Multiple sequence alignment - TraesCS1A01G230000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G230000 chr1A 100.000 3101 0 0 1 3101 402805765 402808865 0.000000e+00 5727
1 TraesCS1A01G230000 chr1D 96.719 2286 55 8 1 2274 320397257 320394980 0.000000e+00 3788
2 TraesCS1A01G230000 chr1D 93.678 522 33 0 2580 3101 320394982 320394461 0.000000e+00 782
3 TraesCS1A01G230000 chr1D 96.393 305 11 0 2276 2580 361354955 361354651 1.280000e-138 503
4 TraesCS1A01G230000 chr1B 95.584 2287 81 9 1 2274 433433510 433431231 0.000000e+00 3646
5 TraesCS1A01G230000 chr1B 93.295 522 34 1 2580 3101 433431233 433430713 0.000000e+00 769
6 TraesCS1A01G230000 chr6A 97.705 305 7 0 2276 2580 487277372 487277676 2.740000e-145 525
7 TraesCS1A01G230000 chr5A 97.705 305 7 0 2276 2580 248528246 248527942 2.740000e-145 525
8 TraesCS1A01G230000 chr4A 97.705 305 7 0 2276 2580 178778942 178779246 2.740000e-145 525
9 TraesCS1A01G230000 chr4A 96.732 306 9 1 2276 2580 629421840 629422145 2.760000e-140 508
10 TraesCS1A01G230000 chr7A 96.463 311 11 0 2276 2586 235454550 235454240 5.930000e-142 514
11 TraesCS1A01G230000 chr2A 97.059 306 7 2 2276 2580 63805030 63804726 5.930000e-142 514
12 TraesCS1A01G230000 chr7D 95.793 309 13 0 2276 2584 444357228 444356920 1.660000e-137 499
13 TraesCS1A01G230000 chr2B 95.793 309 13 0 2276 2584 247519320 247519628 1.660000e-137 499


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G230000 chr1A 402805765 402808865 3100 False 5727.0 5727 100.0000 1 3101 1 chr1A.!!$F1 3100
1 TraesCS1A01G230000 chr1D 320394461 320397257 2796 True 2285.0 3788 95.1985 1 3101 2 chr1D.!!$R2 3100
2 TraesCS1A01G230000 chr1B 433430713 433433510 2797 True 2207.5 3646 94.4395 1 3101 2 chr1B.!!$R1 3100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 179 1.072505 GTTTGGACCTTCTCGGCCA 59.927 57.895 2.24 0.0 37.24 5.36 F
587 601 2.093890 CAGTGCTATGTTGGAATGGCA 58.906 47.619 0.00 0.0 41.18 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1415 1.882623 GGAGCTTTGTTCTTGTCAGGG 59.117 52.381 0.0 0.0 0.00 4.45 R
2475 2489 0.034186 ATTCCAGAAATCCGCTGCCA 60.034 50.000 0.0 0.0 32.06 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.584406 TGGATCGATCAGGCATAGGATTT 59.416 43.478 25.93 0.00 0.00 2.17
96 99 4.099573 TCCTCTAGCCCAAATTCTAGAACG 59.900 45.833 7.48 0.00 40.29 3.95
98 101 2.420058 AGCCCAAATTCTAGAACGGG 57.580 50.000 23.47 23.47 36.71 5.28
102 105 2.017049 CCAAATTCTAGAACGGGCAGG 58.983 52.381 7.48 0.91 0.00 4.85
109 112 5.367945 TTCTAGAACGGGCAGGATTTAAT 57.632 39.130 0.00 0.00 0.00 1.40
174 179 1.072505 GTTTGGACCTTCTCGGCCA 59.927 57.895 2.24 0.00 37.24 5.36
260 274 4.963878 CGGAGCCTGGCTTTATGT 57.036 55.556 24.26 0.00 39.88 2.29
345 359 2.345641 CGAGGCTGTCAGTTTACGATTG 59.654 50.000 0.93 0.00 0.00 2.67
424 438 3.157087 GGAGCTCAGGAAAACATTTCCA 58.843 45.455 20.63 3.79 41.00 3.53
587 601 2.093890 CAGTGCTATGTTGGAATGGCA 58.906 47.619 0.00 0.00 41.18 4.92
652 666 5.239306 TGACATCAAGAAAATTCGCTCAACT 59.761 36.000 0.00 0.00 0.00 3.16
668 682 5.339611 CGCTCAACTTATGTAGTTTGTTTGC 59.660 40.000 0.00 0.00 44.73 3.68
813 827 9.516314 GCTATTTGTTTACATCAACTAATTCCC 57.484 33.333 0.00 0.00 34.96 3.97
889 903 9.529325 TCTTATGAATCCATAGTTTGTTAGTCG 57.471 33.333 0.00 0.00 36.68 4.18
902 916 8.200364 AGTTTGTTAGTCGCACTAAAAACTTA 57.800 30.769 22.26 8.74 41.84 2.24
1076 1090 2.675583 AGCATCTGGAGATAGACAGCA 58.324 47.619 0.00 0.00 35.00 4.41
1092 1106 5.947443 AGACAGCAAGCAGACAAATTTATC 58.053 37.500 0.00 0.00 0.00 1.75
1272 1286 9.449719 CCTTCTAATGTTGATAAAGGTTACACT 57.550 33.333 0.00 0.00 0.00 3.55
1401 1415 3.057946 GGAGGCTGTCACTGAAAATTCAC 60.058 47.826 0.00 0.00 32.90 3.18
1416 1430 5.930837 AAATTCACCCTGACAAGAACAAA 57.069 34.783 0.00 0.00 0.00 2.83
1431 1445 1.378250 CAAAGCTCCTGGGGCAGAG 60.378 63.158 22.77 5.48 32.44 3.35
1671 1685 8.459911 TCTTCTATGGTACTCGTGATAATTCA 57.540 34.615 0.00 0.00 0.00 2.57
1866 1880 3.189287 CCCTGCACAAGACATACAACTTC 59.811 47.826 0.00 0.00 0.00 3.01
2209 2223 7.040755 TGTTCATTTCAATCGAACTGTATGGTT 60.041 33.333 0.00 0.00 39.77 3.67
2215 2229 2.267426 TCGAACTGTATGGTTGCATCG 58.733 47.619 0.00 0.00 0.00 3.84
2266 2280 5.316987 ACATTTCCCTGTTTCTCAGTAAGG 58.683 41.667 0.00 0.00 42.19 2.69
2274 2288 4.724399 TGTTTCTCAGTAAGGGCATTCAA 58.276 39.130 0.00 0.00 0.00 2.69
2275 2289 4.761739 TGTTTCTCAGTAAGGGCATTCAAG 59.238 41.667 0.00 0.00 0.00 3.02
2276 2290 2.991250 TCTCAGTAAGGGCATTCAAGC 58.009 47.619 0.00 0.00 0.00 4.01
2285 2299 3.520187 GCATTCAAGCCCTGTTTGG 57.480 52.632 0.00 0.00 0.00 3.28
2286 2300 0.681175 GCATTCAAGCCCTGTTTGGT 59.319 50.000 0.00 0.00 0.00 3.67
2287 2301 1.070601 GCATTCAAGCCCTGTTTGGTT 59.929 47.619 0.00 0.00 0.00 3.67
2288 2302 2.867647 GCATTCAAGCCCTGTTTGGTTC 60.868 50.000 0.00 0.00 0.00 3.62
2289 2303 1.028905 TTCAAGCCCTGTTTGGTTCG 58.971 50.000 0.00 0.00 0.00 3.95
2290 2304 0.821711 TCAAGCCCTGTTTGGTTCGG 60.822 55.000 0.00 0.00 0.00 4.30
2291 2305 2.200337 AAGCCCTGTTTGGTTCGGC 61.200 57.895 0.00 0.00 40.03 5.54
2292 2306 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
2293 2307 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
2294 2308 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
2295 2309 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
2296 2310 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
2297 2311 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
2298 2312 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
2299 2313 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
2300 2314 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
2301 2315 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
2302 2316 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
2303 2317 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
2304 2318 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
2305 2319 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
2306 2320 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
2307 2321 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
2308 2322 2.747446 TCGGCTGTGGATTTCTAAAAGC 59.253 45.455 0.00 0.00 0.00 3.51
2309 2323 2.487762 CGGCTGTGGATTTCTAAAAGCA 59.512 45.455 0.00 0.00 0.00 3.91
2310 2324 3.426695 CGGCTGTGGATTTCTAAAAGCAG 60.427 47.826 0.00 0.00 0.00 4.24
2311 2325 3.505836 GCTGTGGATTTCTAAAAGCAGC 58.494 45.455 0.00 0.00 40.66 5.25
2312 2326 3.192212 GCTGTGGATTTCTAAAAGCAGCT 59.808 43.478 0.00 0.00 43.08 4.24
2313 2327 4.396166 GCTGTGGATTTCTAAAAGCAGCTA 59.604 41.667 0.00 0.00 43.08 3.32
2314 2328 5.067023 GCTGTGGATTTCTAAAAGCAGCTAT 59.933 40.000 0.00 0.00 43.08 2.97
2315 2329 6.441093 TGTGGATTTCTAAAAGCAGCTATG 57.559 37.500 0.00 0.00 0.00 2.23
2316 2330 6.179756 TGTGGATTTCTAAAAGCAGCTATGA 58.820 36.000 0.00 0.00 0.00 2.15
2317 2331 6.658816 TGTGGATTTCTAAAAGCAGCTATGAA 59.341 34.615 0.00 0.00 0.00 2.57
2318 2332 7.176515 TGTGGATTTCTAAAAGCAGCTATGAAA 59.823 33.333 0.00 5.04 0.00 2.69
2319 2333 8.028938 GTGGATTTCTAAAAGCAGCTATGAAAA 58.971 33.333 0.00 0.00 0.00 2.29
2320 2334 8.584157 TGGATTTCTAAAAGCAGCTATGAAAAA 58.416 29.630 0.00 0.00 0.00 1.94
2321 2335 9.591792 GGATTTCTAAAAGCAGCTATGAAAAAT 57.408 29.630 0.00 0.00 0.00 1.82
2324 2338 9.630098 TTTCTAAAAGCAGCTATGAAAAATCTG 57.370 29.630 0.00 0.00 0.00 2.90
2328 2342 4.367386 GCAGCTATGAAAAATCTGCTGT 57.633 40.909 13.13 0.00 46.44 4.40
2329 2343 4.103357 GCAGCTATGAAAAATCTGCTGTG 58.897 43.478 13.13 0.00 46.44 3.66
2330 2344 4.142534 GCAGCTATGAAAAATCTGCTGTGA 60.143 41.667 13.13 0.00 46.44 3.58
2331 2345 5.620654 GCAGCTATGAAAAATCTGCTGTGAA 60.621 40.000 13.13 0.00 46.44 3.18
2332 2346 6.384224 CAGCTATGAAAAATCTGCTGTGAAA 58.616 36.000 0.00 0.00 41.78 2.69
2333 2347 6.864685 CAGCTATGAAAAATCTGCTGTGAAAA 59.135 34.615 0.00 0.00 41.78 2.29
2334 2348 7.383029 CAGCTATGAAAAATCTGCTGTGAAAAA 59.617 33.333 0.00 0.00 41.78 1.94
2356 2370 8.791327 AAAAACAGTTGTGGAAAATCTGATTT 57.209 26.923 9.76 9.76 34.41 2.17
2357 2371 7.775397 AAACAGTTGTGGAAAATCTGATTTG 57.225 32.000 15.80 4.23 31.77 2.32
2358 2372 6.713762 ACAGTTGTGGAAAATCTGATTTGA 57.286 33.333 15.80 1.69 31.77 2.69
2359 2373 7.111247 ACAGTTGTGGAAAATCTGATTTGAA 57.889 32.000 15.80 3.02 31.77 2.69
2360 2374 7.555087 ACAGTTGTGGAAAATCTGATTTGAAA 58.445 30.769 15.80 2.69 31.77 2.69
2361 2375 8.040132 ACAGTTGTGGAAAATCTGATTTGAAAA 58.960 29.630 15.80 3.21 31.77 2.29
2362 2376 8.881743 CAGTTGTGGAAAATCTGATTTGAAAAA 58.118 29.630 15.80 4.43 31.77 1.94
2363 2377 9.101655 AGTTGTGGAAAATCTGATTTGAAAAAG 57.898 29.630 15.80 0.00 31.77 2.27
2364 2378 9.097257 GTTGTGGAAAATCTGATTTGAAAAAGA 57.903 29.630 15.80 0.00 31.77 2.52
2365 2379 9.835389 TTGTGGAAAATCTGATTTGAAAAAGAT 57.165 25.926 15.80 0.00 31.77 2.40
2366 2380 9.263538 TGTGGAAAATCTGATTTGAAAAAGATG 57.736 29.630 15.80 0.00 31.77 2.90
2367 2381 9.264719 GTGGAAAATCTGATTTGAAAAAGATGT 57.735 29.630 15.80 0.00 31.77 3.06
2373 2387 8.868522 ATCTGATTTGAAAAAGATGTAGGTCA 57.131 30.769 5.89 0.00 0.00 4.02
2374 2388 8.868522 TCTGATTTGAAAAAGATGTAGGTCAT 57.131 30.769 0.00 0.00 39.77 3.06
2375 2389 9.300681 TCTGATTTGAAAAAGATGTAGGTCATT 57.699 29.630 0.00 0.00 36.83 2.57
2376 2390 9.918630 CTGATTTGAAAAAGATGTAGGTCATTT 57.081 29.630 0.00 0.00 36.83 2.32
2377 2391 9.695526 TGATTTGAAAAAGATGTAGGTCATTTG 57.304 29.630 0.00 0.00 36.83 2.32
2378 2392 9.143631 GATTTGAAAAAGATGTAGGTCATTTGG 57.856 33.333 0.00 0.00 36.83 3.28
2379 2393 6.024552 TGAAAAAGATGTAGGTCATTTGGC 57.975 37.500 0.00 0.00 36.83 4.52
2380 2394 5.538053 TGAAAAAGATGTAGGTCATTTGGCA 59.462 36.000 0.00 0.00 36.83 4.92
2381 2395 6.041409 TGAAAAAGATGTAGGTCATTTGGCAA 59.959 34.615 0.00 0.00 36.83 4.52
2382 2396 6.418057 AAAAGATGTAGGTCATTTGGCAAA 57.582 33.333 16.01 16.01 36.83 3.68
2383 2397 5.391312 AAGATGTAGGTCATTTGGCAAAC 57.609 39.130 16.00 3.12 36.83 2.93
2384 2398 3.763897 AGATGTAGGTCATTTGGCAAACC 59.236 43.478 16.00 13.12 36.83 3.27
2385 2399 3.509575 GATGTAGGTCATTTGGCAAACCA 59.490 43.478 16.00 1.33 39.74 3.67
2386 2400 4.380867 GATGTAGGTCATTTGGCAAACCAG 60.381 45.833 16.00 8.58 41.40 4.00
2387 2401 7.845340 GATGTAGGTCATTTGGCAAACCAGC 62.845 48.000 16.00 13.65 41.40 4.85
2397 2411 2.823154 TGGCAAACCAGCTAATACAACC 59.177 45.455 0.00 0.00 42.67 3.77
2398 2412 3.089284 GGCAAACCAGCTAATACAACCT 58.911 45.455 0.00 0.00 35.26 3.50
2399 2413 3.509967 GGCAAACCAGCTAATACAACCTT 59.490 43.478 0.00 0.00 35.26 3.50
2400 2414 4.021456 GGCAAACCAGCTAATACAACCTTT 60.021 41.667 0.00 0.00 35.26 3.11
2401 2415 5.510690 GGCAAACCAGCTAATACAACCTTTT 60.511 40.000 0.00 0.00 35.26 2.27
2402 2416 5.633601 GCAAACCAGCTAATACAACCTTTTC 59.366 40.000 0.00 0.00 0.00 2.29
2403 2417 6.737346 GCAAACCAGCTAATACAACCTTTTCA 60.737 38.462 0.00 0.00 0.00 2.69
2404 2418 6.575162 AACCAGCTAATACAACCTTTTCAG 57.425 37.500 0.00 0.00 0.00 3.02
2405 2419 5.876357 ACCAGCTAATACAACCTTTTCAGA 58.124 37.500 0.00 0.00 0.00 3.27
2406 2420 6.485171 ACCAGCTAATACAACCTTTTCAGAT 58.515 36.000 0.00 0.00 0.00 2.90
2407 2421 6.948309 ACCAGCTAATACAACCTTTTCAGATT 59.052 34.615 0.00 0.00 0.00 2.40
2408 2422 7.451566 ACCAGCTAATACAACCTTTTCAGATTT 59.548 33.333 0.00 0.00 0.00 2.17
2409 2423 8.306761 CCAGCTAATACAACCTTTTCAGATTTT 58.693 33.333 0.00 0.00 0.00 1.82
2410 2424 9.132521 CAGCTAATACAACCTTTTCAGATTTTG 57.867 33.333 0.00 0.00 0.00 2.44
2411 2425 8.306761 AGCTAATACAACCTTTTCAGATTTTGG 58.693 33.333 0.00 0.00 0.00 3.28
2412 2426 7.063426 GCTAATACAACCTTTTCAGATTTTGGC 59.937 37.037 0.00 0.00 0.00 4.52
2413 2427 4.071961 ACAACCTTTTCAGATTTTGGCC 57.928 40.909 0.00 0.00 0.00 5.36
2414 2428 3.181455 ACAACCTTTTCAGATTTTGGCCC 60.181 43.478 0.00 0.00 0.00 5.80
2415 2429 1.618343 ACCTTTTCAGATTTTGGCCCG 59.382 47.619 0.00 0.00 0.00 6.13
2416 2430 1.672737 CCTTTTCAGATTTTGGCCCGC 60.673 52.381 0.00 0.00 0.00 6.13
2417 2431 1.000731 CTTTTCAGATTTTGGCCCGCA 59.999 47.619 0.00 0.00 0.00 5.69
2418 2432 0.602562 TTTCAGATTTTGGCCCGCAG 59.397 50.000 0.00 0.00 0.00 5.18
2419 2433 1.876497 TTCAGATTTTGGCCCGCAGC 61.876 55.000 0.00 0.00 42.60 5.25
2420 2434 2.283101 AGATTTTGGCCCGCAGCA 60.283 55.556 0.00 0.00 46.50 4.41
2421 2435 2.182537 GATTTTGGCCCGCAGCAG 59.817 61.111 0.00 0.00 46.50 4.24
2422 2436 2.283101 ATTTTGGCCCGCAGCAGA 60.283 55.556 0.00 0.00 46.50 4.26
2423 2437 1.876497 GATTTTGGCCCGCAGCAGAA 61.876 55.000 0.00 0.00 46.50 3.02
2424 2438 1.259840 ATTTTGGCCCGCAGCAGAAT 61.260 50.000 0.00 0.00 46.50 2.40
2425 2439 1.876497 TTTTGGCCCGCAGCAGAATC 61.876 55.000 0.00 0.00 46.50 2.52
2426 2440 3.565961 TTGGCCCGCAGCAGAATCA 62.566 57.895 0.00 0.00 46.50 2.57
2427 2441 3.207669 GGCCCGCAGCAGAATCAG 61.208 66.667 0.00 0.00 46.50 2.90
2428 2442 2.124983 GCCCGCAGCAGAATCAGA 60.125 61.111 0.00 0.00 42.97 3.27
2429 2443 1.525535 GCCCGCAGCAGAATCAGAT 60.526 57.895 0.00 0.00 42.97 2.90
2430 2444 1.099879 GCCCGCAGCAGAATCAGATT 61.100 55.000 0.00 0.00 42.97 2.40
2431 2445 1.386533 CCCGCAGCAGAATCAGATTT 58.613 50.000 0.00 0.00 0.00 2.17
2432 2446 1.747355 CCCGCAGCAGAATCAGATTTT 59.253 47.619 0.00 0.00 0.00 1.82
2433 2447 2.479049 CCCGCAGCAGAATCAGATTTTG 60.479 50.000 8.97 8.97 0.00 2.44
2434 2448 2.479049 CCGCAGCAGAATCAGATTTTGG 60.479 50.000 14.05 1.80 0.00 3.28
2435 2449 2.421073 CGCAGCAGAATCAGATTTTGGA 59.579 45.455 14.05 0.00 0.00 3.53
2436 2450 3.119743 CGCAGCAGAATCAGATTTTGGAA 60.120 43.478 14.05 0.00 0.00 3.53
2437 2451 4.616604 CGCAGCAGAATCAGATTTTGGAAA 60.617 41.667 14.05 0.00 0.00 3.13
2438 2452 4.863131 GCAGCAGAATCAGATTTTGGAAAG 59.137 41.667 14.05 0.00 0.00 2.62
2439 2453 4.863131 CAGCAGAATCAGATTTTGGAAAGC 59.137 41.667 14.05 1.36 0.00 3.51
2440 2454 4.525487 AGCAGAATCAGATTTTGGAAAGCA 59.475 37.500 14.05 0.00 0.00 3.91
2441 2455 4.624452 GCAGAATCAGATTTTGGAAAGCAC 59.376 41.667 14.05 0.00 0.00 4.40
2442 2456 4.855388 CAGAATCAGATTTTGGAAAGCACG 59.145 41.667 5.87 0.00 0.00 5.34
2443 2457 4.520492 AGAATCAGATTTTGGAAAGCACGT 59.480 37.500 0.00 0.00 0.00 4.49
2444 2458 3.896648 TCAGATTTTGGAAAGCACGTC 57.103 42.857 0.00 0.00 0.00 4.34
2445 2459 2.552315 TCAGATTTTGGAAAGCACGTCC 59.448 45.455 0.00 0.00 35.55 4.79
2446 2460 2.554032 CAGATTTTGGAAAGCACGTCCT 59.446 45.455 0.00 0.00 36.03 3.85
2447 2461 2.554032 AGATTTTGGAAAGCACGTCCTG 59.446 45.455 0.00 0.00 36.03 3.86
2448 2462 1.028905 TTTTGGAAAGCACGTCCTGG 58.971 50.000 0.00 0.00 36.03 4.45
2449 2463 0.821711 TTTGGAAAGCACGTCCTGGG 60.822 55.000 0.00 0.00 36.03 4.45
2450 2464 3.056328 GGAAAGCACGTCCTGGGC 61.056 66.667 0.00 0.00 31.94 5.36
2451 2465 2.032681 GAAAGCACGTCCTGGGCT 59.967 61.111 0.00 0.00 40.14 5.19
2452 2466 2.281761 AAAGCACGTCCTGGGCTG 60.282 61.111 0.00 0.00 38.04 4.85
2456 2470 2.743928 CACGTCCTGGGCTGCTTC 60.744 66.667 0.00 0.00 0.00 3.86
2457 2471 4.021925 ACGTCCTGGGCTGCTTCC 62.022 66.667 0.00 0.00 0.00 3.46
2459 2473 4.021925 GTCCTGGGCTGCTTCCGT 62.022 66.667 0.00 0.00 0.00 4.69
2460 2474 3.249189 TCCTGGGCTGCTTCCGTT 61.249 61.111 0.00 0.00 0.00 4.44
2461 2475 2.282462 CCTGGGCTGCTTCCGTTT 60.282 61.111 0.00 0.00 0.00 3.60
2462 2476 1.903404 CCTGGGCTGCTTCCGTTTT 60.903 57.895 0.00 0.00 0.00 2.43
2463 2477 1.463553 CCTGGGCTGCTTCCGTTTTT 61.464 55.000 0.00 0.00 0.00 1.94
2464 2478 0.318955 CTGGGCTGCTTCCGTTTTTG 60.319 55.000 0.00 0.00 0.00 2.44
2465 2479 1.006220 GGGCTGCTTCCGTTTTTGG 60.006 57.895 0.00 0.00 0.00 3.28
2466 2480 1.739667 GGCTGCTTCCGTTTTTGGT 59.260 52.632 0.00 0.00 0.00 3.67
2467 2481 0.104120 GGCTGCTTCCGTTTTTGGTT 59.896 50.000 0.00 0.00 0.00 3.67
2468 2482 1.487482 GCTGCTTCCGTTTTTGGTTC 58.513 50.000 0.00 0.00 0.00 3.62
2469 2483 1.202359 GCTGCTTCCGTTTTTGGTTCA 60.202 47.619 0.00 0.00 0.00 3.18
2470 2484 2.731217 CTGCTTCCGTTTTTGGTTCAG 58.269 47.619 0.00 0.00 0.00 3.02
2471 2485 2.357637 CTGCTTCCGTTTTTGGTTCAGA 59.642 45.455 0.00 0.00 0.00 3.27
2472 2486 2.955660 TGCTTCCGTTTTTGGTTCAGAT 59.044 40.909 0.00 0.00 0.00 2.90
2473 2487 3.383185 TGCTTCCGTTTTTGGTTCAGATT 59.617 39.130 0.00 0.00 0.00 2.40
2474 2488 4.142049 TGCTTCCGTTTTTGGTTCAGATTT 60.142 37.500 0.00 0.00 0.00 2.17
2475 2489 4.808895 GCTTCCGTTTTTGGTTCAGATTTT 59.191 37.500 0.00 0.00 0.00 1.82
2476 2490 5.276820 GCTTCCGTTTTTGGTTCAGATTTTG 60.277 40.000 0.00 0.00 0.00 2.44
2477 2491 4.688021 TCCGTTTTTGGTTCAGATTTTGG 58.312 39.130 0.00 0.00 0.00 3.28
2478 2492 3.247411 CCGTTTTTGGTTCAGATTTTGGC 59.753 43.478 0.00 0.00 0.00 4.52
2479 2493 3.868077 CGTTTTTGGTTCAGATTTTGGCA 59.132 39.130 0.00 0.00 0.00 4.92
2480 2494 4.025813 CGTTTTTGGTTCAGATTTTGGCAG 60.026 41.667 0.00 0.00 0.00 4.85
2481 2495 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
2482 2496 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
2483 2497 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
2484 2498 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
2485 2499 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
2486 2500 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
2487 2501 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
2488 2502 2.164219 TCAGATTTTGGCAGCGGATTTC 59.836 45.455 0.00 0.00 0.00 2.17
2489 2503 2.165030 CAGATTTTGGCAGCGGATTTCT 59.835 45.455 0.00 0.00 0.00 2.52
2490 2504 2.165030 AGATTTTGGCAGCGGATTTCTG 59.835 45.455 0.00 0.00 34.79 3.02
2491 2505 0.602562 TTTTGGCAGCGGATTTCTGG 59.397 50.000 0.00 0.00 32.41 3.86
2492 2506 0.251121 TTTGGCAGCGGATTTCTGGA 60.251 50.000 0.00 0.00 32.41 3.86
2493 2507 0.251121 TTGGCAGCGGATTTCTGGAA 60.251 50.000 0.00 0.00 32.41 3.53
2494 2508 0.034186 TGGCAGCGGATTTCTGGAAT 60.034 50.000 0.00 0.00 32.41 3.01
2495 2509 0.665298 GGCAGCGGATTTCTGGAATC 59.335 55.000 0.00 0.00 42.84 2.52
2496 2510 0.305922 GCAGCGGATTTCTGGAATCG 59.694 55.000 2.68 0.40 44.21 3.34
2497 2511 0.940126 CAGCGGATTTCTGGAATCGG 59.060 55.000 10.90 10.90 44.21 4.18
2498 2512 0.830648 AGCGGATTTCTGGAATCGGA 59.169 50.000 17.58 0.00 44.21 4.55
2499 2513 1.417890 AGCGGATTTCTGGAATCGGAT 59.582 47.619 17.58 10.19 44.21 4.18
2500 2514 2.158755 AGCGGATTTCTGGAATCGGATT 60.159 45.455 17.58 2.19 44.21 3.01
2501 2515 2.224314 GCGGATTTCTGGAATCGGATTC 59.776 50.000 20.01 20.01 44.21 2.52
2502 2516 3.733337 CGGATTTCTGGAATCGGATTCT 58.267 45.455 25.29 8.76 44.21 2.40
2503 2517 3.496130 CGGATTTCTGGAATCGGATTCTG 59.504 47.826 25.29 19.01 44.21 3.02
2504 2518 3.251972 GGATTTCTGGAATCGGATTCTGC 59.748 47.826 25.29 13.44 44.21 4.26
2505 2519 3.634397 TTTCTGGAATCGGATTCTGCT 57.366 42.857 25.29 0.00 39.24 4.24
2506 2520 2.609427 TCTGGAATCGGATTCTGCTG 57.391 50.000 25.29 15.51 39.24 4.41
2507 2521 1.139654 TCTGGAATCGGATTCTGCTGG 59.860 52.381 25.29 13.47 39.24 4.85
2508 2522 0.181114 TGGAATCGGATTCTGCTGGG 59.819 55.000 25.29 0.00 39.24 4.45
2509 2523 0.181350 GGAATCGGATTCTGCTGGGT 59.819 55.000 25.29 0.00 39.24 4.51
2510 2524 1.408822 GGAATCGGATTCTGCTGGGTT 60.409 52.381 25.29 0.00 39.24 4.11
2511 2525 1.943340 GAATCGGATTCTGCTGGGTTC 59.057 52.381 20.70 0.00 36.37 3.62
2512 2526 0.179073 ATCGGATTCTGCTGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
2513 2527 2.464459 CGGATTCTGCTGGGTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
2514 2528 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
2524 2538 4.167597 GGTTCGCCCTTTGGTTCA 57.832 55.556 0.00 0.00 0.00 3.18
2525 2539 1.956802 GGTTCGCCCTTTGGTTCAG 59.043 57.895 0.00 0.00 0.00 3.02
2526 2540 0.536460 GGTTCGCCCTTTGGTTCAGA 60.536 55.000 0.00 0.00 0.00 3.27
2527 2541 1.534729 GTTCGCCCTTTGGTTCAGAT 58.465 50.000 0.00 0.00 0.00 2.90
2528 2542 1.886542 GTTCGCCCTTTGGTTCAGATT 59.113 47.619 0.00 0.00 0.00 2.40
2529 2543 1.821216 TCGCCCTTTGGTTCAGATTC 58.179 50.000 0.00 0.00 0.00 2.52
2530 2544 1.351017 TCGCCCTTTGGTTCAGATTCT 59.649 47.619 0.00 0.00 0.00 2.40
2531 2545 1.470098 CGCCCTTTGGTTCAGATTCTG 59.530 52.381 7.38 7.38 0.00 3.02
2532 2546 1.203287 GCCCTTTGGTTCAGATTCTGC 59.797 52.381 8.89 0.00 0.00 4.26
2533 2547 2.800250 CCCTTTGGTTCAGATTCTGCT 58.200 47.619 8.89 0.00 0.00 4.24
2534 2548 2.490903 CCCTTTGGTTCAGATTCTGCTG 59.509 50.000 8.89 0.00 37.24 4.41
2535 2549 2.094854 CCTTTGGTTCAGATTCTGCTGC 60.095 50.000 8.89 0.00 35.86 5.25
2536 2550 1.159285 TTGGTTCAGATTCTGCTGCG 58.841 50.000 8.89 0.00 35.86 5.18
2537 2551 1.300971 TGGTTCAGATTCTGCTGCGC 61.301 55.000 8.89 0.00 35.86 6.09
2538 2552 1.059994 GTTCAGATTCTGCTGCGCG 59.940 57.895 8.89 0.00 35.86 6.86
2539 2553 2.102438 TTCAGATTCTGCTGCGCGG 61.102 57.895 13.18 13.18 35.86 6.46
2540 2554 4.233635 CAGATTCTGCTGCGCGGC 62.234 66.667 34.00 34.00 34.49 6.53
2541 2555 4.765449 AGATTCTGCTGCGCGGCA 62.765 61.111 39.10 39.10 40.15 5.69
2562 2576 0.234884 CGGAATCCGGCGATAAAAGC 59.765 55.000 14.91 0.00 44.15 3.51
2563 2577 1.594331 GGAATCCGGCGATAAAAGCT 58.406 50.000 9.30 0.00 34.52 3.74
2564 2578 1.264288 GGAATCCGGCGATAAAAGCTG 59.736 52.381 9.30 0.00 40.49 4.24
2565 2579 2.210116 GAATCCGGCGATAAAAGCTGA 58.790 47.619 9.30 0.00 43.29 4.26
2566 2580 2.325583 ATCCGGCGATAAAAGCTGAA 57.674 45.000 9.30 0.00 43.29 3.02
2567 2581 1.365699 TCCGGCGATAAAAGCTGAAC 58.634 50.000 9.30 0.00 43.29 3.18
2568 2582 0.377203 CCGGCGATAAAAGCTGAACC 59.623 55.000 9.30 0.00 43.29 3.62
2569 2583 1.083489 CGGCGATAAAAGCTGAACCA 58.917 50.000 0.00 0.00 43.29 3.67
2570 2584 1.466950 CGGCGATAAAAGCTGAACCAA 59.533 47.619 0.00 0.00 43.29 3.67
2571 2585 2.095466 CGGCGATAAAAGCTGAACCAAA 60.095 45.455 0.00 0.00 43.29 3.28
2572 2586 3.242518 GGCGATAAAAGCTGAACCAAAC 58.757 45.455 0.00 0.00 34.52 2.93
2573 2587 3.305064 GGCGATAAAAGCTGAACCAAACA 60.305 43.478 0.00 0.00 34.52 2.83
2574 2588 3.914364 GCGATAAAAGCTGAACCAAACAG 59.086 43.478 0.00 0.00 38.27 3.16
2575 2589 4.475944 CGATAAAAGCTGAACCAAACAGG 58.524 43.478 0.00 0.00 45.67 4.00
2576 2590 4.615912 CGATAAAAGCTGAACCAAACAGGG 60.616 45.833 0.00 0.00 43.89 4.45
2577 2591 0.752658 AAAGCTGAACCAAACAGGGC 59.247 50.000 0.00 0.00 43.89 5.19
2578 2592 1.115326 AAGCTGAACCAAACAGGGCC 61.115 55.000 0.00 0.00 43.89 5.80
2579 2593 1.531602 GCTGAACCAAACAGGGCCT 60.532 57.895 0.00 0.00 43.89 5.19
2580 2594 1.527433 GCTGAACCAAACAGGGCCTC 61.527 60.000 0.95 0.00 43.89 4.70
2581 2595 0.178992 CTGAACCAAACAGGGCCTCA 60.179 55.000 0.95 0.00 43.89 3.86
2592 2606 2.665603 GGCCTCAGTGTCTCCACC 59.334 66.667 0.00 0.00 42.88 4.61
2594 2608 1.294780 GCCTCAGTGTCTCCACCAG 59.705 63.158 0.00 0.00 42.88 4.00
2600 2614 3.506398 TCAGTGTCTCCACCAGATACAA 58.494 45.455 1.95 0.00 43.99 2.41
2605 2619 5.013079 AGTGTCTCCACCAGATACAAAATCA 59.987 40.000 1.95 0.00 43.99 2.57
2659 2673 7.938140 TCAGTCCTTGGGAAAATAATAGTTG 57.062 36.000 0.00 0.00 31.38 3.16
2664 2678 6.895204 TCCTTGGGAAAATAATAGTTGAAGGG 59.105 38.462 0.00 0.00 0.00 3.95
2700 2714 5.526846 AGCTCTCAAGTTTATGCATAGAAGC 59.473 40.000 6.50 7.29 0.00 3.86
2706 2720 6.377996 TCAAGTTTATGCATAGAAGCCACATT 59.622 34.615 6.50 0.00 0.00 2.71
2717 2731 4.769688 AGAAGCCACATTTCGATGTATCA 58.230 39.130 0.00 0.00 32.74 2.15
2728 2742 9.289303 ACATTTCGATGTATCAGTAAATTTTGC 57.711 29.630 0.00 0.00 32.14 3.68
2729 2743 9.288124 CATTTCGATGTATCAGTAAATTTTGCA 57.712 29.630 0.00 0.00 0.00 4.08
2733 2747 8.337532 TCGATGTATCAGTAAATTTTGCATGAG 58.662 33.333 0.00 0.00 0.00 2.90
2756 2770 4.220821 GCTAGTTGGTGCATATAGCTAGGA 59.779 45.833 15.27 0.00 45.94 2.94
2759 2773 4.058817 GTTGGTGCATATAGCTAGGACAC 58.941 47.826 0.00 5.12 45.94 3.67
2793 2807 6.396829 AGCTTAGCAGTTCATTTTGAGTTT 57.603 33.333 7.07 0.00 0.00 2.66
2802 2816 7.860373 GCAGTTCATTTTGAGTTTACATGTGTA 59.140 33.333 9.11 0.00 0.00 2.90
2875 2889 7.890515 TGGTCATCTCTAATGTGATATCTGAC 58.109 38.462 3.98 5.26 0.00 3.51
2956 2970 4.642437 TGTTTGGTGTTCTCATGCACTTTA 59.358 37.500 0.00 0.00 36.03 1.85
2960 2974 5.771469 TGGTGTTCTCATGCACTTTATTTG 58.229 37.500 0.00 0.00 36.03 2.32
2974 2988 5.403166 CACTTTATTTGTTGATGCAGGTGTG 59.597 40.000 0.00 0.00 0.00 3.82
2993 3007 5.105797 GGTGTGACATGGCAAGATTTTATGA 60.106 40.000 0.58 0.00 0.00 2.15
3080 3094 9.916397 GACATATTAAGAACCAGTAAATTGTCG 57.084 33.333 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.743521 CCTGATCGATCCAAATTAGCCA 58.256 45.455 22.31 0.00 0.00 4.75
48 49 9.856488 GAACTGTCAGATACTATTGAACTACAA 57.144 33.333 6.91 0.00 42.95 2.41
68 71 3.589288 AGAATTTGGGCTAGAGGAACTGT 59.411 43.478 0.00 0.00 41.55 3.55
70 73 5.726793 TTCTAGAATTTGGGCTAGAGGAACT 59.273 40.000 0.00 0.00 42.71 3.01
96 99 3.430790 GCAAGACCAATTAAATCCTGCCC 60.431 47.826 0.00 0.00 0.00 5.36
98 101 4.725790 AGCAAGACCAATTAAATCCTGC 57.274 40.909 0.00 0.00 0.00 4.85
174 179 5.251764 ACTCAAGTAATCAGCAAGCAATCT 58.748 37.500 0.00 0.00 0.00 2.40
258 272 5.120399 CCGGTGTGGCTTTATTAATCTACA 58.880 41.667 0.00 0.00 0.00 2.74
259 273 5.668558 CCGGTGTGGCTTTATTAATCTAC 57.331 43.478 0.00 0.00 0.00 2.59
285 299 1.628340 AGTGTGTAGGGCTGTTATGCA 59.372 47.619 0.00 0.00 34.04 3.96
331 345 3.062234 GCCTGTAGCAATCGTAAACTGAC 59.938 47.826 0.00 0.00 42.97 3.51
345 359 0.609131 TTCTGCTTTGGGCCTGTAGC 60.609 55.000 4.53 11.44 40.92 3.58
424 438 2.158726 AGTTCACGTGGGGTTGTGTTAT 60.159 45.455 17.00 0.00 37.38 1.89
609 623 8.747471 TGATGTCATAAACAATTTTAGCATGGA 58.253 29.630 0.00 0.00 42.37 3.41
620 634 8.863049 GCGAATTTTCTTGATGTCATAAACAAT 58.137 29.630 0.00 0.00 42.37 2.71
652 666 9.335891 CATCAATTACGCAAACAAACTACATAA 57.664 29.630 0.00 0.00 0.00 1.90
668 682 0.920664 TGTCGCGCTCATCAATTACG 59.079 50.000 5.56 0.00 0.00 3.18
730 744 7.505585 TCTCAAAACCAGAAAATCCTGTACAAT 59.494 33.333 0.00 0.00 32.43 2.71
748 762 1.349357 ACTCCTGGGAGCTCTCAAAAC 59.651 52.381 18.91 0.00 45.54 2.43
1076 1090 5.807011 GCAATTCGGATAAATTTGTCTGCTT 59.193 36.000 16.63 10.72 0.00 3.91
1272 1286 5.892119 ACGGATAACTCTAACATTCTCCTCA 59.108 40.000 0.00 0.00 0.00 3.86
1401 1415 1.882623 GGAGCTTTGTTCTTGTCAGGG 59.117 52.381 0.00 0.00 0.00 4.45
1416 1430 3.344511 ATCCTCTGCCCCAGGAGCT 62.345 63.158 0.00 0.00 43.56 4.09
1431 1445 2.287668 GCTGAGCATCTTGAATGCATCC 60.288 50.000 12.12 0.00 46.77 3.51
1671 1685 2.859165 AGACATTGTGACCACGGAAT 57.141 45.000 0.00 0.00 0.00 3.01
1866 1880 6.588719 TTATCAGTGACTTTTGAAATGGGG 57.411 37.500 0.00 0.00 0.00 4.96
2209 2223 8.764287 CACTTAAATCAGAATATACACGATGCA 58.236 33.333 0.00 0.00 0.00 3.96
2274 2288 2.597510 GCCGAACCAAACAGGGCT 60.598 61.111 0.00 0.00 43.89 5.19
2275 2289 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
2276 2290 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
2277 2291 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
2278 2292 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
2279 2293 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
2280 2294 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
2281 2295 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
2282 2296 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
2283 2297 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
2284 2298 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
2285 2299 4.723248 CTTTTAGAAATCCACAGCCGAAC 58.277 43.478 0.00 0.00 0.00 3.95
2286 2300 3.190535 GCTTTTAGAAATCCACAGCCGAA 59.809 43.478 0.00 0.00 0.00 4.30
2287 2301 2.747446 GCTTTTAGAAATCCACAGCCGA 59.253 45.455 0.00 0.00 0.00 5.54
2288 2302 2.487762 TGCTTTTAGAAATCCACAGCCG 59.512 45.455 0.00 0.00 0.00 5.52
2289 2303 3.674410 GCTGCTTTTAGAAATCCACAGCC 60.674 47.826 0.00 0.00 42.58 4.85
2290 2304 3.505836 GCTGCTTTTAGAAATCCACAGC 58.494 45.455 0.00 0.00 42.00 4.40
2291 2305 6.317140 TCATAGCTGCTTTTAGAAATCCACAG 59.683 38.462 7.79 0.00 0.00 3.66
2292 2306 6.179756 TCATAGCTGCTTTTAGAAATCCACA 58.820 36.000 7.79 0.00 0.00 4.17
2293 2307 6.683974 TCATAGCTGCTTTTAGAAATCCAC 57.316 37.500 7.79 0.00 0.00 4.02
2294 2308 7.701539 TTTCATAGCTGCTTTTAGAAATCCA 57.298 32.000 7.79 0.00 0.00 3.41
2295 2309 8.986477 TTTTTCATAGCTGCTTTTAGAAATCC 57.014 30.769 7.79 0.00 0.00 3.01
2298 2312 9.630098 CAGATTTTTCATAGCTGCTTTTAGAAA 57.370 29.630 7.79 10.42 0.00 2.52
2299 2313 7.756722 GCAGATTTTTCATAGCTGCTTTTAGAA 59.243 33.333 7.79 4.65 46.17 2.10
2300 2314 7.253422 GCAGATTTTTCATAGCTGCTTTTAGA 58.747 34.615 7.79 0.00 46.17 2.10
2301 2315 7.447243 GCAGATTTTTCATAGCTGCTTTTAG 57.553 36.000 7.79 0.00 46.17 1.85
2309 2323 6.579666 TTTCACAGCAGATTTTTCATAGCT 57.420 33.333 0.00 0.00 0.00 3.32
2310 2324 7.642071 TTTTTCACAGCAGATTTTTCATAGC 57.358 32.000 0.00 0.00 0.00 2.97
2331 2345 8.667463 CAAATCAGATTTTCCACAACTGTTTTT 58.333 29.630 5.58 0.00 32.16 1.94
2332 2346 8.040132 TCAAATCAGATTTTCCACAACTGTTTT 58.960 29.630 5.58 0.00 33.64 2.43
2333 2347 7.555087 TCAAATCAGATTTTCCACAACTGTTT 58.445 30.769 5.58 0.00 0.00 2.83
2334 2348 7.111247 TCAAATCAGATTTTCCACAACTGTT 57.889 32.000 5.58 0.00 0.00 3.16
2335 2349 6.713762 TCAAATCAGATTTTCCACAACTGT 57.286 33.333 5.58 0.00 0.00 3.55
2336 2350 8.422973 TTTTCAAATCAGATTTTCCACAACTG 57.577 30.769 5.58 0.00 0.00 3.16
2337 2351 9.101655 CTTTTTCAAATCAGATTTTCCACAACT 57.898 29.630 5.58 0.00 0.00 3.16
2338 2352 9.097257 TCTTTTTCAAATCAGATTTTCCACAAC 57.903 29.630 5.58 0.00 0.00 3.32
2339 2353 9.835389 ATCTTTTTCAAATCAGATTTTCCACAA 57.165 25.926 5.58 0.00 0.00 3.33
2340 2354 9.263538 CATCTTTTTCAAATCAGATTTTCCACA 57.736 29.630 5.58 0.00 0.00 4.17
2341 2355 9.264719 ACATCTTTTTCAAATCAGATTTTCCAC 57.735 29.630 5.58 0.00 0.00 4.02
2347 2361 9.300681 TGACCTACATCTTTTTCAAATCAGATT 57.699 29.630 0.00 0.00 0.00 2.40
2348 2362 8.868522 TGACCTACATCTTTTTCAAATCAGAT 57.131 30.769 0.00 0.00 0.00 2.90
2349 2363 8.868522 ATGACCTACATCTTTTTCAAATCAGA 57.131 30.769 0.00 0.00 33.46 3.27
2350 2364 9.918630 AAATGACCTACATCTTTTTCAAATCAG 57.081 29.630 0.00 0.00 38.38 2.90
2351 2365 9.695526 CAAATGACCTACATCTTTTTCAAATCA 57.304 29.630 0.00 0.00 38.38 2.57
2352 2366 9.143631 CCAAATGACCTACATCTTTTTCAAATC 57.856 33.333 0.00 0.00 38.38 2.17
2353 2367 7.603784 GCCAAATGACCTACATCTTTTTCAAAT 59.396 33.333 0.00 0.00 38.38 2.32
2354 2368 6.928492 GCCAAATGACCTACATCTTTTTCAAA 59.072 34.615 0.00 0.00 38.38 2.69
2355 2369 6.041409 TGCCAAATGACCTACATCTTTTTCAA 59.959 34.615 0.00 0.00 38.38 2.69
2356 2370 5.538053 TGCCAAATGACCTACATCTTTTTCA 59.462 36.000 0.00 0.00 38.38 2.69
2357 2371 6.024552 TGCCAAATGACCTACATCTTTTTC 57.975 37.500 0.00 0.00 38.38 2.29
2358 2372 6.418057 TTGCCAAATGACCTACATCTTTTT 57.582 33.333 0.00 0.00 38.38 1.94
2359 2373 6.223120 GTTTGCCAAATGACCTACATCTTTT 58.777 36.000 0.00 0.00 38.38 2.27
2360 2374 5.279456 GGTTTGCCAAATGACCTACATCTTT 60.279 40.000 0.00 0.00 34.76 2.52
2361 2375 4.220602 GGTTTGCCAAATGACCTACATCTT 59.779 41.667 0.00 0.00 34.76 2.40
2362 2376 3.763897 GGTTTGCCAAATGACCTACATCT 59.236 43.478 0.00 0.00 34.76 2.90
2363 2377 3.509575 TGGTTTGCCAAATGACCTACATC 59.490 43.478 0.00 0.00 42.83 3.06
2364 2378 3.505386 TGGTTTGCCAAATGACCTACAT 58.495 40.909 0.00 0.00 42.83 2.29
2365 2379 2.890311 CTGGTTTGCCAAATGACCTACA 59.110 45.455 0.00 0.00 45.51 2.74
2366 2380 2.352715 GCTGGTTTGCCAAATGACCTAC 60.353 50.000 0.00 0.00 45.51 3.18
2367 2381 1.892474 GCTGGTTTGCCAAATGACCTA 59.108 47.619 0.00 0.00 45.51 3.08
2368 2382 0.681175 GCTGGTTTGCCAAATGACCT 59.319 50.000 0.00 0.00 45.51 3.85
2369 2383 0.681175 AGCTGGTTTGCCAAATGACC 59.319 50.000 0.00 0.00 45.51 4.02
2370 2384 3.658757 TTAGCTGGTTTGCCAAATGAC 57.341 42.857 0.00 0.00 45.51 3.06
2371 2385 4.769488 TGTATTAGCTGGTTTGCCAAATGA 59.231 37.500 0.00 0.00 45.51 2.57
2372 2386 5.070770 TGTATTAGCTGGTTTGCCAAATG 57.929 39.130 0.00 0.00 45.51 2.32
2373 2387 5.478407 GTTGTATTAGCTGGTTTGCCAAAT 58.522 37.500 0.00 0.00 45.51 2.32
2374 2388 4.262249 GGTTGTATTAGCTGGTTTGCCAAA 60.262 41.667 0.00 0.00 45.51 3.28
2375 2389 3.257127 GGTTGTATTAGCTGGTTTGCCAA 59.743 43.478 0.00 0.00 45.51 4.52
2376 2390 2.823154 GGTTGTATTAGCTGGTTTGCCA 59.177 45.455 0.00 0.00 43.73 4.92
2377 2391 3.089284 AGGTTGTATTAGCTGGTTTGCC 58.911 45.455 0.00 0.00 0.00 4.52
2378 2392 4.783764 AAGGTTGTATTAGCTGGTTTGC 57.216 40.909 0.00 0.00 0.00 3.68
2379 2393 6.744112 TGAAAAGGTTGTATTAGCTGGTTTG 58.256 36.000 0.00 0.00 0.00 2.93
2380 2394 6.775629 TCTGAAAAGGTTGTATTAGCTGGTTT 59.224 34.615 0.00 0.00 0.00 3.27
2381 2395 6.303839 TCTGAAAAGGTTGTATTAGCTGGTT 58.696 36.000 0.00 0.00 0.00 3.67
2382 2396 5.876357 TCTGAAAAGGTTGTATTAGCTGGT 58.124 37.500 0.00 0.00 0.00 4.00
2383 2397 7.396540 AATCTGAAAAGGTTGTATTAGCTGG 57.603 36.000 0.00 0.00 0.00 4.85
2384 2398 9.132521 CAAAATCTGAAAAGGTTGTATTAGCTG 57.867 33.333 0.00 0.00 0.00 4.24
2385 2399 8.306761 CCAAAATCTGAAAAGGTTGTATTAGCT 58.693 33.333 0.00 0.00 0.00 3.32
2386 2400 7.063426 GCCAAAATCTGAAAAGGTTGTATTAGC 59.937 37.037 0.00 0.00 0.00 3.09
2387 2401 7.545615 GGCCAAAATCTGAAAAGGTTGTATTAG 59.454 37.037 0.00 0.00 0.00 1.73
2388 2402 7.382898 GGCCAAAATCTGAAAAGGTTGTATTA 58.617 34.615 0.00 0.00 0.00 0.98
2389 2403 6.230472 GGCCAAAATCTGAAAAGGTTGTATT 58.770 36.000 0.00 0.00 0.00 1.89
2390 2404 5.279960 GGGCCAAAATCTGAAAAGGTTGTAT 60.280 40.000 4.39 0.00 0.00 2.29
2391 2405 4.039852 GGGCCAAAATCTGAAAAGGTTGTA 59.960 41.667 4.39 0.00 0.00 2.41
2392 2406 3.181455 GGGCCAAAATCTGAAAAGGTTGT 60.181 43.478 4.39 0.00 0.00 3.32
2393 2407 3.402110 GGGCCAAAATCTGAAAAGGTTG 58.598 45.455 4.39 0.00 0.00 3.77
2394 2408 2.037121 CGGGCCAAAATCTGAAAAGGTT 59.963 45.455 4.39 0.00 0.00 3.50
2395 2409 1.618343 CGGGCCAAAATCTGAAAAGGT 59.382 47.619 4.39 0.00 0.00 3.50
2396 2410 1.672737 GCGGGCCAAAATCTGAAAAGG 60.673 52.381 4.39 0.00 0.00 3.11
2397 2411 1.000731 TGCGGGCCAAAATCTGAAAAG 59.999 47.619 4.39 0.00 0.00 2.27
2398 2412 1.000731 CTGCGGGCCAAAATCTGAAAA 59.999 47.619 4.39 0.00 0.00 2.29
2399 2413 0.602562 CTGCGGGCCAAAATCTGAAA 59.397 50.000 4.39 0.00 0.00 2.69
2400 2414 1.876497 GCTGCGGGCCAAAATCTGAA 61.876 55.000 4.39 0.00 34.27 3.02
2401 2415 2.342650 GCTGCGGGCCAAAATCTGA 61.343 57.895 4.39 0.00 34.27 3.27
2402 2416 2.182537 GCTGCGGGCCAAAATCTG 59.817 61.111 4.39 0.00 34.27 2.90
2403 2417 2.283101 TGCTGCGGGCCAAAATCT 60.283 55.556 4.39 0.00 40.92 2.40
2404 2418 1.876497 TTCTGCTGCGGGCCAAAATC 61.876 55.000 4.39 0.00 40.92 2.17
2405 2419 1.259840 ATTCTGCTGCGGGCCAAAAT 61.260 50.000 4.39 0.00 40.92 1.82
2406 2420 1.876497 GATTCTGCTGCGGGCCAAAA 61.876 55.000 4.39 0.00 40.92 2.44
2407 2421 2.283101 ATTCTGCTGCGGGCCAAA 60.283 55.556 4.39 0.00 40.92 3.28
2408 2422 2.751436 GATTCTGCTGCGGGCCAA 60.751 61.111 4.39 0.00 40.92 4.52
2409 2423 3.982316 CTGATTCTGCTGCGGGCCA 62.982 63.158 4.39 3.71 40.92 5.36
2410 2424 2.955022 ATCTGATTCTGCTGCGGGCC 62.955 60.000 8.89 0.00 40.92 5.80
2411 2425 1.099879 AATCTGATTCTGCTGCGGGC 61.100 55.000 8.89 0.00 42.22 6.13
2412 2426 1.386533 AAATCTGATTCTGCTGCGGG 58.613 50.000 8.89 0.00 0.00 6.13
2413 2427 2.479049 CCAAAATCTGATTCTGCTGCGG 60.479 50.000 2.92 0.95 0.00 5.69
2414 2428 2.421073 TCCAAAATCTGATTCTGCTGCG 59.579 45.455 2.92 0.00 0.00 5.18
2415 2429 4.445452 TTCCAAAATCTGATTCTGCTGC 57.555 40.909 2.92 0.00 0.00 5.25
2416 2430 4.863131 GCTTTCCAAAATCTGATTCTGCTG 59.137 41.667 2.92 0.03 0.00 4.41
2417 2431 4.525487 TGCTTTCCAAAATCTGATTCTGCT 59.475 37.500 2.92 0.00 0.00 4.24
2418 2432 4.624452 GTGCTTTCCAAAATCTGATTCTGC 59.376 41.667 2.92 2.31 0.00 4.26
2419 2433 4.855388 CGTGCTTTCCAAAATCTGATTCTG 59.145 41.667 2.92 0.00 0.00 3.02
2420 2434 4.520492 ACGTGCTTTCCAAAATCTGATTCT 59.480 37.500 2.92 0.00 0.00 2.40
2421 2435 4.798574 ACGTGCTTTCCAAAATCTGATTC 58.201 39.130 2.92 0.00 0.00 2.52
2422 2436 4.321230 GGACGTGCTTTCCAAAATCTGATT 60.321 41.667 0.00 0.00 32.82 2.57
2423 2437 3.191371 GGACGTGCTTTCCAAAATCTGAT 59.809 43.478 0.00 0.00 32.82 2.90
2424 2438 2.552315 GGACGTGCTTTCCAAAATCTGA 59.448 45.455 0.00 0.00 32.82 3.27
2425 2439 2.554032 AGGACGTGCTTTCCAAAATCTG 59.446 45.455 2.68 0.00 35.33 2.90
2426 2440 2.554032 CAGGACGTGCTTTCCAAAATCT 59.446 45.455 6.93 0.00 35.33 2.40
2427 2441 2.351738 CCAGGACGTGCTTTCCAAAATC 60.352 50.000 6.93 0.00 35.33 2.17
2428 2442 1.613437 CCAGGACGTGCTTTCCAAAAT 59.387 47.619 6.93 0.00 35.33 1.82
2429 2443 1.028905 CCAGGACGTGCTTTCCAAAA 58.971 50.000 6.93 0.00 35.33 2.44
2430 2444 0.821711 CCCAGGACGTGCTTTCCAAA 60.822 55.000 6.93 0.00 35.33 3.28
2431 2445 1.228124 CCCAGGACGTGCTTTCCAA 60.228 57.895 6.93 0.00 35.33 3.53
2432 2446 2.429930 CCCAGGACGTGCTTTCCA 59.570 61.111 6.93 0.00 35.33 3.53
2433 2447 3.056328 GCCCAGGACGTGCTTTCC 61.056 66.667 6.93 0.00 0.00 3.13
2434 2448 2.032681 AGCCCAGGACGTGCTTTC 59.967 61.111 6.93 0.00 29.17 2.62
2435 2449 2.281761 CAGCCCAGGACGTGCTTT 60.282 61.111 6.93 0.00 31.77 3.51
2439 2453 2.743928 GAAGCAGCCCAGGACGTG 60.744 66.667 0.00 0.00 0.00 4.49
2440 2454 4.021925 GGAAGCAGCCCAGGACGT 62.022 66.667 0.00 0.00 0.00 4.34
2442 2456 3.553095 AACGGAAGCAGCCCAGGAC 62.553 63.158 0.00 0.00 0.00 3.85
2443 2457 2.351924 AAAACGGAAGCAGCCCAGGA 62.352 55.000 0.00 0.00 0.00 3.86
2444 2458 1.463553 AAAAACGGAAGCAGCCCAGG 61.464 55.000 0.00 0.00 0.00 4.45
2445 2459 0.318955 CAAAAACGGAAGCAGCCCAG 60.319 55.000 0.00 0.00 0.00 4.45
2446 2460 1.739049 CAAAAACGGAAGCAGCCCA 59.261 52.632 0.00 0.00 0.00 5.36
2447 2461 1.006220 CCAAAAACGGAAGCAGCCC 60.006 57.895 0.00 0.00 0.00 5.19
2448 2462 0.104120 AACCAAAAACGGAAGCAGCC 59.896 50.000 0.00 0.00 0.00 4.85
2449 2463 1.202359 TGAACCAAAAACGGAAGCAGC 60.202 47.619 0.00 0.00 0.00 5.25
2450 2464 2.357637 TCTGAACCAAAAACGGAAGCAG 59.642 45.455 0.00 0.00 0.00 4.24
2451 2465 2.370349 TCTGAACCAAAAACGGAAGCA 58.630 42.857 0.00 0.00 0.00 3.91
2452 2466 3.643159 ATCTGAACCAAAAACGGAAGC 57.357 42.857 0.00 0.00 0.00 3.86
2453 2467 5.234116 CCAAAATCTGAACCAAAAACGGAAG 59.766 40.000 0.00 0.00 0.00 3.46
2454 2468 5.112686 CCAAAATCTGAACCAAAAACGGAA 58.887 37.500 0.00 0.00 0.00 4.30
2455 2469 4.688021 CCAAAATCTGAACCAAAAACGGA 58.312 39.130 0.00 0.00 0.00 4.69
2456 2470 3.247411 GCCAAAATCTGAACCAAAAACGG 59.753 43.478 0.00 0.00 0.00 4.44
2457 2471 3.868077 TGCCAAAATCTGAACCAAAAACG 59.132 39.130 0.00 0.00 0.00 3.60
2458 2472 4.260743 GCTGCCAAAATCTGAACCAAAAAC 60.261 41.667 0.00 0.00 0.00 2.43
2459 2473 3.876320 GCTGCCAAAATCTGAACCAAAAA 59.124 39.130 0.00 0.00 0.00 1.94
2460 2474 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
2461 2475 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
2462 2476 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
2463 2477 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
2464 2478 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
2465 2479 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
2466 2480 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
2467 2481 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
2468 2482 2.165030 AGAAATCCGCTGCCAAAATCTG 59.835 45.455 0.00 0.00 0.00 2.90
2469 2483 2.165030 CAGAAATCCGCTGCCAAAATCT 59.835 45.455 0.00 0.00 0.00 2.40
2470 2484 2.533266 CAGAAATCCGCTGCCAAAATC 58.467 47.619 0.00 0.00 0.00 2.17
2471 2485 1.205417 CCAGAAATCCGCTGCCAAAAT 59.795 47.619 0.00 0.00 32.06 1.82
2472 2486 0.602562 CCAGAAATCCGCTGCCAAAA 59.397 50.000 0.00 0.00 32.06 2.44
2473 2487 0.251121 TCCAGAAATCCGCTGCCAAA 60.251 50.000 0.00 0.00 32.06 3.28
2474 2488 0.251121 TTCCAGAAATCCGCTGCCAA 60.251 50.000 0.00 0.00 32.06 4.52
2475 2489 0.034186 ATTCCAGAAATCCGCTGCCA 60.034 50.000 0.00 0.00 32.06 4.92
2476 2490 0.665298 GATTCCAGAAATCCGCTGCC 59.335 55.000 0.00 0.00 38.27 4.85
2477 2491 0.305922 CGATTCCAGAAATCCGCTGC 59.694 55.000 0.00 0.00 40.69 5.25
2478 2492 0.940126 CCGATTCCAGAAATCCGCTG 59.060 55.000 0.00 0.00 40.69 5.18
2479 2493 0.830648 TCCGATTCCAGAAATCCGCT 59.169 50.000 0.00 0.00 40.69 5.52
2480 2494 1.884235 ATCCGATTCCAGAAATCCGC 58.116 50.000 0.00 0.00 40.69 5.54
2481 2495 3.496130 CAGAATCCGATTCCAGAAATCCG 59.504 47.826 16.09 0.00 40.69 4.18
2482 2496 3.251972 GCAGAATCCGATTCCAGAAATCC 59.748 47.826 16.09 0.00 40.69 3.01
2483 2497 4.024218 CAGCAGAATCCGATTCCAGAAATC 60.024 45.833 16.09 0.79 40.13 2.17
2484 2498 3.881688 CAGCAGAATCCGATTCCAGAAAT 59.118 43.478 16.09 0.00 40.13 2.17
2485 2499 3.273434 CAGCAGAATCCGATTCCAGAAA 58.727 45.455 16.09 0.00 40.13 2.52
2486 2500 2.420547 CCAGCAGAATCCGATTCCAGAA 60.421 50.000 16.09 0.00 40.13 3.02
2487 2501 1.139654 CCAGCAGAATCCGATTCCAGA 59.860 52.381 16.09 0.00 40.13 3.86
2488 2502 1.590932 CCAGCAGAATCCGATTCCAG 58.409 55.000 16.09 11.03 40.13 3.86
2489 2503 0.181114 CCCAGCAGAATCCGATTCCA 59.819 55.000 16.09 0.00 40.13 3.53
2490 2504 0.181350 ACCCAGCAGAATCCGATTCC 59.819 55.000 16.09 3.83 40.13 3.01
2491 2505 1.943340 GAACCCAGCAGAATCCGATTC 59.057 52.381 12.51 12.51 39.56 2.52
2492 2506 1.743772 CGAACCCAGCAGAATCCGATT 60.744 52.381 0.00 0.00 0.00 3.34
2493 2507 0.179073 CGAACCCAGCAGAATCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
2494 2508 1.218047 CGAACCCAGCAGAATCCGA 59.782 57.895 0.00 0.00 0.00 4.55
2495 2509 2.464459 GCGAACCCAGCAGAATCCG 61.464 63.158 0.00 0.00 34.19 4.18
2496 2510 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
2497 2511 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
2507 2521 0.536460 TCTGAACCAAAGGGCGAACC 60.536 55.000 0.00 0.00 37.90 3.62
2508 2522 1.534729 ATCTGAACCAAAGGGCGAAC 58.465 50.000 0.00 0.00 37.90 3.95
2509 2523 2.159382 GAATCTGAACCAAAGGGCGAA 58.841 47.619 0.00 0.00 37.90 4.70
2510 2524 1.351017 AGAATCTGAACCAAAGGGCGA 59.649 47.619 0.00 0.00 37.90 5.54
2511 2525 1.470098 CAGAATCTGAACCAAAGGGCG 59.530 52.381 3.77 0.00 33.00 6.13
2512 2526 1.203287 GCAGAATCTGAACCAAAGGGC 59.797 52.381 15.38 0.00 33.00 5.19
2513 2527 2.490903 CAGCAGAATCTGAACCAAAGGG 59.509 50.000 15.38 0.00 36.19 3.95
2514 2528 2.094854 GCAGCAGAATCTGAACCAAAGG 60.095 50.000 15.38 0.00 36.19 3.11
2515 2529 2.413765 CGCAGCAGAATCTGAACCAAAG 60.414 50.000 15.38 0.00 36.19 2.77
2516 2530 1.536766 CGCAGCAGAATCTGAACCAAA 59.463 47.619 15.38 0.00 36.19 3.28
2517 2531 1.159285 CGCAGCAGAATCTGAACCAA 58.841 50.000 15.38 0.00 36.19 3.67
2518 2532 2.845019 CGCAGCAGAATCTGAACCA 58.155 52.632 15.38 0.00 36.19 3.67
2539 2553 3.858868 TATCGCCGGATTCCGCTGC 62.859 63.158 19.80 16.64 46.86 5.25
2540 2554 0.878523 TTTATCGCCGGATTCCGCTG 60.879 55.000 19.80 13.29 46.86 5.18
2541 2555 0.179067 TTTTATCGCCGGATTCCGCT 60.179 50.000 19.80 6.30 46.86 5.52
2542 2556 0.234884 CTTTTATCGCCGGATTCCGC 59.765 55.000 19.80 13.54 46.86 5.54
2544 2558 1.264288 CAGCTTTTATCGCCGGATTCC 59.736 52.381 5.05 0.00 34.00 3.01
2545 2559 2.210116 TCAGCTTTTATCGCCGGATTC 58.790 47.619 5.05 0.00 34.00 2.52
2546 2560 2.325583 TCAGCTTTTATCGCCGGATT 57.674 45.000 5.05 0.00 34.00 3.01
2547 2561 1.940613 GTTCAGCTTTTATCGCCGGAT 59.059 47.619 5.05 0.00 36.65 4.18
2548 2562 1.365699 GTTCAGCTTTTATCGCCGGA 58.634 50.000 5.05 0.00 0.00 5.14
2549 2563 0.377203 GGTTCAGCTTTTATCGCCGG 59.623 55.000 0.00 0.00 0.00 6.13
2550 2564 1.083489 TGGTTCAGCTTTTATCGCCG 58.917 50.000 0.00 0.00 0.00 6.46
2551 2565 3.242518 GTTTGGTTCAGCTTTTATCGCC 58.757 45.455 0.00 0.00 0.00 5.54
2552 2566 3.896122 TGTTTGGTTCAGCTTTTATCGC 58.104 40.909 0.00 0.00 0.00 4.58
2553 2567 4.475944 CCTGTTTGGTTCAGCTTTTATCG 58.524 43.478 0.00 0.00 0.00 2.92
2554 2568 4.809673 CCCTGTTTGGTTCAGCTTTTATC 58.190 43.478 0.00 0.00 0.00 1.75
2555 2569 3.006859 GCCCTGTTTGGTTCAGCTTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
2556 2570 2.364002 GCCCTGTTTGGTTCAGCTTTTA 59.636 45.455 0.00 0.00 0.00 1.52
2557 2571 1.138859 GCCCTGTTTGGTTCAGCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
2558 2572 0.752658 GCCCTGTTTGGTTCAGCTTT 59.247 50.000 0.00 0.00 0.00 3.51
2559 2573 1.115326 GGCCCTGTTTGGTTCAGCTT 61.115 55.000 0.00 0.00 0.00 3.74
2560 2574 1.531602 GGCCCTGTTTGGTTCAGCT 60.532 57.895 0.00 0.00 0.00 4.24
2561 2575 1.527433 GAGGCCCTGTTTGGTTCAGC 61.527 60.000 0.00 0.00 0.00 4.26
2562 2576 0.178992 TGAGGCCCTGTTTGGTTCAG 60.179 55.000 0.00 0.00 0.00 3.02
2563 2577 0.178992 CTGAGGCCCTGTTTGGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
2564 2578 0.178990 ACTGAGGCCCTGTTTGGTTC 60.179 55.000 0.00 0.00 0.00 3.62
2565 2579 0.468029 CACTGAGGCCCTGTTTGGTT 60.468 55.000 0.00 0.00 0.00 3.67
2566 2580 1.151450 CACTGAGGCCCTGTTTGGT 59.849 57.895 0.00 0.00 0.00 3.67
2567 2581 0.890996 GACACTGAGGCCCTGTTTGG 60.891 60.000 0.00 0.00 0.00 3.28
2568 2582 0.109342 AGACACTGAGGCCCTGTTTG 59.891 55.000 0.00 0.00 0.00 2.93
2569 2583 0.398318 GAGACACTGAGGCCCTGTTT 59.602 55.000 0.00 0.00 0.00 2.83
2570 2584 1.484444 GGAGACACTGAGGCCCTGTT 61.484 60.000 0.00 0.00 0.00 3.16
2571 2585 1.915769 GGAGACACTGAGGCCCTGT 60.916 63.158 0.00 0.00 0.00 4.00
2572 2586 1.915266 TGGAGACACTGAGGCCCTG 60.915 63.158 0.00 0.00 33.40 4.45
2573 2587 2.533435 TGGAGACACTGAGGCCCT 59.467 61.111 0.00 0.00 33.40 5.19
2626 2640 5.512942 TTCCCAAGGACTGAAACATCATA 57.487 39.130 0.00 0.00 0.00 2.15
2659 2673 5.474876 TGAGAGCTTCTTTTCAATTCCCTTC 59.525 40.000 0.00 0.00 0.00 3.46
2664 2678 9.905171 ATAAACTTGAGAGCTTCTTTTCAATTC 57.095 29.630 0.00 0.00 0.00 2.17
2700 2714 9.787532 AAAATTTACTGATACATCGAAATGTGG 57.212 29.630 1.88 0.00 45.72 4.17
2706 2720 8.672815 TCATGCAAAATTTACTGATACATCGAA 58.327 29.630 0.00 0.00 0.00 3.71
2717 2731 6.209391 ACCAACTAGCTCATGCAAAATTTACT 59.791 34.615 0.00 0.00 42.74 2.24
2728 2742 4.391216 GCTATATGCACCAACTAGCTCATG 59.609 45.833 0.00 0.00 42.31 3.07
2729 2743 4.285517 AGCTATATGCACCAACTAGCTCAT 59.714 41.667 10.04 0.00 40.76 2.90
2733 2747 4.220821 TCCTAGCTATATGCACCAACTAGC 59.779 45.833 0.00 0.00 45.94 3.42
2756 2770 2.484264 GCTAAGCTTTCATGTTCCGTGT 59.516 45.455 3.20 0.00 0.00 4.49
2759 2773 2.744202 ACTGCTAAGCTTTCATGTTCCG 59.256 45.455 3.20 0.00 0.00 4.30
2793 2807 7.392113 CCCCAAAAGTAGTTGATTACACATGTA 59.608 37.037 0.00 0.00 0.00 2.29
2802 2816 5.327737 TGGTACCCCAAAAGTAGTTGATT 57.672 39.130 10.07 0.00 37.98 2.57
2843 2857 5.303845 TCACATTAGAGATGACCAGATCCTG 59.696 44.000 0.00 0.00 0.00 3.86
2847 2861 8.751242 CAGATATCACATTAGAGATGACCAGAT 58.249 37.037 5.32 0.00 0.00 2.90
2956 2970 2.957680 TGTCACACCTGCATCAACAAAT 59.042 40.909 0.00 0.00 0.00 2.32
2960 2974 1.200716 CCATGTCACACCTGCATCAAC 59.799 52.381 0.00 0.00 0.00 3.18
2974 2988 7.818930 TCCTTTTTCATAAAATCTTGCCATGTC 59.181 33.333 0.00 0.00 33.05 3.06
3063 3077 3.418684 AGCCGACAATTTACTGGTTCT 57.581 42.857 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.