Multiple sequence alignment - TraesCS1A01G230300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G230300 chr1A 100.000 7458 0 0 1 7458 402940256 402947713 0.000000e+00 13773.0
1 TraesCS1A01G230300 chr1A 94.017 117 5 2 6007 6121 535427462 535427578 7.690000e-40 176.0
2 TraesCS1A01G230300 chr1A 93.277 119 6 2 6004 6120 366271057 366270939 2.770000e-39 174.0
3 TraesCS1A01G230300 chr1A 91.954 87 5 2 4302 4387 402944642 402944557 3.650000e-23 121.0
4 TraesCS1A01G230300 chr1D 96.746 4733 134 3 1239 5951 320192712 320187980 0.000000e+00 7869.0
5 TraesCS1A01G230300 chr1D 90.381 1102 59 21 133 1233 320193814 320192759 0.000000e+00 1404.0
6 TraesCS1A01G230300 chr1D 88.889 639 40 11 6754 7368 320187297 320186666 0.000000e+00 758.0
7 TraesCS1A01G230300 chr1D 85.873 630 38 19 6119 6731 320187877 320187282 2.290000e-174 623.0
8 TraesCS1A01G230300 chr1B 96.836 2750 74 6 1299 4041 433108825 433106082 0.000000e+00 4584.0
9 TraesCS1A01G230300 chr1B 92.766 1645 91 14 4391 6015 433105769 433104133 0.000000e+00 2353.0
10 TraesCS1A01G230300 chr1B 93.947 1239 51 12 9 1233 433110185 433108957 0.000000e+00 1851.0
11 TraesCS1A01G230300 chr1B 87.072 642 48 16 6752 7366 433103557 433102924 0.000000e+00 693.0
12 TraesCS1A01G230300 chr1B 85.920 625 44 18 6119 6730 433104134 433103541 1.770000e-175 627.0
13 TraesCS1A01G230300 chr1B 91.786 280 18 4 4028 4306 433106052 433105777 1.170000e-102 385.0
14 TraesCS1A01G230300 chr1B 96.296 54 2 0 1239 1292 433108910 433108857 1.030000e-13 89.8
15 TraesCS1A01G230300 chr7A 96.429 112 4 0 6010 6121 25411000 25411111 1.280000e-42 185.0
16 TraesCS1A01G230300 chr2A 97.248 109 3 0 6013 6121 763687462 763687570 1.280000e-42 185.0
17 TraesCS1A01G230300 chr2A 94.017 117 5 2 6007 6121 187945900 187945784 7.690000e-40 176.0
18 TraesCS1A01G230300 chr3A 94.167 120 4 3 6014 6133 651627863 651627747 5.950000e-41 180.0
19 TraesCS1A01G230300 chr3A 92.562 121 7 2 6008 6127 451675260 451675141 9.950000e-39 172.0
20 TraesCS1A01G230300 chr7D 93.443 122 5 3 6013 6132 4020213 4020093 2.140000e-40 178.0
21 TraesCS1A01G230300 chr7D 84.043 94 6 8 4305 4390 177106944 177106852 1.720000e-11 82.4
22 TraesCS1A01G230300 chr6A 92.500 120 9 0 6001 6120 349938922 349939041 9.950000e-39 172.0
23 TraesCS1A01G230300 chr3D 84.783 92 7 7 4301 4385 515774565 515774474 1.330000e-12 86.1
24 TraesCS1A01G230300 chr5A 82.474 97 10 7 4298 4388 505609590 505609685 2.230000e-10 78.7
25 TraesCS1A01G230300 chr5A 81.111 90 10 6 4303 4386 390797127 390797215 1.740000e-06 65.8
26 TraesCS1A01G230300 chr3B 83.333 90 9 6 4305 4388 40772117 40772028 2.230000e-10 78.7
27 TraesCS1A01G230300 chr2D 82.222 90 8 7 4305 4387 560513453 560513541 3.730000e-08 71.3
28 TraesCS1A01G230300 chr6D 81.319 91 8 7 4301 4383 369072897 369072986 1.740000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G230300 chr1A 402940256 402947713 7457 False 13773.000000 13773 100.00000 1 7458 1 chr1A.!!$F1 7457
1 TraesCS1A01G230300 chr1D 320186666 320193814 7148 True 2663.500000 7869 90.47225 133 7368 4 chr1D.!!$R1 7235
2 TraesCS1A01G230300 chr1B 433102924 433110185 7261 True 1511.828571 4584 92.08900 9 7366 7 chr1B.!!$R1 7357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.727398 GGCGGCAACATCTGTAGTTC 59.273 55.000 3.07 0.00 0.00 3.01 F
419 425 0.863144 AAGCAATGCAAAGCAAAGCG 59.137 45.000 8.35 0.00 43.62 4.68 F
954 967 1.086634 GCTGTGCCGATCAGGAGTTC 61.087 60.000 7.64 0.00 45.00 3.01 F
1940 2020 0.179089 GTGATGACTGGAGCGATGCT 60.179 55.000 0.00 0.00 43.88 3.79 F
3108 3188 1.000283 CCACCATTTTTAACTGCGCCA 60.000 47.619 4.18 0.00 0.00 5.69 F
3230 3310 1.970114 GCCACAGCACTGCAGTGAT 60.970 57.895 43.32 37.63 46.46 3.06 F
4329 4461 2.038557 CCCTCCGTCCCACAATATAAGG 59.961 54.545 0.00 0.00 0.00 2.69 F
4674 4825 0.896940 CAACCTGGCAATGGAGCAGT 60.897 55.000 0.00 0.00 35.83 4.40 F
6296 6502 0.466124 AGGGAGCAAGATAACGAGCC 59.534 55.000 0.00 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 1377 2.031508 ACCAATGTTACAAAGTTCCGCG 60.032 45.455 0.00 0.0 0.00 6.46 R
1495 1575 3.244814 CAGATGAAGTCGAATGCAGTAGC 59.755 47.826 0.00 0.0 42.57 3.58 R
2351 2431 3.857157 AGTGAAGGTAACAGCTCCAAA 57.143 42.857 0.00 0.0 41.41 3.28 R
3112 3192 1.269448 CAAACGCCAACATAAGCTGGT 59.731 47.619 0.00 0.0 33.41 4.00 R
4357 4504 2.038557 CCCTCCGTCCCACAATATAAGG 59.961 54.545 0.00 0.0 0.00 2.69 R
4368 4515 3.303049 TCTTTATTACTCCCTCCGTCCC 58.697 50.000 0.00 0.0 0.00 4.46 R
6103 6308 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.0 0.00 4.55 R
6451 6664 0.179032 TCTTCTGCGCCCTTCACAAA 60.179 50.000 4.18 0.0 0.00 2.83 R
7185 7423 0.460284 CAACCCGGACCTCTGATTCG 60.460 60.000 0.73 0.0 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.727398 GGCGGCAACATCTGTAGTTC 59.273 55.000 3.07 0.00 0.00 3.01
30 31 1.676014 GGCGGCAACATCTGTAGTTCT 60.676 52.381 3.07 0.00 0.00 3.01
31 32 1.661112 GCGGCAACATCTGTAGTTCTC 59.339 52.381 0.00 0.00 0.00 2.87
32 33 2.675317 GCGGCAACATCTGTAGTTCTCT 60.675 50.000 0.00 0.00 0.00 3.10
68 69 9.717892 GATAGGATTTCAATTCTACGTTTTTCC 57.282 33.333 0.00 0.00 29.50 3.13
117 118 3.706086 AGAGGCCTTGAATTGTTTTGTGT 59.294 39.130 6.77 0.00 0.00 3.72
140 141 4.398044 TGGAACTCAAACAGAACCAACTTC 59.602 41.667 0.00 0.00 31.49 3.01
188 189 2.676748 TGCCTTCCACATTCCTTTTGT 58.323 42.857 0.00 0.00 0.00 2.83
193 194 4.262164 CCTTCCACATTCCTTTTGTCCAAG 60.262 45.833 0.00 0.00 0.00 3.61
278 282 4.401022 TGTCTCTGATGTGGCAAAAAGAT 58.599 39.130 0.00 0.00 0.00 2.40
379 384 1.631071 TTACCGGCATGCCATCTCCA 61.631 55.000 34.93 11.63 35.37 3.86
419 425 0.863144 AAGCAATGCAAAGCAAAGCG 59.137 45.000 8.35 0.00 43.62 4.68
480 486 1.300963 CCATCCTGACCCACACCAG 59.699 63.158 0.00 0.00 0.00 4.00
749 762 4.935205 TGATGTACTTTAGCACACATGTCC 59.065 41.667 0.00 0.00 31.94 4.02
752 765 3.508845 ACTTTAGCACACATGTCCCTT 57.491 42.857 0.00 0.00 0.00 3.95
763 776 5.357878 CACACATGTCCCTTTATAATGCAGT 59.642 40.000 0.00 0.00 0.00 4.40
764 777 5.951747 ACACATGTCCCTTTATAATGCAGTT 59.048 36.000 0.00 0.00 0.00 3.16
767 780 6.319658 ACATGTCCCTTTATAATGCAGTTCAG 59.680 38.462 0.00 0.00 0.00 3.02
769 782 4.580580 GTCCCTTTATAATGCAGTTCAGGG 59.419 45.833 11.47 11.47 41.17 4.45
770 783 3.319122 CCCTTTATAATGCAGTTCAGGGC 59.681 47.826 0.00 0.00 33.54 5.19
771 784 3.953612 CCTTTATAATGCAGTTCAGGGCA 59.046 43.478 0.00 0.00 45.23 5.36
863 876 1.174712 GCCCAATGGATCGGACATGG 61.175 60.000 0.00 0.00 0.00 3.66
881 894 2.665603 GGAGAAGAGCACGGCCTT 59.334 61.111 0.00 0.00 0.00 4.35
882 895 1.743252 GGAGAAGAGCACGGCCTTG 60.743 63.158 4.51 4.51 0.00 3.61
954 967 1.086634 GCTGTGCCGATCAGGAGTTC 61.087 60.000 7.64 0.00 45.00 3.01
1103 1116 2.609459 GACATGCAAATCCTACCACTCG 59.391 50.000 0.00 0.00 0.00 4.18
1104 1117 1.331756 CATGCAAATCCTACCACTCGC 59.668 52.381 0.00 0.00 0.00 5.03
1207 1221 8.829373 AAGAACAGCTATCCCTTATTTGAATT 57.171 30.769 0.00 0.00 0.00 2.17
1210 1224 9.521503 GAACAGCTATCCCTTATTTGAATTTTC 57.478 33.333 0.00 0.00 0.00 2.29
1233 1247 4.935702 TCCAACATTTTTGCTTGTGAGAG 58.064 39.130 0.00 0.00 0.00 3.20
1235 1249 4.741676 CCAACATTTTTGCTTGTGAGAGAC 59.258 41.667 0.00 0.00 0.00 3.36
1236 1250 5.342433 CAACATTTTTGCTTGTGAGAGACA 58.658 37.500 0.00 0.00 0.00 3.41
1294 1374 4.479158 AGTGAAACCCTTTCCTGCAATTA 58.521 39.130 0.00 0.00 38.90 1.40
1297 1377 6.152831 AGTGAAACCCTTTCCTGCAATTATAC 59.847 38.462 0.00 0.00 38.90 1.47
1316 1396 3.262135 ACGCGGAACTTTGTAACATTG 57.738 42.857 12.47 0.00 0.00 2.82
1355 1435 8.254508 ACAGAATTTGTACCTTAACTGCAAAAA 58.745 29.630 0.00 0.00 38.56 1.94
1371 1451 5.975282 TGCAAAAATTTAGATATGCTGGCA 58.025 33.333 0.00 0.00 34.97 4.92
1495 1575 5.530915 TGTCAAGTAAACTCCATGAAAGGTG 59.469 40.000 0.00 0.00 0.00 4.00
1545 1625 2.371841 TGCCGAGTATTGCCATCCTAAT 59.628 45.455 0.00 0.00 0.00 1.73
1940 2020 0.179089 GTGATGACTGGAGCGATGCT 60.179 55.000 0.00 0.00 43.88 3.79
2390 2470 3.500680 CACTTTTACACGTGGCCTGTAAT 59.499 43.478 21.57 0.00 34.75 1.89
2690 2770 5.615289 CTTCACCTTCTCAGAAGGAAAGAA 58.385 41.667 36.09 29.53 39.81 2.52
2774 2854 1.134280 CCACACCCTGATAAGGCTCAG 60.134 57.143 0.00 0.00 41.93 3.35
2820 2900 4.466015 ACTTGTCCAATTGTGTCAACCTTT 59.534 37.500 4.43 0.00 0.00 3.11
2868 2948 4.526438 AAAAATATGGCAGCTAGGAGGT 57.474 40.909 0.00 0.00 0.00 3.85
2980 3060 6.841755 GGATATGCTGGTATTCCTACTATCCT 59.158 42.308 0.00 0.00 32.79 3.24
2994 3074 9.800716 TTCCTACTATCCTAGATACTCCTGATA 57.199 37.037 0.00 0.00 0.00 2.15
3104 3184 3.068873 TGACACCCACCATTTTTAACTGC 59.931 43.478 0.00 0.00 0.00 4.40
3108 3188 1.000283 CCACCATTTTTAACTGCGCCA 60.000 47.619 4.18 0.00 0.00 5.69
3112 3192 4.013728 ACCATTTTTAACTGCGCCATCTA 58.986 39.130 4.18 0.00 0.00 1.98
3230 3310 1.970114 GCCACAGCACTGCAGTGAT 60.970 57.895 43.32 37.63 46.46 3.06
3264 3344 8.801882 ATCGGAAATGACAGTTTATTTTCCTA 57.198 30.769 12.08 4.33 0.00 2.94
3532 3612 5.392057 GCTTGCCTTCAGGTCAAGTATAAAC 60.392 44.000 21.27 8.41 44.10 2.01
3581 3661 9.754382 ACAGAAACTAGTTTTAATTGACGAGTA 57.246 29.630 21.40 0.00 32.55 2.59
3658 3739 4.944317 GCAATTATAGGAATAGGAGTGCCC 59.056 45.833 0.00 0.00 33.31 5.36
3780 3861 8.696043 TCCCTTGGTGAAAATGATATAAGATG 57.304 34.615 0.00 0.00 0.00 2.90
3802 3883 8.043113 AGATGTTATGCTTGTGAGATCTTGTTA 58.957 33.333 0.00 0.00 0.00 2.41
3910 3997 6.062095 TGGAAAAGGTAAGGAGAGTTTCTTG 58.938 40.000 0.00 0.00 0.00 3.02
3954 4041 6.976934 AGTTGAATGGTTTGGTATTGACTT 57.023 33.333 0.00 0.00 0.00 3.01
3969 4056 5.968387 ATTGACTTACTAGTACATTGCGC 57.032 39.130 0.91 0.00 33.84 6.09
4011 4099 8.591114 ATGTAGAGTCAACTAGCCTAAGTTTA 57.409 34.615 0.00 0.00 37.61 2.01
4261 4393 5.046014 CCTCTCCTTCCTTTCTGAATCAGAA 60.046 44.000 20.61 20.61 46.93 3.02
4329 4461 2.038557 CCCTCCGTCCCACAATATAAGG 59.961 54.545 0.00 0.00 0.00 2.69
4368 4515 8.275015 TGGATGTAACAACACCTTATATTGTG 57.725 34.615 0.00 1.68 36.69 3.33
4443 4590 8.806146 GGCACCAATATTAAAATGGACATCTAT 58.194 33.333 10.50 0.00 37.66 1.98
4500 4651 5.765182 CCCTTCTAAACTCAAGAACATGTGT 59.235 40.000 0.00 0.00 0.00 3.72
4674 4825 0.896940 CAACCTGGCAATGGAGCAGT 60.897 55.000 0.00 0.00 35.83 4.40
5334 5499 6.936900 GCTTCCTATGCTAAATTATCTCACCA 59.063 38.462 0.00 0.00 0.00 4.17
5338 5503 8.535335 TCCTATGCTAAATTATCTCACCAGATC 58.465 37.037 0.00 0.00 40.18 2.75
5341 5506 4.390297 GCTAAATTATCTCACCAGATCGGC 59.610 45.833 3.85 0.00 40.18 5.54
5547 5712 7.038154 TGGTAATAGCATCTAAAAACATGGC 57.962 36.000 0.00 0.00 0.00 4.40
5561 5726 3.928727 ACATGGCATCTGAAACACAAG 57.071 42.857 0.00 0.00 0.00 3.16
5606 5771 9.684448 GATGTATCAGTAGAATCGAAGATTGAA 57.316 33.333 0.00 0.00 45.12 2.69
5653 5818 6.945435 TGGAGAATCAGTAAGCAACCAATTAA 59.055 34.615 0.00 0.00 36.25 1.40
6019 6224 9.895138 TTATTTTGGTTACACTAATCTACTCCC 57.105 33.333 0.00 0.00 0.00 4.30
6020 6225 7.563724 TTTTGGTTACACTAATCTACTCCCT 57.436 36.000 0.00 0.00 0.00 4.20
6021 6226 8.669055 TTTTGGTTACACTAATCTACTCCCTA 57.331 34.615 0.00 0.00 0.00 3.53
6022 6227 7.651027 TTGGTTACACTAATCTACTCCCTAC 57.349 40.000 0.00 0.00 0.00 3.18
6023 6228 5.824624 TGGTTACACTAATCTACTCCCTACG 59.175 44.000 0.00 0.00 0.00 3.51
6024 6229 5.825151 GGTTACACTAATCTACTCCCTACGT 59.175 44.000 0.00 0.00 0.00 3.57
6025 6230 6.319911 GGTTACACTAATCTACTCCCTACGTT 59.680 42.308 0.00 0.00 0.00 3.99
6026 6231 7.148000 GGTTACACTAATCTACTCCCTACGTTT 60.148 40.741 0.00 0.00 0.00 3.60
6027 6232 6.448207 ACACTAATCTACTCCCTACGTTTC 57.552 41.667 0.00 0.00 0.00 2.78
6028 6233 5.948162 ACACTAATCTACTCCCTACGTTTCA 59.052 40.000 0.00 0.00 0.00 2.69
6029 6234 6.435277 ACACTAATCTACTCCCTACGTTTCAA 59.565 38.462 0.00 0.00 0.00 2.69
6030 6235 7.039504 ACACTAATCTACTCCCTACGTTTCAAA 60.040 37.037 0.00 0.00 0.00 2.69
6031 6236 7.980099 CACTAATCTACTCCCTACGTTTCAAAT 59.020 37.037 0.00 0.00 0.00 2.32
6032 6237 8.537858 ACTAATCTACTCCCTACGTTTCAAATT 58.462 33.333 0.00 0.00 0.00 1.82
6034 6239 8.713737 AATCTACTCCCTACGTTTCAAATTAC 57.286 34.615 0.00 0.00 0.00 1.89
6035 6240 7.472334 TCTACTCCCTACGTTTCAAATTACT 57.528 36.000 0.00 0.00 0.00 2.24
6036 6241 7.542025 TCTACTCCCTACGTTTCAAATTACTC 58.458 38.462 0.00 0.00 0.00 2.59
6037 6242 5.166398 ACTCCCTACGTTTCAAATTACTCG 58.834 41.667 0.00 0.00 0.00 4.18
6038 6243 5.138125 TCCCTACGTTTCAAATTACTCGT 57.862 39.130 0.00 0.00 35.73 4.18
6039 6244 5.163513 TCCCTACGTTTCAAATTACTCGTC 58.836 41.667 0.00 0.00 33.70 4.20
6040 6245 4.030977 CCCTACGTTTCAAATTACTCGTCG 59.969 45.833 0.00 0.00 33.70 5.12
6041 6246 3.429061 ACGTTTCAAATTACTCGTCGC 57.571 42.857 0.00 0.00 0.00 5.19
6042 6247 2.796031 ACGTTTCAAATTACTCGTCGCA 59.204 40.909 0.00 0.00 0.00 5.10
6043 6248 3.121126 ACGTTTCAAATTACTCGTCGCAG 60.121 43.478 0.00 0.00 0.00 5.18
6044 6249 3.120616 CGTTTCAAATTACTCGTCGCAGA 59.879 43.478 0.00 0.00 0.00 4.26
6045 6250 4.375606 CGTTTCAAATTACTCGTCGCAGAA 60.376 41.667 0.00 0.00 39.69 3.02
6046 6251 5.437263 GTTTCAAATTACTCGTCGCAGAAA 58.563 37.500 0.00 0.00 39.69 2.52
6047 6252 5.856126 TTCAAATTACTCGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
6048 6253 5.203358 TCAAATTACTCGTCGCAGAAATG 57.797 39.130 0.00 0.00 39.69 2.32
6049 6254 4.092821 TCAAATTACTCGTCGCAGAAATGG 59.907 41.667 0.00 0.00 39.69 3.16
6050 6255 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
6051 6256 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
6052 6257 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
6053 6258 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
6054 6259 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
6055 6260 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
6056 6261 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
6057 6262 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
6058 6263 3.804325 CGTCGCAGAAATGGATGTATCTT 59.196 43.478 0.00 0.00 39.69 2.40
6059 6264 4.318333 CGTCGCAGAAATGGATGTATCTTG 60.318 45.833 0.00 0.00 39.69 3.02
6060 6265 4.811024 GTCGCAGAAATGGATGTATCTTGA 59.189 41.667 0.00 0.00 39.69 3.02
6061 6266 5.294306 GTCGCAGAAATGGATGTATCTTGAA 59.706 40.000 0.00 0.00 39.69 2.69
6062 6267 5.294306 TCGCAGAAATGGATGTATCTTGAAC 59.706 40.000 0.00 0.00 0.00 3.18
6063 6268 5.295292 CGCAGAAATGGATGTATCTTGAACT 59.705 40.000 0.00 0.00 0.00 3.01
6064 6269 6.479990 CGCAGAAATGGATGTATCTTGAACTA 59.520 38.462 0.00 0.00 0.00 2.24
6065 6270 7.011389 CGCAGAAATGGATGTATCTTGAACTAA 59.989 37.037 0.00 0.00 0.00 2.24
6066 6271 8.677300 GCAGAAATGGATGTATCTTGAACTAAA 58.323 33.333 0.00 0.00 0.00 1.85
6092 6297 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
6093 6298 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
6094 6299 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
6095 6300 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
6096 6301 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
6097 6302 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
6098 6303 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
6099 6304 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
6100 6305 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
6101 6306 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
6102 6307 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
6103 6308 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
6104 6309 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
6137 6342 6.216251 AGGGAGTATGTATCAATATGTGGCAT 59.784 38.462 0.00 0.00 0.00 4.40
6138 6343 6.317140 GGGAGTATGTATCAATATGTGGCATG 59.683 42.308 0.00 0.00 0.00 4.06
6175 6380 3.257393 CCTCTTTCACTCCGATGTCTTG 58.743 50.000 0.00 0.00 0.00 3.02
6296 6502 0.466124 AGGGAGCAAGATAACGAGCC 59.534 55.000 0.00 0.00 0.00 4.70
6304 6510 3.677424 GCAAGATAACGAGCCTCTTCACT 60.677 47.826 0.00 0.00 0.00 3.41
6310 6516 1.271054 ACGAGCCTCTTCACTGCAAAT 60.271 47.619 0.00 0.00 0.00 2.32
6373 6586 5.468072 GGTCAGTAGCATACCATGAATCTTG 59.532 44.000 0.00 0.00 44.47 3.02
6374 6587 5.468072 GTCAGTAGCATACCATGAATCTTGG 59.532 44.000 12.94 12.94 44.47 3.61
6393 6606 6.068010 TCTTGGTAAGGTGTCATTCATGTTT 58.932 36.000 0.00 0.00 0.00 2.83
6394 6607 5.703978 TGGTAAGGTGTCATTCATGTTTG 57.296 39.130 0.00 0.00 0.00 2.93
6419 6632 8.726988 TGTCTAGCATTTACACCAAGAATAAAC 58.273 33.333 0.00 0.00 0.00 2.01
6420 6633 8.726988 GTCTAGCATTTACACCAAGAATAAACA 58.273 33.333 0.00 0.00 0.00 2.83
6421 6634 8.726988 TCTAGCATTTACACCAAGAATAAACAC 58.273 33.333 0.00 0.00 0.00 3.32
6422 6635 7.283625 AGCATTTACACCAAGAATAAACACA 57.716 32.000 0.00 0.00 0.00 3.72
6423 6636 7.145323 AGCATTTACACCAAGAATAAACACAC 58.855 34.615 0.00 0.00 0.00 3.82
6424 6637 6.364976 GCATTTACACCAAGAATAAACACACC 59.635 38.462 0.00 0.00 0.00 4.16
6425 6638 7.429633 CATTTACACCAAGAATAAACACACCA 58.570 34.615 0.00 0.00 0.00 4.17
6426 6639 7.589958 TTTACACCAAGAATAAACACACCAT 57.410 32.000 0.00 0.00 0.00 3.55
6427 6640 5.452078 ACACCAAGAATAAACACACCATG 57.548 39.130 0.00 0.00 0.00 3.66
6451 6664 2.307098 GCTATTACAGGCATGGATCCCT 59.693 50.000 9.90 0.00 0.00 4.20
6472 6685 1.743252 GTGAAGGGCGCAGAAGAGG 60.743 63.158 10.83 0.00 0.00 3.69
6478 6691 1.398958 GGGCGCAGAAGAGGAGAGAT 61.399 60.000 10.83 0.00 0.00 2.75
6488 6701 2.378038 AGAGGAGAGATGAGCACAGAC 58.622 52.381 0.00 0.00 0.00 3.51
6547 6761 7.596248 CAGAACACACATGGAAAATAAGGAAAG 59.404 37.037 0.00 0.00 0.00 2.62
6575 6789 2.306847 CTTTGTTGTACAAGGCACCCT 58.693 47.619 8.98 0.00 39.53 4.34
6576 6790 1.975660 TTGTTGTACAAGGCACCCTC 58.024 50.000 8.98 0.00 32.34 4.30
6578 6792 0.109723 GTTGTACAAGGCACCCTCCA 59.890 55.000 8.98 0.00 30.89 3.86
6579 6793 0.400213 TTGTACAAGGCACCCTCCAG 59.600 55.000 3.59 0.00 30.89 3.86
6580 6794 0.472925 TGTACAAGGCACCCTCCAGA 60.473 55.000 0.00 0.00 30.89 3.86
6583 6797 0.768221 ACAAGGCACCCTCCAGAAGA 60.768 55.000 0.00 0.00 30.89 2.87
6584 6798 0.035630 CAAGGCACCCTCCAGAAGAG 60.036 60.000 0.00 0.00 42.83 2.85
6585 6799 0.178891 AAGGCACCCTCCAGAAGAGA 60.179 55.000 0.00 0.00 46.50 3.10
6586 6800 0.907230 AGGCACCCTCCAGAAGAGAC 60.907 60.000 0.00 0.00 46.50 3.36
6587 6801 1.216710 GCACCCTCCAGAAGAGACG 59.783 63.158 0.00 0.00 46.50 4.18
6589 6803 1.985116 ACCCTCCAGAAGAGACGGC 60.985 63.158 0.00 0.00 46.50 5.68
6590 6804 1.984570 CCCTCCAGAAGAGACGGCA 60.985 63.158 0.00 0.00 46.50 5.69
6591 6805 1.216710 CCTCCAGAAGAGACGGCAC 59.783 63.158 0.00 0.00 46.50 5.01
6592 6806 1.216710 CTCCAGAAGAGACGGCACC 59.783 63.158 0.00 0.00 46.50 5.01
6593 6807 2.125912 CCAGAAGAGACGGCACCG 60.126 66.667 7.71 7.71 46.03 4.94
6594 6808 2.811317 CAGAAGAGACGGCACCGC 60.811 66.667 9.43 2.09 44.19 5.68
6595 6809 3.303135 AGAAGAGACGGCACCGCA 61.303 61.111 9.43 0.00 44.19 5.69
6596 6810 2.811317 GAAGAGACGGCACCGCAG 60.811 66.667 9.43 0.00 44.19 5.18
6597 6811 3.282745 GAAGAGACGGCACCGCAGA 62.283 63.158 9.43 0.00 44.19 4.26
6598 6812 2.564553 GAAGAGACGGCACCGCAGAT 62.565 60.000 9.43 0.00 44.19 2.90
6599 6813 1.320344 AAGAGACGGCACCGCAGATA 61.320 55.000 9.43 0.00 44.19 1.98
6600 6814 1.141019 GAGACGGCACCGCAGATAA 59.859 57.895 9.43 0.00 44.19 1.75
6601 6815 0.249489 GAGACGGCACCGCAGATAAT 60.249 55.000 9.43 0.00 44.19 1.28
6602 6816 0.530650 AGACGGCACCGCAGATAATG 60.531 55.000 9.43 0.00 44.19 1.90
6603 6817 0.810031 GACGGCACCGCAGATAATGT 60.810 55.000 9.43 0.00 44.19 2.71
6604 6818 0.392461 ACGGCACCGCAGATAATGTT 60.392 50.000 9.43 0.00 44.19 2.71
6605 6819 0.732571 CGGCACCGCAGATAATGTTT 59.267 50.000 0.00 0.00 0.00 2.83
6606 6820 1.132262 CGGCACCGCAGATAATGTTTT 59.868 47.619 0.00 0.00 0.00 2.43
6607 6821 2.791158 CGGCACCGCAGATAATGTTTTC 60.791 50.000 0.00 0.00 0.00 2.29
6608 6822 2.479560 GGCACCGCAGATAATGTTTTCC 60.480 50.000 0.00 0.00 0.00 3.13
6609 6823 2.423538 GCACCGCAGATAATGTTTTCCT 59.576 45.455 0.00 0.00 0.00 3.36
6612 6826 2.684881 CCGCAGATAATGTTTTCCTGCT 59.315 45.455 0.00 0.00 45.65 4.24
6629 6843 1.883926 TGCTTCGCAGTGACTAGTACA 59.116 47.619 0.00 0.00 33.32 2.90
6651 6869 9.657121 GTACAGTCGTACCTAATGTAAATAGTC 57.343 37.037 5.14 0.00 41.92 2.59
6652 6870 8.517062 ACAGTCGTACCTAATGTAAATAGTCT 57.483 34.615 0.00 0.00 0.00 3.24
6699 6917 4.202441 AGAGGATAATGTGCATGTTCACC 58.798 43.478 0.00 0.00 36.17 4.02
6722 6940 3.560826 AAAAACGATTGTGTGCCGG 57.439 47.368 0.00 0.00 0.00 6.13
6723 6941 0.741915 AAAAACGATTGTGTGCCGGT 59.258 45.000 1.90 0.00 0.00 5.28
6724 6942 0.030101 AAAACGATTGTGTGCCGGTG 59.970 50.000 1.90 0.00 0.00 4.94
6725 6943 1.098712 AAACGATTGTGTGCCGGTGT 61.099 50.000 1.90 0.00 0.00 4.16
6726 6944 1.781025 AACGATTGTGTGCCGGTGTG 61.781 55.000 1.90 0.00 0.00 3.82
6727 6945 2.250939 CGATTGTGTGCCGGTGTGT 61.251 57.895 1.90 0.00 0.00 3.72
6728 6946 1.282570 GATTGTGTGCCGGTGTGTG 59.717 57.895 1.90 0.00 0.00 3.82
6729 6947 1.444119 GATTGTGTGCCGGTGTGTGT 61.444 55.000 1.90 0.00 0.00 3.72
6730 6948 1.723608 ATTGTGTGCCGGTGTGTGTG 61.724 55.000 1.90 0.00 0.00 3.82
6731 6949 2.822255 GTGTGCCGGTGTGTGTGT 60.822 61.111 1.90 0.00 0.00 3.72
6732 6950 2.821810 TGTGCCGGTGTGTGTGTG 60.822 61.111 1.90 0.00 0.00 3.82
6733 6951 2.822255 GTGCCGGTGTGTGTGTGT 60.822 61.111 1.90 0.00 0.00 3.72
6734 6952 2.821810 TGCCGGTGTGTGTGTGTG 60.822 61.111 1.90 0.00 0.00 3.82
6735 6953 2.822255 GCCGGTGTGTGTGTGTGT 60.822 61.111 1.90 0.00 0.00 3.72
6736 6954 3.097672 CCGGTGTGTGTGTGTGTG 58.902 61.111 0.00 0.00 0.00 3.82
6737 6955 1.743623 CCGGTGTGTGTGTGTGTGT 60.744 57.895 0.00 0.00 0.00 3.72
6738 6956 1.423450 CGGTGTGTGTGTGTGTGTG 59.577 57.895 0.00 0.00 0.00 3.82
6739 6957 1.295357 CGGTGTGTGTGTGTGTGTGT 61.295 55.000 0.00 0.00 0.00 3.72
6740 6958 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
6741 6959 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6742 6960 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6743 6961 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6744 6962 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6745 6963 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6746 6964 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6747 6965 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6748 6966 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6749 6967 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6750 6968 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6751 6969 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6752 6970 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6753 6971 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6754 6972 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6755 6973 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6756 6974 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6757 6975 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6758 6976 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6759 6977 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6792 7010 1.202580 ACTTGACACTGTCTCACTGGC 60.203 52.381 10.54 0.00 33.15 4.85
6816 7034 6.264832 CAGCAACTTCCATAAATTCGCATTA 58.735 36.000 0.00 0.00 0.00 1.90
6842 7060 3.575965 GTGAAACTGAAATCGGGCATT 57.424 42.857 0.00 0.00 0.00 3.56
6843 7061 3.913089 GTGAAACTGAAATCGGGCATTT 58.087 40.909 0.00 0.00 37.41 2.32
6844 7062 5.054390 GTGAAACTGAAATCGGGCATTTA 57.946 39.130 0.00 0.00 34.60 1.40
6845 7063 5.095490 GTGAAACTGAAATCGGGCATTTAG 58.905 41.667 0.00 0.00 34.60 1.85
6846 7064 5.007034 TGAAACTGAAATCGGGCATTTAGA 58.993 37.500 0.00 0.00 34.60 2.10
6847 7065 5.652014 TGAAACTGAAATCGGGCATTTAGAT 59.348 36.000 0.00 0.00 34.60 1.98
6887 7105 6.793492 AGAAGTGTAGAATCAAAGCTCAAC 57.207 37.500 0.00 0.00 0.00 3.18
6893 7111 3.428532 AGAATCAAAGCTCAACATGGCT 58.571 40.909 0.00 0.00 40.85 4.75
6895 7113 5.198965 AGAATCAAAGCTCAACATGGCTAT 58.801 37.500 0.00 0.00 37.87 2.97
6896 7114 5.298777 AGAATCAAAGCTCAACATGGCTATC 59.701 40.000 0.00 0.00 37.87 2.08
6897 7115 2.938451 TCAAAGCTCAACATGGCTATCG 59.062 45.455 0.00 0.00 37.87 2.92
6908 7146 3.437395 ACATGGCTATCGCGTAAAAACAA 59.563 39.130 5.77 0.00 36.88 2.83
6977 7215 3.562973 ACAATGCTGATAAGGATCAAGCG 59.437 43.478 0.00 0.00 41.62 4.68
6978 7216 2.245159 TGCTGATAAGGATCAAGCGG 57.755 50.000 0.00 0.00 41.62 5.52
6984 7222 4.556233 TGATAAGGATCAAGCGGAATACG 58.444 43.478 0.00 0.00 41.60 3.06
7117 7355 4.786425 AGAAACTCTTCTTGGCTTCTTGT 58.214 39.130 0.00 0.00 38.89 3.16
7158 7396 3.382832 ACGCCTGACCTTCCGGAG 61.383 66.667 3.34 0.00 0.00 4.63
7169 7407 0.946221 CTTCCGGAGATGTATGCGCC 60.946 60.000 3.34 0.00 32.04 6.53
7185 7423 2.978010 CCACGCCAGACCAACCAC 60.978 66.667 0.00 0.00 0.00 4.16
7239 7478 2.717390 TCGAGAGAGTGCTAGAAGCTT 58.283 47.619 0.00 0.00 37.64 3.74
7244 7483 0.808060 GAGTGCTAGAAGCTTCCGGC 60.808 60.000 22.81 24.19 42.97 6.13
7278 7517 3.583276 TTGAATCGAGCCCGCACGT 62.583 57.895 6.42 0.00 35.37 4.49
7300 7542 1.885871 GCGCCAAGAGCCAATTCTT 59.114 52.632 0.00 0.00 37.90 2.52
7348 7592 5.573337 TTTCGGTTCTTTTTCCGGTTTTA 57.427 34.783 0.00 0.00 45.79 1.52
7349 7593 4.550577 TCGGTTCTTTTTCCGGTTTTAC 57.449 40.909 0.00 0.00 45.79 2.01
7352 7596 5.125257 TCGGTTCTTTTTCCGGTTTTACTTT 59.875 36.000 0.00 0.00 45.79 2.66
7353 7597 5.806502 CGGTTCTTTTTCCGGTTTTACTTTT 59.193 36.000 0.00 0.00 42.61 2.27
7354 7598 6.310956 CGGTTCTTTTTCCGGTTTTACTTTTT 59.689 34.615 0.00 0.00 42.61 1.94
7355 7599 7.487509 CGGTTCTTTTTCCGGTTTTACTTTTTA 59.512 33.333 0.00 0.00 42.61 1.52
7356 7600 8.594687 GGTTCTTTTTCCGGTTTTACTTTTTAC 58.405 33.333 0.00 0.00 0.00 2.01
7369 7613 9.320406 GTTTTACTTTTTACTTTTTGTGGTTGC 57.680 29.630 0.00 0.00 0.00 4.17
7370 7614 8.834749 TTTACTTTTTACTTTTTGTGGTTGCT 57.165 26.923 0.00 0.00 0.00 3.91
7371 7615 6.961359 ACTTTTTACTTTTTGTGGTTGCTC 57.039 33.333 0.00 0.00 0.00 4.26
7372 7616 6.697395 ACTTTTTACTTTTTGTGGTTGCTCT 58.303 32.000 0.00 0.00 0.00 4.09
7373 7617 6.811665 ACTTTTTACTTTTTGTGGTTGCTCTC 59.188 34.615 0.00 0.00 0.00 3.20
7374 7618 6.524101 TTTTACTTTTTGTGGTTGCTCTCT 57.476 33.333 0.00 0.00 0.00 3.10
7375 7619 6.524101 TTTACTTTTTGTGGTTGCTCTCTT 57.476 33.333 0.00 0.00 0.00 2.85
7376 7620 4.376340 ACTTTTTGTGGTTGCTCTCTTG 57.624 40.909 0.00 0.00 0.00 3.02
7377 7621 3.763897 ACTTTTTGTGGTTGCTCTCTTGT 59.236 39.130 0.00 0.00 0.00 3.16
7378 7622 4.947388 ACTTTTTGTGGTTGCTCTCTTGTA 59.053 37.500 0.00 0.00 0.00 2.41
7379 7623 5.417580 ACTTTTTGTGGTTGCTCTCTTGTAA 59.582 36.000 0.00 0.00 0.00 2.41
7380 7624 5.906113 TTTTGTGGTTGCTCTCTTGTAAA 57.094 34.783 0.00 0.00 0.00 2.01
7381 7625 5.906113 TTTGTGGTTGCTCTCTTGTAAAA 57.094 34.783 0.00 0.00 0.00 1.52
7382 7626 5.906113 TTGTGGTTGCTCTCTTGTAAAAA 57.094 34.783 0.00 0.00 0.00 1.94
7383 7627 5.499139 TGTGGTTGCTCTCTTGTAAAAAG 57.501 39.130 0.00 0.00 0.00 2.27
7384 7628 4.947388 TGTGGTTGCTCTCTTGTAAAAAGT 59.053 37.500 0.00 0.00 0.00 2.66
7385 7629 6.116806 TGTGGTTGCTCTCTTGTAAAAAGTA 58.883 36.000 0.00 0.00 0.00 2.24
7386 7630 6.770785 TGTGGTTGCTCTCTTGTAAAAAGTAT 59.229 34.615 0.00 0.00 0.00 2.12
7387 7631 7.934665 TGTGGTTGCTCTCTTGTAAAAAGTATA 59.065 33.333 0.00 0.00 0.00 1.47
7388 7632 8.947115 GTGGTTGCTCTCTTGTAAAAAGTATAT 58.053 33.333 0.00 0.00 0.00 0.86
7389 7633 8.946085 TGGTTGCTCTCTTGTAAAAAGTATATG 58.054 33.333 0.00 0.00 0.00 1.78
7390 7634 7.910683 GGTTGCTCTCTTGTAAAAAGTATATGC 59.089 37.037 0.00 0.00 0.00 3.14
7391 7635 8.450964 GTTGCTCTCTTGTAAAAAGTATATGCA 58.549 33.333 0.00 0.00 0.00 3.96
7392 7636 8.737168 TGCTCTCTTGTAAAAAGTATATGCAT 57.263 30.769 3.79 3.79 0.00 3.96
7393 7637 8.615211 TGCTCTCTTGTAAAAAGTATATGCATG 58.385 33.333 10.16 0.00 0.00 4.06
7394 7638 8.616076 GCTCTCTTGTAAAAAGTATATGCATGT 58.384 33.333 10.16 5.06 0.00 3.21
7401 7645 9.416794 TGTAAAAAGTATATGCATGTTTTGTGG 57.583 29.630 10.16 0.00 0.00 4.17
7402 7646 9.418045 GTAAAAAGTATATGCATGTTTTGTGGT 57.582 29.630 10.16 0.00 0.00 4.16
7403 7647 8.900983 AAAAAGTATATGCATGTTTTGTGGTT 57.099 26.923 10.16 0.00 0.00 3.67
7404 7648 8.900983 AAAAGTATATGCATGTTTTGTGGTTT 57.099 26.923 10.16 0.00 0.00 3.27
7405 7649 8.900983 AAAGTATATGCATGTTTTGTGGTTTT 57.099 26.923 10.16 0.00 0.00 2.43
7406 7650 8.900983 AAGTATATGCATGTTTTGTGGTTTTT 57.099 26.923 10.16 0.00 0.00 1.94
7407 7651 8.532977 AGTATATGCATGTTTTGTGGTTTTTC 57.467 30.769 10.16 0.00 0.00 2.29
7408 7652 6.799926 ATATGCATGTTTTGTGGTTTTTCC 57.200 33.333 10.16 0.00 0.00 3.13
7409 7653 4.213564 TGCATGTTTTGTGGTTTTTCCT 57.786 36.364 0.00 0.00 37.07 3.36
7410 7654 5.344743 TGCATGTTTTGTGGTTTTTCCTA 57.655 34.783 0.00 0.00 37.07 2.94
7411 7655 5.112686 TGCATGTTTTGTGGTTTTTCCTAC 58.887 37.500 0.00 0.00 37.07 3.18
7412 7656 5.105146 TGCATGTTTTGTGGTTTTTCCTACT 60.105 36.000 0.00 0.00 37.07 2.57
7413 7657 5.234116 GCATGTTTTGTGGTTTTTCCTACTG 59.766 40.000 0.00 0.00 37.07 2.74
7414 7658 5.986501 TGTTTTGTGGTTTTTCCTACTGT 57.013 34.783 0.00 0.00 37.07 3.55
7415 7659 7.484975 CATGTTTTGTGGTTTTTCCTACTGTA 58.515 34.615 0.00 0.00 37.07 2.74
7416 7660 7.463961 TGTTTTGTGGTTTTTCCTACTGTAA 57.536 32.000 0.00 0.00 37.07 2.41
7417 7661 7.893658 TGTTTTGTGGTTTTTCCTACTGTAAA 58.106 30.769 0.00 0.00 37.07 2.01
7418 7662 8.365647 TGTTTTGTGGTTTTTCCTACTGTAAAA 58.634 29.630 0.00 0.00 37.07 1.52
7419 7663 9.205719 GTTTTGTGGTTTTTCCTACTGTAAAAA 57.794 29.630 0.00 0.00 37.07 1.94
7420 7664 8.989653 TTTGTGGTTTTTCCTACTGTAAAAAG 57.010 30.769 1.13 0.00 35.77 2.27
7421 7665 7.941431 TGTGGTTTTTCCTACTGTAAAAAGA 57.059 32.000 1.13 0.00 35.77 2.52
7422 7666 8.350852 TGTGGTTTTTCCTACTGTAAAAAGAA 57.649 30.769 1.13 0.00 35.77 2.52
7423 7667 8.245491 TGTGGTTTTTCCTACTGTAAAAAGAAC 58.755 33.333 1.13 4.29 35.77 3.01
7424 7668 8.245491 GTGGTTTTTCCTACTGTAAAAAGAACA 58.755 33.333 12.88 7.82 35.77 3.18
7425 7669 8.804204 TGGTTTTTCCTACTGTAAAAAGAACAA 58.196 29.630 12.88 4.28 35.77 2.83
7426 7670 9.642327 GGTTTTTCCTACTGTAAAAAGAACAAA 57.358 29.630 12.88 5.84 35.77 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.916703 TTGCCGCCAAGTGCCAAT 60.917 55.556 0.00 0.00 36.24 3.16
1 2 3.910490 GTTGCCGCCAAGTGCCAA 61.910 61.111 0.00 0.00 36.24 4.52
3 4 3.631487 GATGTTGCCGCCAAGTGCC 62.631 63.158 0.00 0.00 36.24 5.01
4 5 2.126346 GATGTTGCCGCCAAGTGC 60.126 61.111 0.00 0.00 0.00 4.40
5 6 1.210931 CAGATGTTGCCGCCAAGTG 59.789 57.895 0.00 0.00 0.00 3.16
6 7 0.036164 TACAGATGTTGCCGCCAAGT 59.964 50.000 0.00 0.00 0.00 3.16
7 8 0.729116 CTACAGATGTTGCCGCCAAG 59.271 55.000 0.00 0.00 0.00 3.61
57 58 2.812011 CAGGGGAACAGGAAAAACGTAG 59.188 50.000 0.00 0.00 0.00 3.51
68 69 2.196595 TGTAGGATTCCAGGGGAACAG 58.803 52.381 5.29 0.00 45.07 3.16
117 118 3.963129 AGTTGGTTCTGTTTGAGTTCCA 58.037 40.909 0.00 0.00 0.00 3.53
140 141 5.125097 CCCAATCATCTCTTTCAGAAACCAG 59.875 44.000 0.00 0.00 33.62 4.00
188 189 4.709397 TCAACAAGGAAAGAAAAGCTTGGA 59.291 37.500 0.00 0.00 36.80 3.53
193 194 6.276091 ACAGAATCAACAAGGAAAGAAAAGC 58.724 36.000 0.00 0.00 0.00 3.51
278 282 3.456277 GGCTGATCTCTCCCTCCTTTTTA 59.544 47.826 0.00 0.00 0.00 1.52
379 384 5.278022 GCTTCAGAAACTCGTCAGGAATTTT 60.278 40.000 0.00 0.00 0.00 1.82
419 425 3.817709 AGCTGCTAGTGGAGAATCTTC 57.182 47.619 0.00 0.00 33.10 2.87
570 581 6.371548 GTGCAACCATGAGTTTTCATCTACTA 59.628 38.462 0.00 0.00 42.12 1.82
572 583 5.048782 TGTGCAACCATGAGTTTTCATCTAC 60.049 40.000 0.00 0.00 35.94 2.59
573 584 5.069318 TGTGCAACCATGAGTTTTCATCTA 58.931 37.500 0.00 0.00 35.94 1.98
574 585 3.890756 TGTGCAACCATGAGTTTTCATCT 59.109 39.130 0.00 0.00 35.94 2.90
575 586 4.232221 CTGTGCAACCATGAGTTTTCATC 58.768 43.478 0.00 0.00 35.94 2.92
576 587 3.553508 GCTGTGCAACCATGAGTTTTCAT 60.554 43.478 0.00 0.00 38.71 2.57
578 589 2.223782 TGCTGTGCAACCATGAGTTTTC 60.224 45.455 0.00 0.00 36.18 2.29
579 590 1.755959 TGCTGTGCAACCATGAGTTTT 59.244 42.857 0.00 0.00 36.18 2.43
581 592 0.670162 GTGCTGTGCAACCATGAGTT 59.330 50.000 0.00 0.00 41.47 3.01
582 593 1.174712 GGTGCTGTGCAACCATGAGT 61.175 55.000 0.21 0.00 40.86 3.41
583 594 1.582968 GGTGCTGTGCAACCATGAG 59.417 57.895 0.21 0.00 40.86 2.90
749 762 3.953612 TGCCCTGAACTGCATTATAAAGG 59.046 43.478 0.00 0.00 31.31 3.11
752 765 4.338964 CACATGCCCTGAACTGCATTATAA 59.661 41.667 0.00 0.00 45.52 0.98
763 776 0.328926 TCATCTGCACATGCCCTGAA 59.671 50.000 0.49 0.00 41.18 3.02
764 777 0.107361 CTCATCTGCACATGCCCTGA 60.107 55.000 0.49 1.24 41.18 3.86
767 780 0.454600 CAACTCATCTGCACATGCCC 59.545 55.000 0.49 0.00 41.18 5.36
769 782 1.400846 CCTCAACTCATCTGCACATGC 59.599 52.381 0.00 0.00 42.50 4.06
770 783 2.937149 CTCCTCAACTCATCTGCACATG 59.063 50.000 0.00 0.00 0.00 3.21
771 784 2.570752 ACTCCTCAACTCATCTGCACAT 59.429 45.455 0.00 0.00 0.00 3.21
772 785 1.973515 ACTCCTCAACTCATCTGCACA 59.026 47.619 0.00 0.00 0.00 4.57
773 786 2.758736 ACTCCTCAACTCATCTGCAC 57.241 50.000 0.00 0.00 0.00 4.57
863 876 2.960688 AAGGCCGTGCTCTTCTCCC 61.961 63.158 0.00 0.00 0.00 4.30
881 894 2.342279 CGCCGAAGTTGGAGACCA 59.658 61.111 0.00 0.00 0.00 4.02
882 895 2.434359 CCGCCGAAGTTGGAGACC 60.434 66.667 0.00 0.00 0.00 3.85
954 967 1.076485 CCCCTTGGCATCTTCCTGG 60.076 63.158 0.00 0.00 0.00 4.45
1103 1116 4.858935 TCTTCGCCATTATAATTTGCAGC 58.141 39.130 14.11 0.00 0.00 5.25
1104 1117 6.017605 ACTCTCTTCGCCATTATAATTTGCAG 60.018 38.462 14.11 7.30 0.00 4.41
1207 1221 5.728471 TCACAAGCAAAAATGTTGGAGAAA 58.272 33.333 0.00 0.00 0.00 2.52
1210 1224 4.935702 TCTCACAAGCAAAAATGTTGGAG 58.064 39.130 0.00 0.00 0.00 3.86
1233 1247 6.313744 ACAGTTGTGCTATTTTTAGGTGTC 57.686 37.500 0.00 0.00 0.00 3.67
1235 1249 7.968405 GGATAACAGTTGTGCTATTTTTAGGTG 59.032 37.037 0.00 0.00 0.00 4.00
1236 1250 7.668052 TGGATAACAGTTGTGCTATTTTTAGGT 59.332 33.333 3.27 0.00 0.00 3.08
1237 1251 8.050778 TGGATAACAGTTGTGCTATTTTTAGG 57.949 34.615 3.27 0.00 0.00 2.69
1279 1334 2.032030 CGCGTATAATTGCAGGAAAGGG 60.032 50.000 0.00 0.00 0.00 3.95
1294 1374 4.142773 CCAATGTTACAAAGTTCCGCGTAT 60.143 41.667 4.92 0.00 0.00 3.06
1297 1377 2.031508 ACCAATGTTACAAAGTTCCGCG 60.032 45.455 0.00 0.00 0.00 6.46
1316 1396 5.014202 ACAAATTCTGTTACCCCACATACC 58.986 41.667 0.00 0.00 32.99 2.73
1355 1435 4.103785 AGGTCTGTGCCAGCATATCTAAAT 59.896 41.667 0.00 0.00 0.00 1.40
1371 1451 5.499004 TGCCATTAAACTCTAAGGTCTGT 57.501 39.130 0.00 0.00 0.00 3.41
1495 1575 3.244814 CAGATGAAGTCGAATGCAGTAGC 59.755 47.826 0.00 0.00 42.57 3.58
1545 1625 5.076182 TGATCTACCCAACAAAAGAATGCA 58.924 37.500 0.00 0.00 0.00 3.96
2351 2431 3.857157 AGTGAAGGTAACAGCTCCAAA 57.143 42.857 0.00 0.00 41.41 3.28
2774 2854 9.483916 AAGTTATTATGGCAAAGGTTTAACAAC 57.516 29.630 0.00 0.00 0.00 3.32
2994 3074 7.015487 TGGACCAGAAGAAAAATGATTGTTCAT 59.985 33.333 10.48 0.00 44.62 2.57
3104 3184 2.533266 ACATAAGCTGGTAGATGGCG 57.467 50.000 0.00 0.00 0.00 5.69
3108 3188 2.170607 ACGCCAACATAAGCTGGTAGAT 59.829 45.455 0.00 0.00 33.41 1.98
3112 3192 1.269448 CAAACGCCAACATAAGCTGGT 59.731 47.619 0.00 0.00 33.41 4.00
3230 3310 8.786826 AAACTGTCATTTCCGATAATGTAAGA 57.213 30.769 14.45 0.00 36.95 2.10
3264 3344 5.248934 TCCATCTGGATTTTCCTGCAAAAAT 59.751 36.000 8.49 8.49 40.60 1.82
3279 3359 2.630889 AGACACTCCTTCCATCTGGA 57.369 50.000 0.00 0.00 43.73 3.86
3581 3661 7.624360 TTTCTGTATCCTGCATCGTATTTTT 57.376 32.000 0.00 0.00 0.00 1.94
3658 3739 4.095483 CCTTTGGCTAGTGCACTGATAAAG 59.905 45.833 29.57 26.60 41.91 1.85
3780 3861 7.602517 AGTAACAAGATCTCACAAGCATAAC 57.397 36.000 0.00 0.00 0.00 1.89
3802 3883 1.699634 AGGTGGTGCACTATGTCAAGT 59.300 47.619 17.98 0.00 34.40 3.16
3954 4041 6.981559 TCAACATAATGCGCAATGTACTAGTA 59.018 34.615 23.97 0.00 35.30 1.82
4261 4393 3.701040 ACCATCAAGTTTTTGCTCACAGT 59.299 39.130 0.00 0.00 34.21 3.55
4352 4499 3.625764 CCGTCCCACAATATAAGGTGTTG 59.374 47.826 6.44 0.00 35.30 3.33
4357 4504 2.038557 CCCTCCGTCCCACAATATAAGG 59.961 54.545 0.00 0.00 0.00 2.69
4368 4515 3.303049 TCTTTATTACTCCCTCCGTCCC 58.697 50.000 0.00 0.00 0.00 4.46
4443 4590 9.048446 GGACCACGCTAAAATTATAAAGATACA 57.952 33.333 0.00 0.00 0.00 2.29
4674 4825 7.931948 GCCCTCTAAAGAATGTTATAGCAGTTA 59.068 37.037 0.00 0.00 0.00 2.24
4807 4967 7.287512 TGCCATGCAAATATATGTGTGTTAT 57.712 32.000 4.80 0.00 34.76 1.89
4896 5056 9.204570 AGTTAGCAAACTATTACAGTGTTACTG 57.795 33.333 0.00 7.38 46.44 2.74
5211 5372 7.148239 ACAGCCTCTTTTATTTGAAATACCTCG 60.148 37.037 0.00 0.00 0.00 4.63
5277 5438 6.127842 ACACCTTCAGAACGTTTTTATGTGTT 60.128 34.615 0.46 0.00 0.00 3.32
5465 5630 1.796796 GCAGCCGAGGTAAGCTTTG 59.203 57.895 3.20 0.00 37.18 2.77
5547 5712 7.809665 TGATAACATGTCTTGTGTTTCAGATG 58.190 34.615 0.00 0.00 40.13 2.90
5606 5771 3.118592 AGCTTCTTGTAGGCGCTCTTATT 60.119 43.478 7.64 0.00 0.00 1.40
5895 6060 2.170166 TGGGCTTTTATTGCAGGTCAG 58.830 47.619 0.00 0.00 0.00 3.51
6015 6220 5.166398 ACGAGTAATTTGAAACGTAGGGAG 58.834 41.667 0.00 0.00 32.42 4.30
6016 6221 5.138125 ACGAGTAATTTGAAACGTAGGGA 57.862 39.130 0.00 0.00 32.42 4.20
6017 6222 4.030977 CGACGAGTAATTTGAAACGTAGGG 59.969 45.833 0.00 0.00 34.26 3.53
6018 6223 4.489841 GCGACGAGTAATTTGAAACGTAGG 60.490 45.833 0.00 0.00 34.26 3.18
6019 6224 4.088923 TGCGACGAGTAATTTGAAACGTAG 59.911 41.667 0.00 0.00 34.26 3.51
6020 6225 3.980134 TGCGACGAGTAATTTGAAACGTA 59.020 39.130 0.00 0.00 34.26 3.57
6021 6226 2.796031 TGCGACGAGTAATTTGAAACGT 59.204 40.909 0.00 0.00 36.71 3.99
6022 6227 3.120616 TCTGCGACGAGTAATTTGAAACG 59.879 43.478 0.00 0.00 0.00 3.60
6023 6228 4.640805 TCTGCGACGAGTAATTTGAAAC 57.359 40.909 0.00 0.00 0.00 2.78
6024 6229 5.660629 TTTCTGCGACGAGTAATTTGAAA 57.339 34.783 0.00 0.00 0.00 2.69
6025 6230 5.390461 CCATTTCTGCGACGAGTAATTTGAA 60.390 40.000 0.00 0.00 0.00 2.69
6026 6231 4.092821 CCATTTCTGCGACGAGTAATTTGA 59.907 41.667 0.00 0.00 0.00 2.69
6027 6232 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
6028 6233 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
6029 6234 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
6030 6235 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
6031 6236 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
6032 6237 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
6033 6238 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
6034 6239 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
6035 6240 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
6036 6241 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
6037 6242 4.811024 TCAAGATACATCCATTTCTGCGAC 59.189 41.667 0.00 0.00 0.00 5.19
6038 6243 5.022282 TCAAGATACATCCATTTCTGCGA 57.978 39.130 0.00 0.00 0.00 5.10
6039 6244 5.295292 AGTTCAAGATACATCCATTTCTGCG 59.705 40.000 0.00 0.00 0.00 5.18
6040 6245 6.690194 AGTTCAAGATACATCCATTTCTGC 57.310 37.500 0.00 0.00 0.00 4.26
6066 6271 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
6067 6272 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
6068 6273 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
6069 6274 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
6070 6275 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
6071 6276 6.393990 GTCGCAGAAATGGATGTATCTAGAT 58.606 40.000 10.73 10.73 39.69 1.98
6072 6277 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
6073 6278 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
6074 6279 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
6075 6280 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
6076 6281 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
6077 6282 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
6078 6283 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
6079 6284 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
6080 6285 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
6081 6286 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
6082 6287 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
6083 6288 3.301835 CGAATTACTCGTCGCAGAAATGG 60.302 47.826 0.00 0.00 42.89 3.16
6084 6289 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
6085 6290 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
6086 6291 2.095110 TCCGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 46.65 2.52
6087 6292 1.469703 TCCGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 46.65 3.02
6088 6293 1.089112 TCCGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 46.65 4.26
6089 6294 1.582502 GTTCCGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 46.65 5.18
6090 6295 1.621107 GTTCCGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 46.65 5.10
6091 6296 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.000 0.00 0.00 46.65 5.19
6092 6297 1.186030 CCGTTCCGAATTACTCGTCG 58.814 55.000 0.00 0.00 46.65 5.12
6093 6298 2.448219 CTCCGTTCCGAATTACTCGTC 58.552 52.381 0.00 0.00 46.65 4.20
6094 6299 1.133790 CCTCCGTTCCGAATTACTCGT 59.866 52.381 0.00 0.00 46.65 4.18
6096 6301 1.753073 TCCCTCCGTTCCGAATTACTC 59.247 52.381 0.00 0.00 0.00 2.59
6097 6302 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
6098 6303 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
6099 6304 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
6100 6305 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
6101 6306 1.687123 CATACTCCCTCCGTTCCGAAT 59.313 52.381 0.00 0.00 0.00 3.34
6102 6307 1.108776 CATACTCCCTCCGTTCCGAA 58.891 55.000 0.00 0.00 0.00 4.30
6103 6308 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
6104 6309 1.683943 TACATACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
6105 6310 3.228453 TGATACATACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
6106 6311 4.931661 TTGATACATACTCCCTCCGTTC 57.068 45.455 0.00 0.00 0.00 3.95
6107 6312 6.497259 ACATATTGATACATACTCCCTCCGTT 59.503 38.462 0.00 0.00 0.00 4.44
6108 6313 6.017192 ACATATTGATACATACTCCCTCCGT 58.983 40.000 0.00 0.00 0.00 4.69
6109 6314 6.333416 CACATATTGATACATACTCCCTCCG 58.667 44.000 0.00 0.00 0.00 4.63
6110 6315 6.644347 CCACATATTGATACATACTCCCTCC 58.356 44.000 0.00 0.00 0.00 4.30
6111 6316 6.109359 GCCACATATTGATACATACTCCCTC 58.891 44.000 0.00 0.00 0.00 4.30
6112 6317 5.547666 TGCCACATATTGATACATACTCCCT 59.452 40.000 0.00 0.00 0.00 4.20
6113 6318 5.804639 TGCCACATATTGATACATACTCCC 58.195 41.667 0.00 0.00 0.00 4.30
6114 6319 6.881065 ACATGCCACATATTGATACATACTCC 59.119 38.462 0.00 0.00 0.00 3.85
6115 6320 7.624974 GCACATGCCACATATTGATACATACTC 60.625 40.741 0.00 0.00 34.31 2.59
6116 6321 6.149973 GCACATGCCACATATTGATACATACT 59.850 38.462 0.00 0.00 34.31 2.12
6117 6322 6.317088 GCACATGCCACATATTGATACATAC 58.683 40.000 0.00 0.00 34.31 2.39
6118 6323 6.499234 GCACATGCCACATATTGATACATA 57.501 37.500 0.00 0.00 34.31 2.29
6119 6324 5.381174 GCACATGCCACATATTGATACAT 57.619 39.130 0.00 0.00 34.31 2.29
6120 6325 4.834357 GCACATGCCACATATTGATACA 57.166 40.909 0.00 0.00 34.31 2.29
6138 6343 6.313164 GTGAAAGAGGTTTACTAGTATGGCAC 59.687 42.308 2.79 0.00 0.00 5.01
6152 6357 2.900546 AGACATCGGAGTGAAAGAGGTT 59.099 45.455 0.00 0.00 0.00 3.50
6175 6380 8.699749 GTTGGCAAGTTCTGTAATTTTGTAATC 58.300 33.333 0.00 0.00 0.00 1.75
6228 6434 5.188555 TGCTTCTCTCTCAACCATATCTGTT 59.811 40.000 0.00 0.00 0.00 3.16
6283 6489 3.862267 CAGTGAAGAGGCTCGTTATCTTG 59.138 47.826 9.22 6.22 33.53 3.02
6296 6502 5.562506 ATGATGTCATTTGCAGTGAAGAG 57.437 39.130 5.56 0.00 31.37 2.85
6310 6516 5.375773 TCAGTTCCACAGAAAATGATGTCA 58.624 37.500 0.00 0.00 32.58 3.58
6373 6586 5.473504 AGACAAACATGAATGACACCTTACC 59.526 40.000 0.00 0.00 0.00 2.85
6374 6587 6.560253 AGACAAACATGAATGACACCTTAC 57.440 37.500 0.00 0.00 0.00 2.34
6375 6588 6.371548 GCTAGACAAACATGAATGACACCTTA 59.628 38.462 0.00 0.00 0.00 2.69
6376 6589 5.182001 GCTAGACAAACATGAATGACACCTT 59.818 40.000 0.00 0.00 0.00 3.50
6393 6606 8.726988 GTTTATTCTTGGTGTAAATGCTAGACA 58.273 33.333 0.00 0.00 0.00 3.41
6394 6607 8.726988 TGTTTATTCTTGGTGTAAATGCTAGAC 58.273 33.333 0.00 0.00 0.00 2.59
6419 6632 3.181497 GCCTGTAATAGCAACATGGTGTG 60.181 47.826 13.35 0.55 0.00 3.82
6420 6633 3.016736 GCCTGTAATAGCAACATGGTGT 58.983 45.455 13.35 1.76 0.00 4.16
6421 6634 3.016031 TGCCTGTAATAGCAACATGGTG 58.984 45.455 6.32 6.32 35.69 4.17
6422 6635 3.364460 TGCCTGTAATAGCAACATGGT 57.636 42.857 0.00 0.00 35.69 3.55
6423 6636 3.005050 CCATGCCTGTAATAGCAACATGG 59.995 47.826 4.85 4.85 43.36 3.66
6424 6637 3.884693 TCCATGCCTGTAATAGCAACATG 59.115 43.478 0.00 0.00 43.36 3.21
6425 6638 4.169059 TCCATGCCTGTAATAGCAACAT 57.831 40.909 0.00 0.00 43.36 2.71
6426 6639 3.643199 TCCATGCCTGTAATAGCAACA 57.357 42.857 0.00 0.00 43.36 3.33
6427 6640 3.503748 GGATCCATGCCTGTAATAGCAAC 59.496 47.826 6.95 0.00 43.36 4.17
6451 6664 0.179032 TCTTCTGCGCCCTTCACAAA 60.179 50.000 4.18 0.00 0.00 2.83
6466 6679 3.023119 TCTGTGCTCATCTCTCCTCTTC 58.977 50.000 0.00 0.00 0.00 2.87
6472 6685 2.483363 CCATGGTCTGTGCTCATCTCTC 60.483 54.545 2.57 0.00 0.00 3.20
6478 6691 1.278537 TGATCCATGGTCTGTGCTCA 58.721 50.000 12.58 2.31 0.00 4.26
6488 6701 5.722263 TGCATTTACAAAGTTGATCCATGG 58.278 37.500 4.97 4.97 0.00 3.66
6547 6761 2.351706 TGTACAACAAAGGGGTGTCC 57.648 50.000 0.00 0.00 0.00 4.02
6575 6789 2.636412 CGGTGCCGTCTCTTCTGGA 61.636 63.158 1.93 0.00 34.35 3.86
6576 6790 2.125912 CGGTGCCGTCTCTTCTGG 60.126 66.667 1.93 0.00 34.35 3.86
6578 6792 3.288308 CTGCGGTGCCGTCTCTTCT 62.288 63.158 12.46 0.00 42.09 2.85
6579 6793 2.564553 ATCTGCGGTGCCGTCTCTTC 62.565 60.000 12.46 0.00 42.09 2.87
6580 6794 1.320344 TATCTGCGGTGCCGTCTCTT 61.320 55.000 12.46 0.00 42.09 2.85
6583 6797 0.530650 CATTATCTGCGGTGCCGTCT 60.531 55.000 12.46 0.00 42.09 4.18
6584 6798 0.810031 ACATTATCTGCGGTGCCGTC 60.810 55.000 12.46 5.43 42.09 4.79
6585 6799 0.392461 AACATTATCTGCGGTGCCGT 60.392 50.000 12.46 0.00 42.09 5.68
6586 6800 0.732571 AAACATTATCTGCGGTGCCG 59.267 50.000 6.22 6.22 43.09 5.69
6587 6801 2.479560 GGAAAACATTATCTGCGGTGCC 60.480 50.000 0.00 0.00 0.00 5.01
6589 6803 3.731867 GCAGGAAAACATTATCTGCGGTG 60.732 47.826 0.00 0.00 40.81 4.94
6590 6804 2.423538 GCAGGAAAACATTATCTGCGGT 59.576 45.455 0.00 0.00 40.81 5.68
6591 6805 3.070429 GCAGGAAAACATTATCTGCGG 57.930 47.619 0.00 0.00 40.81 5.69
6629 6843 9.406113 AGAAGACTATTTACATTAGGTACGACT 57.594 33.333 0.00 0.00 0.00 4.18
6709 6927 2.250939 ACACACCGGCACACAATCG 61.251 57.895 0.00 0.00 0.00 3.34
6710 6928 1.282570 CACACACCGGCACACAATC 59.717 57.895 0.00 0.00 0.00 2.67
6713 6931 2.821810 CACACACACCGGCACACA 60.822 61.111 0.00 0.00 0.00 3.72
6714 6932 2.822255 ACACACACACCGGCACAC 60.822 61.111 0.00 0.00 0.00 3.82
6716 6934 2.822255 ACACACACACACCGGCAC 60.822 61.111 0.00 0.00 0.00 5.01
6717 6935 2.821810 CACACACACACACCGGCA 60.822 61.111 0.00 0.00 0.00 5.69
6718 6936 2.822255 ACACACACACACACCGGC 60.822 61.111 0.00 0.00 0.00 6.13
6719 6937 1.743623 ACACACACACACACACCGG 60.744 57.895 0.00 0.00 0.00 5.28
6720 6938 1.295357 ACACACACACACACACACCG 61.295 55.000 0.00 0.00 0.00 4.94
6722 6940 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6723 6941 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6724 6942 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6725 6943 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6726 6944 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6727 6945 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6728 6946 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6729 6947 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6730 6948 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6731 6949 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6732 6950 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6733 6951 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6734 6952 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6735 6953 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6736 6954 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6737 6955 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6738 6956 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6739 6957 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6740 6958 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6741 6959 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6742 6960 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6743 6961 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6744 6962 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6745 6963 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6746 6964 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6747 6965 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6748 6966 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6749 6967 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6750 6968 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
6751 6969 1.884235 TTCACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
6752 6970 3.621268 AGTATTCACACACACACACACAC 59.379 43.478 0.00 0.00 0.00 3.82
6753 6971 3.867857 AGTATTCACACACACACACACA 58.132 40.909 0.00 0.00 0.00 3.72
6754 6972 4.331443 TCAAGTATTCACACACACACACAC 59.669 41.667 0.00 0.00 0.00 3.82
6755 6973 4.331443 GTCAAGTATTCACACACACACACA 59.669 41.667 0.00 0.00 0.00 3.72
6756 6974 4.331443 TGTCAAGTATTCACACACACACAC 59.669 41.667 0.00 0.00 0.00 3.82
6757 6975 4.508662 TGTCAAGTATTCACACACACACA 58.491 39.130 0.00 0.00 0.00 3.72
6792 7010 4.095410 TGCGAATTTATGGAAGTTGCTG 57.905 40.909 0.00 0.00 42.00 4.41
6816 7034 3.941483 CCCGATTTCAGTTTCACTATGCT 59.059 43.478 0.00 0.00 0.00 3.79
6862 7080 7.041780 TGTTGAGCTTTGATTCTACACTTCTTC 60.042 37.037 0.00 0.00 0.00 2.87
6908 7146 2.715268 CTTTTGTTGTTCATCACGCGT 58.285 42.857 5.58 5.58 0.00 6.01
6912 7150 3.301771 GCGTTGCTTTTGTTGTTCATCAC 60.302 43.478 0.00 0.00 0.00 3.06
6915 7153 2.886081 TGCGTTGCTTTTGTTGTTCAT 58.114 38.095 0.00 0.00 0.00 2.57
6977 7215 0.180406 ATCAGGTGCACCCGTATTCC 59.820 55.000 32.29 4.74 38.74 3.01
6978 7216 1.299541 CATCAGGTGCACCCGTATTC 58.700 55.000 32.29 5.51 38.74 1.75
7117 7355 1.613610 CGTAGTGGAGGGAGGAGGA 59.386 63.158 0.00 0.00 0.00 3.71
7169 7407 3.345808 CGTGGTTGGTCTGGCGTG 61.346 66.667 0.00 0.00 0.00 5.34
7185 7423 0.460284 CAACCCGGACCTCTGATTCG 60.460 60.000 0.73 0.00 0.00 3.34
7239 7478 3.053291 GTGCACATTTCCGCCGGA 61.053 61.111 13.17 0.00 0.00 5.14
7251 7490 1.468054 GGCTCGATTCAAATGGTGCAC 60.468 52.381 8.80 8.80 36.00 4.57
7348 7592 6.697395 AGAGCAACCACAAAAAGTAAAAAGT 58.303 32.000 0.00 0.00 0.00 2.66
7349 7593 7.035612 AGAGAGCAACCACAAAAAGTAAAAAG 58.964 34.615 0.00 0.00 0.00 2.27
7352 7596 6.071616 ACAAGAGAGCAACCACAAAAAGTAAA 60.072 34.615 0.00 0.00 0.00 2.01
7353 7597 5.417580 ACAAGAGAGCAACCACAAAAAGTAA 59.582 36.000 0.00 0.00 0.00 2.24
7354 7598 4.947388 ACAAGAGAGCAACCACAAAAAGTA 59.053 37.500 0.00 0.00 0.00 2.24
7355 7599 3.763897 ACAAGAGAGCAACCACAAAAAGT 59.236 39.130 0.00 0.00 0.00 2.66
7356 7600 4.376340 ACAAGAGAGCAACCACAAAAAG 57.624 40.909 0.00 0.00 0.00 2.27
7375 7619 9.416794 CCACAAAACATGCATATACTTTTTACA 57.583 29.630 0.00 0.00 0.00 2.41
7376 7620 9.418045 ACCACAAAACATGCATATACTTTTTAC 57.582 29.630 0.00 0.00 0.00 2.01
7377 7621 9.988815 AACCACAAAACATGCATATACTTTTTA 57.011 25.926 0.00 0.00 0.00 1.52
7378 7622 8.900983 AACCACAAAACATGCATATACTTTTT 57.099 26.923 0.00 0.00 0.00 1.94
7379 7623 8.900983 AAACCACAAAACATGCATATACTTTT 57.099 26.923 0.00 0.00 0.00 2.27
7380 7624 8.900983 AAAACCACAAAACATGCATATACTTT 57.099 26.923 0.00 0.00 0.00 2.66
7381 7625 8.900983 AAAAACCACAAAACATGCATATACTT 57.099 26.923 0.00 0.00 0.00 2.24
7382 7626 7.602265 GGAAAAACCACAAAACATGCATATACT 59.398 33.333 0.00 0.00 38.79 2.12
7383 7627 7.602265 AGGAAAAACCACAAAACATGCATATAC 59.398 33.333 0.00 0.00 42.04 1.47
7384 7628 7.675062 AGGAAAAACCACAAAACATGCATATA 58.325 30.769 0.00 0.00 42.04 0.86
7385 7629 6.532826 AGGAAAAACCACAAAACATGCATAT 58.467 32.000 0.00 0.00 42.04 1.78
7386 7630 5.923204 AGGAAAAACCACAAAACATGCATA 58.077 33.333 0.00 0.00 42.04 3.14
7387 7631 4.779696 AGGAAAAACCACAAAACATGCAT 58.220 34.783 0.00 0.00 42.04 3.96
7388 7632 4.213564 AGGAAAAACCACAAAACATGCA 57.786 36.364 0.00 0.00 42.04 3.96
7389 7633 5.234116 CAGTAGGAAAAACCACAAAACATGC 59.766 40.000 0.00 0.00 42.04 4.06
7390 7634 6.337356 ACAGTAGGAAAAACCACAAAACATG 58.663 36.000 0.00 0.00 42.04 3.21
7391 7635 6.538945 ACAGTAGGAAAAACCACAAAACAT 57.461 33.333 0.00 0.00 42.04 2.71
7392 7636 5.986501 ACAGTAGGAAAAACCACAAAACA 57.013 34.783 0.00 0.00 42.04 2.83
7393 7637 8.760103 TTTTACAGTAGGAAAAACCACAAAAC 57.240 30.769 0.00 0.00 42.04 2.43
7394 7638 9.425577 CTTTTTACAGTAGGAAAAACCACAAAA 57.574 29.630 0.00 0.00 42.04 2.44
7395 7639 8.804204 TCTTTTTACAGTAGGAAAAACCACAAA 58.196 29.630 0.00 0.00 42.04 2.83
7396 7640 8.350852 TCTTTTTACAGTAGGAAAAACCACAA 57.649 30.769 0.00 0.00 42.04 3.33
7397 7641 7.941431 TCTTTTTACAGTAGGAAAAACCACA 57.059 32.000 0.00 0.00 42.04 4.17
7398 7642 8.245491 TGTTCTTTTTACAGTAGGAAAAACCAC 58.755 33.333 0.00 0.00 42.04 4.16
7399 7643 8.350852 TGTTCTTTTTACAGTAGGAAAAACCA 57.649 30.769 0.00 0.00 42.04 3.67
7400 7644 9.642327 TTTGTTCTTTTTACAGTAGGAAAAACC 57.358 29.630 0.00 0.00 32.56 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.