6335 7.519347 TCCCTAGACACACCCTATTTTATTT 57.481 36.000 0.00 0.00 0.00 1.40
4618 6379 3.387050 ACCTATTACGTGAAGATCCACCC 59.613 47.826 0.00 0.00 33.67 4.61
4642 6403 3.307379 AGGCAAGTCCTTCGTGAAC 57.693 52.632 0.00 0.00 44.75 3.18
4652 6413 4.200287 TCGTGAACGATGGCCATG 57.800 55.556 26.56 17.71 44.22 3.66
4654 6415 0.739462 TCGTGAACGATGGCCATGAC 60.739 55.000 26.56 8.91 44.22 3.06
4666 6427 1.408266 GGCCATGACGGGTTAGACAAT 60.408 52.381 0.00 0.00 34.06 2.71
4693 6454 2.358737 CTGTGGACCCTTCGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
4720 6481 2.969238 CCATGGACTCGCGCATCC 60.969 66.667 18.49 18.49 35.37 3.51
4778 6539 2.551459 ACGTACGATAGCACCACCTATC 59.449 50.000 24.41 0.00 40.05 2.08
4786 6547 0.180406 GCACCACCTATCGGAACCAT 59.820 55.000 0.00 0.00 0.00 3.55
4812 6573 2.879103 AATCTTCGTGTCCCCATTGT 57.121 45.000 0.00 0.00 0.00 2.71
4819 6580 0.033366 GTGTCCCCATTGTGTTTGCC 59.967 55.000 0.00 0.00 0.00 4.52
4823 6584 1.047002 CCCCATTGTGTTTGCCTTCA 58.953 50.000 0.00 0.00 0.00 3.02
4833 6594 1.068588 GTTTGCCTTCACCAAACCCTC 59.931 52.381 5.87 0.00 43.74 4.30
4834 6595 0.555769 TTGCCTTCACCAAACCCTCT 59.444 50.000 0.00 0.00 0.00 3.69
4836 6597 0.402121 GCCTTCACCAAACCCTCTCT 59.598 55.000 0.00 0.00 0.00 3.10
4851 6612 5.805728 ACCCTCTCTTTTACTTACATGTGG 58.194 41.667 9.11 3.79 0.00 4.17
4853 6614 6.109359 CCCTCTCTTTTACTTACATGTGGAG 58.891 44.000 9.11 8.99 0.00 3.86
4891 6652 5.277876 GCTGCTATACTCTTAGACTTGCGTA 60.278 44.000 0.00 0.00 0.00 4.42
4946 6707 8.458843 TGCTAAAATCTGCCTACAACTAAAATC 58.541 33.333 0.00 0.00 0.00 2.17
4947 6708 8.458843 GCTAAAATCTGCCTACAACTAAAATCA 58.541 33.333 0.00 0.00 0.00 2.57
4995 6756 5.148502 TCAAGTAGTCTAATCATCCCCCTC 58.851 45.833 0.00 0.00 0.00 4.30
4997 6758 5.426325 AGTAGTCTAATCATCCCCCTCTT 57.574 43.478 0.00 0.00 0.00 2.85
5012 6773 4.372656 CCCCTCTTGACATACTTTCGATC 58.627 47.826 0.00 0.00 0.00 3.69
5020 6781 6.769134 TGACATACTTTCGATCCTACAAGA 57.231 37.500 0.00 0.00 0.00 3.02
5026 6787 6.394025 ACTTTCGATCCTACAAGAGGTATC 57.606 41.667 0.00 0.00 46.76 2.24
5035 6796 5.127845 TCCTACAAGAGGTATCAGAGCTTTG 59.872 44.000 0.00 0.00 46.76 2.77
5040 6801 4.100373 AGAGGTATCAGAGCTTTGGTCTT 58.900 43.478 4.15 0.00 38.40 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.026513 GGTTGATGTAGTAGTACGTCTTCAC 58.973 44.000 23.99 18.31 43.23 3.18
9 10 5.163824 CGGTTGATGTAGTAGTACGTCTTCA 60.164 44.000 23.99 12.44 43.23 3.02
10 11 5.261661 CGGTTGATGTAGTAGTACGTCTTC 58.738 45.833 23.99 17.66 43.23 2.87
11 12 4.437930 GCGGTTGATGTAGTAGTACGTCTT 60.438 45.833 23.99 2.68 43.23 3.01
12 13 3.064545 GCGGTTGATGTAGTAGTACGTCT 59.935 47.826 23.99 4.67 43.23 4.18
13 14 3.357897 GCGGTTGATGTAGTAGTACGTC 58.642 50.000 19.17 19.17 43.16 4.34
14 15 2.223112 CGCGGTTGATGTAGTAGTACGT 60.223 50.000 0.00 1.91 30.95 3.57
15 16 2.223112 ACGCGGTTGATGTAGTAGTACG 60.223 50.000 12.47 0.00 30.95 3.67
16 17 3.411415 ACGCGGTTGATGTAGTAGTAC 57.589 47.619 12.47 0.37 0.00 2.73
17 18 3.191162 ACAACGCGGTTGATGTAGTAGTA 59.809 43.478 22.26 0.00 45.28 1.82
18 19 2.029649 ACAACGCGGTTGATGTAGTAGT 60.030 45.455 22.26 0.00 45.28 2.73
19 20 2.597305 GACAACGCGGTTGATGTAGTAG 59.403 50.000 22.26 0.00 45.28 2.57
20 21 2.030096 TGACAACGCGGTTGATGTAGTA 60.030 45.455 22.26 4.28 45.28 1.82
21 22 1.269883 TGACAACGCGGTTGATGTAGT 60.270 47.619 22.26 4.69 45.28 2.73
22 23 1.424403 TGACAACGCGGTTGATGTAG 58.576 50.000 22.26 1.41 45.28 2.74
23 24 2.087501 ATGACAACGCGGTTGATGTA 57.912 45.000 22.26 9.68 45.28 2.29
24 25 2.087501 TATGACAACGCGGTTGATGT 57.912 45.000 22.26 13.84 45.28 3.06
25 26 2.769376 GTTATGACAACGCGGTTGATG 58.231 47.619 22.26 11.18 45.28 3.07
26 27 1.392168 CGTTATGACAACGCGGTTGAT 59.608 47.619 22.26 12.10 45.28 2.57
27 28 0.785378 CGTTATGACAACGCGGTTGA 59.215 50.000 22.26 6.79 45.28 3.18
34 35 3.850207 CGGAAGCGTTATGACAACG 57.150 52.632 5.22 5.22 45.56 4.10
51 52 2.403987 CCTCGTAGACCGACAGCG 59.596 66.667 0.00 0.00 41.60 5.18
52 53 0.745845 TACCCTCGTAGACCGACAGC 60.746 60.000 0.00 0.00 41.60 4.40
53 54 1.012841 GTACCCTCGTAGACCGACAG 58.987 60.000 0.00 0.00 41.60 3.51
54 55 0.740868 CGTACCCTCGTAGACCGACA 60.741 60.000 0.00 0.00 41.60 4.35
55 56 0.741221 ACGTACCCTCGTAGACCGAC 60.741 60.000 0.00 0.00 41.60 4.79
56 57 0.821517 TACGTACCCTCGTAGACCGA 59.178 55.000 0.00 0.00 45.00 4.69
57 58 3.362581 TACGTACCCTCGTAGACCG 57.637 57.895 0.00 0.00 43.80 4.79
62 63 3.447586 AGTGTAGTCTACGTACCCTCGTA 59.552 47.826 5.55 0.00 43.80 3.43
63 64 2.234908 AGTGTAGTCTACGTACCCTCGT 59.765 50.000 5.55 0.00 45.97 4.18
64 65 2.863137 GAGTGTAGTCTACGTACCCTCG 59.137 54.545 5.55 0.00 0.00 4.63
65 66 4.119136 GAGAGTGTAGTCTACGTACCCTC 58.881 52.174 5.55 1.70 0.00 4.30
66 67 3.118445 GGAGAGTGTAGTCTACGTACCCT 60.118 52.174 5.55 0.00 0.00 4.34
67 68 3.202097 GGAGAGTGTAGTCTACGTACCC 58.798 54.545 5.55 0.16 0.00 3.69
68 69 3.202097 GGGAGAGTGTAGTCTACGTACC 58.798 54.545 5.55 4.74 0.00 3.34
69 70 3.118445 AGGGGAGAGTGTAGTCTACGTAC 60.118 52.174 5.55 0.00 0.00 3.67
70 71 3.110705 AGGGGAGAGTGTAGTCTACGTA 58.889 50.000 5.55 0.00 0.00 3.57
71 72 1.914798 AGGGGAGAGTGTAGTCTACGT 59.085 52.381 5.55 0.00 0.00 3.57
72 73 2.171027 AGAGGGGAGAGTGTAGTCTACG 59.829 54.545 5.55 0.00 0.00 3.51
73 74 3.742013 CGAGAGGGGAGAGTGTAGTCTAC 60.742 56.522 2.81 2.81 0.00 2.59
74 75 2.435069 CGAGAGGGGAGAGTGTAGTCTA 59.565 54.545 0.00 0.00 0.00 2.59
75 76 1.210967 CGAGAGGGGAGAGTGTAGTCT 59.789 57.143 0.00 0.00 0.00 3.24
76 77 1.065272 ACGAGAGGGGAGAGTGTAGTC 60.065 57.143 0.00 0.00 0.00 2.59
77 78 0.993470 ACGAGAGGGGAGAGTGTAGT 59.007 55.000 0.00 0.00 0.00 2.73
78 79 1.746220 CAACGAGAGGGGAGAGTGTAG 59.254 57.143 0.00 0.00 0.00 2.74
79 80 1.075050 ACAACGAGAGGGGAGAGTGTA 59.925 52.381 0.00 0.00 0.00 2.90
80 81 0.178958 ACAACGAGAGGGGAGAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
81 82 0.528470 GACAACGAGAGGGGAGAGTG 59.472 60.000 0.00 0.00 0.00 3.51
82 83 0.112606 TGACAACGAGAGGGGAGAGT 59.887 55.000 0.00 0.00 0.00 3.24
83 84 1.135915 CATGACAACGAGAGGGGAGAG 59.864 57.143 0.00 0.00 0.00 3.20
84 85 1.186200 CATGACAACGAGAGGGGAGA 58.814 55.000 0.00 0.00 0.00 3.71
85 86 0.460987 GCATGACAACGAGAGGGGAG 60.461 60.000 0.00 0.00 0.00 4.30
86 87 1.191489 TGCATGACAACGAGAGGGGA 61.191 55.000 0.00 0.00 0.00 4.81
87 88 0.107508 ATGCATGACAACGAGAGGGG 60.108 55.000 0.00 0.00 0.00 4.79
88 89 1.293924 GATGCATGACAACGAGAGGG 58.706 55.000 2.46 0.00 0.00 4.30
89 90 1.662629 GTGATGCATGACAACGAGAGG 59.337 52.381 11.72 0.00 0.00 3.69
90 91 1.662629 GGTGATGCATGACAACGAGAG 59.337 52.381 18.25 0.00 0.00 3.20
91 92 1.001860 TGGTGATGCATGACAACGAGA 59.998 47.619 18.25 0.00 0.00 4.04
92 93 1.441738 TGGTGATGCATGACAACGAG 58.558 50.000 18.25 0.00 0.00 4.18
93 94 1.738908 CATGGTGATGCATGACAACGA 59.261 47.619 18.25 2.53 0.00 3.85
94 95 1.738908 TCATGGTGATGCATGACAACG 59.261 47.619 18.25 0.00 33.41 4.10
95 96 3.630769 AGATCATGGTGATGCATGACAAC 59.369 43.478 18.25 7.54 40.16 3.32
96 97 3.893521 AGATCATGGTGATGCATGACAA 58.106 40.909 18.25 7.30 40.16 3.18
97 98 3.570912 AGATCATGGTGATGCATGACA 57.429 42.857 18.25 7.74 40.16 3.58
98 99 3.550233 GCAAGATCATGGTGATGCATGAC 60.550 47.826 2.46 5.60 40.16 3.06
99 100 2.621526 GCAAGATCATGGTGATGCATGA 59.378 45.455 2.46 0.00 37.20 3.07
100 101 2.604614 CGCAAGATCATGGTGATGCATG 60.605 50.000 2.46 0.00 37.20 4.06
101 102 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
102 103 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
103 104 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
104 105 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
105 106 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
106 107 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
107 108 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
108 109 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
109 110 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
110 111 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
111 112 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
112 113 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
113 114 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
114 115 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
115 116 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
116 117 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
117 118 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
118 119 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
119 120 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
136 137 8.866970 ATAGGGGAACGTAGTAATTTCAAAAA 57.133 30.769 0.00 0.00 45.00 1.94
137 138 9.603921 CTATAGGGGAACGTAGTAATTTCAAAA 57.396 33.333 0.00 0.00 45.00 2.44
138 139 7.712205 GCTATAGGGGAACGTAGTAATTTCAAA 59.288 37.037 1.04 0.00 45.00 2.69
139 140 7.212274 GCTATAGGGGAACGTAGTAATTTCAA 58.788 38.462 1.04 0.00 45.00 2.69
140 141 6.515531 CGCTATAGGGGAACGTAGTAATTTCA 60.516 42.308 8.91 0.00 45.00 2.69
141 142 5.860716 CGCTATAGGGGAACGTAGTAATTTC 59.139 44.000 8.91 0.00 45.00 2.17
142 143 5.536161 TCGCTATAGGGGAACGTAGTAATTT 59.464 40.000 16.09 0.00 45.00 1.82
143 144 5.072741 TCGCTATAGGGGAACGTAGTAATT 58.927 41.667 16.09 0.00 45.00 1.40
144 145 4.655963 TCGCTATAGGGGAACGTAGTAAT 58.344 43.478 16.09 0.00 45.00 1.89
145 146 4.067896 CTCGCTATAGGGGAACGTAGTAA 58.932 47.826 16.09 0.00 45.00 2.24
146 147 3.557898 CCTCGCTATAGGGGAACGTAGTA 60.558 52.174 16.09 0.00 32.98 1.82
147 148 2.813354 CCTCGCTATAGGGGAACGTAGT 60.813 54.545 16.09 0.00 35.75 2.73
148 149 1.811359 CCTCGCTATAGGGGAACGTAG 59.189 57.143 16.09 5.62 36.45 3.51
149 150 1.901591 CCTCGCTATAGGGGAACGTA 58.098 55.000 16.09 0.00 36.45 3.57
150 151 2.729692 CCTCGCTATAGGGGAACGT 58.270 57.895 16.09 0.00 36.45 3.99
183 184 0.463295 TGAAAAACGTACCCACCGCA 60.463 50.000 0.00 0.00 0.00 5.69
187 188 1.528161 CGACCTGAAAAACGTACCCAC 59.472 52.381 0.00 0.00 0.00 4.61
189 190 2.153366 TCGACCTGAAAAACGTACCC 57.847 50.000 0.00 0.00 0.00 3.69
199 200 0.109272 GACTGCACGATCGACCTGAA 60.109 55.000 24.34 3.07 0.00 3.02
214 215 1.843368 AGCATGAAACCCCATGACTG 58.157 50.000 7.94 0.00 44.98 3.51
303 305 7.414436 TGCCTTGTCGAATAATTAAGCATAAC 58.586 34.615 0.00 0.00 0.00 1.89
317 319 3.068024 AGCAAAAGATTTGCCTTGTCGAA 59.932 39.130 20.66 0.00 45.98 3.71
322 324 2.733026 CGGAAGCAAAAGATTTGCCTTG 59.267 45.455 20.66 7.95 45.98 3.61
452 454 9.428097 AGATGCTTCCATTTCTTTTCATTTTAC 57.572 29.630 0.00 0.00 0.00 2.01
463 470 7.332678 GCAAAAATGTAAGATGCTTCCATTTCT 59.667 33.333 9.96 0.00 35.35 2.52
487 497 8.060931 TGTTACTTGGCAAATAGATTTATGCA 57.939 30.769 0.00 0.00 0.00 3.96
500 510 7.753309 ACATTGTAGTATTGTTACTTGGCAA 57.247 32.000 0.00 0.00 39.42 4.52
554 567 1.785041 CGGTTGGCCTGACTTGTGTG 61.785 60.000 3.32 0.00 0.00 3.82
592 607 3.244981 ACGGCTTGGGTTGACCTATTTTA 60.245 43.478 0.00 0.00 41.11 1.52
593 608 2.167662 CGGCTTGGGTTGACCTATTTT 58.832 47.619 0.00 0.00 41.11 1.82
594 609 1.074889 ACGGCTTGGGTTGACCTATTT 59.925 47.619 0.00 0.00 41.11 1.40
595 610 0.696501 ACGGCTTGGGTTGACCTATT 59.303 50.000 0.00 0.00 41.11 1.73
596 611 0.696501 AACGGCTTGGGTTGACCTAT 59.303 50.000 0.00 0.00 41.11 2.57
597 612 0.475044 AAACGGCTTGGGTTGACCTA 59.525 50.000 0.00 0.00 41.11 3.08
878 923 1.799181 CGCTTCACGGTGATCTACTGG 60.799 57.143 12.26 0.00 40.13 4.00
891 936 0.373024 GAAGATGAGCAGCGCTTCAC 59.627 55.000 13.76 5.70 39.88 3.18
898 943 6.683974 TTTTTATAGGTGAAGATGAGCAGC 57.316 37.500 0.00 0.00 0.00 5.25
932 977 0.752658 TGGTGATCGATAGGCACTGG 59.247 55.000 13.52 0.00 41.52 4.00
1470 1525 3.755628 CCACGGTCCGACCACGAT 61.756 66.667 20.51 0.00 38.47 3.73
1533 1588 1.537638 GTGAAGAGTGACAGCGAGAGA 59.462 52.381 0.00 0.00 0.00 3.10
1545 1600 1.687612 CCATGCCCTGGTGAAGAGT 59.312 57.895 0.00 0.00 40.49 3.24
1668 1744 1.454111 CCGGACCATCTCCTCGTCT 60.454 63.158 0.00 0.00 36.80 4.18
1689 1765 4.256180 GGCCCCTCGATCGCCATT 62.256 66.667 11.09 0.00 42.52 3.16
1956 2032 2.449518 TGGAAGGTGGTCCAGCCA 60.450 61.111 17.55 7.91 42.97 4.75
2014 2098 7.338196 TCTTTTCACCAAGAAAGTAATGTGTCA 59.662 33.333 0.00 0.00 46.24 3.58
2034 2118 6.347110 GTTGTCAACGATTGCATTTCTTTTC 58.653 36.000 0.00 0.00 0.00 2.29
2062 2146 5.116180 TGAAGTGTTCGATGTGTTTCTCTT 58.884 37.500 0.00 0.00 0.00 2.85
2167 2755 5.374071 CGGCCTCCTATATTGGTAAAAAGT 58.626 41.667 0.00 0.00 0.00 2.66
2177 2765 0.977395 GAGCACCGGCCTCCTATATT 59.023 55.000 0.00 0.00 42.56 1.28
2189 2777 1.129251 CACTGCAAATGTAGAGCACCG 59.871 52.381 5.49 0.00 34.13 4.94
2213 2801 8.966155 TTTTGAGATACCTATTTCCCCTTTTT 57.034 30.769 0.00 0.00 0.00 1.94
2214 2802 8.966155 TTTTTGAGATACCTATTTCCCCTTTT 57.034 30.769 0.00 0.00 0.00 2.27
2237 2825 6.726299 CCTATTTCCCCCTTCTTCTTCTTTTT 59.274 38.462 0.00 0.00 0.00 1.94
2238 2826 6.183361 ACCTATTTCCCCCTTCTTCTTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
2239 2827 5.316183 ACCTATTTCCCCCTTCTTCTTCTTT 59.684 40.000 0.00 0.00 0.00 2.52
2240 2828 4.858519 ACCTATTTCCCCCTTCTTCTTCTT 59.141 41.667 0.00 0.00 0.00 2.52
2241 2829 4.449389 ACCTATTTCCCCCTTCTTCTTCT 58.551 43.478 0.00 0.00 0.00 2.85
2242 2830 4.864483 ACCTATTTCCCCCTTCTTCTTC 57.136 45.455 0.00 0.00 0.00 2.87
2243 2831 4.606255 TGAACCTATTTCCCCCTTCTTCTT 59.394 41.667 0.00 0.00 32.58 2.52
2244 2832 4.183916 TGAACCTATTTCCCCCTTCTTCT 58.816 43.478 0.00 0.00 32.58 2.85
2245 2833 4.586306 TGAACCTATTTCCCCCTTCTTC 57.414 45.455 0.00 0.00 32.58 2.87
2294 2888 9.353999 CTAGCTAATCCAAAATTTGTAACCAAC 57.646 33.333 4.92 0.00 0.00 3.77
2393 2995 7.453126 TGAAAGAAAAAGAAGGGCCACATATTA 59.547 33.333 6.18 0.00 0.00 0.98
2426 3028 2.607892 GCAGCACGGACTCCAACAC 61.608 63.158 0.00 0.00 0.00 3.32
2427 3029 2.280797 GCAGCACGGACTCCAACA 60.281 61.111 0.00 0.00 0.00 3.33
2428 3030 1.891919 TTGCAGCACGGACTCCAAC 60.892 57.895 0.00 0.00 0.00 3.77
2429 3031 1.891919 GTTGCAGCACGGACTCCAA 60.892 57.895 0.00 0.00 0.00 3.53
2430 3032 2.280797 GTTGCAGCACGGACTCCA 60.281 61.111 0.00 0.00 0.00 3.86
2431 3033 3.414700 CGTTGCAGCACGGACTCC 61.415 66.667 0.00 0.00 36.47 3.85
2437 3039 1.635844 TTATAGTCCGTTGCAGCACG 58.364 50.000 3.92 3.92 40.02 5.34
2438 3040 3.458189 AGATTATAGTCCGTTGCAGCAC 58.542 45.455 0.00 0.00 0.00 4.40
2439 3041 3.819564 AGATTATAGTCCGTTGCAGCA 57.180 42.857 0.24 0.00 0.00 4.41
2440 3042 6.598753 TTTAAGATTATAGTCCGTTGCAGC 57.401 37.500 0.00 0.00 0.00 5.25
2441 3043 7.970384 TGTTTTAAGATTATAGTCCGTTGCAG 58.030 34.615 0.00 0.00 0.00 4.41
2442 3044 7.908827 TGTTTTAAGATTATAGTCCGTTGCA 57.091 32.000 0.00 0.00 0.00 4.08
2443 3045 8.609176 TCATGTTTTAAGATTATAGTCCGTTGC 58.391 33.333 0.00 0.00 0.00 4.17
2464 3066 7.340122 TCGAAGAGACATAAGAGAATCATGT 57.660 36.000 0.00 0.00 37.82 3.21
2475 3077 7.956420 TTTTGCTTAGTTCGAAGAGACATAA 57.044 32.000 0.00 0.28 38.43 1.90
2476 3078 7.956420 TTTTTGCTTAGTTCGAAGAGACATA 57.044 32.000 0.00 0.00 38.43 2.29
2509 3111 9.436957 AGAAGAACAAAACTGAATACGATGTAT 57.563 29.630 0.00 0.00 0.00 2.29
2510 3112 8.827177 AGAAGAACAAAACTGAATACGATGTA 57.173 30.769 0.00 0.00 0.00 2.29
2511 3113 7.730364 AGAAGAACAAAACTGAATACGATGT 57.270 32.000 0.00 0.00 0.00 3.06
2512 3114 8.070171 ACAAGAAGAACAAAACTGAATACGATG 58.930 33.333 0.00 0.00 0.00 3.84
2513 3115 8.154649 ACAAGAAGAACAAAACTGAATACGAT 57.845 30.769 0.00 0.00 0.00 3.73
2514 3116 7.548196 ACAAGAAGAACAAAACTGAATACGA 57.452 32.000 0.00 0.00 0.00 3.43
2515 3117 8.614994 AAACAAGAAGAACAAAACTGAATACG 57.385 30.769 0.00 0.00 0.00 3.06
2520 3122 7.544217 GCCTAAAAACAAGAAGAACAAAACTGA 59.456 33.333 0.00 0.00 0.00 3.41
2521 3123 7.330700 TGCCTAAAAACAAGAAGAACAAAACTG 59.669 33.333 0.00 0.00 0.00 3.16
2524 3126 7.117092 GTGTGCCTAAAAACAAGAAGAACAAAA 59.883 33.333 0.00 0.00 0.00 2.44
2525 3127 6.588373 GTGTGCCTAAAAACAAGAAGAACAAA 59.412 34.615 0.00 0.00 0.00 2.83
2529 3187 5.650266 TCAGTGTGCCTAAAAACAAGAAGAA 59.350 36.000 0.00 0.00 0.00 2.52
2555 3213 5.302711 CGTGTGCGTATTACTTACTTTGTG 58.697 41.667 0.00 0.00 0.00 3.33
2572 3238 1.655046 CATGTGTGTGTGCGTGTGC 60.655 57.895 0.00 0.00 43.20 4.57
2625 3343 9.964303 CCAATTGTAAATAATTCAATCATCCGA 57.036 29.630 4.43 0.00 32.39 4.55
2666 3384 7.973388 TGTGAAAGTTAATTTAGGTATGCATGC 59.027 33.333 11.82 11.82 0.00 4.06
2687 3405 6.985059 TGCAAAGTTTCATGATGAAATGTGAA 59.015 30.769 21.91 12.72 46.55 3.18
2688 3406 6.514063 TGCAAAGTTTCATGATGAAATGTGA 58.486 32.000 21.91 6.77 46.55 3.58
2803 3531 3.753842 TGAGCTGTTGTTTTCGTGAAAC 58.246 40.909 0.00 9.26 46.28 2.78
2905 3635 7.730332 AGTCCCTCCATTCTTAAACTGATTTTT 59.270 33.333 0.00 0.00 0.00 1.94
2934 3664 1.464997 GCCTCTTGTTTGGTCATCGAC 59.535 52.381 0.00 0.00 0.00 4.20
2936 3666 1.522668 TGCCTCTTGTTTGGTCATCG 58.477 50.000 0.00 0.00 0.00 3.84
2962 4423 3.009033 AGCTCACAAATGCCCACTAGTTA 59.991 43.478 0.00 0.00 0.00 2.24
3001 4473 8.293699 AGTGACACTCCCATTTTATATTTTCC 57.706 34.615 1.07 0.00 0.00 3.13
3003 4475 8.903820 GCTAGTGACACTCCCATTTTATATTTT 58.096 33.333 12.39 0.00 0.00 1.82
3022 4494 2.423898 GGGCACGCCTAGCTAGTGA 61.424 63.158 19.31 0.00 38.06 3.41
3237 4709 2.093306 TGTGGACATGTTAGCGGAAG 57.907 50.000 0.00 0.00 0.00 3.46
3579 5335 0.689623 AGAAGGTGCAGTCCTGGAAG 59.310 55.000 0.00 0.00 37.93 3.46
3771 5527 3.902162 GACCACCGTGCGCGAGTAA 62.902 63.158 23.45 0.00 41.33 2.24
3837 5593 3.782443 GCGAAGTCCCCGGACCAT 61.782 66.667 0.73 0.00 45.59 3.55
3873 5629 0.319211 CGGAGTTGTTGTACTCGGCA 60.319 55.000 0.00 0.00 44.38 5.69
3984 5740 3.012119 TTGCCCCCGAGCACCATA 61.012 61.111 0.00 0.00 43.97 2.74
4149 5908 3.248024 TCCCAAGTAGTCAGACCACATT 58.752 45.455 1.74 0.00 0.00 2.71
4176 5935 7.610692 CGTCCTTCCACCTCTAGTCATATAATA 59.389 40.741 0.00 0.00 0.00 0.98
4177 5936 6.434652 CGTCCTTCCACCTCTAGTCATATAAT 59.565 42.308 0.00 0.00 0.00 1.28
4178 5937 5.768662 CGTCCTTCCACCTCTAGTCATATAA 59.231 44.000 0.00 0.00 0.00 0.98
4186 5945 1.132643 CGTTCGTCCTTCCACCTCTAG 59.867 57.143 0.00 0.00 0.00 2.43
4203 5962 7.386848 ACTGTATCTGTTATTGTTGCTTACGTT 59.613 33.333 0.00 0.00 0.00 3.99
4223 5982 5.724328 CAGATCCACACAACACTACTGTAT 58.276 41.667 0.00 0.00 0.00 2.29
4285 6045 6.165659 ACTTTATCTCATTGTTACACACGC 57.834 37.500 0.00 0.00 0.00 5.34
4400 6161 7.986889 TGCAATACTTATGACACATGTAGATGT 59.013 33.333 0.00 0.00 44.08 3.06
4401 6162 8.278408 GTGCAATACTTATGACACATGTAGATG 58.722 37.037 0.00 0.00 35.49 2.90
4402 6163 7.986889 TGTGCAATACTTATGACACATGTAGAT 59.013 33.333 0.00 0.00 33.26 1.98
4403 6164 7.327214 TGTGCAATACTTATGACACATGTAGA 58.673 34.615 0.00 0.00 33.26 2.59
4404 6165 7.538303 TGTGCAATACTTATGACACATGTAG 57.462 36.000 0.00 0.00 33.26 2.74
4405 6166 7.986889 AGATGTGCAATACTTATGACACATGTA 59.013 33.333 16.44 0.00 41.31 2.29
4406 6167 6.825213 AGATGTGCAATACTTATGACACATGT 59.175 34.615 16.44 12.17 41.31 3.21
4407 6168 7.255491 AGATGTGCAATACTTATGACACATG 57.745 36.000 16.44 0.00 41.31 3.21
4408 6169 8.962884 TTAGATGTGCAATACTTATGACACAT 57.037 30.769 13.39 13.39 42.56 3.21
4409 6170 8.040727 ACTTAGATGTGCAATACTTATGACACA 58.959 33.333 0.00 0.00 38.34 3.72
4410 6171 8.425577 ACTTAGATGTGCAATACTTATGACAC 57.574 34.615 0.00 0.00 0.00 3.67
4411 6172 7.710907 GGACTTAGATGTGCAATACTTATGACA 59.289 37.037 0.00 0.00 0.00 3.58
4412 6173 7.928706 AGGACTTAGATGTGCAATACTTATGAC 59.071 37.037 0.00 0.00 0.00 3.06
4413 6174 8.023021 AGGACTTAGATGTGCAATACTTATGA 57.977 34.615 0.00 0.00 0.00 2.15
4414 6175 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
4415 6176 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
4416 6177 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
4417 6178 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
4418 6179 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
4419 6180 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
4420 6181 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
4421 6182 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
4422 6183 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
4423 6184 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
4424 6185 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
4425 6186 8.366401 AGATCAATGACATAGGACTTAGATGTG 58.634 37.037 0.00 0.00 33.99 3.21
4426 6187 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
4429 6190 9.421399 TGTAAGATCAATGACATAGGACTTAGA 57.579 33.333 0.00 0.00 0.00 2.10
4432 6193 7.869937 CGATGTAAGATCAATGACATAGGACTT 59.130 37.037 0.00 0.00 32.75 3.01
4433 6194 7.231519 TCGATGTAAGATCAATGACATAGGACT 59.768 37.037 0.00 0.00 32.75 3.85
4434 6195 7.371159 TCGATGTAAGATCAATGACATAGGAC 58.629 38.462 0.00 0.00 32.75 3.85
4435 6196 7.448469 TCTCGATGTAAGATCAATGACATAGGA 59.552 37.037 0.00 0.00 32.75 2.94
4436 6197 7.597386 TCTCGATGTAAGATCAATGACATAGG 58.403 38.462 0.00 0.00 32.75 2.57
4437 6198 9.636879 AATCTCGATGTAAGATCAATGACATAG 57.363 33.333 0.00 0.00 32.29 2.23
4438 6199 9.631452 GAATCTCGATGTAAGATCAATGACATA 57.369 33.333 0.00 0.00 32.29 2.29
4439 6200 7.328005 CGAATCTCGATGTAAGATCAATGACAT 59.672 37.037 0.00 0.00 43.74 3.06
4440 6201 6.638468 CGAATCTCGATGTAAGATCAATGACA 59.362 38.462 0.00 0.00 43.74 3.58
4441 6202 6.638873 ACGAATCTCGATGTAAGATCAATGAC 59.361 38.462 2.59 0.00 43.74 3.06
4442 6203 6.638468 CACGAATCTCGATGTAAGATCAATGA 59.362 38.462 2.59 0.00 43.74 2.57
4443 6204 6.419116 ACACGAATCTCGATGTAAGATCAATG 59.581 38.462 2.59 0.00 43.74 2.82
4444 6205 6.419116 CACACGAATCTCGATGTAAGATCAAT 59.581 38.462 2.59 0.00 43.74 2.57
4445 6206 5.743872 CACACGAATCTCGATGTAAGATCAA 59.256 40.000 2.59 0.00 43.74 2.57
4446 6207 5.273944 CACACGAATCTCGATGTAAGATCA 58.726 41.667 2.59 0.00 43.74 2.92
4447 6208 4.677378 CCACACGAATCTCGATGTAAGATC 59.323 45.833 2.59 0.00 43.74 2.75
4448 6209 4.338400 TCCACACGAATCTCGATGTAAGAT 59.662 41.667 2.59 0.00 43.74 2.40
4449 6210 3.692593 TCCACACGAATCTCGATGTAAGA 59.307 43.478 2.59 2.58 43.74 2.10
4450 6211 4.028852 TCCACACGAATCTCGATGTAAG 57.971 45.455 2.59 0.59 43.74 2.34
4451 6212 4.649088 ATCCACACGAATCTCGATGTAA 57.351 40.909 2.59 0.00 43.74 2.41
4452 6213 5.761165 TTATCCACACGAATCTCGATGTA 57.239 39.130 2.59 0.00 43.74 2.29
4453 6214 4.649088 TTATCCACACGAATCTCGATGT 57.351 40.909 2.59 1.35 43.74 3.06
4454 6215 5.923114 AGAATTATCCACACGAATCTCGATG 59.077 40.000 2.59 1.16 43.74 3.84
4455 6216 6.090483 AGAATTATCCACACGAATCTCGAT 57.910 37.500 2.59 0.00 43.74 3.59
4456 6217 5.515797 AGAATTATCCACACGAATCTCGA 57.484 39.130 2.59 0.00 43.74 4.04
4457 6218 6.589830 AAAGAATTATCCACACGAATCTCG 57.410 37.500 0.00 0.00 46.93 4.04
4487 6248 9.683069 GAGTGAATCAAGCATAAAAGAAAAAGA 57.317 29.630 0.00 0.00 0.00 2.52
4488 6249 9.467258 TGAGTGAATCAAGCATAAAAGAAAAAG 57.533 29.630 0.00 0.00 34.02 2.27
4489 6250 9.248291 GTGAGTGAATCAAGCATAAAAGAAAAA 57.752 29.630 0.00 0.00 40.43 1.94
4490 6251 8.632679 AGTGAGTGAATCAAGCATAAAAGAAAA 58.367 29.630 0.00 0.00 40.43 2.29
4491 6252 8.169977 AGTGAGTGAATCAAGCATAAAAGAAA 57.830 30.769 0.00 0.00 40.43 2.52
4492 6253 7.750229 AGTGAGTGAATCAAGCATAAAAGAA 57.250 32.000 0.00 0.00 40.43 2.52
4493 6254 7.750229 AAGTGAGTGAATCAAGCATAAAAGA 57.250 32.000 0.00 0.00 40.43 2.52
4494 6255 8.939929 TCTAAGTGAGTGAATCAAGCATAAAAG 58.060 33.333 0.00 0.00 40.43 2.27
4495 6256 8.846943 TCTAAGTGAGTGAATCAAGCATAAAA 57.153 30.769 0.00 0.00 40.43 1.52
4496 6257 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
4497 6258 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
4498 6259 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
4499 6260 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
4500 6261 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
4501 6262 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
4502 6263 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
4503 6264 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
4504 6265 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
4505 6266 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
4506 6267 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
4507 6268 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
4508 6269 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
4509 6270 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
4510 6271 7.268586 CCTAGTTATTGCACATCTAAGTGAGT 58.731 38.462 0.00 0.00 42.05 3.41
4511 6272 6.703607 CCCTAGTTATTGCACATCTAAGTGAG 59.296 42.308 0.00 0.00 42.05 3.51
4512 6273 6.582636 CCCTAGTTATTGCACATCTAAGTGA 58.417 40.000 0.00 0.00 42.05 3.41
4513 6274 5.237344 GCCCTAGTTATTGCACATCTAAGTG 59.763 44.000 0.00 0.00 42.37 3.16
4514 6275 5.104527 TGCCCTAGTTATTGCACATCTAAGT 60.105 40.000 0.00 0.00 0.00 2.24
4515 6276 5.368145 TGCCCTAGTTATTGCACATCTAAG 58.632 41.667 0.00 0.00 0.00 2.18
4516 6277 5.366482 TGCCCTAGTTATTGCACATCTAA 57.634 39.130 0.00 0.00 0.00 2.10
4518 6279 3.931907 TGCCCTAGTTATTGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
4523 6284 3.931907 AGATGTGCCCTAGTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
4524 6285 5.215252 TCTAGATGTGCCCTAGTTATTGC 57.785 43.478 0.00 0.00 36.06 3.56
4539 6300 5.221342 GGTGTGTCTAGGGAACATCTAGATG 60.221 48.000 27.63 27.63 43.25 2.90
4540 6301 4.896482 GGTGTGTCTAGGGAACATCTAGAT 59.104 45.833 0.00 0.00 43.25 1.98
4541 6302 4.279145 GGTGTGTCTAGGGAACATCTAGA 58.721 47.826 0.00 0.00 40.38 2.43
4542 6303 3.385111 GGGTGTGTCTAGGGAACATCTAG 59.615 52.174 0.00 0.00 36.46 2.43
4543 6304 3.012502 AGGGTGTGTCTAGGGAACATCTA 59.987 47.826 0.00 0.00 0.00 1.98
4544 6305 2.188817 GGGTGTGTCTAGGGAACATCT 58.811 52.381 0.00 0.00 0.00 2.90
4545 6306 2.188817 AGGGTGTGTCTAGGGAACATC 58.811 52.381 0.00 0.00 0.00 3.06
4546 6307 2.344093 AGGGTGTGTCTAGGGAACAT 57.656 50.000 0.00 0.00 0.00 2.71
4547 6308 3.484953 ATAGGGTGTGTCTAGGGAACA 57.515 47.619 0.00 0.00 0.00 3.18
4548 6309 4.838904 AAATAGGGTGTGTCTAGGGAAC 57.161 45.455 0.00 0.00 0.00 3.62
4549 6310 7.519347 AATAAAATAGGGTGTGTCTAGGGAA 57.481 36.000 0.00 0.00 0.00 3.97
4550 6311 7.519347 AAATAAAATAGGGTGTGTCTAGGGA 57.481 36.000 0.00 0.00 0.00 4.20
4551 6312 9.503399 GATAAATAAAATAGGGTGTGTCTAGGG 57.497 37.037 0.00 0.00 0.00 3.53
4555 6316 9.614792 GTGAGATAAATAAAATAGGGTGTGTCT 57.385 33.333 0.00 0.00 0.00 3.41
4556 6317 9.614792 AGTGAGATAAATAAAATAGGGTGTGTC 57.385 33.333 0.00 0.00 0.00 3.67
4557 6318 9.975218 AAGTGAGATAAATAAAATAGGGTGTGT 57.025 29.630 0.00 0.00 0.00 3.72
4592 6353 7.039504 GGGTGGATCTTCACGTAATAGGTATAA 60.040 40.741 0.00 0.00 38.46 0.98
4594 6355 5.245526 GGGTGGATCTTCACGTAATAGGTAT 59.754 44.000 0.00 0.00 38.46 2.73
4597 6358 3.552273 CGGGTGGATCTTCACGTAATAGG 60.552 52.174 0.00 0.00 38.46 2.57
4601 6362 1.475280 CTCGGGTGGATCTTCACGTAA 59.525 52.381 10.80 0.00 38.46 3.18
4613 6374 2.046892 CTTGCCTCACTCGGGTGG 60.047 66.667 17.03 6.24 43.17 4.61
4640 6401 2.124736 CCCGTCATGGCCATCGTT 60.125 61.111 17.61 0.00 35.87 3.85
4642 6403 0.880278 CTAACCCGTCATGGCCATCG 60.880 60.000 17.61 17.61 35.87 3.84
4652 6413 2.423577 AGCAACATTGTCTAACCCGTC 58.576 47.619 0.00 0.00 0.00 4.79
4654 6415 3.074412 AGAAGCAACATTGTCTAACCCG 58.926 45.455 0.00 0.00 0.00 5.28
4666 6427 0.108585 GGGTCCACAGAGAAGCAACA 59.891 55.000 0.00 0.00 0.00 3.33
4701 6462 1.953138 GATGCGCGAGTCCATGGAG 60.953 63.158 16.81 4.68 0.00 3.86
4705 6466 2.011741 TAACGGATGCGCGAGTCCAT 62.012 55.000 23.97 12.76 34.05 3.41
4712 6473 2.510691 AAGGGTAACGGATGCGCG 60.511 61.111 6.51 0.00 37.60 6.86
4755 6516 0.737219 GGTGGTGCTATCGTACGTCT 59.263 55.000 16.05 6.75 0.00 4.18
4812 6573 0.827368 GGGTTTGGTGAAGGCAAACA 59.173 50.000 1.73 0.00 39.70 2.83
4819 6580 5.377478 AGTAAAAGAGAGGGTTTGGTGAAG 58.623 41.667 0.00 0.00 0.00 3.02
4823 6584 6.256643 TGTAAGTAAAAGAGAGGGTTTGGT 57.743 37.500 0.00 0.00 0.00 3.67
4833 6594 7.657761 AGAACACTCCACATGTAAGTAAAAGAG 59.342 37.037 11.55 5.25 0.00 2.85
4834 6595 7.506114 AGAACACTCCACATGTAAGTAAAAGA 58.494 34.615 11.55 0.00 0.00 2.52
4836 6597 8.205512 TGTAGAACACTCCACATGTAAGTAAAA 58.794 33.333 11.55 0.00 0.00 1.52
4851 6612 1.661112 GCAGCGGAATGTAGAACACTC 59.339 52.381 0.00 0.00 0.00 3.51
4853 6614 1.726853 AGCAGCGGAATGTAGAACAC 58.273 50.000 0.00 0.00 0.00 3.32
4891 6652 5.071250 TGACAAGTCAAGTAACACCCTACAT 59.929 40.000 0.00 0.00 36.53 2.29
4970 6731 6.153924 AGGGGGATGATTAGACTACTTGATT 58.846 40.000 0.00 0.00 0.00 2.57
4971 6732 5.731924 AGGGGGATGATTAGACTACTTGAT 58.268 41.667 0.00 0.00 0.00 2.57
4995 6756 7.258441 TCTTGTAGGATCGAAAGTATGTCAAG 58.742 38.462 0.00 0.00 0.00 3.02
4997 6758 6.769134 TCTTGTAGGATCGAAAGTATGTCA 57.231 37.500 0.00 0.00 0.00 3.58
5020 6781 4.042187 ACAAAGACCAAAGCTCTGATACCT 59.958 41.667 0.00 0.00 0.00 3.08
5026 6787 3.057946 GGCTAACAAAGACCAAAGCTCTG 60.058 47.826 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.