Multiple sequence alignment - TraesCS1A01G229700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G229700 chr1A 100.000 7622 0 0 1 7622 402251803 402259424 0.000000e+00 14076.0
1 TraesCS1A01G229700 chr1B 93.973 4845 202 45 855 5647 433607135 433602329 0.000000e+00 7247.0
2 TraesCS1A01G229700 chr1B 93.675 1581 64 14 5646 7197 433602152 433600579 0.000000e+00 2333.0
3 TraesCS1A01G229700 chr1D 88.917 1949 143 30 851 2773 320593947 320592046 0.000000e+00 2335.0
4 TraesCS1A01G229700 chr1D 86.133 1637 120 44 5649 7213 320587931 320586330 0.000000e+00 1666.0
5 TraesCS1A01G229700 chr1D 90.090 777 61 8 4 769 389462004 389462775 0.000000e+00 994.0
6 TraesCS1A01G229700 chr1D 92.057 491 33 1 3168 3652 320591541 320591051 0.000000e+00 686.0
7 TraesCS1A01G229700 chr1D 83.939 660 57 23 3821 4436 320590991 320590337 3.060000e-163 586.0
8 TraesCS1A01G229700 chr1D 90.217 368 24 5 4662 5021 320589094 320588731 3.220000e-128 470.0
9 TraesCS1A01G229700 chr1D 80.108 558 48 17 5072 5573 320588720 320588170 2.620000e-94 357.0
10 TraesCS1A01G229700 chr1D 88.000 250 20 5 4423 4662 320590281 320590032 3.480000e-73 287.0
11 TraesCS1A01G229700 chr1D 84.211 190 13 8 7193 7381 371188867 371189040 1.320000e-37 169.0
12 TraesCS1A01G229700 chr1D 87.200 125 11 4 7486 7605 320586136 320586012 3.710000e-28 137.0
13 TraesCS1A01G229700 chr1D 82.822 163 17 5 7201 7363 121710336 121710185 1.330000e-27 135.0
14 TraesCS1A01G229700 chr1D 80.982 163 19 9 7201 7363 140964782 140964932 1.340000e-22 119.0
15 TraesCS1A01G229700 chr1D 90.000 60 6 0 3702 3761 320591042 320590983 2.280000e-10 78.7
16 TraesCS1A01G229700 chr7A 88.689 778 71 6 4 768 189716977 189717750 0.000000e+00 933.0
17 TraesCS1A01G229700 chr7A 88.906 640 61 5 131 769 156127629 156128259 0.000000e+00 780.0
18 TraesCS1A01G229700 chr2D 88.318 779 72 7 4 769 4377252 4378024 0.000000e+00 917.0
19 TraesCS1A01G229700 chr2D 88.062 779 75 6 4 769 4320528 4321301 0.000000e+00 907.0
20 TraesCS1A01G229700 chr2D 85.463 681 92 5 1 680 367964684 367965358 0.000000e+00 702.0
21 TraesCS1A01G229700 chr2D 81.595 163 22 5 7201 7363 158078141 158078295 2.230000e-25 128.0
22 TraesCS1A01G229700 chr5D 87.852 782 72 7 4 769 543511663 543510889 0.000000e+00 896.0
23 TraesCS1A01G229700 chr5D 85.556 180 16 7 7196 7374 15560370 15560540 6.080000e-41 180.0
24 TraesCS1A01G229700 chr5D 82.209 163 16 11 7206 7362 132319639 132319484 2.230000e-25 128.0
25 TraesCS1A01G229700 chr5D 82.468 154 17 7 7206 7359 216040751 216040894 8.030000e-25 126.0
26 TraesCS1A01G229700 chr5D 81.481 162 19 9 7206 7362 31607387 31607232 1.040000e-23 122.0
27 TraesCS1A01G229700 chr2B 85.234 684 88 10 4 680 744874854 744874177 0.000000e+00 691.0
28 TraesCS1A01G229700 chr4D 85.888 659 79 11 5 652 480296680 480297335 0.000000e+00 689.0
29 TraesCS1A01G229700 chr4D 83.240 179 14 7 7195 7373 465125309 465125471 4.760000e-32 150.0
30 TraesCS1A01G229700 chr4D 82.320 181 16 8 7196 7376 497603446 497603610 7.970000e-30 143.0
31 TraesCS1A01G229700 chr4D 81.667 180 15 9 7201 7380 335890591 335890752 4.800000e-27 134.0
32 TraesCS1A01G229700 chr4D 81.503 173 22 4 7201 7373 347531461 347531623 4.800000e-27 134.0
33 TraesCS1A01G229700 chr4D 83.007 153 16 7 7201 7353 178015077 178015219 6.210000e-26 130.0
34 TraesCS1A01G229700 chr4D 82.993 147 17 7 7227 7373 105005623 105005485 8.030000e-25 126.0
35 TraesCS1A01G229700 chrUn 84.270 178 12 7 7196 7373 320881578 320881739 7.920000e-35 159.0
36 TraesCS1A01G229700 chrUn 81.609 174 19 10 7201 7373 98021730 98021891 1.730000e-26 132.0
37 TraesCS1A01G229700 chrUn 80.000 180 20 9 7201 7380 42175681 42175518 1.340000e-22 119.0
38 TraesCS1A01G229700 chrUn 80.000 185 18 14 7196 7377 99857863 99858031 1.340000e-22 119.0
39 TraesCS1A01G229700 chrUn 80.337 178 16 12 7201 7376 132053531 132053371 4.830000e-22 117.0
40 TraesCS1A01G229700 chrUn 79.474 190 18 15 7193 7378 382102278 382102450 1.740000e-21 115.0
41 TraesCS1A01G229700 chrUn 79.775 178 19 8 7193 7369 468628738 468628899 6.250000e-21 113.0
42 TraesCS1A01G229700 chrUn 79.235 183 21 10 7196 7378 309059280 309059115 2.250000e-20 111.0
43 TraesCS1A01G229700 chrUn 79.235 183 21 10 7196 7378 391833206 391833041 2.250000e-20 111.0
44 TraesCS1A01G229700 chrUn 78.857 175 21 9 7199 7373 175474415 175474573 3.760000e-18 104.0
45 TraesCS1A01G229700 chr6D 83.243 185 13 11 7196 7379 287890364 287890197 3.680000e-33 154.0
46 TraesCS1A01G229700 chr6D 82.888 187 15 10 7193 7379 437151099 437151268 1.320000e-32 152.0
47 TraesCS1A01G229700 chr6D 87.121 132 5 5 7244 7375 460488955 460489074 1.030000e-28 139.0
48 TraesCS1A01G229700 chr6D 82.123 179 14 8 7196 7373 37534207 37534368 3.710000e-28 137.0
49 TraesCS1A01G229700 chr6D 81.461 178 17 10 7196 7373 11717492 11717653 1.730000e-26 132.0
50 TraesCS1A01G229700 chr6D 83.019 159 13 6 7225 7382 124663241 124663386 1.730000e-26 132.0
51 TraesCS1A01G229700 chr6D 81.461 178 16 14 7196 7373 29378177 29378337 6.210000e-26 130.0
52 TraesCS1A01G229700 chr6D 81.503 173 14 12 7196 7367 427220988 427220833 8.030000e-25 126.0
53 TraesCS1A01G229700 chr6D 81.761 159 17 10 7206 7359 198777670 198777821 1.040000e-23 122.0
54 TraesCS1A01G229700 chr6D 83.099 142 16 4 7232 7373 323828769 323828902 1.040000e-23 122.0
55 TraesCS1A01G229700 chr6D 80.982 163 18 11 7206 7362 76835955 76835800 4.830000e-22 117.0
56 TraesCS1A01G229700 chr6D 78.431 204 21 15 7196 7393 302061362 302061548 2.250000e-20 111.0
57 TraesCS1A01G229700 chr6D 79.878 164 21 11 7201 7359 87175190 87175346 8.090000e-20 110.0
58 TraesCS1A01G229700 chr7B 83.146 178 19 9 7196 7373 440068274 440068108 1.320000e-32 152.0
59 TraesCS1A01G229700 chr4B 83.436 163 15 10 7201 7363 475350736 475350886 2.870000e-29 141.0
60 TraesCS1A01G229700 chr3B 83.436 163 16 8 7201 7363 421190532 421190381 2.870000e-29 141.0
61 TraesCS1A01G229700 chr5B 82.081 173 20 5 7201 7373 655854222 655854383 3.710000e-28 137.0
62 TraesCS1A01G229700 chr5A 82.822 163 15 10 7201 7363 274511866 274511717 4.800000e-27 134.0
63 TraesCS1A01G229700 chr6B 81.935 155 20 5 7206 7359 547851571 547851718 2.890000e-24 124.0
64 TraesCS1A01G229700 chr7D 86.567 67 8 1 2079 2145 8279891 8279826 1.060000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G229700 chr1A 402251803 402259424 7621 False 14076.000000 14076 100.000000 1 7622 1 chr1A.!!$F1 7621
1 TraesCS1A01G229700 chr1B 433600579 433607135 6556 True 4790.000000 7247 93.824000 855 7197 2 chr1B.!!$R1 6342
2 TraesCS1A01G229700 chr1D 389462004 389462775 771 False 994.000000 994 90.090000 4 769 1 chr1D.!!$F3 765
3 TraesCS1A01G229700 chr1D 320586012 320593947 7935 True 733.633333 2335 87.396778 851 7605 9 chr1D.!!$R2 6754
4 TraesCS1A01G229700 chr7A 189716977 189717750 773 False 933.000000 933 88.689000 4 768 1 chr7A.!!$F2 764
5 TraesCS1A01G229700 chr7A 156127629 156128259 630 False 780.000000 780 88.906000 131 769 1 chr7A.!!$F1 638
6 TraesCS1A01G229700 chr2D 4377252 4378024 772 False 917.000000 917 88.318000 4 769 1 chr2D.!!$F2 765
7 TraesCS1A01G229700 chr2D 4320528 4321301 773 False 907.000000 907 88.062000 4 769 1 chr2D.!!$F1 765
8 TraesCS1A01G229700 chr2D 367964684 367965358 674 False 702.000000 702 85.463000 1 680 1 chr2D.!!$F4 679
9 TraesCS1A01G229700 chr5D 543510889 543511663 774 True 896.000000 896 87.852000 4 769 1 chr5D.!!$R3 765
10 TraesCS1A01G229700 chr2B 744874177 744874854 677 True 691.000000 691 85.234000 4 680 1 chr2B.!!$R1 676
11 TraesCS1A01G229700 chr4D 480296680 480297335 655 False 689.000000 689 85.888000 5 652 1 chr4D.!!$F5 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 856 0.039527 ACACGGCGATTTTTCAAGCC 60.040 50.000 16.62 0.00 45.67 4.35 F
826 864 0.321346 ATTTTTCAAGCCGCTTGGGG 59.679 50.000 28.54 7.83 41.33 4.96 F
847 885 0.446616 GCCAACGGTCGGAGATTTTC 59.553 55.000 0.00 0.00 40.67 2.29 F
1322 1361 0.517316 CCTAGCAAATATTCCGCGCC 59.483 55.000 0.00 0.00 0.00 6.53 F
2129 2203 0.877071 CCGCTATTTGCCATAGCCTG 59.123 55.000 15.85 6.96 42.89 4.85 F
2137 2211 1.985473 TGCCATAGCCTGCCATTTAG 58.015 50.000 0.00 0.00 38.69 1.85 F
2162 2236 2.064434 TGGTGAGGACATGTGCAAAA 57.936 45.000 20.21 1.25 0.00 2.44 F
3033 3111 3.181451 TGGCTAGCTCCTGTAATGGATTG 60.181 47.826 15.72 0.00 35.30 2.67 F
3787 4036 2.189594 TGGATGCCTTGAACAGTGAG 57.810 50.000 0.00 0.00 0.00 3.51 F
5012 6333 1.139256 TCACGTAGCAAAGACCCAACA 59.861 47.619 0.00 0.00 0.00 3.33 F
5969 7524 0.179134 CTACCGTACTGCTGTCAGGC 60.179 60.000 14.47 0.00 44.54 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2272 0.031917 TCCCCATCCAAAGCATGCAT 60.032 50.000 21.98 4.57 0.00 3.96 R
2244 2318 0.751643 ATGTTATGCGTTGGCCCTCC 60.752 55.000 0.00 0.00 38.85 4.30 R
2727 2803 1.204146 GTTAGGTCAGGATCCCAGCA 58.796 55.000 8.55 0.00 0.00 4.41 R
3033 3111 2.290093 GCAGCTGATTCCTGAATACAGC 59.710 50.000 20.43 22.65 43.74 4.40 R
3548 3797 1.818060 GCTTATGTGGCATGAACACCA 59.182 47.619 15.56 2.51 38.05 4.17 R
3784 4033 2.041620 AGCACCCATTTTTCCTAGCTCA 59.958 45.455 0.00 0.00 0.00 4.26 R
3787 4036 2.164422 GTCAGCACCCATTTTTCCTAGC 59.836 50.000 0.00 0.00 0.00 3.42 R
4557 4927 0.109272 GCTTTAAGGGCTTTCGGTGC 60.109 55.000 0.00 0.00 0.00 5.01 R
5038 6359 1.228429 GTGGGCTGTTTGGCAGGTA 60.228 57.895 0.00 0.00 45.14 3.08 R
6191 7771 0.031616 ACCCTGTTTGCTTTCCCCAA 60.032 50.000 0.00 0.00 0.00 4.12 R
7190 8839 0.179065 GGAACGGAGGGGGTAAATCG 60.179 60.000 0.00 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 164 0.851332 TCCTCTCACTCCTCCTCCCA 60.851 60.000 0.00 0.00 0.00 4.37
152 166 0.040351 CTCTCACTCCTCCTCCCACA 59.960 60.000 0.00 0.00 0.00 4.17
170 184 0.545309 CACCTCTTCCCACTCCTCCA 60.545 60.000 0.00 0.00 0.00 3.86
202 216 0.462225 TGTTCAACGTCAAGGCCGAA 60.462 50.000 0.00 0.00 0.00 4.30
205 219 2.281276 AACGTCAAGGCCGAACCC 60.281 61.111 0.00 0.00 40.58 4.11
206 220 3.109592 AACGTCAAGGCCGAACCCA 62.110 57.895 0.00 0.00 40.58 4.51
262 276 2.106074 GCCCGCATCGTCATCAACA 61.106 57.895 0.00 0.00 0.00 3.33
267 281 1.453155 GCATCGTCATCAACAAGGGT 58.547 50.000 0.00 0.00 0.00 4.34
660 695 2.400158 CGACTTCGCCTCTCTCGGT 61.400 63.158 0.00 0.00 0.00 4.69
691 726 4.082300 TCGGCCTGTAGTCACGTTTATTTA 60.082 41.667 0.00 0.00 0.00 1.40
692 727 4.807304 CGGCCTGTAGTCACGTTTATTTAT 59.193 41.667 0.00 0.00 0.00 1.40
759 797 0.665835 AATGCACTGTTTCGCCGAAA 59.334 45.000 8.43 8.43 0.00 3.46
769 807 0.599060 TTCGCCGAAAATTTGTCCCC 59.401 50.000 0.00 0.00 0.00 4.81
770 808 1.214325 CGCCGAAAATTTGTCCCCC 59.786 57.895 0.00 0.00 0.00 5.40
771 809 1.528292 CGCCGAAAATTTGTCCCCCA 61.528 55.000 0.00 0.00 0.00 4.96
772 810 0.246360 GCCGAAAATTTGTCCCCCAG 59.754 55.000 0.00 0.00 0.00 4.45
773 811 0.894835 CCGAAAATTTGTCCCCCAGG 59.105 55.000 0.00 0.00 0.00 4.45
774 812 0.246360 CGAAAATTTGTCCCCCAGGC 59.754 55.000 0.00 0.00 0.00 4.85
775 813 1.644509 GAAAATTTGTCCCCCAGGCT 58.355 50.000 0.00 0.00 0.00 4.58
776 814 1.276138 GAAAATTTGTCCCCCAGGCTG 59.724 52.381 7.75 7.75 0.00 4.85
777 815 0.486879 AAATTTGTCCCCCAGGCTGA 59.513 50.000 17.94 0.00 0.00 4.26
778 816 0.712380 AATTTGTCCCCCAGGCTGAT 59.288 50.000 17.94 0.00 0.00 2.90
779 817 0.712380 ATTTGTCCCCCAGGCTGATT 59.288 50.000 17.94 0.00 0.00 2.57
780 818 0.486879 TTTGTCCCCCAGGCTGATTT 59.513 50.000 17.94 0.00 0.00 2.17
781 819 0.486879 TTGTCCCCCAGGCTGATTTT 59.513 50.000 17.94 0.00 0.00 1.82
782 820 1.377690 TGTCCCCCAGGCTGATTTTA 58.622 50.000 17.94 0.00 0.00 1.52
783 821 1.005450 TGTCCCCCAGGCTGATTTTAC 59.995 52.381 17.94 7.94 0.00 2.01
784 822 1.285078 GTCCCCCAGGCTGATTTTACT 59.715 52.381 17.94 0.00 0.00 2.24
785 823 1.284785 TCCCCCAGGCTGATTTTACTG 59.715 52.381 17.94 0.00 0.00 2.74
786 824 1.106285 CCCCAGGCTGATTTTACTGC 58.894 55.000 17.94 0.00 0.00 4.40
790 828 2.868253 GGCTGATTTTACTGCCGGT 58.132 52.632 1.90 0.00 42.86 5.28
791 829 0.733150 GGCTGATTTTACTGCCGGTC 59.267 55.000 1.90 0.00 42.86 4.79
792 830 0.733150 GCTGATTTTACTGCCGGTCC 59.267 55.000 1.90 0.00 0.00 4.46
793 831 1.006832 CTGATTTTACTGCCGGTCCG 58.993 55.000 3.60 3.60 0.00 4.79
794 832 1.022451 TGATTTTACTGCCGGTCCGC 61.022 55.000 5.50 1.95 0.00 5.54
795 833 1.712018 GATTTTACTGCCGGTCCGCC 61.712 60.000 5.50 0.00 0.00 6.13
796 834 3.905437 TTTTACTGCCGGTCCGCCC 62.905 63.158 5.50 0.00 0.00 6.13
811 849 2.675075 CCCCCACACGGCGATTTT 60.675 61.111 16.62 0.00 0.00 1.82
812 850 2.272447 CCCCCACACGGCGATTTTT 61.272 57.895 16.62 0.00 0.00 1.94
813 851 1.211709 CCCCACACGGCGATTTTTC 59.788 57.895 16.62 0.00 0.00 2.29
814 852 1.519751 CCCCACACGGCGATTTTTCA 61.520 55.000 16.62 0.00 0.00 2.69
815 853 0.312416 CCCACACGGCGATTTTTCAA 59.688 50.000 16.62 0.00 0.00 2.69
816 854 1.665735 CCCACACGGCGATTTTTCAAG 60.666 52.381 16.62 0.00 0.00 3.02
817 855 1.052287 CACACGGCGATTTTTCAAGC 58.948 50.000 16.62 0.00 0.00 4.01
818 856 0.039527 ACACGGCGATTTTTCAAGCC 60.040 50.000 16.62 0.00 45.67 4.35
820 858 3.767301 GGCGATTTTTCAAGCCGC 58.233 55.556 0.00 0.00 44.45 6.53
821 859 1.212751 GGCGATTTTTCAAGCCGCT 59.787 52.632 0.00 0.00 44.56 5.52
822 860 0.388520 GGCGATTTTTCAAGCCGCTT 60.389 50.000 0.00 0.00 44.56 4.68
823 861 0.710017 GCGATTTTTCAAGCCGCTTG 59.290 50.000 24.60 24.60 42.25 4.01
824 862 1.339711 CGATTTTTCAAGCCGCTTGG 58.660 50.000 28.54 13.26 41.33 3.61
825 863 1.713597 GATTTTTCAAGCCGCTTGGG 58.286 50.000 28.54 8.54 41.33 4.12
826 864 0.321346 ATTTTTCAAGCCGCTTGGGG 59.679 50.000 28.54 7.83 41.33 4.96
827 865 1.753368 TTTTTCAAGCCGCTTGGGGG 61.753 55.000 28.54 7.48 41.33 5.40
843 881 3.782443 GGGCCAACGGTCGGAGAT 61.782 66.667 4.39 0.00 40.67 2.75
844 882 2.267961 GGCCAACGGTCGGAGATT 59.732 61.111 0.00 0.00 40.67 2.40
845 883 1.376812 GGCCAACGGTCGGAGATTT 60.377 57.895 0.00 0.00 40.67 2.17
846 884 0.958876 GGCCAACGGTCGGAGATTTT 60.959 55.000 0.00 0.00 40.67 1.82
847 885 0.446616 GCCAACGGTCGGAGATTTTC 59.553 55.000 0.00 0.00 40.67 2.29
848 886 1.944430 GCCAACGGTCGGAGATTTTCT 60.944 52.381 0.00 0.00 40.67 2.52
849 887 2.423577 CCAACGGTCGGAGATTTTCTT 58.576 47.619 0.00 0.00 40.67 2.52
903 942 5.669164 ACCTAGAGTGGCAAAAACAAAAA 57.331 34.783 0.00 0.00 0.00 1.94
907 946 5.669164 AGAGTGGCAAAAACAAAAACCTA 57.331 34.783 0.00 0.00 0.00 3.08
908 947 5.416083 AGAGTGGCAAAAACAAAAACCTAC 58.584 37.500 0.00 0.00 0.00 3.18
974 1013 1.550976 AGCTAAACCCTGAGACCGAAG 59.449 52.381 0.00 0.00 0.00 3.79
975 1014 1.549170 GCTAAACCCTGAGACCGAAGA 59.451 52.381 0.00 0.00 0.00 2.87
976 1015 2.417515 GCTAAACCCTGAGACCGAAGAG 60.418 54.545 0.00 0.00 0.00 2.85
978 1017 3.622514 CCCTGAGACCGAAGAGGG 58.377 66.667 0.00 0.00 46.96 4.30
979 1018 2.060980 CCCTGAGACCGAAGAGGGG 61.061 68.421 0.00 0.00 46.96 4.79
980 1019 1.000486 CCTGAGACCGAAGAGGGGA 60.000 63.158 0.00 0.00 46.96 4.81
981 1020 1.324005 CCTGAGACCGAAGAGGGGAC 61.324 65.000 0.00 0.00 46.96 4.46
1024 1063 1.503542 CAAAGGATGCTGCGGTGTC 59.496 57.895 0.00 0.00 0.00 3.67
1302 1341 1.153647 CTCGGTAATCACAGCCGCA 60.154 57.895 0.00 0.00 44.58 5.69
1322 1361 0.517316 CCTAGCAAATATTCCGCGCC 59.483 55.000 0.00 0.00 0.00 6.53
1343 1382 2.328099 CCCACTTCTGACCGCTTGC 61.328 63.158 0.00 0.00 0.00 4.01
1344 1383 1.302033 CCACTTCTGACCGCTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
1349 1388 3.741476 CTGACCGCTTGCTTGGCC 61.741 66.667 0.00 0.00 0.00 5.36
1361 1400 2.034066 TTGGCCTGTGGTAGCTGC 59.966 61.111 3.32 0.00 0.00 5.25
1411 1450 4.638421 TGCTGTTAGGTGTTTATGTATGGC 59.362 41.667 0.00 0.00 0.00 4.40
1454 1493 3.139850 TCCGAGCGAAACCAACAAATTA 58.860 40.909 0.00 0.00 0.00 1.40
1532 1571 4.133796 GGCAGCGTCCCCATTTGC 62.134 66.667 0.00 0.00 0.00 3.68
1553 1592 4.997395 TGCCTTCTTTTCTGTCAGACATAC 59.003 41.667 2.97 0.00 0.00 2.39
1560 1602 7.445121 TCTTTTCTGTCAGACATACTGTTCAT 58.555 34.615 2.97 0.00 45.86 2.57
1570 1612 7.278646 TCAGACATACTGTTCATGTTTGATAGC 59.721 37.037 10.97 0.00 40.55 2.97
1572 1614 7.607607 AGACATACTGTTCATGTTTGATAGCAA 59.392 33.333 0.00 0.00 36.76 3.91
1593 1635 3.410631 TGAACTAACATGGCCTTTCGA 57.589 42.857 3.32 0.00 0.00 3.71
1594 1636 3.071479 TGAACTAACATGGCCTTTCGAC 58.929 45.455 3.32 0.00 0.00 4.20
1691 1733 1.533731 GAAACGATTTCTGCCGGTTGA 59.466 47.619 1.90 0.00 35.67 3.18
1717 1769 3.790126 AGGCAGGACCCATTTAATGTTT 58.210 40.909 4.15 0.00 40.58 2.83
1721 1773 4.690280 GCAGGACCCATTTAATGTTTGTTG 59.310 41.667 4.15 0.00 0.00 3.33
1731 1783 8.628280 CCATTTAATGTTTGTTGGGAATTTTGT 58.372 29.630 4.15 0.00 0.00 2.83
1736 1788 8.606040 AATGTTTGTTGGGAATTTTGTATGAG 57.394 30.769 0.00 0.00 0.00 2.90
1832 1886 5.183140 ACAAGTTTGGAACCATAGTATGTGC 59.817 40.000 9.28 0.00 0.00 4.57
1834 1888 5.570320 AGTTTGGAACCATAGTATGTGCTT 58.430 37.500 9.28 0.00 0.00 3.91
1890 1944 7.389330 TGAAATGAACGACATGTGGTACTATTT 59.611 33.333 14.27 17.87 39.39 1.40
1908 1962 6.816136 ACTATTTGACCAAAACTTTTCCAGG 58.184 36.000 0.00 0.00 33.56 4.45
1912 1966 1.681264 ACCAAAACTTTTCCAGGCTCG 59.319 47.619 0.00 0.00 0.00 5.03
1966 2021 9.768662 AAACAAAGAAATTCTGAAGCACATTAT 57.231 25.926 0.00 0.00 0.00 1.28
1968 2023 8.031277 ACAAAGAAATTCTGAAGCACATTATCC 58.969 33.333 0.00 0.00 0.00 2.59
2050 2107 2.802787 AAATAGCGCGCTATCTCAGT 57.197 45.000 43.67 29.69 38.20 3.41
2075 2132 2.700773 GCGTTTGGAGGGGCATCAC 61.701 63.158 0.00 0.00 0.00 3.06
2077 2134 1.303317 GTTTGGAGGGGCATCACGT 60.303 57.895 0.00 0.00 0.00 4.49
2128 2202 0.890996 GCCGCTATTTGCCATAGCCT 60.891 55.000 15.85 0.00 42.89 4.58
2129 2203 0.877071 CCGCTATTTGCCATAGCCTG 59.123 55.000 15.85 6.96 42.89 4.85
2137 2211 1.985473 TGCCATAGCCTGCCATTTAG 58.015 50.000 0.00 0.00 38.69 1.85
2154 2228 5.711976 CCATTTAGAACTTTGGTGAGGACAT 59.288 40.000 0.00 0.00 0.00 3.06
2162 2236 2.064434 TGGTGAGGACATGTGCAAAA 57.936 45.000 20.21 1.25 0.00 2.44
2244 2318 8.901748 CAAACAAACTGAACCAATTCTATAACG 58.098 33.333 0.00 0.00 35.69 3.18
2245 2319 7.141100 ACAAACTGAACCAATTCTATAACGG 57.859 36.000 0.00 0.00 35.69 4.44
2373 2449 4.360964 GCTGTTTGCGGCATGCCA 62.361 61.111 34.93 15.49 45.96 4.92
2442 2518 3.753272 CCACCACACCTCTTTTACTGATG 59.247 47.826 0.00 0.00 0.00 3.07
2503 2579 4.365514 TGCTTGGAGACCAACTTCATTA 57.634 40.909 0.00 0.00 38.75 1.90
2511 2587 7.812648 TGGAGACCAACTTCATTAAAAATACG 58.187 34.615 0.00 0.00 0.00 3.06
2589 2665 9.520515 ACTGTAGTTATTTCATGTTTCTGGATT 57.479 29.630 0.00 0.00 0.00 3.01
2670 2746 4.025480 GCAATGTTCAACTTCCTTTTGCTG 60.025 41.667 0.00 0.00 36.27 4.41
2671 2747 5.111293 CAATGTTCAACTTCCTTTTGCTGT 58.889 37.500 0.00 0.00 0.00 4.40
2712 2788 9.577222 AGTTGTTAATAGTAAAGGCCTTGTTTA 57.423 29.630 21.33 11.89 0.00 2.01
2813 2890 6.990349 CCAAACAAGACCTAAGTTGAGACTTA 59.010 38.462 0.00 0.00 44.13 2.24
2827 2904 8.189119 AGTTGAGACTTAAGATATCCAGGATC 57.811 38.462 10.09 0.00 29.87 3.36
2841 2918 4.895836 TCCAGGATCCAAGAGATAAGGAA 58.104 43.478 15.82 0.00 34.42 3.36
2894 2972 6.880484 TCCCGAAGCACTTTACAAGATAATA 58.120 36.000 0.00 0.00 0.00 0.98
3033 3111 3.181451 TGGCTAGCTCCTGTAATGGATTG 60.181 47.826 15.72 0.00 35.30 2.67
3263 3506 5.977129 CACAAACTTACAGGAACATGAAACC 59.023 40.000 0.00 0.00 0.00 3.27
3442 3685 8.150945 GCAGACCCTGAATAGTTCTATAATTCA 58.849 37.037 0.00 0.00 37.30 2.57
3500 3749 6.824958 TTGGATAATAGGCCACTTTAGTCT 57.175 37.500 5.01 0.00 33.01 3.24
3598 3847 5.080337 TCTATCCTAGTGCCCAAGTCATAG 58.920 45.833 0.00 0.00 0.00 2.23
3689 3938 7.517614 TCTTGTTTCCAAGTGTTGCAATATA 57.482 32.000 0.59 0.00 46.70 0.86
3719 3968 8.449251 ACATTGCCATGAAAAAGTAATTTTGT 57.551 26.923 4.52 0.00 41.27 2.83
3784 4033 5.263599 TCATTATTGGATGCCTTGAACAGT 58.736 37.500 0.00 0.00 0.00 3.55
3785 4034 5.125900 TCATTATTGGATGCCTTGAACAGTG 59.874 40.000 0.00 0.00 0.00 3.66
3787 4036 2.189594 TGGATGCCTTGAACAGTGAG 57.810 50.000 0.00 0.00 0.00 3.51
3863 4112 5.711506 TCACAGATGTGTTCAGCCAAAATAT 59.288 36.000 12.43 0.00 45.76 1.28
3913 4167 8.677148 TTTCTAAACTTCAGTGATGTAGCTTT 57.323 30.769 11.72 5.76 0.00 3.51
3948 4202 3.667217 ATGTGCACATGCCCCTCCC 62.667 63.158 30.92 0.00 41.18 4.30
3949 4203 4.052518 GTGCACATGCCCCTCCCT 62.053 66.667 13.17 0.00 41.18 4.20
4089 4362 4.783055 TGGGTAGAACTACAAACTTTGCA 58.217 39.130 12.94 0.00 37.78 4.08
4239 4536 4.930592 GAGAAGGAGCTCCAGTGC 57.069 61.111 33.90 18.91 38.89 4.40
4476 4843 9.681062 TTTATGCTTACCAGAAGCTATTTTAGT 57.319 29.630 10.39 0.00 43.38 2.24
4557 4927 8.299570 ACTGTTTCAGTGAATTATTTAGGCTTG 58.700 33.333 6.36 0.00 43.63 4.01
4598 4970 1.672356 CAGTGGGAAAGCCACCTCG 60.672 63.158 0.00 0.00 38.80 4.63
4642 5014 7.084486 GGAAAGCCAACTAGATTTTGTACTTG 58.916 38.462 0.00 0.00 0.00 3.16
4645 5017 7.203255 AGCCAACTAGATTTTGTACTTGTTC 57.797 36.000 0.00 0.00 32.07 3.18
4951 6272 3.308530 CACAAACTTTTGAATCCTCGGC 58.691 45.455 8.69 0.00 40.55 5.54
5012 6333 1.139256 TCACGTAGCAAAGACCCAACA 59.861 47.619 0.00 0.00 0.00 3.33
5038 6359 2.366916 CTCAAGATAACCCGCTCTCCAT 59.633 50.000 0.00 0.00 0.00 3.41
5069 6390 1.833630 CAGCCCACCTAGAACAGATGA 59.166 52.381 0.00 0.00 0.00 2.92
5144 6465 2.872245 AGTGACATGAACAAAGTGACCG 59.128 45.455 0.00 0.00 0.00 4.79
5196 6523 3.745797 GCTCCTGTTGTCTTCTTTGGACT 60.746 47.826 0.00 0.00 35.04 3.85
5278 6605 5.598417 AGGACCTTTGCTCAAGTGTTTAAAT 59.402 36.000 0.00 0.00 0.00 1.40
5430 6776 9.699410 TTGGGAAATCTGATGTTGAATTAGTAT 57.301 29.630 0.00 0.00 0.00 2.12
5526 6891 6.203808 AGTTTGAACTTTAAGGTTGTGGAC 57.796 37.500 7.81 2.02 35.21 4.02
5573 6950 7.333423 TGCACAAGAGTAATTGATGGTAGTAAC 59.667 37.037 0.00 0.00 34.20 2.50
5594 6971 2.104111 CTCGAATTACCATACCCCAGCA 59.896 50.000 0.00 0.00 0.00 4.41
5647 7024 2.107552 GCATGGGTTTATACAGGGCCTA 59.892 50.000 5.28 0.00 0.00 3.93
5749 7304 2.124736 ATCGACCACCATTGCCCG 60.125 61.111 0.00 0.00 0.00 6.13
5865 7420 2.022520 GGCTATTACCCACGCAAGC 58.977 57.895 0.00 0.00 45.62 4.01
5959 7514 5.401531 AAATCACATGTGACTACCGTACT 57.598 39.130 30.09 8.81 43.11 2.73
5965 7520 1.538512 TGTGACTACCGTACTGCTGTC 59.461 52.381 0.00 0.00 0.00 3.51
5969 7524 0.179134 CTACCGTACTGCTGTCAGGC 60.179 60.000 14.47 0.00 44.54 4.85
5973 7528 1.801913 GTACTGCTGTCAGGCGTCG 60.802 63.158 0.00 0.00 44.54 5.12
6165 7745 4.632153 GAGTCACAGGTGTTGTCACTTAT 58.368 43.478 0.00 0.00 41.62 1.73
6191 7771 1.493022 TGTACTGCAGGACCTTGGTTT 59.507 47.619 26.37 0.00 0.00 3.27
6348 7928 7.980662 CCTGTCATTATTGATTGGTTGCATAAA 59.019 33.333 0.00 0.00 33.56 1.40
6455 8059 4.142359 TGTTGCATGTAAAGTTTCGTTGGT 60.142 37.500 0.00 0.00 0.00 3.67
6518 8122 3.953542 TGCTCATCTACTGTCTCCCTA 57.046 47.619 0.00 0.00 0.00 3.53
6612 8216 0.389948 CGAGTCAGGGTTTTCCTCGG 60.390 60.000 0.00 0.00 46.12 4.63
6629 8250 5.175859 TCCTCGGCAAACATAGAAACTAAG 58.824 41.667 0.00 0.00 0.00 2.18
6637 8258 6.426937 GCAAACATAGAAACTAAGTCTGGTCA 59.573 38.462 0.00 0.00 0.00 4.02
6638 8259 7.119846 GCAAACATAGAAACTAAGTCTGGTCAT 59.880 37.037 0.00 0.00 0.00 3.06
6639 8260 8.446273 CAAACATAGAAACTAAGTCTGGTCATG 58.554 37.037 0.00 0.00 0.00 3.07
6642 8263 8.543774 ACATAGAAACTAAGTCTGGTCATGATT 58.456 33.333 0.00 0.00 0.00 2.57
6645 8270 4.494091 ACTAAGTCTGGTCATGATTGGG 57.506 45.455 0.00 0.00 0.00 4.12
6703 8329 1.554160 CAAGTCCCTGAGATCAGCACT 59.446 52.381 4.23 5.74 42.47 4.40
6756 8389 7.202526 TCAGAAATCGGCAATATCCAAATTTC 58.797 34.615 0.00 8.71 37.75 2.17
6853 8486 1.265905 GGAACACTAAAAGGTGGTGCG 59.734 52.381 0.00 0.00 37.25 5.34
6875 8508 1.537202 GATTGCCGAGTCTTTGTGCTT 59.463 47.619 0.00 0.00 0.00 3.91
6889 8522 2.300433 TGTGCTTGCTGATTTCACACT 58.700 42.857 0.00 0.00 33.33 3.55
6959 8597 6.827641 TGCTTTTATGTTCGTTGATGTAGTC 58.172 36.000 0.00 0.00 0.00 2.59
6977 8615 4.961435 AGTCGTACTACAGTTTAGCCTC 57.039 45.455 0.00 0.00 0.00 4.70
7030 8668 0.972471 ACAGCTGCCCTATTTTGCCC 60.972 55.000 15.27 0.00 0.00 5.36
7032 8670 0.396278 AGCTGCCCTATTTTGCCCTC 60.396 55.000 0.00 0.00 0.00 4.30
7071 8711 6.037786 TCTTATCGTGAGACAGAATGGTTT 57.962 37.500 0.00 0.00 46.97 3.27
7072 8712 6.464222 TCTTATCGTGAGACAGAATGGTTTT 58.536 36.000 0.00 0.00 46.97 2.43
7073 8713 6.934645 TCTTATCGTGAGACAGAATGGTTTTT 59.065 34.615 0.00 0.00 46.97 1.94
7089 8729 4.646945 TGGTTTTTACTCAATGCAGTCCAA 59.353 37.500 0.00 0.00 0.00 3.53
7090 8730 4.982295 GGTTTTTACTCAATGCAGTCCAAC 59.018 41.667 0.00 0.00 0.00 3.77
7142 8782 5.416639 CACCCTTGATTGTGATGAGAATTGA 59.583 40.000 0.00 0.00 34.37 2.57
7160 8809 7.503549 AGAATTGACATGTGCTAGTATCATGA 58.496 34.615 21.15 0.00 40.64 3.07
7190 8839 0.690077 ATGGAACGGGGAGGGAGTAC 60.690 60.000 0.00 0.00 0.00 2.73
7198 8847 1.690893 GGGGAGGGAGTACGATTTACC 59.309 57.143 0.00 0.00 0.00 2.85
7207 8856 1.482182 GTACGATTTACCCCCTCCGTT 59.518 52.381 0.00 0.00 0.00 4.44
7210 8859 1.210538 GATTTACCCCCTCCGTTCCT 58.789 55.000 0.00 0.00 0.00 3.36
7211 8860 2.401568 GATTTACCCCCTCCGTTCCTA 58.598 52.381 0.00 0.00 0.00 2.94
7215 8864 2.574074 ACCCCCTCCGTTCCTAAATA 57.426 50.000 0.00 0.00 0.00 1.40
7216 8865 2.121948 ACCCCCTCCGTTCCTAAATAC 58.878 52.381 0.00 0.00 0.00 1.89
7217 8866 1.069668 CCCCCTCCGTTCCTAAATACG 59.930 57.143 0.00 0.00 37.50 3.06
7218 8867 1.758862 CCCCTCCGTTCCTAAATACGT 59.241 52.381 0.00 0.00 36.09 3.57
7221 8870 3.119029 CCCTCCGTTCCTAAATACGTGAA 60.119 47.826 0.00 0.00 36.09 3.18
7224 8873 4.737054 TCCGTTCCTAAATACGTGAAGTC 58.263 43.478 0.00 0.00 36.09 3.01
7229 8878 7.307573 CCGTTCCTAAATACGTGAAGTCTTTTT 60.308 37.037 0.00 0.00 36.09 1.94
7316 8965 7.697691 AGTTCATATTCACTTATTTTGCTCCG 58.302 34.615 0.00 0.00 0.00 4.63
7317 8966 7.336931 AGTTCATATTCACTTATTTTGCTCCGT 59.663 33.333 0.00 0.00 0.00 4.69
7318 8967 8.609176 GTTCATATTCACTTATTTTGCTCCGTA 58.391 33.333 0.00 0.00 0.00 4.02
7319 8968 8.902540 TCATATTCACTTATTTTGCTCCGTAT 57.097 30.769 0.00 0.00 0.00 3.06
7320 8969 8.773645 TCATATTCACTTATTTTGCTCCGTATG 58.226 33.333 0.00 0.00 0.00 2.39
7321 8970 8.559536 CATATTCACTTATTTTGCTCCGTATGT 58.440 33.333 0.00 0.00 0.00 2.29
7322 8971 9.772973 ATATTCACTTATTTTGCTCCGTATGTA 57.227 29.630 0.00 0.00 0.00 2.29
7323 8972 7.534085 TTCACTTATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
7324 8973 6.636705 TCACTTATTTTGCTCCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
7325 8974 6.755141 TCACTTATTTTGCTCCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
7326 8975 6.018994 CACTTATTTTGCTCCGTATGTAGTCC 60.019 42.308 0.00 0.00 0.00 3.85
7327 8976 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
7328 8977 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
7329 8978 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
7330 8979 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
7331 8980 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
7332 8981 6.904463 TTGCTCCGTATGTAGTCCATATTA 57.096 37.500 0.00 0.00 38.29 0.98
7333 8982 6.904463 TGCTCCGTATGTAGTCCATATTAA 57.096 37.500 0.00 0.00 38.29 1.40
7334 8983 7.292713 TGCTCCGTATGTAGTCCATATTAAA 57.707 36.000 0.00 0.00 38.29 1.52
7335 8984 7.728148 TGCTCCGTATGTAGTCCATATTAAAA 58.272 34.615 0.00 0.00 38.29 1.52
7336 8985 8.372459 TGCTCCGTATGTAGTCCATATTAAAAT 58.628 33.333 0.00 0.00 38.29 1.82
7337 8986 8.870879 GCTCCGTATGTAGTCCATATTAAAATC 58.129 37.037 0.00 0.00 38.29 2.17
7368 9017 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
7369 9018 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
7370 9019 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
7371 9020 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
7372 9021 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
7391 9040 7.179338 AGGGAGTAGTATATATTGCTTGACAGG 59.821 40.741 0.00 0.00 0.00 4.00
7392 9041 6.814146 GGAGTAGTATATATTGCTTGACAGGC 59.186 42.308 1.93 1.93 0.00 4.85
7408 9057 6.135290 TGACAGGCTAAACATCAATTATGC 57.865 37.500 0.00 0.00 39.39 3.14
7412 9061 8.292444 ACAGGCTAAACATCAATTATGCTTTA 57.708 30.769 0.00 0.00 39.39 1.85
7414 9063 7.649306 CAGGCTAAACATCAATTATGCTTTACC 59.351 37.037 0.00 0.00 39.39 2.85
7415 9064 7.341769 AGGCTAAACATCAATTATGCTTTACCA 59.658 33.333 0.00 0.00 39.39 3.25
7416 9065 8.143835 GGCTAAACATCAATTATGCTTTACCAT 58.856 33.333 0.00 0.00 39.39 3.55
7417 9066 9.185192 GCTAAACATCAATTATGCTTTACCATC 57.815 33.333 0.00 0.00 39.39 3.51
7427 9108 9.646522 AATTATGCTTTACCATCAGTTTAGGAT 57.353 29.630 0.00 0.00 0.00 3.24
7451 9132 4.227512 TCGCATCCAAATGTGATAATGC 57.772 40.909 7.44 7.44 45.21 3.56
7456 9137 4.880886 TCCAAATGTGATAATGCGTCAG 57.119 40.909 0.00 0.00 0.00 3.51
7461 9142 6.203530 CCAAATGTGATAATGCGTCAGTCTAT 59.796 38.462 0.00 0.00 0.00 1.98
7462 9143 7.384932 CCAAATGTGATAATGCGTCAGTCTATA 59.615 37.037 0.00 0.00 0.00 1.31
7500 9203 2.835027 GGTCAAGACCGAAGAAACTGT 58.165 47.619 3.08 0.00 42.29 3.55
7514 9217 6.074729 CGAAGAAACTGTAATACACACGACAA 60.075 38.462 0.00 0.00 32.33 3.18
7531 9234 8.279800 CACACGACAAACAAACATCTCTAATAA 58.720 33.333 0.00 0.00 0.00 1.40
7550 9253 6.992063 AATAAGAGTGGTTGTATCTTGCAG 57.008 37.500 0.00 0.00 35.09 4.41
7551 9254 4.623932 AAGAGTGGTTGTATCTTGCAGA 57.376 40.909 0.00 0.00 32.19 4.26
7552 9255 3.931578 AGAGTGGTTGTATCTTGCAGAC 58.068 45.455 0.00 0.00 0.00 3.51
7553 9256 3.324846 AGAGTGGTTGTATCTTGCAGACA 59.675 43.478 0.00 0.00 0.00 3.41
7554 9257 4.065088 GAGTGGTTGTATCTTGCAGACAA 58.935 43.478 0.00 0.00 0.00 3.18
7592 9300 1.287425 GGTCTAAAGCGGGAATCGTG 58.713 55.000 0.00 0.00 41.72 4.35
7605 9313 3.119245 GGGAATCGTGCAGTAGTGTAAGA 60.119 47.826 6.73 6.73 31.90 2.10
7606 9314 4.106197 GGAATCGTGCAGTAGTGTAAGAG 58.894 47.826 9.77 0.00 30.96 2.85
7607 9315 2.631418 TCGTGCAGTAGTGTAAGAGC 57.369 50.000 0.38 0.00 0.00 4.09
7608 9316 1.883926 TCGTGCAGTAGTGTAAGAGCA 59.116 47.619 0.38 0.00 0.00 4.26
7609 9317 2.492088 TCGTGCAGTAGTGTAAGAGCAT 59.508 45.455 0.38 0.00 34.24 3.79
7610 9318 2.854777 CGTGCAGTAGTGTAAGAGCATC 59.145 50.000 0.00 0.00 34.24 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 164 0.545548 GGAGGAGTGGGAAGAGGTGT 60.546 60.000 0.00 0.00 0.00 4.16
152 166 0.252467 CTGGAGGAGTGGGAAGAGGT 60.252 60.000 0.00 0.00 0.00 3.85
202 216 4.363990 CGTCTCTGCTGCGTGGGT 62.364 66.667 0.00 0.00 0.00 4.51
247 261 0.374758 CCCTTGTTGATGACGATGCG 59.625 55.000 0.00 0.00 0.00 4.73
292 307 1.443194 GTTTGACGTAGCGCGGAGA 60.443 57.895 8.83 0.00 46.52 3.71
369 386 1.088340 CGTCGTCGAGCTCCTCCTTA 61.088 60.000 8.47 0.00 39.71 2.69
489 513 4.719106 ACGACGACGCCTCCCTCT 62.719 66.667 7.30 0.00 43.96 3.69
584 610 0.969894 CTTCTCCTCCTTCACACGGT 59.030 55.000 0.00 0.00 0.00 4.83
588 614 1.203013 TCGTCCTTCTCCTCCTTCACA 60.203 52.381 0.00 0.00 0.00 3.58
737 774 0.515127 CGGCGAAACAGTGCATTACA 59.485 50.000 0.00 0.00 0.00 2.41
759 797 0.712380 ATCAGCCTGGGGGACAAATT 59.288 50.000 0.00 0.00 33.58 1.82
769 807 0.734889 CGGCAGTAAAATCAGCCTGG 59.265 55.000 0.00 0.00 44.85 4.45
770 808 0.734889 CCGGCAGTAAAATCAGCCTG 59.265 55.000 0.00 0.00 44.85 4.85
771 809 0.328258 ACCGGCAGTAAAATCAGCCT 59.672 50.000 0.00 0.00 44.85 4.58
772 810 0.733150 GACCGGCAGTAAAATCAGCC 59.267 55.000 0.00 0.00 43.61 4.85
773 811 0.733150 GGACCGGCAGTAAAATCAGC 59.267 55.000 0.00 0.00 0.00 4.26
774 812 1.006832 CGGACCGGCAGTAAAATCAG 58.993 55.000 5.81 0.00 0.00 2.90
775 813 1.022451 GCGGACCGGCAGTAAAATCA 61.022 55.000 17.22 0.00 0.00 2.57
776 814 1.719709 GCGGACCGGCAGTAAAATC 59.280 57.895 17.22 0.00 0.00 2.17
777 815 3.899395 GCGGACCGGCAGTAAAAT 58.101 55.556 17.22 0.00 0.00 1.82
796 834 0.312416 TTGAAAAATCGCCGTGTGGG 59.688 50.000 0.00 0.00 39.58 4.61
797 835 1.685302 CTTGAAAAATCGCCGTGTGG 58.315 50.000 0.00 0.00 38.77 4.17
798 836 1.052287 GCTTGAAAAATCGCCGTGTG 58.948 50.000 0.00 0.00 0.00 3.82
799 837 0.039527 GGCTTGAAAAATCGCCGTGT 60.040 50.000 0.00 0.00 32.22 4.49
800 838 2.724403 GGCTTGAAAAATCGCCGTG 58.276 52.632 0.00 0.00 32.22 4.94
803 841 0.388520 AAGCGGCTTGAAAAATCGCC 60.389 50.000 15.59 0.00 44.57 5.54
804 842 0.710017 CAAGCGGCTTGAAAAATCGC 59.290 50.000 33.39 3.58 43.42 4.58
805 843 1.339711 CCAAGCGGCTTGAAAAATCG 58.660 50.000 37.07 18.72 43.42 3.34
806 844 1.672737 CCCCAAGCGGCTTGAAAAATC 60.673 52.381 37.07 0.00 43.42 2.17
807 845 0.321346 CCCCAAGCGGCTTGAAAAAT 59.679 50.000 37.07 3.06 43.42 1.82
808 846 1.745264 CCCCAAGCGGCTTGAAAAA 59.255 52.632 37.07 0.00 43.42 1.94
809 847 2.206536 CCCCCAAGCGGCTTGAAAA 61.207 57.895 37.07 0.00 43.42 2.29
810 848 2.600173 CCCCCAAGCGGCTTGAAA 60.600 61.111 37.07 0.00 43.42 2.69
826 864 2.814913 AAATCTCCGACCGTTGGCCC 62.815 60.000 0.00 0.00 0.00 5.80
827 865 0.958876 AAAATCTCCGACCGTTGGCC 60.959 55.000 0.00 0.00 0.00 5.36
828 866 0.446616 GAAAATCTCCGACCGTTGGC 59.553 55.000 0.00 0.00 0.00 4.52
829 867 2.094762 AGAAAATCTCCGACCGTTGG 57.905 50.000 0.00 0.00 0.00 3.77
830 868 4.491676 TCTAAGAAAATCTCCGACCGTTG 58.508 43.478 0.00 0.00 0.00 4.10
831 869 4.220163 ACTCTAAGAAAATCTCCGACCGTT 59.780 41.667 0.00 0.00 0.00 4.44
832 870 3.762823 ACTCTAAGAAAATCTCCGACCGT 59.237 43.478 0.00 0.00 0.00 4.83
833 871 4.106197 CACTCTAAGAAAATCTCCGACCG 58.894 47.826 0.00 0.00 0.00 4.79
834 872 4.434520 CCACTCTAAGAAAATCTCCGACC 58.565 47.826 0.00 0.00 0.00 4.79
835 873 3.866327 GCCACTCTAAGAAAATCTCCGAC 59.134 47.826 0.00 0.00 0.00 4.79
836 874 3.513912 TGCCACTCTAAGAAAATCTCCGA 59.486 43.478 0.00 0.00 0.00 4.55
837 875 3.861840 TGCCACTCTAAGAAAATCTCCG 58.138 45.455 0.00 0.00 0.00 4.63
838 876 7.275920 TCTTATGCCACTCTAAGAAAATCTCC 58.724 38.462 0.00 0.00 32.47 3.71
839 877 8.723942 TTCTTATGCCACTCTAAGAAAATCTC 57.276 34.615 3.04 0.00 39.68 2.75
844 882 9.912634 CAAATTTTCTTATGCCACTCTAAGAAA 57.087 29.630 11.47 11.47 45.36 2.52
845 883 8.522830 CCAAATTTTCTTATGCCACTCTAAGAA 58.477 33.333 0.00 0.00 40.44 2.52
846 884 7.888021 TCCAAATTTTCTTATGCCACTCTAAGA 59.112 33.333 0.00 0.00 33.32 2.10
847 885 8.055279 TCCAAATTTTCTTATGCCACTCTAAG 57.945 34.615 0.00 0.00 0.00 2.18
848 886 7.888021 TCTCCAAATTTTCTTATGCCACTCTAA 59.112 33.333 0.00 0.00 0.00 2.10
849 887 7.402054 TCTCCAAATTTTCTTATGCCACTCTA 58.598 34.615 0.00 0.00 0.00 2.43
880 919 6.406065 GGTTTTTGTTTTTGCCACTCTAGGTA 60.406 38.462 0.00 0.00 0.00 3.08
916 955 6.215636 GGGCCAGGAATTATTAGGAGAGATAA 59.784 42.308 4.39 0.00 0.00 1.75
917 956 5.726793 GGGCCAGGAATTATTAGGAGAGATA 59.273 44.000 4.39 0.00 0.00 1.98
919 958 3.910627 GGGCCAGGAATTATTAGGAGAGA 59.089 47.826 4.39 0.00 0.00 3.10
920 959 3.913163 AGGGCCAGGAATTATTAGGAGAG 59.087 47.826 6.18 0.00 0.00 3.20
974 1013 2.284405 TTCGTCCCCTGTCCCCTC 60.284 66.667 0.00 0.00 0.00 4.30
975 1014 2.284699 CTTCGTCCCCTGTCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
976 1015 4.097361 GCTTCGTCCCCTGTCCCC 62.097 72.222 0.00 0.00 0.00 4.81
977 1016 2.198304 ATTGCTTCGTCCCCTGTCCC 62.198 60.000 0.00 0.00 0.00 4.46
978 1017 0.322546 AATTGCTTCGTCCCCTGTCC 60.323 55.000 0.00 0.00 0.00 4.02
979 1018 1.468914 GAAATTGCTTCGTCCCCTGTC 59.531 52.381 0.00 0.00 0.00 3.51
980 1019 1.202879 TGAAATTGCTTCGTCCCCTGT 60.203 47.619 0.00 0.00 36.78 4.00
981 1020 1.533625 TGAAATTGCTTCGTCCCCTG 58.466 50.000 0.00 0.00 36.78 4.45
1302 1341 1.226746 GCGCGGAATATTTGCTAGGT 58.773 50.000 8.83 0.00 0.00 3.08
1322 1361 1.831652 AAGCGGTCAGAAGTGGGGAG 61.832 60.000 0.00 0.00 0.00 4.30
1343 1382 2.042831 GCAGCTACCACAGGCCAAG 61.043 63.158 5.01 0.00 0.00 3.61
1344 1383 2.034066 GCAGCTACCACAGGCCAA 59.966 61.111 5.01 0.00 0.00 4.52
1349 1388 0.610174 TGAAGGAGCAGCTACCACAG 59.390 55.000 0.00 0.00 0.00 3.66
1398 1437 3.897141 TCGACCAGCCATACATAAACA 57.103 42.857 0.00 0.00 0.00 2.83
1403 1442 2.575532 CCATTTCGACCAGCCATACAT 58.424 47.619 0.00 0.00 0.00 2.29
1411 1450 2.033801 GCAATCATCCCATTTCGACCAG 59.966 50.000 0.00 0.00 0.00 4.00
1454 1493 1.652947 ACCCCACTAACGATTCACCT 58.347 50.000 0.00 0.00 0.00 4.00
1532 1571 6.718454 CAGTATGTCTGACAGAAAAGAAGG 57.282 41.667 16.46 0.00 46.27 3.46
1553 1592 7.310664 AGTTCATTGCTATCAAACATGAACAG 58.689 34.615 18.96 0.00 44.31 3.16
1560 1602 7.537715 CCATGTTAGTTCATTGCTATCAAACA 58.462 34.615 0.00 0.00 35.56 2.83
1570 1612 4.155826 TCGAAAGGCCATGTTAGTTCATTG 59.844 41.667 5.01 0.00 0.00 2.82
1572 1614 3.689649 GTCGAAAGGCCATGTTAGTTCAT 59.310 43.478 5.01 0.00 0.00 2.57
1593 1635 2.978156 TTTGAGCCCAAATCCTGAGT 57.022 45.000 0.00 0.00 37.36 3.41
1691 1733 5.963865 ACATTAAATGGGTCCTGCCTAAAAT 59.036 36.000 0.00 0.00 37.43 1.82
1717 1769 5.835819 TGGAACTCATACAAAATTCCCAACA 59.164 36.000 0.00 0.00 38.46 3.33
1721 1773 4.770010 TGGTGGAACTCATACAAAATTCCC 59.230 41.667 0.00 0.00 38.46 3.97
1731 1783 5.762179 AGTTGATTCTGGTGGAACTCATA 57.238 39.130 0.00 0.00 36.70 2.15
1736 1788 7.433680 ACAAATTTAGTTGATTCTGGTGGAAC 58.566 34.615 0.00 0.00 32.87 3.62
1832 1886 7.375106 ACTCAAGTTGCATCTCATTCTAAAG 57.625 36.000 0.00 0.00 0.00 1.85
1890 1944 2.693074 GAGCCTGGAAAAGTTTTGGTCA 59.307 45.455 5.36 1.06 0.00 4.02
1908 1962 1.941325 AGCAAAGGCACTATACGAGC 58.059 50.000 0.00 0.00 44.61 5.03
1912 1966 4.217550 TGGAACAAAGCAAAGGCACTATAC 59.782 41.667 0.00 0.00 37.91 1.47
1966 2021 8.432013 TCAAGAGCAGATTAAATTATAGCAGGA 58.568 33.333 0.00 0.00 0.00 3.86
2050 2107 0.468226 CCCCTCCAAACGCTATAGCA 59.532 55.000 23.99 2.84 42.21 3.49
2075 2132 2.822827 CGCTAAATTGGCGCTATAACG 58.177 47.619 11.28 0.00 45.83 3.18
2128 2202 3.826157 CCTCACCAAAGTTCTAAATGGCA 59.174 43.478 0.00 0.00 36.37 4.92
2129 2203 4.079253 TCCTCACCAAAGTTCTAAATGGC 58.921 43.478 0.00 0.00 36.37 4.40
2137 2211 2.030805 GCACATGTCCTCACCAAAGTTC 60.031 50.000 0.00 0.00 0.00 3.01
2154 2228 4.142945 GCAACATGTTCTTTGTTTTGCACA 60.143 37.500 8.48 0.00 35.18 4.57
2162 2236 3.548014 GCTACACGCAACATGTTCTTTGT 60.548 43.478 8.48 13.35 38.92 2.83
2198 2272 0.031917 TCCCCATCCAAAGCATGCAT 60.032 50.000 21.98 4.57 0.00 3.96
2244 2318 0.751643 ATGTTATGCGTTGGCCCTCC 60.752 55.000 0.00 0.00 38.85 4.30
2245 2319 1.873591 CTATGTTATGCGTTGGCCCTC 59.126 52.381 0.00 0.00 38.85 4.30
2356 2430 4.360964 TGGCATGCCGCAAACAGC 62.361 61.111 30.87 5.02 45.17 4.40
2373 2449 6.460953 CCAAGCAATGTTGTACTAAAGGTTGT 60.461 38.462 0.00 0.00 33.00 3.32
2442 2518 2.682856 TGCAAGACAGAAACACCTCAAC 59.317 45.455 0.00 0.00 0.00 3.18
2503 2579 2.817844 GTTCTGAGGTGCCCGTATTTTT 59.182 45.455 0.00 0.00 0.00 1.94
2511 2587 1.692411 AACAAAGTTCTGAGGTGCCC 58.308 50.000 0.00 0.00 0.00 5.36
2533 2609 5.883673 GGGACTGTATGGCTTATTGTTTGTA 59.116 40.000 0.00 0.00 0.00 2.41
2589 2665 7.397221 AGAATGGAGATAAGAACACAACATGA 58.603 34.615 0.00 0.00 0.00 3.07
2727 2803 1.204146 GTTAGGTCAGGATCCCAGCA 58.796 55.000 8.55 0.00 0.00 4.41
2813 2890 7.402650 CCTTATCTCTTGGATCCTGGATATCTT 59.597 40.741 14.23 0.00 35.98 2.40
2827 2904 8.159447 TGATATGAATGGTTCCTTATCTCTTGG 58.841 37.037 0.00 0.00 30.86 3.61
2841 2918 7.470981 GCCAGACATGAAATTGATATGAATGGT 60.471 37.037 0.00 0.00 35.44 3.55
3033 3111 2.290093 GCAGCTGATTCCTGAATACAGC 59.710 50.000 20.43 22.65 43.74 4.40
3070 3148 4.823157 TGCTAGCATTAACTCCGTTGTAA 58.177 39.130 14.93 0.00 0.00 2.41
3160 3240 9.209175 AGGATCGAACTTTTGCATAATATAGTC 57.791 33.333 0.00 0.00 0.00 2.59
3362 3605 6.225981 TCTTCAGCAGAGTCATAATTAGCA 57.774 37.500 0.00 0.00 0.00 3.49
3416 3659 8.150945 TGAATTATAGAACTATTCAGGGTCTGC 58.849 37.037 0.00 0.00 34.36 4.26
3442 3685 6.040842 ACCAACTTTGCTCATTAGTGTGAAAT 59.959 34.615 0.00 0.00 0.00 2.17
3500 3749 5.130145 AGTGACCCAAATTGGAAACATCAAA 59.870 36.000 14.62 0.00 40.96 2.69
3548 3797 1.818060 GCTTATGTGGCATGAACACCA 59.182 47.619 15.56 2.51 38.05 4.17
3598 3847 7.970061 TGACAGTTGAGCAAATAAATTAGATGC 59.030 33.333 5.09 5.09 37.28 3.91
3784 4033 2.041620 AGCACCCATTTTTCCTAGCTCA 59.958 45.455 0.00 0.00 0.00 4.26
3785 4034 2.424956 CAGCACCCATTTTTCCTAGCTC 59.575 50.000 0.00 0.00 0.00 4.09
3787 4036 2.164422 GTCAGCACCCATTTTTCCTAGC 59.836 50.000 0.00 0.00 0.00 3.42
3863 4112 3.683281 GCCGGTTCAGTCCATGGTATTTA 60.683 47.826 12.58 0.00 0.00 1.40
3913 4167 7.440198 TGTGCACATCTTTTCATTAATTGGAA 58.560 30.769 17.42 0.00 0.00 3.53
3948 4202 4.503714 TCAAGTTTATTAGCTGGGGGAG 57.496 45.455 0.00 0.00 0.00 4.30
3949 4203 4.538490 TCTTCAAGTTTATTAGCTGGGGGA 59.462 41.667 0.00 0.00 0.00 4.81
4067 4340 4.577283 GTGCAAAGTTTGTAGTTCTACCCA 59.423 41.667 16.70 0.00 0.00 4.51
4089 4362 8.778358 GCAATAATCGAATAATGAGAGGAAAGT 58.222 33.333 0.00 0.00 0.00 2.66
4239 4536 7.396540 AGATAAAATACCTTGTTTGGCTCTG 57.603 36.000 0.00 0.00 0.00 3.35
4338 4635 1.813862 GCCCGGAGTATTAGCATGCAA 60.814 52.381 21.98 12.49 0.00 4.08
4353 4650 4.035675 GTGAAGAATATCAGAAAAGCCCGG 59.964 45.833 0.00 0.00 0.00 5.73
4354 4651 4.635765 TGTGAAGAATATCAGAAAAGCCCG 59.364 41.667 0.00 0.00 0.00 6.13
4473 4840 2.656947 ACTTTTCCTGCTGCCAACTA 57.343 45.000 0.00 0.00 0.00 2.24
4476 4843 2.622942 CAAGTACTTTTCCTGCTGCCAA 59.377 45.455 5.07 0.00 0.00 4.52
4557 4927 0.109272 GCTTTAAGGGCTTTCGGTGC 60.109 55.000 0.00 0.00 0.00 5.01
4598 4970 1.270252 CCCACACATTCCCAGCAAAAC 60.270 52.381 0.00 0.00 0.00 2.43
4642 5014 2.165437 TGCCAAATTAAGATGCCCGAAC 59.835 45.455 0.00 0.00 0.00 3.95
4645 5017 3.317711 TGTATGCCAAATTAAGATGCCCG 59.682 43.478 0.00 0.00 0.00 6.13
4828 6144 7.672660 TGTAAGAAGGTACACTGAGGATTTCTA 59.327 37.037 0.00 0.00 0.00 2.10
4951 6272 7.855904 GCATTTTTAGGTGGTAATCTTATCACG 59.144 37.037 7.14 0.00 43.91 4.35
5012 6333 2.691011 GAGCGGGTTATCTTGAGACTCT 59.309 50.000 3.68 0.00 0.00 3.24
5038 6359 1.228429 GTGGGCTGTTTGGCAGGTA 60.228 57.895 0.00 0.00 45.14 3.08
5164 6485 3.486905 AACAGGAGCAGCAGCAGCA 62.487 57.895 12.92 0.00 45.49 4.41
5196 6523 2.607750 GGTCACAGAGGGAGGCCA 60.608 66.667 5.01 0.00 0.00 5.36
5296 6623 3.035942 CAACGCACAGTGAAAACTAAGC 58.964 45.455 4.15 0.00 0.00 3.09
5573 6950 2.104111 TGCTGGGGTATGGTAATTCGAG 59.896 50.000 0.00 0.00 0.00 4.04
5628 7005 8.471302 TTTATATAGGCCCTGTATAAACCCAT 57.529 34.615 21.96 0.00 36.13 4.00
5647 7024 3.369471 CGGGATCATGGACGCCTTTATAT 60.369 47.826 0.00 0.00 0.00 0.86
5882 7437 5.163468 CCGAGGGGATCTAGAACATGATATG 60.163 48.000 0.00 0.00 34.06 1.78
5959 7514 2.636778 TTTGTCGACGCCTGACAGCA 62.637 55.000 11.62 0.00 46.17 4.41
5965 7520 2.540101 GAGGATAATTTGTCGACGCCTG 59.460 50.000 11.62 0.00 0.00 4.85
5973 7528 9.817365 CATGATTATTGTCGAGGATAATTTGTC 57.183 33.333 12.14 4.45 30.68 3.18
6034 7590 4.319766 GGAAGCTACACAAATGTCACACAG 60.320 45.833 0.00 0.00 40.48 3.66
6136 7696 1.229428 ACACCTGTGACTCGCAAATG 58.771 50.000 3.94 0.00 0.00 2.32
6165 7745 4.385825 CAAGGTCCTGCAGTACAAACTTA 58.614 43.478 13.81 0.00 31.97 2.24
6191 7771 0.031616 ACCCTGTTTGCTTTCCCCAA 60.032 50.000 0.00 0.00 0.00 4.12
6348 7928 8.674263 TCACAAGAACCATGCAATTTTTAATT 57.326 26.923 0.00 0.00 0.00 1.40
6482 8086 9.503427 GTAGATGAGCAAATTAATAAACACACC 57.497 33.333 0.00 0.00 0.00 4.16
6494 8098 4.472833 AGGGAGACAGTAGATGAGCAAATT 59.527 41.667 0.00 0.00 0.00 1.82
6496 8100 3.445008 AGGGAGACAGTAGATGAGCAAA 58.555 45.455 0.00 0.00 0.00 3.68
6612 8216 6.426937 TGACCAGACTTAGTTTCTATGTTTGC 59.573 38.462 0.00 0.00 0.00 3.68
6629 8250 3.420893 TGAAACCCAATCATGACCAGAC 58.579 45.455 0.00 0.00 0.00 3.51
6637 8258 8.042515 CCAGTTTGATTTATGAAACCCAATCAT 58.957 33.333 1.92 0.00 40.49 2.45
6638 8259 7.016072 ACCAGTTTGATTTATGAAACCCAATCA 59.984 33.333 1.92 0.00 34.98 2.57
6639 8260 7.386059 ACCAGTTTGATTTATGAAACCCAATC 58.614 34.615 1.92 0.00 34.98 2.67
6642 8263 5.048364 CGACCAGTTTGATTTATGAAACCCA 60.048 40.000 1.92 0.00 34.98 4.51
6645 8270 5.399013 CCCGACCAGTTTGATTTATGAAAC 58.601 41.667 0.00 0.00 34.70 2.78
6756 8389 1.533625 TTCCATCAAGCTGGTTTCGG 58.466 50.000 0.00 0.00 37.57 4.30
6834 8467 1.334689 GCGCACCACCTTTTAGTGTTC 60.335 52.381 0.30 0.00 35.93 3.18
6835 8468 0.666374 GCGCACCACCTTTTAGTGTT 59.334 50.000 0.30 0.00 35.93 3.32
6853 8486 0.179215 CACAAAGACTCGGCAATCGC 60.179 55.000 0.00 0.00 39.05 4.58
6875 8508 5.691305 GCATTACAAAAGTGTGAAATCAGCA 59.309 36.000 0.00 0.00 38.82 4.41
6925 8558 5.412594 ACGAACATAAAAGCATGTCATCACT 59.587 36.000 0.00 0.00 38.19 3.41
6959 8597 3.373439 AGACGAGGCTAAACTGTAGTACG 59.627 47.826 0.00 0.00 0.00 3.67
6973 8611 2.688507 TCTCATTTTGACAGACGAGGC 58.311 47.619 0.00 0.00 0.00 4.70
6977 8615 4.687948 ACACTCATCTCATTTTGACAGACG 59.312 41.667 0.00 0.00 0.00 4.18
7013 8651 0.396278 GAGGGCAAAATAGGGCAGCT 60.396 55.000 0.00 0.00 0.00 4.24
7060 8700 6.040842 ACTGCATTGAGTAAAAACCATTCTGT 59.959 34.615 0.00 0.00 0.00 3.41
7071 8711 4.460263 ACTGTTGGACTGCATTGAGTAAA 58.540 39.130 0.00 0.00 0.00 2.01
7072 8712 4.085357 ACTGTTGGACTGCATTGAGTAA 57.915 40.909 0.00 0.00 0.00 2.24
7073 8713 3.769739 ACTGTTGGACTGCATTGAGTA 57.230 42.857 0.00 0.00 0.00 2.59
7142 8782 5.859205 TGTCTCATGATACTAGCACATGT 57.141 39.130 11.98 0.00 41.14 3.21
7160 8809 3.521937 TCCCCGTTCCATAATTCTTGTCT 59.478 43.478 0.00 0.00 0.00 3.41
7190 8839 0.179065 GGAACGGAGGGGGTAAATCG 60.179 60.000 0.00 0.00 0.00 3.34
7198 8847 1.758862 ACGTATTTAGGAACGGAGGGG 59.241 52.381 0.00 0.00 43.25 4.79
7290 8939 8.826710 CGGAGCAAAATAAGTGAATATGAACTA 58.173 33.333 0.00 0.00 0.00 2.24
7291 8940 7.336931 ACGGAGCAAAATAAGTGAATATGAACT 59.663 33.333 0.00 0.00 0.00 3.01
7292 8941 7.472543 ACGGAGCAAAATAAGTGAATATGAAC 58.527 34.615 0.00 0.00 0.00 3.18
7293 8942 7.624360 ACGGAGCAAAATAAGTGAATATGAA 57.376 32.000 0.00 0.00 0.00 2.57
7294 8943 8.773645 CATACGGAGCAAAATAAGTGAATATGA 58.226 33.333 0.00 0.00 0.00 2.15
7295 8944 8.559536 ACATACGGAGCAAAATAAGTGAATATG 58.440 33.333 0.00 0.00 0.00 1.78
7296 8945 8.677148 ACATACGGAGCAAAATAAGTGAATAT 57.323 30.769 0.00 0.00 0.00 1.28
7297 8946 9.256477 CTACATACGGAGCAAAATAAGTGAATA 57.744 33.333 0.00 0.00 0.00 1.75
7298 8947 7.769044 ACTACATACGGAGCAAAATAAGTGAAT 59.231 33.333 0.00 0.00 0.00 2.57
7299 8948 7.101054 ACTACATACGGAGCAAAATAAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
7300 8949 6.636705 ACTACATACGGAGCAAAATAAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
7301 8950 6.018994 GGACTACATACGGAGCAAAATAAGTG 60.019 42.308 0.00 0.00 0.00 3.16
7302 8951 6.047231 GGACTACATACGGAGCAAAATAAGT 58.953 40.000 0.00 0.00 0.00 2.24
7303 8952 6.046593 TGGACTACATACGGAGCAAAATAAG 58.953 40.000 0.00 0.00 0.00 1.73
7304 8953 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
7305 8954 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
7306 8955 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
7307 8956 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
7308 8957 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
7309 8958 5.801531 AATATGGACTACATACGGAGCAA 57.198 39.130 0.00 0.00 44.41 3.91
7310 8959 6.904463 TTAATATGGACTACATACGGAGCA 57.096 37.500 0.00 0.00 44.41 4.26
7311 8960 8.773404 ATTTTAATATGGACTACATACGGAGC 57.227 34.615 0.00 0.00 44.41 4.70
7342 8991 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
7343 8992 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
7344 8993 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
7345 8994 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
7346 8995 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
7347 8996 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
7348 8997 8.858094 ACTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
7349 8998 8.773033 ACTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
7351 9000 8.953223 ATACTACTCCCTCCGTTTCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
7353 9002 8.953223 ATATACTACTCCCTCCGTTTCTAAAT 57.047 34.615 0.00 0.00 0.00 1.40
7356 9005 9.458727 CAATATATACTACTCCCTCCGTTTCTA 57.541 37.037 0.00 0.00 0.00 2.10
7357 9006 7.093858 GCAATATATACTACTCCCTCCGTTTCT 60.094 40.741 0.00 0.00 0.00 2.52
7358 9007 7.034397 GCAATATATACTACTCCCTCCGTTTC 58.966 42.308 0.00 0.00 0.00 2.78
7359 9008 6.724905 AGCAATATATACTACTCCCTCCGTTT 59.275 38.462 0.00 0.00 0.00 3.60
7360 9009 6.254522 AGCAATATATACTACTCCCTCCGTT 58.745 40.000 0.00 0.00 0.00 4.44
7361 9010 5.828871 AGCAATATATACTACTCCCTCCGT 58.171 41.667 0.00 0.00 0.00 4.69
7362 9011 6.377429 TCAAGCAATATATACTACTCCCTCCG 59.623 42.308 0.00 0.00 0.00 4.63
7363 9012 7.178628 TGTCAAGCAATATATACTACTCCCTCC 59.821 40.741 0.00 0.00 0.00 4.30
7364 9013 8.123639 TGTCAAGCAATATATACTACTCCCTC 57.876 38.462 0.00 0.00 0.00 4.30
7365 9014 7.179338 CCTGTCAAGCAATATATACTACTCCCT 59.821 40.741 0.00 0.00 0.00 4.20
7366 9015 7.324178 CCTGTCAAGCAATATATACTACTCCC 58.676 42.308 0.00 0.00 0.00 4.30
7367 9016 6.814146 GCCTGTCAAGCAATATATACTACTCC 59.186 42.308 0.00 0.00 0.00 3.85
7368 9017 7.607250 AGCCTGTCAAGCAATATATACTACTC 58.393 38.462 0.00 0.00 0.00 2.59
7369 9018 7.546250 AGCCTGTCAAGCAATATATACTACT 57.454 36.000 0.00 0.00 0.00 2.57
7370 9019 9.706691 TTTAGCCTGTCAAGCAATATATACTAC 57.293 33.333 0.00 0.00 0.00 2.73
7371 9020 9.706691 GTTTAGCCTGTCAAGCAATATATACTA 57.293 33.333 0.00 0.00 0.00 1.82
7372 9021 8.210946 TGTTTAGCCTGTCAAGCAATATATACT 58.789 33.333 0.00 0.00 0.00 2.12
7391 9040 9.185192 GATGGTAAAGCATAATTGATGTTTAGC 57.815 33.333 0.00 6.68 37.95 3.09
7414 9063 2.905075 TGCGACCATCCTAAACTGATG 58.095 47.619 0.00 0.00 39.44 3.07
7415 9064 3.733337 GATGCGACCATCCTAAACTGAT 58.267 45.455 0.00 0.00 41.62 2.90
7416 9065 3.179443 GATGCGACCATCCTAAACTGA 57.821 47.619 0.00 0.00 41.62 3.41
7427 9108 2.127271 ATCACATTTGGATGCGACCA 57.873 45.000 0.00 0.00 36.72 4.02
7429 9110 3.976942 GCATTATCACATTTGGATGCGAC 59.023 43.478 0.00 0.00 36.72 5.19
7477 9169 2.169769 AGTTTCTTCGGTCTTGACCACA 59.830 45.455 18.51 2.88 0.00 4.17
7478 9170 2.544267 CAGTTTCTTCGGTCTTGACCAC 59.456 50.000 18.51 8.65 0.00 4.16
7481 9173 6.643770 TGTATTACAGTTTCTTCGGTCTTGAC 59.356 38.462 0.00 0.00 0.00 3.18
7483 9175 6.422701 TGTGTATTACAGTTTCTTCGGTCTTG 59.577 38.462 0.00 0.00 33.42 3.02
7489 9192 5.400188 TGTCGTGTGTATTACAGTTTCTTCG 59.600 40.000 0.00 0.00 40.69 3.79
7500 9203 7.439955 AGAGATGTTTGTTTGTCGTGTGTATTA 59.560 33.333 0.00 0.00 0.00 0.98
7560 9263 1.913778 TTAGACCACTCGGCTACACA 58.086 50.000 0.00 0.00 34.57 3.72
7592 9300 3.131223 TGGAGATGCTCTTACACTACTGC 59.869 47.826 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.