Multiple sequence alignment - TraesCS1A01G229600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G229600 | chr1A | 100.000 | 5100 | 0 | 0 | 703 | 5802 | 402236632 | 402231533 | 0.000000e+00 | 9419.0 |
1 | TraesCS1A01G229600 | chr1A | 100.000 | 463 | 0 | 0 | 1 | 463 | 402237334 | 402236872 | 0.000000e+00 | 856.0 |
2 | TraesCS1A01G229600 | chr1D | 95.531 | 3312 | 111 | 11 | 1960 | 5267 | 320722456 | 320725734 | 0.000000e+00 | 5262.0 |
3 | TraesCS1A01G229600 | chr1D | 91.953 | 1019 | 60 | 9 | 713 | 1723 | 320721452 | 320722456 | 0.000000e+00 | 1408.0 |
4 | TraesCS1A01G229600 | chr1D | 86.774 | 499 | 21 | 19 | 3 | 463 | 320720657 | 320721148 | 1.110000e-141 | 514.0 |
5 | TraesCS1A01G229600 | chr1D | 94.656 | 131 | 6 | 1 | 5671 | 5800 | 320727530 | 320727660 | 9.860000e-48 | 202.0 |
6 | TraesCS1A01G229600 | chr1B | 96.257 | 2084 | 70 | 5 | 1960 | 4040 | 433637798 | 433639876 | 0.000000e+00 | 3410.0 |
7 | TraesCS1A01G229600 | chr1B | 95.848 | 1156 | 36 | 4 | 4137 | 5291 | 433639911 | 433641055 | 0.000000e+00 | 1858.0 |
8 | TraesCS1A01G229600 | chr1B | 93.495 | 1030 | 55 | 7 | 703 | 1725 | 433636778 | 433637802 | 0.000000e+00 | 1520.0 |
9 | TraesCS1A01G229600 | chr1B | 89.905 | 317 | 9 | 8 | 159 | 460 | 433635965 | 433636273 | 2.540000e-103 | 387.0 |
10 | TraesCS1A01G229600 | chr1B | 85.380 | 171 | 8 | 7 | 3 | 172 | 433628793 | 433628947 | 1.670000e-35 | 161.0 |
11 | TraesCS1A01G229600 | chr1B | 97.826 | 46 | 1 | 0 | 4056 | 4101 | 433639870 | 433639915 | 4.820000e-11 | 80.5 |
12 | TraesCS1A01G229600 | chr6B | 87.266 | 267 | 23 | 8 | 1718 | 1975 | 228975436 | 228975172 | 1.580000e-75 | 294.0 |
13 | TraesCS1A01G229600 | chr6A | 88.189 | 254 | 20 | 7 | 1727 | 1975 | 169515003 | 169514755 | 1.580000e-75 | 294.0 |
14 | TraesCS1A01G229600 | chr7A | 89.868 | 227 | 17 | 4 | 1729 | 1949 | 490271187 | 490270961 | 2.650000e-73 | 287.0 |
15 | TraesCS1A01G229600 | chr7A | 84.615 | 104 | 15 | 1 | 2912 | 3015 | 21350237 | 21350135 | 1.030000e-17 | 102.0 |
16 | TraesCS1A01G229600 | chr2B | 88.066 | 243 | 26 | 3 | 1725 | 1967 | 667259427 | 667259188 | 9.520000e-73 | 285.0 |
17 | TraesCS1A01G229600 | chr2B | 86.957 | 230 | 29 | 1 | 1731 | 1959 | 492706743 | 492706514 | 2.070000e-64 | 257.0 |
18 | TraesCS1A01G229600 | chr2B | 84.066 | 182 | 11 | 9 | 2912 | 3091 | 471637483 | 471637318 | 6.020000e-35 | 159.0 |
19 | TraesCS1A01G229600 | chr2A | 88.412 | 233 | 23 | 4 | 1727 | 1957 | 715268166 | 715268396 | 1.590000e-70 | 278.0 |
20 | TraesCS1A01G229600 | chr2A | 84.615 | 182 | 17 | 8 | 2912 | 3093 | 672442044 | 672442214 | 2.780000e-38 | 171.0 |
21 | TraesCS1A01G229600 | chr2A | 85.455 | 110 | 11 | 4 | 2912 | 3019 | 632386882 | 632386988 | 6.150000e-20 | 110.0 |
22 | TraesCS1A01G229600 | chrUn | 88.261 | 230 | 22 | 3 | 1732 | 1960 | 49812522 | 49812297 | 2.660000e-68 | 270.0 |
23 | TraesCS1A01G229600 | chr4A | 88.261 | 230 | 22 | 3 | 1732 | 1960 | 642959924 | 642959699 | 2.660000e-68 | 270.0 |
24 | TraesCS1A01G229600 | chr4A | 84.360 | 211 | 19 | 7 | 2424 | 2631 | 178843376 | 178843177 | 1.650000e-45 | 195.0 |
25 | TraesCS1A01G229600 | chr5D | 86.325 | 234 | 28 | 4 | 1728 | 1958 | 380692103 | 380691871 | 9.650000e-63 | 252.0 |
26 | TraesCS1A01G229600 | chr7B | 84.358 | 179 | 16 | 3 | 2915 | 3093 | 610629007 | 610628841 | 1.290000e-36 | 165.0 |
27 | TraesCS1A01G229600 | chr3B | 81.111 | 180 | 23 | 8 | 2912 | 3091 | 51816595 | 51816763 | 3.650000e-27 | 134.0 |
28 | TraesCS1A01G229600 | chr4D | 84.404 | 109 | 12 | 4 | 2913 | 3019 | 214335550 | 214335655 | 1.030000e-17 | 102.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G229600 | chr1A | 402231533 | 402237334 | 5801 | True | 5137.5 | 9419 | 100.0000 | 1 | 5802 | 2 | chr1A.!!$R1 | 5801 |
1 | TraesCS1A01G229600 | chr1D | 320720657 | 320727660 | 7003 | False | 1846.5 | 5262 | 92.2285 | 3 | 5800 | 4 | chr1D.!!$F1 | 5797 |
2 | TraesCS1A01G229600 | chr1B | 433635965 | 433641055 | 5090 | False | 1451.1 | 3410 | 94.6662 | 159 | 5291 | 5 | chr1B.!!$F2 | 5132 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
129 | 141 | 0.233848 | GCGTTTGTTCGTTCCATCGT | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 | F |
1884 | 2206 | 0.034477 | ACTAAAGTTGCCATCCCCGG | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 | F |
1932 | 2254 | 0.033366 | AGGGCGGAATTGTTTTGTGC | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 | F |
1942 | 2264 | 0.109551 | TGTTTTGTGCCACACGTGTG | 60.110 | 50.000 | 36.13 | 36.13 | 45.23 | 3.82 | F |
2815 | 3137 | 0.248498 | TGACTCGAGCGGAATTAGCG | 60.248 | 55.000 | 13.61 | 0.00 | 40.04 | 4.26 | F |
2893 | 3215 | 1.604604 | GGTGCAAACTACTGCTTGGA | 58.395 | 50.000 | 0.00 | 0.00 | 43.07 | 3.53 | F |
3060 | 3382 | 1.912763 | GCTGGTCCATTTTGGCCCA | 60.913 | 57.895 | 0.00 | 0.00 | 44.42 | 5.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1913 | 2235 | 0.033366 | GCACAAAACAATTCCGCCCT | 59.967 | 50.000 | 0.0 | 0.0 | 0.00 | 5.19 | R |
3746 | 4069 | 1.024271 | GTGTTGCACCTTCTTCTGCA | 58.976 | 50.000 | 0.0 | 0.0 | 41.68 | 4.41 | R |
3876 | 4199 | 7.162082 | ACTGTGGTTAAAATAGAGAAGACTGG | 58.838 | 38.462 | 0.0 | 0.0 | 0.00 | 4.00 | R |
4040 | 4384 | 5.481473 | ACCCAACAATGCTCAGAAAATATGT | 59.519 | 36.000 | 0.0 | 0.0 | 0.00 | 2.29 | R |
4738 | 5092 | 2.049526 | CGCGTGTCCACAGCTACA | 60.050 | 61.111 | 0.0 | 0.0 | 0.00 | 2.74 | R |
4780 | 5134 | 5.232463 | ACTCAATCGCTTCCGTACTTTTTA | 58.768 | 37.500 | 0.0 | 0.0 | 35.54 | 1.52 | R |
5097 | 5452 | 5.185635 | ACATGGCTTTACATACATTTGCACT | 59.814 | 36.000 | 0.0 | 0.0 | 0.00 | 4.40 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 9.450807 | GGATCCTAAAATAATTCGACACAAATG | 57.549 | 33.333 | 3.84 | 0.00 | 0.00 | 2.32 |
90 | 91 | 1.197721 | GCTTGTCATTTGTGGACGGAG | 59.802 | 52.381 | 0.00 | 0.00 | 38.10 | 4.63 |
112 | 113 | 2.202570 | GATTTGCTGCCTGCTGCG | 60.203 | 61.111 | 14.86 | 0.00 | 45.60 | 5.18 |
121 | 122 | 3.022287 | CCTGCTGCGTTTGTTCGT | 58.978 | 55.556 | 0.00 | 0.00 | 0.00 | 3.85 |
125 | 137 | 1.353804 | GCTGCGTTTGTTCGTTCCA | 59.646 | 52.632 | 0.00 | 0.00 | 0.00 | 3.53 |
129 | 141 | 0.233848 | GCGTTTGTTCGTTCCATCGT | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
130 | 142 | 1.456544 | GCGTTTGTTCGTTCCATCGTA | 59.543 | 47.619 | 0.00 | 0.00 | 0.00 | 3.43 |
134 | 146 | 3.646611 | TTGTTCGTTCCATCGTACTCA | 57.353 | 42.857 | 0.00 | 0.00 | 33.55 | 3.41 |
135 | 147 | 3.861276 | TGTTCGTTCCATCGTACTCAT | 57.139 | 42.857 | 0.00 | 0.00 | 33.55 | 2.90 |
138 | 150 | 1.202371 | TCGTTCCATCGTACTCATGCC | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
163 | 175 | 6.283694 | CCCAAGGGAAAGAAAAGAAAGAAAG | 58.716 | 40.000 | 0.00 | 0.00 | 37.50 | 2.62 |
193 | 205 | 0.826715 | ACCGGATCCAGTGTGATGAG | 59.173 | 55.000 | 9.46 | 0.00 | 0.00 | 2.90 |
194 | 206 | 0.826715 | CCGGATCCAGTGTGATGAGT | 59.173 | 55.000 | 13.41 | 0.00 | 0.00 | 3.41 |
195 | 207 | 1.202463 | CCGGATCCAGTGTGATGAGTC | 60.202 | 57.143 | 13.41 | 0.00 | 0.00 | 3.36 |
196 | 208 | 1.478105 | CGGATCCAGTGTGATGAGTCA | 59.522 | 52.381 | 13.41 | 0.00 | 0.00 | 3.41 |
197 | 209 | 2.102084 | CGGATCCAGTGTGATGAGTCAT | 59.898 | 50.000 | 13.41 | 4.98 | 36.60 | 3.06 |
198 | 210 | 3.464907 | GGATCCAGTGTGATGAGTCATG | 58.535 | 50.000 | 11.20 | 0.00 | 36.60 | 3.07 |
199 | 211 | 2.391616 | TCCAGTGTGATGAGTCATGC | 57.608 | 50.000 | 11.20 | 3.88 | 36.60 | 4.06 |
277 | 289 | 4.906618 | TCCGCTTGAATTTAGTTTCCTCT | 58.093 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
279 | 291 | 4.938226 | CCGCTTGAATTTAGTTTCCTCTCT | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
280 | 292 | 5.064071 | CCGCTTGAATTTAGTTTCCTCTCTC | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
281 | 293 | 5.872070 | CGCTTGAATTTAGTTTCCTCTCTCT | 59.128 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
851 | 1159 | 1.102222 | ACTAGTCCAGTCCCGCGATC | 61.102 | 60.000 | 8.23 | 0.00 | 28.33 | 3.69 |
853 | 1161 | 2.561467 | TAGTCCAGTCCCGCGATCCA | 62.561 | 60.000 | 8.23 | 0.00 | 0.00 | 3.41 |
934 | 1242 | 1.873270 | AATTTTTCGGGGAGGCGTGC | 61.873 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
975 | 1283 | 3.827898 | CCTCTGGTCTCCGCGGTC | 61.828 | 72.222 | 27.15 | 16.32 | 0.00 | 4.79 |
1003 | 1311 | 1.881591 | TTCTTGCTTTTTGGCCATGC | 58.118 | 45.000 | 6.09 | 9.97 | 0.00 | 4.06 |
1173 | 1481 | 3.044305 | GGTGACACGGCTGCTGAC | 61.044 | 66.667 | 16.72 | 2.26 | 0.00 | 3.51 |
1181 | 1489 | 0.322975 | ACGGCTGCTGACAATCTTCT | 59.677 | 50.000 | 16.72 | 0.00 | 0.00 | 2.85 |
1183 | 1491 | 1.377536 | GGCTGCTGACAATCTTCTCC | 58.622 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1239 | 1547 | 1.454663 | GAGCTCATTTGGGCCCTCC | 60.455 | 63.158 | 25.70 | 0.00 | 0.00 | 4.30 |
1248 | 1556 | 3.334054 | GGGCCCTCCTGCTCTGTT | 61.334 | 66.667 | 17.04 | 0.00 | 0.00 | 3.16 |
1323 | 1631 | 4.340617 | TCCTGGGTAATTTCAATGTGGAC | 58.659 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1346 | 1654 | 1.743996 | GCCGCTTCTCTTCCAAAGAT | 58.256 | 50.000 | 0.00 | 0.00 | 36.82 | 2.40 |
1395 | 1707 | 5.102313 | GCCCCTGTAAAAATTTCGATTCTG | 58.898 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1406 | 1718 | 7.615582 | AAATTTCGATTCTGTCTTAGCATGA | 57.384 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1416 | 1728 | 6.602179 | TCTGTCTTAGCATGATTTTGTTTCG | 58.398 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1417 | 1729 | 6.426633 | TCTGTCTTAGCATGATTTTGTTTCGA | 59.573 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
1562 | 1878 | 1.818674 | CCCTTTTACACATGCCCTGTC | 59.181 | 52.381 | 0.00 | 0.00 | 35.29 | 3.51 |
1663 | 1985 | 0.535553 | TTGGGGTGCCTTACGTTGAC | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1745 | 2067 | 9.821240 | ATATTTATACCCAAATGATAAGTGCCA | 57.179 | 29.630 | 0.00 | 0.00 | 30.84 | 4.92 |
1746 | 2068 | 6.952773 | TTATACCCAAATGATAAGTGCCAC | 57.047 | 37.500 | 0.00 | 0.00 | 0.00 | 5.01 |
1747 | 2069 | 3.168035 | ACCCAAATGATAAGTGCCACA | 57.832 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
1748 | 2070 | 2.825532 | ACCCAAATGATAAGTGCCACAC | 59.174 | 45.455 | 0.00 | 0.00 | 34.10 | 3.82 |
1749 | 2071 | 2.159393 | CCCAAATGATAAGTGCCACACG | 60.159 | 50.000 | 0.00 | 0.00 | 39.64 | 4.49 |
1750 | 2072 | 2.487762 | CCAAATGATAAGTGCCACACGT | 59.512 | 45.455 | 0.00 | 0.00 | 39.64 | 4.49 |
1751 | 2073 | 3.491356 | CAAATGATAAGTGCCACACGTG | 58.509 | 45.455 | 15.48 | 15.48 | 39.64 | 4.49 |
1752 | 2074 | 2.472695 | ATGATAAGTGCCACACGTGT | 57.527 | 45.000 | 17.22 | 17.22 | 39.64 | 4.49 |
1753 | 2075 | 1.507562 | TGATAAGTGCCACACGTGTG | 58.492 | 50.000 | 36.13 | 36.13 | 45.23 | 3.82 |
1761 | 2083 | 4.688192 | CACACGTGTGGCACAAAG | 57.312 | 55.556 | 35.65 | 20.89 | 44.16 | 2.77 |
1762 | 2084 | 1.800032 | CACACGTGTGGCACAAAGT | 59.200 | 52.632 | 35.65 | 21.57 | 44.16 | 2.66 |
1763 | 2085 | 1.010580 | CACACGTGTGGCACAAAGTA | 58.989 | 50.000 | 35.65 | 0.00 | 44.16 | 2.24 |
1764 | 2086 | 1.398739 | CACACGTGTGGCACAAAGTAA | 59.601 | 47.619 | 35.65 | 0.00 | 44.16 | 2.24 |
1765 | 2087 | 1.399089 | ACACGTGTGGCACAAAGTAAC | 59.601 | 47.619 | 23.90 | 7.78 | 44.16 | 2.50 |
1766 | 2088 | 1.398739 | CACGTGTGGCACAAAGTAACA | 59.601 | 47.619 | 23.90 | 0.00 | 44.16 | 2.41 |
1767 | 2089 | 1.399089 | ACGTGTGGCACAAAGTAACAC | 59.601 | 47.619 | 23.90 | 6.20 | 44.16 | 3.32 |
1768 | 2090 | 1.268335 | CGTGTGGCACAAAGTAACACC | 60.268 | 52.381 | 23.90 | 5.43 | 44.16 | 4.16 |
1769 | 2091 | 1.018148 | TGTGGCACAAAGTAACACCG | 58.982 | 50.000 | 19.74 | 0.00 | 44.16 | 4.94 |
1770 | 2092 | 0.317519 | GTGGCACAAAGTAACACCGC | 60.318 | 55.000 | 13.86 | 0.00 | 44.16 | 5.68 |
1771 | 2093 | 1.284715 | GGCACAAAGTAACACCGCC | 59.715 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
1772 | 2094 | 1.284715 | GCACAAAGTAACACCGCCC | 59.715 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
1773 | 2095 | 1.170290 | GCACAAAGTAACACCGCCCT | 61.170 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1774 | 2096 | 0.591170 | CACAAAGTAACACCGCCCTG | 59.409 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1775 | 2097 | 1.170290 | ACAAAGTAACACCGCCCTGC | 61.170 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1776 | 2098 | 1.602605 | AAAGTAACACCGCCCTGCC | 60.603 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
1777 | 2099 | 3.894547 | AAGTAACACCGCCCTGCCG | 62.895 | 63.158 | 0.00 | 0.00 | 0.00 | 5.69 |
1778 | 2100 | 4.692475 | GTAACACCGCCCTGCCGT | 62.692 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
1779 | 2101 | 3.943691 | TAACACCGCCCTGCCGTT | 61.944 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
1780 | 2102 | 3.479127 | TAACACCGCCCTGCCGTTT | 62.479 | 57.895 | 0.00 | 0.00 | 0.00 | 3.60 |
1781 | 2103 | 2.962142 | TAACACCGCCCTGCCGTTTT | 62.962 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1782 | 2104 | 3.601685 | CACCGCCCTGCCGTTTTT | 61.602 | 61.111 | 0.00 | 0.00 | 0.00 | 1.94 |
1783 | 2105 | 2.113562 | ACCGCCCTGCCGTTTTTA | 59.886 | 55.556 | 0.00 | 0.00 | 0.00 | 1.52 |
1784 | 2106 | 2.263021 | ACCGCCCTGCCGTTTTTAC | 61.263 | 57.895 | 0.00 | 0.00 | 0.00 | 2.01 |
1785 | 2107 | 2.262303 | CCGCCCTGCCGTTTTTACA | 61.262 | 57.895 | 0.00 | 0.00 | 0.00 | 2.41 |
1786 | 2108 | 1.655329 | CGCCCTGCCGTTTTTACAA | 59.345 | 52.632 | 0.00 | 0.00 | 0.00 | 2.41 |
1787 | 2109 | 0.662077 | CGCCCTGCCGTTTTTACAAC | 60.662 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1788 | 2110 | 0.671796 | GCCCTGCCGTTTTTACAACT | 59.328 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1789 | 2111 | 1.881324 | GCCCTGCCGTTTTTACAACTA | 59.119 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
1790 | 2112 | 2.293955 | GCCCTGCCGTTTTTACAACTAA | 59.706 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1791 | 2113 | 3.243468 | GCCCTGCCGTTTTTACAACTAAA | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
1792 | 2114 | 4.737055 | GCCCTGCCGTTTTTACAACTAAAA | 60.737 | 41.667 | 0.00 | 0.00 | 31.23 | 1.52 |
1793 | 2115 | 5.534407 | CCCTGCCGTTTTTACAACTAAAAT | 58.466 | 37.500 | 0.00 | 0.00 | 32.90 | 1.82 |
1794 | 2116 | 5.986741 | CCCTGCCGTTTTTACAACTAAAATT | 59.013 | 36.000 | 0.00 | 0.00 | 32.90 | 1.82 |
1795 | 2117 | 6.074034 | CCCTGCCGTTTTTACAACTAAAATTG | 60.074 | 38.462 | 0.00 | 0.00 | 32.90 | 2.32 |
1796 | 2118 | 6.275305 | TGCCGTTTTTACAACTAAAATTGC | 57.725 | 33.333 | 0.00 | 0.00 | 32.90 | 3.56 |
1797 | 2119 | 5.234543 | TGCCGTTTTTACAACTAAAATTGCC | 59.765 | 36.000 | 0.00 | 0.00 | 32.90 | 4.52 |
1798 | 2120 | 5.234543 | GCCGTTTTTACAACTAAAATTGCCA | 59.765 | 36.000 | 0.00 | 0.00 | 32.90 | 4.92 |
1799 | 2121 | 6.073494 | GCCGTTTTTACAACTAAAATTGCCAT | 60.073 | 34.615 | 0.00 | 0.00 | 32.90 | 4.40 |
1800 | 2122 | 7.116519 | GCCGTTTTTACAACTAAAATTGCCATA | 59.883 | 33.333 | 0.00 | 0.00 | 32.90 | 2.74 |
1801 | 2123 | 8.979574 | CCGTTTTTACAACTAAAATTGCCATAA | 58.020 | 29.630 | 0.00 | 0.00 | 32.90 | 1.90 |
1845 | 2167 | 9.533253 | AAAAACTGAAACTTGTCATCCAAATAG | 57.467 | 29.630 | 0.00 | 0.00 | 31.20 | 1.73 |
1846 | 2168 | 8.463930 | AAACTGAAACTTGTCATCCAAATAGA | 57.536 | 30.769 | 0.00 | 0.00 | 31.20 | 1.98 |
1847 | 2169 | 8.463930 | AACTGAAACTTGTCATCCAAATAGAA | 57.536 | 30.769 | 0.00 | 0.00 | 31.20 | 2.10 |
1848 | 2170 | 8.463930 | ACTGAAACTTGTCATCCAAATAGAAA | 57.536 | 30.769 | 0.00 | 0.00 | 31.20 | 2.52 |
1849 | 2171 | 8.571336 | ACTGAAACTTGTCATCCAAATAGAAAG | 58.429 | 33.333 | 0.00 | 0.00 | 31.20 | 2.62 |
1850 | 2172 | 8.463930 | TGAAACTTGTCATCCAAATAGAAAGT | 57.536 | 30.769 | 0.00 | 0.00 | 31.20 | 2.66 |
1851 | 2173 | 8.912988 | TGAAACTTGTCATCCAAATAGAAAGTT | 58.087 | 29.630 | 0.00 | 0.00 | 38.02 | 2.66 |
1852 | 2174 | 9.185192 | GAAACTTGTCATCCAAATAGAAAGTTG | 57.815 | 33.333 | 0.00 | 0.00 | 36.88 | 3.16 |
1853 | 2175 | 6.681777 | ACTTGTCATCCAAATAGAAAGTTGC | 58.318 | 36.000 | 0.00 | 0.00 | 31.20 | 4.17 |
1854 | 2176 | 5.643379 | TGTCATCCAAATAGAAAGTTGCC | 57.357 | 39.130 | 0.00 | 0.00 | 29.32 | 4.52 |
1855 | 2177 | 5.076182 | TGTCATCCAAATAGAAAGTTGCCA | 58.924 | 37.500 | 0.00 | 0.00 | 29.32 | 4.92 |
1856 | 2178 | 5.716228 | TGTCATCCAAATAGAAAGTTGCCAT | 59.284 | 36.000 | 0.00 | 0.00 | 29.32 | 4.40 |
1857 | 2179 | 6.889177 | TGTCATCCAAATAGAAAGTTGCCATA | 59.111 | 34.615 | 0.00 | 0.00 | 29.32 | 2.74 |
1858 | 2180 | 7.395772 | TGTCATCCAAATAGAAAGTTGCCATAA | 59.604 | 33.333 | 0.00 | 0.00 | 29.32 | 1.90 |
1859 | 2181 | 8.416329 | GTCATCCAAATAGAAAGTTGCCATAAT | 58.584 | 33.333 | 0.00 | 0.00 | 29.32 | 1.28 |
1860 | 2182 | 8.980596 | TCATCCAAATAGAAAGTTGCCATAATT | 58.019 | 29.630 | 0.00 | 0.00 | 29.32 | 1.40 |
1861 | 2183 | 9.252962 | CATCCAAATAGAAAGTTGCCATAATTC | 57.747 | 33.333 | 0.00 | 0.00 | 29.32 | 2.17 |
1862 | 2184 | 8.359875 | TCCAAATAGAAAGTTGCCATAATTCA | 57.640 | 30.769 | 0.00 | 0.00 | 29.32 | 2.57 |
1863 | 2185 | 8.250332 | TCCAAATAGAAAGTTGCCATAATTCAC | 58.750 | 33.333 | 0.00 | 0.00 | 29.32 | 3.18 |
1864 | 2186 | 8.034215 | CCAAATAGAAAGTTGCCATAATTCACA | 58.966 | 33.333 | 0.00 | 0.00 | 29.32 | 3.58 |
1865 | 2187 | 9.421806 | CAAATAGAAAGTTGCCATAATTCACAA | 57.578 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
1866 | 2188 | 8.986477 | AATAGAAAGTTGCCATAATTCACAAC | 57.014 | 30.769 | 0.00 | 0.00 | 42.08 | 3.32 |
1883 | 2205 | 1.834188 | AACTAAAGTTGCCATCCCCG | 58.166 | 50.000 | 0.00 | 0.00 | 36.80 | 5.73 |
1884 | 2206 | 0.034477 | ACTAAAGTTGCCATCCCCGG | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
1885 | 2207 | 0.751643 | CTAAAGTTGCCATCCCCGGG | 60.752 | 60.000 | 15.80 | 15.80 | 0.00 | 5.73 |
1886 | 2208 | 1.502527 | TAAAGTTGCCATCCCCGGGT | 61.503 | 55.000 | 21.85 | 0.00 | 0.00 | 5.28 |
1887 | 2209 | 1.502527 | AAAGTTGCCATCCCCGGGTA | 61.503 | 55.000 | 21.85 | 2.85 | 0.00 | 3.69 |
1888 | 2210 | 1.502527 | AAGTTGCCATCCCCGGGTAA | 61.503 | 55.000 | 21.85 | 7.64 | 0.00 | 2.85 |
1889 | 2211 | 1.751544 | GTTGCCATCCCCGGGTAAC | 60.752 | 63.158 | 21.85 | 10.54 | 42.37 | 2.50 |
1890 | 2212 | 1.926489 | TTGCCATCCCCGGGTAACT | 60.926 | 57.895 | 21.85 | 0.00 | 0.00 | 2.24 |
1891 | 2213 | 0.620990 | TTGCCATCCCCGGGTAACTA | 60.621 | 55.000 | 21.85 | 0.00 | 0.00 | 2.24 |
1892 | 2214 | 0.620990 | TGCCATCCCCGGGTAACTAA | 60.621 | 55.000 | 21.85 | 0.00 | 0.00 | 2.24 |
1893 | 2215 | 0.547553 | GCCATCCCCGGGTAACTAAA | 59.452 | 55.000 | 21.85 | 0.00 | 0.00 | 1.85 |
1894 | 2216 | 1.476291 | GCCATCCCCGGGTAACTAAAG | 60.476 | 57.143 | 21.85 | 0.35 | 0.00 | 1.85 |
1895 | 2217 | 1.841919 | CCATCCCCGGGTAACTAAAGT | 59.158 | 52.381 | 21.85 | 0.00 | 0.00 | 2.66 |
1896 | 2218 | 2.240414 | CCATCCCCGGGTAACTAAAGTT | 59.760 | 50.000 | 21.85 | 0.39 | 41.73 | 2.66 |
1897 | 2219 | 3.275999 | CATCCCCGGGTAACTAAAGTTG | 58.724 | 50.000 | 21.85 | 2.73 | 38.90 | 3.16 |
1898 | 2220 | 1.003464 | TCCCCGGGTAACTAAAGTTGC | 59.997 | 52.381 | 21.85 | 4.10 | 38.90 | 4.17 |
1921 | 2243 | 4.563404 | AAAAACGTCAGGGCGGAA | 57.437 | 50.000 | 0.00 | 0.00 | 35.98 | 4.30 |
1922 | 2244 | 3.030415 | AAAAACGTCAGGGCGGAAT | 57.970 | 47.368 | 0.00 | 0.00 | 35.98 | 3.01 |
1923 | 2245 | 1.324383 | AAAAACGTCAGGGCGGAATT | 58.676 | 45.000 | 0.00 | 0.00 | 35.98 | 2.17 |
1924 | 2246 | 0.596082 | AAAACGTCAGGGCGGAATTG | 59.404 | 50.000 | 0.00 | 0.00 | 35.98 | 2.32 |
1925 | 2247 | 0.536460 | AAACGTCAGGGCGGAATTGT | 60.536 | 50.000 | 0.00 | 0.00 | 35.98 | 2.71 |
1926 | 2248 | 0.536460 | AACGTCAGGGCGGAATTGTT | 60.536 | 50.000 | 0.00 | 0.00 | 35.98 | 2.83 |
1927 | 2249 | 0.536460 | ACGTCAGGGCGGAATTGTTT | 60.536 | 50.000 | 0.00 | 0.00 | 35.98 | 2.83 |
1928 | 2250 | 0.596082 | CGTCAGGGCGGAATTGTTTT | 59.404 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1929 | 2251 | 1.665735 | CGTCAGGGCGGAATTGTTTTG | 60.666 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
1930 | 2252 | 1.339929 | GTCAGGGCGGAATTGTTTTGT | 59.660 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1931 | 2253 | 1.339610 | TCAGGGCGGAATTGTTTTGTG | 59.660 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
1932 | 2254 | 0.033366 | AGGGCGGAATTGTTTTGTGC | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1933 | 2255 | 0.948623 | GGGCGGAATTGTTTTGTGCC | 60.949 | 55.000 | 0.00 | 0.00 | 40.25 | 5.01 |
1934 | 2256 | 0.249657 | GGCGGAATTGTTTTGTGCCA | 60.250 | 50.000 | 0.00 | 0.00 | 40.66 | 4.92 |
1935 | 2257 | 0.858583 | GCGGAATTGTTTTGTGCCAC | 59.141 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1936 | 2258 | 1.804372 | GCGGAATTGTTTTGTGCCACA | 60.804 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1937 | 2259 | 1.857837 | CGGAATTGTTTTGTGCCACAC | 59.142 | 47.619 | 0.00 | 0.00 | 34.56 | 3.82 |
1938 | 2260 | 1.857837 | GGAATTGTTTTGTGCCACACG | 59.142 | 47.619 | 0.00 | 0.00 | 37.14 | 4.49 |
1939 | 2261 | 2.535331 | GAATTGTTTTGTGCCACACGT | 58.465 | 42.857 | 0.00 | 0.00 | 37.14 | 4.49 |
1940 | 2262 | 1.919918 | ATTGTTTTGTGCCACACGTG | 58.080 | 45.000 | 15.48 | 15.48 | 37.14 | 4.49 |
1941 | 2263 | 0.598562 | TTGTTTTGTGCCACACGTGT | 59.401 | 45.000 | 17.22 | 17.22 | 37.14 | 4.49 |
1942 | 2264 | 0.109551 | TGTTTTGTGCCACACGTGTG | 60.110 | 50.000 | 36.13 | 36.13 | 45.23 | 3.82 |
1952 | 2274 | 2.078849 | CACACGTGTGGCTCTTATCA | 57.921 | 50.000 | 35.65 | 0.00 | 42.10 | 2.15 |
1953 | 2275 | 1.995484 | CACACGTGTGGCTCTTATCAG | 59.005 | 52.381 | 35.65 | 10.09 | 42.10 | 2.90 |
1954 | 2276 | 1.066858 | ACACGTGTGGCTCTTATCAGG | 60.067 | 52.381 | 22.71 | 0.00 | 34.19 | 3.86 |
1955 | 2277 | 0.537188 | ACGTGTGGCTCTTATCAGGG | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1956 | 2278 | 0.537188 | CGTGTGGCTCTTATCAGGGT | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1957 | 2279 | 1.471676 | CGTGTGGCTCTTATCAGGGTC | 60.472 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
1958 | 2280 | 1.134371 | GTGTGGCTCTTATCAGGGTCC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
2071 | 2393 | 1.255882 | AGTGACAGCTGAGTGGAGAG | 58.744 | 55.000 | 23.35 | 0.00 | 0.00 | 3.20 |
2380 | 2702 | 6.767902 | TGGTTTGACATCTATCCTTATTCTGC | 59.232 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
2386 | 2708 | 3.317406 | TCTATCCTTATTCTGCAGGGCA | 58.683 | 45.455 | 15.13 | 0.00 | 36.92 | 5.36 |
2724 | 3046 | 9.999660 | AGTTTTAGGTTACCTCTTTTCTAGAAG | 57.000 | 33.333 | 7.39 | 0.00 | 34.61 | 2.85 |
2815 | 3137 | 0.248498 | TGACTCGAGCGGAATTAGCG | 60.248 | 55.000 | 13.61 | 0.00 | 40.04 | 4.26 |
2893 | 3215 | 1.604604 | GGTGCAAACTACTGCTTGGA | 58.395 | 50.000 | 0.00 | 0.00 | 43.07 | 3.53 |
2991 | 3313 | 7.781324 | AAATTATTGAAGACTGGTGGTGAAT | 57.219 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3012 | 3334 | 2.621556 | TTGGGCCCTAAGAGCAAAAT | 57.378 | 45.000 | 25.70 | 0.00 | 0.00 | 1.82 |
3060 | 3382 | 1.912763 | GCTGGTCCATTTTGGCCCA | 60.913 | 57.895 | 0.00 | 0.00 | 44.42 | 5.36 |
3084 | 3407 | 3.370846 | CCAAAGATGTGGATGTAGCTCCA | 60.371 | 47.826 | 0.00 | 0.00 | 43.09 | 3.86 |
3376 | 3699 | 5.863397 | TGCTTGTAATTTCTAATGCAGTTGC | 59.137 | 36.000 | 0.00 | 0.00 | 42.50 | 4.17 |
3434 | 3757 | 3.442076 | ACCGGAGTCTAAGGAAACAGAT | 58.558 | 45.455 | 9.46 | 0.00 | 0.00 | 2.90 |
3543 | 3866 | 2.512485 | CAAGGTTTGCAGCAATCACA | 57.488 | 45.000 | 9.12 | 0.00 | 0.00 | 3.58 |
3616 | 3939 | 3.907474 | TCTTGTAAGAAGGATGGACACCA | 59.093 | 43.478 | 0.00 | 0.00 | 32.49 | 4.17 |
3722 | 4045 | 4.098501 | TCAGATAGGTGCACTGACTATGTG | 59.901 | 45.833 | 22.14 | 22.14 | 38.87 | 3.21 |
3730 | 4053 | 4.034858 | GTGCACTGACTATGTGATGGAATG | 59.965 | 45.833 | 10.32 | 0.00 | 37.60 | 2.67 |
3746 | 4069 | 8.689972 | GTGATGGAATGTGGAAAGAGAAATATT | 58.310 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3825 | 4148 | 6.713762 | TTGGTGCAGATAATCCCTTAATTG | 57.286 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
3876 | 4199 | 7.119846 | ACAAAGAAGTAAGCTCATGTTCCATAC | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 2.39 |
3879 | 4202 | 5.028549 | AGTAAGCTCATGTTCCATACCAG | 57.971 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
3900 | 4223 | 7.162082 | ACCAGTCTTCTCTATTTTAACCACAG | 58.838 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
3902 | 4225 | 7.661847 | CCAGTCTTCTCTATTTTAACCACAGTT | 59.338 | 37.037 | 0.00 | 0.00 | 40.15 | 3.16 |
4022 | 4347 | 5.028375 | GCAGGTCTTTGTAATTGTAATCGC | 58.972 | 41.667 | 0.00 | 0.00 | 0.00 | 4.58 |
4040 | 4384 | 4.265904 | TCGCCTTGAAGTAGATTGTTGA | 57.734 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
4041 | 4385 | 3.994392 | TCGCCTTGAAGTAGATTGTTGAC | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
4042 | 4386 | 3.745975 | CGCCTTGAAGTAGATTGTTGACA | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
4043 | 4387 | 4.393062 | CGCCTTGAAGTAGATTGTTGACAT | 59.607 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
4044 | 4388 | 5.580691 | CGCCTTGAAGTAGATTGTTGACATA | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4045 | 4389 | 6.258727 | CGCCTTGAAGTAGATTGTTGACATAT | 59.741 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
4046 | 4390 | 7.201644 | CGCCTTGAAGTAGATTGTTGACATATT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
4047 | 4391 | 8.462016 | GCCTTGAAGTAGATTGTTGACATATTT | 58.538 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4054 | 4398 | 8.887717 | AGTAGATTGTTGACATATTTTCTGAGC | 58.112 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
4055 | 4399 | 7.692460 | AGATTGTTGACATATTTTCTGAGCA | 57.308 | 32.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4056 | 4400 | 8.289939 | AGATTGTTGACATATTTTCTGAGCAT | 57.710 | 30.769 | 0.00 | 0.00 | 0.00 | 3.79 |
4057 | 4401 | 8.746530 | AGATTGTTGACATATTTTCTGAGCATT | 58.253 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
4058 | 4402 | 8.697846 | ATTGTTGACATATTTTCTGAGCATTG | 57.302 | 30.769 | 0.00 | 0.00 | 0.00 | 2.82 |
4059 | 4403 | 7.218228 | TGTTGACATATTTTCTGAGCATTGT | 57.782 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4060 | 4404 | 7.660112 | TGTTGACATATTTTCTGAGCATTGTT | 58.340 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
4061 | 4405 | 7.595875 | TGTTGACATATTTTCTGAGCATTGTTG | 59.404 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
4191 | 4535 | 5.496556 | TCATATGATTCGTGTTGTTTCCCT | 58.503 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
4197 | 4541 | 5.533154 | TGATTCGTGTTGTTTCCCTTATGTT | 59.467 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4198 | 4542 | 5.838531 | TTCGTGTTGTTTCCCTTATGTTT | 57.161 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
4199 | 4543 | 5.838531 | TCGTGTTGTTTCCCTTATGTTTT | 57.161 | 34.783 | 0.00 | 0.00 | 0.00 | 2.43 |
4200 | 4544 | 5.823353 | TCGTGTTGTTTCCCTTATGTTTTC | 58.177 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
4201 | 4545 | 5.591067 | TCGTGTTGTTTCCCTTATGTTTTCT | 59.409 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4202 | 4546 | 5.685511 | CGTGTTGTTTCCCTTATGTTTTCTG | 59.314 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4203 | 4547 | 5.983118 | GTGTTGTTTCCCTTATGTTTTCTGG | 59.017 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4204 | 4548 | 5.894393 | TGTTGTTTCCCTTATGTTTTCTGGA | 59.106 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4205 | 4549 | 6.040391 | TGTTGTTTCCCTTATGTTTTCTGGAG | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
4284 | 4638 | 7.039504 | ACCATGCATCAGATTTGTAGTTTTCTT | 60.040 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
4365 | 4719 | 7.935338 | ACACACTTTTAGCTGATGATTTTTG | 57.065 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
4366 | 4720 | 6.925165 | ACACACTTTTAGCTGATGATTTTTGG | 59.075 | 34.615 | 0.00 | 0.00 | 0.00 | 3.28 |
4537 | 4891 | 4.150897 | AGAAACTGTTGCAAGACAGGTA | 57.849 | 40.909 | 19.94 | 0.00 | 46.45 | 3.08 |
4738 | 5092 | 7.920160 | TTTGAAGAATGAAAAGCCTGTTTTT | 57.080 | 28.000 | 0.00 | 0.00 | 33.19 | 1.94 |
4780 | 5134 | 0.883370 | GCCAACGAGTCCGAAAACCT | 60.883 | 55.000 | 0.00 | 0.00 | 39.50 | 3.50 |
5029 | 5384 | 4.270808 | GCAAATTGTTCTTGTGAAACCTGG | 59.729 | 41.667 | 0.00 | 0.00 | 34.36 | 4.45 |
5097 | 5452 | 3.472652 | AGTTGTTTCGTCATTGCCAGTA | 58.527 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
5168 | 5523 | 2.351418 | TCGGCAAGCAAATATGAAGTCG | 59.649 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
5186 | 5541 | 7.963981 | TGAAGTCGATGAACTAAATGTCATTC | 58.036 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
5195 | 5550 | 7.977904 | TGAACTAAATGTCATTCATACTGCAG | 58.022 | 34.615 | 13.48 | 13.48 | 35.48 | 4.41 |
5312 | 6801 | 0.179181 | ACGTACGTAGCATCACGGTG | 60.179 | 55.000 | 21.41 | 0.56 | 46.12 | 4.94 |
5345 | 6834 | 6.870971 | AGTAAAAGCGAAAAGTTACCATGA | 57.129 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
5346 | 6835 | 6.665465 | AGTAAAAGCGAAAAGTTACCATGAC | 58.335 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5347 | 6836 | 5.767816 | AAAAGCGAAAAGTTACCATGACT | 57.232 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
5348 | 6837 | 5.358298 | AAAGCGAAAAGTTACCATGACTC | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
5349 | 6838 | 4.002906 | AGCGAAAAGTTACCATGACTCA | 57.997 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
5379 | 6868 | 4.335594 | ACTTGAGAAAAGTAACTGCCACAC | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
5382 | 6871 | 2.949644 | AGAAAAGTAACTGCCACACCAC | 59.050 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
5384 | 6873 | 2.428544 | AAGTAACTGCCACACCACAA | 57.571 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
5386 | 6875 | 2.504367 | AGTAACTGCCACACCACAATC | 58.496 | 47.619 | 0.00 | 0.00 | 0.00 | 2.67 |
5402 | 6892 | 7.879160 | ACACCACAATCTTTTTGCATCATTATT | 59.121 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5418 | 6908 | 8.350722 | GCATCATTATTGAACACATCAGATCTT | 58.649 | 33.333 | 0.00 | 0.00 | 39.77 | 2.40 |
5436 | 6926 | 8.950210 | TCAGATCTTGTTGAATTTCTATCCAAC | 58.050 | 33.333 | 0.00 | 0.00 | 39.29 | 3.77 |
5443 | 6933 | 7.359595 | TGTTGAATTTCTATCCAACGTTTCAG | 58.640 | 34.615 | 0.00 | 0.00 | 41.08 | 3.02 |
5444 | 6934 | 6.494893 | TGAATTTCTATCCAACGTTTCAGG | 57.505 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
5446 | 6936 | 6.488683 | TGAATTTCTATCCAACGTTTCAGGTT | 59.511 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
5447 | 6937 | 6.894339 | ATTTCTATCCAACGTTTCAGGTTT | 57.106 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
5448 | 6938 | 5.682943 | TTCTATCCAACGTTTCAGGTTTG | 57.317 | 39.130 | 0.00 | 0.00 | 0.00 | 2.93 |
5449 | 6939 | 4.963373 | TCTATCCAACGTTTCAGGTTTGA | 58.037 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
5450 | 6940 | 5.369833 | TCTATCCAACGTTTCAGGTTTGAA | 58.630 | 37.500 | 0.00 | 0.00 | 41.44 | 2.69 |
5451 | 6941 | 4.568152 | ATCCAACGTTTCAGGTTTGAAG | 57.432 | 40.909 | 0.00 | 0.00 | 43.76 | 3.02 |
5452 | 6942 | 3.349022 | TCCAACGTTTCAGGTTTGAAGT | 58.651 | 40.909 | 0.00 | 0.00 | 43.76 | 3.01 |
5453 | 6943 | 3.759618 | TCCAACGTTTCAGGTTTGAAGTT | 59.240 | 39.130 | 0.00 | 0.00 | 43.76 | 2.66 |
5454 | 6944 | 4.218852 | TCCAACGTTTCAGGTTTGAAGTTT | 59.781 | 37.500 | 0.00 | 0.00 | 43.76 | 2.66 |
5455 | 6945 | 5.415077 | TCCAACGTTTCAGGTTTGAAGTTTA | 59.585 | 36.000 | 0.00 | 0.00 | 43.76 | 2.01 |
5456 | 6946 | 6.072064 | TCCAACGTTTCAGGTTTGAAGTTTAA | 60.072 | 34.615 | 0.00 | 0.00 | 43.76 | 1.52 |
5457 | 6947 | 6.586844 | CCAACGTTTCAGGTTTGAAGTTTAAA | 59.413 | 34.615 | 0.00 | 0.00 | 43.76 | 1.52 |
5458 | 6948 | 7.411049 | CCAACGTTTCAGGTTTGAAGTTTAAAC | 60.411 | 37.037 | 13.39 | 13.39 | 43.76 | 2.01 |
5459 | 6949 | 6.679843 | ACGTTTCAGGTTTGAAGTTTAAACA | 58.320 | 32.000 | 20.83 | 2.48 | 43.76 | 2.83 |
5460 | 6950 | 7.146648 | ACGTTTCAGGTTTGAAGTTTAAACAA | 58.853 | 30.769 | 20.83 | 7.68 | 43.76 | 2.83 |
5461 | 6951 | 7.115236 | ACGTTTCAGGTTTGAAGTTTAAACAAC | 59.885 | 33.333 | 20.83 | 14.22 | 43.76 | 3.32 |
5462 | 6952 | 7.441864 | GTTTCAGGTTTGAAGTTTAAACAACG | 58.558 | 34.615 | 20.83 | 10.86 | 43.76 | 4.10 |
5466 | 6956 | 7.964011 | TCAGGTTTGAAGTTTAAACAACGTTAG | 59.036 | 33.333 | 20.83 | 6.93 | 39.24 | 2.34 |
5470 | 6960 | 9.281075 | GTTTGAAGTTTAAACAACGTTAGACAT | 57.719 | 29.630 | 20.06 | 0.00 | 37.82 | 3.06 |
5474 | 6964 | 9.281075 | GAAGTTTAAACAACGTTAGACATGTTT | 57.719 | 29.630 | 20.06 | 15.68 | 45.18 | 2.83 |
5476 | 6966 | 9.925268 | AGTTTAAACAACGTTAGACATGTTTAG | 57.075 | 29.630 | 20.06 | 0.00 | 44.41 | 1.85 |
5495 | 6985 | 0.598065 | GTTCAGCCCATGCGAGTTTT | 59.402 | 50.000 | 0.00 | 0.00 | 44.33 | 2.43 |
5500 | 6990 | 1.213537 | CCCATGCGAGTTTTGCCTG | 59.786 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
5502 | 6992 | 1.286570 | CATGCGAGTTTTGCCTGCA | 59.713 | 52.632 | 0.00 | 0.00 | 40.23 | 4.41 |
5504 | 6994 | 0.108992 | ATGCGAGTTTTGCCTGCATG | 60.109 | 50.000 | 0.00 | 0.00 | 44.02 | 4.06 |
5512 | 7002 | 1.470996 | TTTGCCTGCATGGTGGGTTC | 61.471 | 55.000 | 0.00 | 0.00 | 38.35 | 3.62 |
5534 | 7024 | 4.335594 | TCGATTCGTGCATTCTCTTCTCTA | 59.664 | 41.667 | 5.89 | 0.00 | 0.00 | 2.43 |
5538 | 7028 | 2.857152 | CGTGCATTCTCTTCTCTAGCAC | 59.143 | 50.000 | 0.00 | 0.00 | 45.23 | 4.40 |
5594 | 7101 | 2.772622 | CCCCGGAGCCTACCCAAT | 60.773 | 66.667 | 0.73 | 0.00 | 0.00 | 3.16 |
5601 | 7108 | 0.919710 | GAGCCTACCCAATCCCAAGT | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5602 | 7109 | 0.625849 | AGCCTACCCAATCCCAAGTG | 59.374 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5611 | 7118 | 2.764637 | AATCCCAAGTGTCGCCCCAC | 62.765 | 60.000 | 0.00 | 0.00 | 35.53 | 4.61 |
5613 | 7120 | 2.358737 | CCAAGTGTCGCCCCACTC | 60.359 | 66.667 | 3.61 | 0.00 | 44.74 | 3.51 |
5614 | 7121 | 2.358737 | CAAGTGTCGCCCCACTCC | 60.359 | 66.667 | 3.61 | 0.00 | 44.74 | 3.85 |
5615 | 7122 | 2.526873 | AAGTGTCGCCCCACTCCT | 60.527 | 61.111 | 3.61 | 0.00 | 44.74 | 3.69 |
5616 | 7123 | 2.584391 | AAGTGTCGCCCCACTCCTC | 61.584 | 63.158 | 3.61 | 0.00 | 44.74 | 3.71 |
5617 | 7124 | 4.083862 | GTGTCGCCCCACTCCTCC | 62.084 | 72.222 | 0.00 | 0.00 | 32.50 | 4.30 |
5623 | 7130 | 3.391382 | CCCCACTCCTCCCGACAC | 61.391 | 72.222 | 0.00 | 0.00 | 0.00 | 3.67 |
5624 | 7131 | 2.603473 | CCCACTCCTCCCGACACA | 60.603 | 66.667 | 0.00 | 0.00 | 0.00 | 3.72 |
5625 | 7132 | 1.990060 | CCCACTCCTCCCGACACAT | 60.990 | 63.158 | 0.00 | 0.00 | 0.00 | 3.21 |
5626 | 7133 | 1.553690 | CCCACTCCTCCCGACACATT | 61.554 | 60.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5627 | 7134 | 0.108138 | CCACTCCTCCCGACACATTC | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
5628 | 7135 | 0.608130 | CACTCCTCCCGACACATTCA | 59.392 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5629 | 7136 | 1.208052 | CACTCCTCCCGACACATTCAT | 59.792 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
5630 | 7137 | 2.430694 | CACTCCTCCCGACACATTCATA | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
5631 | 7138 | 3.070159 | CACTCCTCCCGACACATTCATAT | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 1.78 |
5632 | 7139 | 3.322254 | ACTCCTCCCGACACATTCATATC | 59.678 | 47.826 | 0.00 | 0.00 | 0.00 | 1.63 |
5633 | 7140 | 3.304829 | TCCTCCCGACACATTCATATCA | 58.695 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
5634 | 7141 | 3.321968 | TCCTCCCGACACATTCATATCAG | 59.678 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
5635 | 7142 | 3.555795 | CCTCCCGACACATTCATATCAGG | 60.556 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
5636 | 7143 | 3.038280 | TCCCGACACATTCATATCAGGT | 58.962 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
5637 | 7144 | 3.133691 | CCCGACACATTCATATCAGGTG | 58.866 | 50.000 | 0.00 | 0.00 | 35.66 | 4.00 |
5638 | 7145 | 3.133691 | CCGACACATTCATATCAGGTGG | 58.866 | 50.000 | 0.00 | 0.00 | 33.91 | 4.61 |
5639 | 7146 | 3.181466 | CCGACACATTCATATCAGGTGGA | 60.181 | 47.826 | 0.00 | 0.00 | 33.91 | 4.02 |
5640 | 7147 | 4.053983 | CGACACATTCATATCAGGTGGAG | 58.946 | 47.826 | 0.00 | 0.00 | 33.91 | 3.86 |
5641 | 7148 | 4.384056 | GACACATTCATATCAGGTGGAGG | 58.616 | 47.826 | 0.00 | 0.00 | 33.91 | 4.30 |
5642 | 7149 | 3.137176 | ACACATTCATATCAGGTGGAGGG | 59.863 | 47.826 | 0.00 | 0.00 | 33.91 | 4.30 |
5643 | 7150 | 3.392285 | CACATTCATATCAGGTGGAGGGA | 59.608 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
5644 | 7151 | 3.649981 | ACATTCATATCAGGTGGAGGGAG | 59.350 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5645 | 7152 | 2.405618 | TCATATCAGGTGGAGGGAGG | 57.594 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5646 | 7153 | 1.132721 | TCATATCAGGTGGAGGGAGGG | 60.133 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
5647 | 7154 | 0.194587 | ATATCAGGTGGAGGGAGGGG | 59.805 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5648 | 7155 | 1.973346 | TATCAGGTGGAGGGAGGGGG | 61.973 | 65.000 | 0.00 | 0.00 | 0.00 | 5.40 |
5662 | 7169 | 2.874751 | GGGGGCGTGTCGAATTTG | 59.125 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
5663 | 7170 | 2.696759 | GGGGGCGTGTCGAATTTGG | 61.697 | 63.158 | 0.00 | 0.00 | 0.00 | 3.28 |
5664 | 7171 | 2.696759 | GGGGCGTGTCGAATTTGGG | 61.697 | 63.158 | 0.00 | 0.00 | 0.00 | 4.12 |
5665 | 7172 | 1.969589 | GGGCGTGTCGAATTTGGGT | 60.970 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
5666 | 7173 | 0.674269 | GGGCGTGTCGAATTTGGGTA | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
5667 | 7174 | 1.158434 | GGCGTGTCGAATTTGGGTAA | 58.842 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
5668 | 7175 | 1.135888 | GGCGTGTCGAATTTGGGTAAC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 2.50 |
5669 | 7176 | 1.802365 | GCGTGTCGAATTTGGGTAACT | 59.198 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
5675 | 7444 | 0.172578 | GAATTTGGGTAACTGCGCCC | 59.827 | 55.000 | 4.18 | 0.00 | 45.04 | 6.13 |
5680 | 7449 | 2.038837 | GGGTAACTGCGCCCACTTC | 61.039 | 63.158 | 4.18 | 0.00 | 44.23 | 3.01 |
5739 | 7508 | 1.153086 | AATCTGCGCCATCTCCCAC | 60.153 | 57.895 | 4.18 | 0.00 | 0.00 | 4.61 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 9.503399 | GTCGAATTATTTTAGGATCCCAATAGT | 57.497 | 33.333 | 8.55 | 3.40 | 0.00 | 2.12 |
37 | 38 | 1.067142 | GTTCCCGGAAATTTGGAAGGC | 60.067 | 52.381 | 0.73 | 0.00 | 38.77 | 4.35 |
71 | 72 | 2.766313 | TCTCCGTCCACAAATGACAAG | 58.234 | 47.619 | 0.00 | 0.00 | 32.91 | 3.16 |
79 | 80 | 0.682852 | AATCCGTTCTCCGTCCACAA | 59.317 | 50.000 | 0.00 | 0.00 | 33.66 | 3.33 |
83 | 84 | 0.391263 | AGCAAATCCGTTCTCCGTCC | 60.391 | 55.000 | 0.00 | 0.00 | 33.66 | 4.79 |
90 | 91 | 1.153958 | GCAGGCAGCAAATCCGTTC | 60.154 | 57.895 | 0.00 | 0.00 | 44.79 | 3.95 |
112 | 113 | 3.737266 | TGAGTACGATGGAACGAACAAAC | 59.263 | 43.478 | 0.00 | 0.00 | 37.03 | 2.93 |
121 | 122 | 0.468226 | GGGGCATGAGTACGATGGAA | 59.532 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
125 | 137 | 0.469917 | CTTGGGGGCATGAGTACGAT | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
138 | 150 | 4.223144 | TCTTTCTTTTCTTTCCCTTGGGG | 58.777 | 43.478 | 5.78 | 0.00 | 46.11 | 4.96 |
147 | 159 | 9.554395 | TGGTTTGTTTCTTTCTTTCTTTTCTTT | 57.446 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
150 | 162 | 8.227791 | GGTTGGTTTGTTTCTTTCTTTCTTTTC | 58.772 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
151 | 163 | 7.095397 | CGGTTGGTTTGTTTCTTTCTTTCTTTT | 60.095 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
156 | 168 | 4.221041 | TCCGGTTGGTTTGTTTCTTTCTTT | 59.779 | 37.500 | 0.00 | 0.00 | 36.30 | 2.52 |
157 | 169 | 3.764972 | TCCGGTTGGTTTGTTTCTTTCTT | 59.235 | 39.130 | 0.00 | 0.00 | 36.30 | 2.52 |
158 | 170 | 3.358118 | TCCGGTTGGTTTGTTTCTTTCT | 58.642 | 40.909 | 0.00 | 0.00 | 36.30 | 2.52 |
163 | 175 | 1.957877 | TGGATCCGGTTGGTTTGTTTC | 59.042 | 47.619 | 7.39 | 0.00 | 36.30 | 2.78 |
193 | 205 | 4.134187 | CGTCGTGGCACGCATGAC | 62.134 | 66.667 | 33.59 | 24.38 | 42.21 | 3.06 |
238 | 250 | 0.819666 | GGAGAATGGATTCGGGTGGC | 60.820 | 60.000 | 0.00 | 0.00 | 41.56 | 5.01 |
277 | 289 | 1.065647 | ATATCGTCCGAGGGGAGAGA | 58.934 | 55.000 | 0.00 | 0.00 | 44.97 | 3.10 |
279 | 291 | 0.769247 | TCATATCGTCCGAGGGGAGA | 59.231 | 55.000 | 0.00 | 0.00 | 44.97 | 3.71 |
280 | 292 | 1.840737 | ATCATATCGTCCGAGGGGAG | 58.159 | 55.000 | 0.00 | 0.00 | 44.97 | 4.30 |
281 | 293 | 1.893137 | CAATCATATCGTCCGAGGGGA | 59.107 | 52.381 | 0.00 | 0.00 | 41.08 | 4.81 |
339 | 361 | 1.228657 | AAGAGGTTGCTCGCGGAAAC | 61.229 | 55.000 | 6.13 | 8.13 | 32.72 | 2.78 |
344 | 366 | 0.442699 | GGTTTAAGAGGTTGCTCGCG | 59.557 | 55.000 | 0.00 | 0.00 | 0.00 | 5.87 |
788 | 1096 | 4.025401 | CACAACCGAACGGCTGCC | 62.025 | 66.667 | 15.09 | 9.11 | 39.32 | 4.85 |
789 | 1097 | 2.954753 | CTCACAACCGAACGGCTGC | 61.955 | 63.158 | 15.09 | 0.00 | 39.32 | 5.25 |
790 | 1098 | 2.317609 | CCTCACAACCGAACGGCTG | 61.318 | 63.158 | 13.32 | 13.61 | 39.32 | 4.85 |
791 | 1099 | 1.466025 | TACCTCACAACCGAACGGCT | 61.466 | 55.000 | 13.32 | 0.00 | 39.32 | 5.52 |
934 | 1242 | 2.101700 | GAGGAAAATGCGCCTCCTG | 58.898 | 57.895 | 18.71 | 0.00 | 43.91 | 3.86 |
975 | 1283 | 4.485163 | CCAAAAAGCAAGAAAGATACCCG | 58.515 | 43.478 | 0.00 | 0.00 | 0.00 | 5.28 |
979 | 1287 | 5.481105 | CATGGCCAAAAAGCAAGAAAGATA | 58.519 | 37.500 | 10.96 | 0.00 | 0.00 | 1.98 |
1158 | 1466 | 0.950555 | GATTGTCAGCAGCCGTGTCA | 60.951 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1239 | 1547 | 2.922387 | CTCGTCATCAGAAACAGAGCAG | 59.078 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1248 | 1556 | 2.890945 | TGACTTGGTCTCGTCATCAGAA | 59.109 | 45.455 | 0.00 | 0.00 | 35.40 | 3.02 |
1346 | 1654 | 0.181114 | GAGATATGTGCACCTGGCCA | 59.819 | 55.000 | 15.69 | 4.71 | 43.89 | 5.36 |
1395 | 1707 | 6.303259 | GTGTCGAAACAAAATCATGCTAAGAC | 59.697 | 38.462 | 0.00 | 0.00 | 37.08 | 3.01 |
1416 | 1728 | 5.049405 | ACATGTCCGATCTTTCTTTTGTGTC | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1417 | 1729 | 4.821805 | ACATGTCCGATCTTTCTTTTGTGT | 59.178 | 37.500 | 0.00 | 0.00 | 0.00 | 3.72 |
1562 | 1878 | 7.647715 | AGTTTTAAGTCATGAAATTTGGTGACG | 59.352 | 33.333 | 19.13 | 0.00 | 44.20 | 4.35 |
1663 | 1985 | 6.540189 | CCAATCTTAATCGCCCCTAATCTATG | 59.460 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
1725 | 2047 | 4.644685 | GTGTGGCACTTATCATTTGGGTAT | 59.355 | 41.667 | 19.83 | 0.00 | 0.00 | 2.73 |
1728 | 2050 | 2.159393 | CGTGTGGCACTTATCATTTGGG | 60.159 | 50.000 | 19.83 | 0.00 | 31.34 | 4.12 |
1729 | 2051 | 2.487762 | ACGTGTGGCACTTATCATTTGG | 59.512 | 45.455 | 19.83 | 0.00 | 31.34 | 3.28 |
1730 | 2052 | 3.058293 | ACACGTGTGGCACTTATCATTTG | 60.058 | 43.478 | 22.71 | 7.02 | 34.19 | 2.32 |
1731 | 2053 | 3.058293 | CACACGTGTGGCACTTATCATTT | 60.058 | 43.478 | 35.65 | 0.00 | 42.10 | 2.32 |
1732 | 2054 | 2.483877 | CACACGTGTGGCACTTATCATT | 59.516 | 45.455 | 35.65 | 0.00 | 42.10 | 2.57 |
1733 | 2055 | 2.076100 | CACACGTGTGGCACTTATCAT | 58.924 | 47.619 | 35.65 | 0.33 | 42.10 | 2.45 |
1734 | 2056 | 1.507562 | CACACGTGTGGCACTTATCA | 58.492 | 50.000 | 35.65 | 0.00 | 42.10 | 2.15 |
1744 | 2066 | 1.010580 | TACTTTGTGCCACACGTGTG | 58.989 | 50.000 | 36.13 | 36.13 | 45.23 | 3.82 |
1745 | 2067 | 1.399089 | GTTACTTTGTGCCACACGTGT | 59.601 | 47.619 | 17.22 | 17.22 | 37.14 | 4.49 |
1746 | 2068 | 1.398739 | TGTTACTTTGTGCCACACGTG | 59.601 | 47.619 | 15.48 | 15.48 | 37.14 | 4.49 |
1747 | 2069 | 1.399089 | GTGTTACTTTGTGCCACACGT | 59.601 | 47.619 | 0.00 | 0.16 | 37.14 | 4.49 |
1748 | 2070 | 1.268335 | GGTGTTACTTTGTGCCACACG | 60.268 | 52.381 | 0.00 | 0.00 | 38.93 | 4.49 |
1749 | 2071 | 1.268335 | CGGTGTTACTTTGTGCCACAC | 60.268 | 52.381 | 0.00 | 0.00 | 37.59 | 3.82 |
1750 | 2072 | 1.018148 | CGGTGTTACTTTGTGCCACA | 58.982 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1751 | 2073 | 0.317519 | GCGGTGTTACTTTGTGCCAC | 60.318 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1752 | 2074 | 1.448922 | GGCGGTGTTACTTTGTGCCA | 61.449 | 55.000 | 0.00 | 0.00 | 40.66 | 4.92 |
1753 | 2075 | 1.284715 | GGCGGTGTTACTTTGTGCC | 59.715 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
1754 | 2076 | 1.170290 | AGGGCGGTGTTACTTTGTGC | 61.170 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1755 | 2077 | 0.591170 | CAGGGCGGTGTTACTTTGTG | 59.409 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1756 | 2078 | 1.170290 | GCAGGGCGGTGTTACTTTGT | 61.170 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1757 | 2079 | 1.579429 | GCAGGGCGGTGTTACTTTG | 59.421 | 57.895 | 0.00 | 0.00 | 0.00 | 2.77 |
1758 | 2080 | 1.602605 | GGCAGGGCGGTGTTACTTT | 60.603 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
1759 | 2081 | 2.033602 | GGCAGGGCGGTGTTACTT | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 2.24 |
1760 | 2082 | 4.388499 | CGGCAGGGCGGTGTTACT | 62.388 | 66.667 | 7.42 | 0.00 | 0.00 | 2.24 |
1761 | 2083 | 4.692475 | ACGGCAGGGCGGTGTTAC | 62.692 | 66.667 | 19.43 | 0.00 | 40.43 | 2.50 |
1762 | 2084 | 2.962142 | AAAACGGCAGGGCGGTGTTA | 62.962 | 55.000 | 19.43 | 0.00 | 41.05 | 2.41 |
1763 | 2085 | 4.887190 | AAACGGCAGGGCGGTGTT | 62.887 | 61.111 | 19.43 | 7.60 | 41.05 | 3.32 |
1764 | 2086 | 2.962142 | TAAAAACGGCAGGGCGGTGT | 62.962 | 55.000 | 19.43 | 5.00 | 41.05 | 4.16 |
1765 | 2087 | 2.262303 | TAAAAACGGCAGGGCGGTG | 61.262 | 57.895 | 19.43 | 0.00 | 41.05 | 4.94 |
1766 | 2088 | 2.113562 | TAAAAACGGCAGGGCGGT | 59.886 | 55.556 | 19.43 | 10.43 | 43.64 | 5.68 |
1767 | 2089 | 1.797211 | TTGTAAAAACGGCAGGGCGG | 61.797 | 55.000 | 19.43 | 6.07 | 35.02 | 6.13 |
1768 | 2090 | 0.662077 | GTTGTAAAAACGGCAGGGCG | 60.662 | 55.000 | 13.96 | 13.96 | 0.00 | 6.13 |
1769 | 2091 | 0.671796 | AGTTGTAAAAACGGCAGGGC | 59.328 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1770 | 2092 | 4.571372 | TTTAGTTGTAAAAACGGCAGGG | 57.429 | 40.909 | 0.00 | 0.00 | 0.00 | 4.45 |
1771 | 2093 | 6.563196 | GCAATTTTAGTTGTAAAAACGGCAGG | 60.563 | 38.462 | 0.00 | 0.00 | 40.65 | 4.85 |
1772 | 2094 | 6.351749 | GCAATTTTAGTTGTAAAAACGGCAG | 58.648 | 36.000 | 0.00 | 0.00 | 40.65 | 4.85 |
1773 | 2095 | 5.234543 | GGCAATTTTAGTTGTAAAAACGGCA | 59.765 | 36.000 | 10.76 | 0.00 | 40.65 | 5.69 |
1774 | 2096 | 5.234543 | TGGCAATTTTAGTTGTAAAAACGGC | 59.765 | 36.000 | 0.00 | 8.22 | 40.65 | 5.68 |
1775 | 2097 | 6.830114 | TGGCAATTTTAGTTGTAAAAACGG | 57.170 | 33.333 | 0.00 | 0.00 | 40.65 | 4.44 |
1819 | 2141 | 9.533253 | CTATTTGGATGACAAGTTTCAGTTTTT | 57.467 | 29.630 | 0.00 | 0.00 | 40.82 | 1.94 |
1820 | 2142 | 8.912988 | TCTATTTGGATGACAAGTTTCAGTTTT | 58.087 | 29.630 | 0.00 | 0.00 | 40.82 | 2.43 |
1821 | 2143 | 8.463930 | TCTATTTGGATGACAAGTTTCAGTTT | 57.536 | 30.769 | 0.00 | 0.00 | 40.82 | 2.66 |
1822 | 2144 | 8.463930 | TTCTATTTGGATGACAAGTTTCAGTT | 57.536 | 30.769 | 0.00 | 0.00 | 40.82 | 3.16 |
1823 | 2145 | 8.463930 | TTTCTATTTGGATGACAAGTTTCAGT | 57.536 | 30.769 | 0.00 | 0.00 | 40.82 | 3.41 |
1824 | 2146 | 8.571336 | ACTTTCTATTTGGATGACAAGTTTCAG | 58.429 | 33.333 | 0.00 | 0.00 | 40.82 | 3.02 |
1825 | 2147 | 8.463930 | ACTTTCTATTTGGATGACAAGTTTCA | 57.536 | 30.769 | 0.00 | 0.00 | 40.82 | 2.69 |
1826 | 2148 | 9.185192 | CAACTTTCTATTTGGATGACAAGTTTC | 57.815 | 33.333 | 0.00 | 0.00 | 40.82 | 2.78 |
1827 | 2149 | 7.653311 | GCAACTTTCTATTTGGATGACAAGTTT | 59.347 | 33.333 | 0.00 | 0.00 | 40.82 | 2.66 |
1828 | 2150 | 7.147976 | GCAACTTTCTATTTGGATGACAAGTT | 58.852 | 34.615 | 0.00 | 0.00 | 40.82 | 2.66 |
1829 | 2151 | 6.294731 | GGCAACTTTCTATTTGGATGACAAGT | 60.295 | 38.462 | 0.00 | 0.00 | 40.82 | 3.16 |
1830 | 2152 | 6.095377 | GGCAACTTTCTATTTGGATGACAAG | 58.905 | 40.000 | 0.00 | 0.00 | 40.82 | 3.16 |
1831 | 2153 | 5.538053 | TGGCAACTTTCTATTTGGATGACAA | 59.462 | 36.000 | 0.00 | 0.00 | 35.37 | 3.18 |
1832 | 2154 | 5.076182 | TGGCAACTTTCTATTTGGATGACA | 58.924 | 37.500 | 0.00 | 0.00 | 37.61 | 3.58 |
1833 | 2155 | 5.643379 | TGGCAACTTTCTATTTGGATGAC | 57.357 | 39.130 | 0.00 | 0.00 | 37.61 | 3.06 |
1834 | 2156 | 7.953005 | TTATGGCAACTTTCTATTTGGATGA | 57.047 | 32.000 | 0.00 | 0.00 | 37.61 | 2.92 |
1835 | 2157 | 9.252962 | GAATTATGGCAACTTTCTATTTGGATG | 57.747 | 33.333 | 0.00 | 0.00 | 37.61 | 3.51 |
1836 | 2158 | 8.980596 | TGAATTATGGCAACTTTCTATTTGGAT | 58.019 | 29.630 | 0.00 | 0.00 | 37.61 | 3.41 |
1837 | 2159 | 8.250332 | GTGAATTATGGCAACTTTCTATTTGGA | 58.750 | 33.333 | 0.00 | 0.00 | 37.61 | 3.53 |
1838 | 2160 | 8.034215 | TGTGAATTATGGCAACTTTCTATTTGG | 58.966 | 33.333 | 0.00 | 0.00 | 37.61 | 3.28 |
1839 | 2161 | 8.984891 | TGTGAATTATGGCAACTTTCTATTTG | 57.015 | 30.769 | 0.00 | 0.00 | 37.61 | 2.32 |
1840 | 2162 | 9.423061 | GTTGTGAATTATGGCAACTTTCTATTT | 57.577 | 29.630 | 0.00 | 0.00 | 38.41 | 1.40 |
1841 | 2163 | 8.806146 | AGTTGTGAATTATGGCAACTTTCTATT | 58.194 | 29.630 | 0.00 | 0.00 | 46.18 | 1.73 |
1842 | 2164 | 8.353423 | AGTTGTGAATTATGGCAACTTTCTAT | 57.647 | 30.769 | 0.00 | 0.00 | 46.18 | 1.98 |
1843 | 2165 | 7.759489 | AGTTGTGAATTATGGCAACTTTCTA | 57.241 | 32.000 | 0.00 | 0.00 | 46.18 | 2.10 |
1844 | 2166 | 6.655078 | AGTTGTGAATTATGGCAACTTTCT | 57.345 | 33.333 | 0.00 | 0.00 | 46.18 | 2.52 |
1845 | 2167 | 8.810652 | TTTAGTTGTGAATTATGGCAACTTTC | 57.189 | 30.769 | 12.90 | 0.00 | 46.18 | 2.62 |
1846 | 2168 | 8.421002 | ACTTTAGTTGTGAATTATGGCAACTTT | 58.579 | 29.630 | 12.90 | 0.00 | 46.18 | 2.66 |
1847 | 2169 | 7.951591 | ACTTTAGTTGTGAATTATGGCAACTT | 58.048 | 30.769 | 12.90 | 0.00 | 46.18 | 2.66 |
1864 | 2186 | 1.615919 | CCGGGGATGGCAACTTTAGTT | 60.616 | 52.381 | 0.00 | 0.00 | 39.12 | 2.24 |
1865 | 2187 | 0.034477 | CCGGGGATGGCAACTTTAGT | 60.034 | 55.000 | 0.00 | 0.00 | 37.61 | 2.24 |
1866 | 2188 | 0.751643 | CCCGGGGATGGCAACTTTAG | 60.752 | 60.000 | 14.71 | 0.00 | 37.61 | 1.85 |
1867 | 2189 | 1.304952 | CCCGGGGATGGCAACTTTA | 59.695 | 57.895 | 14.71 | 0.00 | 37.61 | 1.85 |
1868 | 2190 | 1.502527 | TACCCGGGGATGGCAACTTT | 61.503 | 55.000 | 27.92 | 0.33 | 37.61 | 2.66 |
1869 | 2191 | 1.502527 | TTACCCGGGGATGGCAACTT | 61.503 | 55.000 | 27.92 | 0.96 | 37.61 | 2.66 |
1870 | 2192 | 1.926489 | TTACCCGGGGATGGCAACT | 60.926 | 57.895 | 27.92 | 1.85 | 37.61 | 3.16 |
1871 | 2193 | 1.751544 | GTTACCCGGGGATGGCAAC | 60.752 | 63.158 | 27.92 | 7.18 | 0.00 | 4.17 |
1872 | 2194 | 0.620990 | TAGTTACCCGGGGATGGCAA | 60.621 | 55.000 | 27.92 | 0.00 | 0.00 | 4.52 |
1873 | 2195 | 0.620990 | TTAGTTACCCGGGGATGGCA | 60.621 | 55.000 | 27.92 | 0.00 | 0.00 | 4.92 |
1874 | 2196 | 0.547553 | TTTAGTTACCCGGGGATGGC | 59.452 | 55.000 | 27.92 | 10.07 | 0.00 | 4.40 |
1875 | 2197 | 1.841919 | ACTTTAGTTACCCGGGGATGG | 59.158 | 52.381 | 27.92 | 8.62 | 0.00 | 3.51 |
1876 | 2198 | 3.275999 | CAACTTTAGTTACCCGGGGATG | 58.724 | 50.000 | 27.92 | 4.55 | 36.32 | 3.51 |
1877 | 2199 | 2.356432 | GCAACTTTAGTTACCCGGGGAT | 60.356 | 50.000 | 27.92 | 7.25 | 36.32 | 3.85 |
1878 | 2200 | 1.003464 | GCAACTTTAGTTACCCGGGGA | 59.997 | 52.381 | 27.92 | 16.00 | 36.32 | 4.81 |
1879 | 2201 | 1.456296 | GCAACTTTAGTTACCCGGGG | 58.544 | 55.000 | 27.92 | 12.73 | 36.32 | 5.73 |
1880 | 2202 | 1.271488 | TGGCAACTTTAGTTACCCGGG | 60.271 | 52.381 | 22.25 | 22.25 | 40.04 | 5.73 |
1881 | 2203 | 2.188062 | TGGCAACTTTAGTTACCCGG | 57.812 | 50.000 | 8.95 | 0.00 | 40.04 | 5.73 |
1882 | 2204 | 5.883503 | TTAATGGCAACTTTAGTTACCCG | 57.116 | 39.130 | 8.95 | 0.00 | 40.04 | 5.28 |
1904 | 2226 | 1.000717 | CAATTCCGCCCTGACGTTTTT | 60.001 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
1905 | 2227 | 0.596082 | CAATTCCGCCCTGACGTTTT | 59.404 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1906 | 2228 | 0.536460 | ACAATTCCGCCCTGACGTTT | 60.536 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
1907 | 2229 | 0.536460 | AACAATTCCGCCCTGACGTT | 60.536 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
1908 | 2230 | 0.536460 | AAACAATTCCGCCCTGACGT | 60.536 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1909 | 2231 | 0.596082 | AAAACAATTCCGCCCTGACG | 59.404 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1910 | 2232 | 1.339929 | ACAAAACAATTCCGCCCTGAC | 59.660 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1911 | 2233 | 1.339610 | CACAAAACAATTCCGCCCTGA | 59.660 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
1912 | 2234 | 1.782044 | CACAAAACAATTCCGCCCTG | 58.218 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1913 | 2235 | 0.033366 | GCACAAAACAATTCCGCCCT | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1914 | 2236 | 0.948623 | GGCACAAAACAATTCCGCCC | 60.949 | 55.000 | 0.00 | 0.00 | 31.76 | 6.13 |
1915 | 2237 | 0.249657 | TGGCACAAAACAATTCCGCC | 60.250 | 50.000 | 0.00 | 0.00 | 38.56 | 6.13 |
1916 | 2238 | 0.858583 | GTGGCACAAAACAATTCCGC | 59.141 | 50.000 | 13.86 | 0.00 | 44.16 | 5.54 |
1917 | 2239 | 1.857837 | GTGTGGCACAAAACAATTCCG | 59.142 | 47.619 | 23.90 | 0.00 | 44.16 | 4.30 |
1918 | 2240 | 1.857837 | CGTGTGGCACAAAACAATTCC | 59.142 | 47.619 | 23.90 | 5.43 | 44.16 | 3.01 |
1919 | 2241 | 2.281234 | CACGTGTGGCACAAAACAATTC | 59.719 | 45.455 | 23.90 | 6.20 | 44.16 | 2.17 |
1920 | 2242 | 2.266554 | CACGTGTGGCACAAAACAATT | 58.733 | 42.857 | 23.90 | 0.00 | 44.16 | 2.32 |
1921 | 2243 | 1.203523 | ACACGTGTGGCACAAAACAAT | 59.796 | 42.857 | 23.90 | 3.15 | 44.16 | 2.71 |
1922 | 2244 | 0.598562 | ACACGTGTGGCACAAAACAA | 59.401 | 45.000 | 23.90 | 0.00 | 44.16 | 2.83 |
1923 | 2245 | 0.109551 | CACACGTGTGGCACAAAACA | 60.110 | 50.000 | 35.65 | 0.00 | 44.16 | 2.83 |
1924 | 2246 | 2.647784 | CACACGTGTGGCACAAAAC | 58.352 | 52.632 | 35.65 | 9.38 | 44.16 | 2.43 |
1933 | 2255 | 1.995484 | CTGATAAGAGCCACACGTGTG | 59.005 | 52.381 | 36.13 | 36.13 | 45.23 | 3.82 |
1934 | 2256 | 1.066858 | CCTGATAAGAGCCACACGTGT | 60.067 | 52.381 | 17.22 | 17.22 | 0.00 | 4.49 |
1935 | 2257 | 1.645034 | CCTGATAAGAGCCACACGTG | 58.355 | 55.000 | 15.48 | 15.48 | 0.00 | 4.49 |
1936 | 2258 | 0.537188 | CCCTGATAAGAGCCACACGT | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1937 | 2259 | 0.537188 | ACCCTGATAAGAGCCACACG | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1938 | 2260 | 1.134371 | GGACCCTGATAAGAGCCACAC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.82 |
1939 | 2261 | 1.204146 | GGACCCTGATAAGAGCCACA | 58.796 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1940 | 2262 | 1.501582 | AGGACCCTGATAAGAGCCAC | 58.498 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1941 | 2263 | 3.637821 | ATAGGACCCTGATAAGAGCCA | 57.362 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
1942 | 2264 | 4.984146 | AAATAGGACCCTGATAAGAGCC | 57.016 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
1943 | 2265 | 8.596781 | TCTATAAATAGGACCCTGATAAGAGC | 57.403 | 38.462 | 0.00 | 0.00 | 0.00 | 4.09 |
1977 | 2299 | 8.379457 | AGAAAGGAATACAGAGTACACAAAAC | 57.621 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2049 | 2371 | 0.250038 | TCCACTCAGCTGTCACTTGC | 60.250 | 55.000 | 14.67 | 0.00 | 0.00 | 4.01 |
2498 | 2820 | 2.906389 | ACCATCTGTTTCAGCTCCACTA | 59.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2893 | 3215 | 6.166982 | GCCACTGAAAGATAGTAAAGTGAGT | 58.833 | 40.000 | 2.32 | 0.00 | 37.76 | 3.41 |
2969 | 3291 | 7.781324 | AAATTCACCACCAGTCTTCAATAAT | 57.219 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2973 | 3295 | 4.099266 | CCAAAATTCACCACCAGTCTTCAA | 59.901 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
2986 | 3308 | 2.166459 | GCTCTTAGGGCCCAAAATTCAC | 59.834 | 50.000 | 27.56 | 1.79 | 0.00 | 3.18 |
2991 | 3313 | 2.390225 | TTTGCTCTTAGGGCCCAAAA | 57.610 | 45.000 | 27.56 | 17.09 | 0.00 | 2.44 |
3049 | 3371 | 1.055040 | TCTTTGGGTGGGCCAAAATG | 58.945 | 50.000 | 8.40 | 6.12 | 37.08 | 2.32 |
3050 | 3372 | 1.629861 | CATCTTTGGGTGGGCCAAAAT | 59.370 | 47.619 | 8.40 | 0.00 | 37.08 | 1.82 |
3060 | 3382 | 2.578021 | AGCTACATCCACATCTTTGGGT | 59.422 | 45.455 | 0.00 | 0.00 | 37.24 | 4.51 |
3084 | 3407 | 2.840651 | AGGCTGTAAAGATAGCAGTGGT | 59.159 | 45.455 | 0.00 | 0.00 | 41.40 | 4.16 |
3153 | 3476 | 6.935167 | ACATAAAGGGATGGACAATCAAAAC | 58.065 | 36.000 | 0.00 | 0.00 | 36.98 | 2.43 |
3210 | 3533 | 7.581213 | TGACATTCAATATTGTTGTATCCCC | 57.419 | 36.000 | 19.61 | 11.66 | 0.00 | 4.81 |
3376 | 3699 | 5.877564 | GGAACTCTTCTTTTGGTATCCTCAG | 59.122 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3543 | 3866 | 1.493022 | TGGAGGCACCTTAACTTGTGT | 59.507 | 47.619 | 1.84 | 0.00 | 39.86 | 3.72 |
3686 | 4009 | 5.467063 | GCACCTATCTGATAAAGTAGTTGGC | 59.533 | 44.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3693 | 4016 | 5.423610 | AGTCAGTGCACCTATCTGATAAAGT | 59.576 | 40.000 | 14.63 | 0.00 | 39.77 | 2.66 |
3722 | 4045 | 7.650903 | GCAATATTTCTCTTTCCACATTCCATC | 59.349 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3730 | 4053 | 7.383102 | TCTTCTGCAATATTTCTCTTTCCAC | 57.617 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3746 | 4069 | 1.024271 | GTGTTGCACCTTCTTCTGCA | 58.976 | 50.000 | 0.00 | 0.00 | 41.68 | 4.41 |
3876 | 4199 | 7.162082 | ACTGTGGTTAAAATAGAGAAGACTGG | 58.838 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
4040 | 4384 | 5.481473 | ACCCAACAATGCTCAGAAAATATGT | 59.519 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4041 | 4385 | 5.969423 | ACCCAACAATGCTCAGAAAATATG | 58.031 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
4042 | 4386 | 7.178274 | TGTTACCCAACAATGCTCAGAAAATAT | 59.822 | 33.333 | 0.00 | 0.00 | 41.69 | 1.28 |
4043 | 4387 | 6.491745 | TGTTACCCAACAATGCTCAGAAAATA | 59.508 | 34.615 | 0.00 | 0.00 | 41.69 | 1.40 |
4044 | 4388 | 5.304101 | TGTTACCCAACAATGCTCAGAAAAT | 59.696 | 36.000 | 0.00 | 0.00 | 41.69 | 1.82 |
4045 | 4389 | 4.646945 | TGTTACCCAACAATGCTCAGAAAA | 59.353 | 37.500 | 0.00 | 0.00 | 41.69 | 2.29 |
4046 | 4390 | 4.211125 | TGTTACCCAACAATGCTCAGAAA | 58.789 | 39.130 | 0.00 | 0.00 | 41.69 | 2.52 |
4047 | 4391 | 3.826524 | TGTTACCCAACAATGCTCAGAA | 58.173 | 40.909 | 0.00 | 0.00 | 41.69 | 3.02 |
4048 | 4392 | 3.500448 | TGTTACCCAACAATGCTCAGA | 57.500 | 42.857 | 0.00 | 0.00 | 41.69 | 3.27 |
4057 | 4401 | 7.721842 | TCATTAGTTTCAGATTGTTACCCAACA | 59.278 | 33.333 | 0.00 | 0.00 | 42.93 | 3.33 |
4058 | 4402 | 8.106247 | TCATTAGTTTCAGATTGTTACCCAAC | 57.894 | 34.615 | 0.00 | 0.00 | 35.44 | 3.77 |
4059 | 4403 | 8.877864 | ATCATTAGTTTCAGATTGTTACCCAA | 57.122 | 30.769 | 0.00 | 0.00 | 37.49 | 4.12 |
4060 | 4404 | 8.877864 | AATCATTAGTTTCAGATTGTTACCCA | 57.122 | 30.769 | 0.00 | 0.00 | 30.13 | 4.51 |
4070 | 4414 | 5.774690 | AGTGCCCAAAATCATTAGTTTCAGA | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
4130 | 4474 | 6.317789 | TCCTCATAAAAGTGCAAAACTGAG | 57.682 | 37.500 | 0.00 | 0.00 | 39.81 | 3.35 |
4202 | 4546 | 5.829924 | ACAATCATGAATGGATGGTAACTCC | 59.170 | 40.000 | 15.10 | 0.00 | 37.61 | 3.85 |
4203 | 4547 | 6.949352 | ACAATCATGAATGGATGGTAACTC | 57.051 | 37.500 | 15.10 | 0.00 | 37.61 | 3.01 |
4204 | 4548 | 6.488006 | GCTACAATCATGAATGGATGGTAACT | 59.512 | 38.462 | 15.10 | 0.00 | 32.29 | 2.24 |
4205 | 4549 | 6.488006 | AGCTACAATCATGAATGGATGGTAAC | 59.512 | 38.462 | 15.10 | 0.00 | 32.29 | 2.50 |
4284 | 4638 | 8.634335 | TGTCTCCATTTCACAATAATTCAAGA | 57.366 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
4537 | 4891 | 7.817418 | TTCATAAACTGGTTCAAGCTTAACT | 57.183 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4738 | 5092 | 2.049526 | CGCGTGTCCACAGCTACA | 60.050 | 61.111 | 0.00 | 0.00 | 0.00 | 2.74 |
4780 | 5134 | 5.232463 | ACTCAATCGCTTCCGTACTTTTTA | 58.768 | 37.500 | 0.00 | 0.00 | 35.54 | 1.52 |
4898 | 5252 | 8.682936 | ATATTCTTCCAAACTATGCCTACTTG | 57.317 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
5047 | 5402 | 5.906113 | ATGCCGGACTATACTTCTATCTG | 57.094 | 43.478 | 5.05 | 0.00 | 0.00 | 2.90 |
5097 | 5452 | 5.185635 | ACATGGCTTTACATACATTTGCACT | 59.814 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5168 | 5523 | 8.615211 | TGCAGTATGAATGACATTTAGTTCATC | 58.385 | 33.333 | 1.39 | 0.00 | 40.59 | 2.92 |
5186 | 5541 | 2.668457 | GACCAAACGAGTCTGCAGTATG | 59.332 | 50.000 | 14.67 | 5.09 | 40.87 | 2.39 |
5195 | 5550 | 3.139077 | ACTTTCATGGACCAAACGAGTC | 58.861 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
5302 | 6791 | 8.583810 | TTTACTTATATAGTTCACCGTGATGC | 57.416 | 34.615 | 1.09 | 0.00 | 38.33 | 3.91 |
5308 | 6797 | 7.919313 | TCGCTTTTACTTATATAGTTCACCG | 57.081 | 36.000 | 0.00 | 0.00 | 38.33 | 4.94 |
5357 | 6846 | 4.261197 | GGTGTGGCAGTTACTTTTCTCAAG | 60.261 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
5359 | 6848 | 3.211045 | GGTGTGGCAGTTACTTTTCTCA | 58.789 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
5360 | 6849 | 3.003378 | GTGGTGTGGCAGTTACTTTTCTC | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
5371 | 6860 | 3.125316 | CAAAAAGATTGTGGTGTGGCAG | 58.875 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
5379 | 6868 | 8.481974 | TCAATAATGATGCAAAAAGATTGTGG | 57.518 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
5382 | 6871 | 9.749490 | GTGTTCAATAATGATGCAAAAAGATTG | 57.251 | 29.630 | 0.00 | 0.00 | 34.96 | 2.67 |
5384 | 6873 | 9.661563 | ATGTGTTCAATAATGATGCAAAAAGAT | 57.338 | 25.926 | 0.00 | 0.00 | 34.96 | 2.40 |
5386 | 6875 | 8.927721 | TGATGTGTTCAATAATGATGCAAAAAG | 58.072 | 29.630 | 0.00 | 0.00 | 34.96 | 2.27 |
5402 | 6892 | 7.514784 | AATTCAACAAGATCTGATGTGTTCA | 57.485 | 32.000 | 7.41 | 0.00 | 31.98 | 3.18 |
5436 | 6926 | 7.441864 | GTTGTTTAAACTTCAAACCTGAAACG | 58.558 | 34.615 | 18.72 | 0.00 | 41.05 | 3.60 |
5443 | 6933 | 7.750014 | TGTCTAACGTTGTTTAAACTTCAAACC | 59.250 | 33.333 | 18.72 | 3.02 | 35.46 | 3.27 |
5444 | 6934 | 8.658171 | TGTCTAACGTTGTTTAAACTTCAAAC | 57.342 | 30.769 | 18.72 | 13.03 | 36.60 | 2.93 |
5446 | 6936 | 8.452534 | ACATGTCTAACGTTGTTTAAACTTCAA | 58.547 | 29.630 | 18.72 | 2.98 | 0.00 | 2.69 |
5447 | 6937 | 7.976826 | ACATGTCTAACGTTGTTTAAACTTCA | 58.023 | 30.769 | 18.72 | 1.08 | 0.00 | 3.02 |
5448 | 6938 | 8.831000 | AACATGTCTAACGTTGTTTAAACTTC | 57.169 | 30.769 | 18.72 | 10.62 | 0.00 | 3.01 |
5450 | 6940 | 9.925268 | CTAAACATGTCTAACGTTGTTTAAACT | 57.075 | 29.630 | 18.72 | 1.35 | 38.08 | 2.66 |
5451 | 6941 | 9.706846 | ACTAAACATGTCTAACGTTGTTTAAAC | 57.293 | 29.630 | 11.99 | 11.54 | 38.08 | 2.01 |
5453 | 6943 | 9.919348 | GAACTAAACATGTCTAACGTTGTTTAA | 57.081 | 29.630 | 11.99 | 1.71 | 38.08 | 1.52 |
5454 | 6944 | 9.096160 | TGAACTAAACATGTCTAACGTTGTTTA | 57.904 | 29.630 | 11.99 | 14.65 | 37.81 | 2.01 |
5455 | 6945 | 7.976826 | TGAACTAAACATGTCTAACGTTGTTT | 58.023 | 30.769 | 11.99 | 14.29 | 39.10 | 2.83 |
5456 | 6946 | 7.542534 | TGAACTAAACATGTCTAACGTTGTT | 57.457 | 32.000 | 11.99 | 2.82 | 31.26 | 2.83 |
5457 | 6947 | 6.292703 | GCTGAACTAAACATGTCTAACGTTGT | 60.293 | 38.462 | 11.99 | 0.00 | 0.00 | 3.32 |
5458 | 6948 | 6.071463 | GCTGAACTAAACATGTCTAACGTTG | 58.929 | 40.000 | 11.99 | 0.97 | 0.00 | 4.10 |
5459 | 6949 | 5.178809 | GGCTGAACTAAACATGTCTAACGTT | 59.821 | 40.000 | 5.88 | 5.88 | 0.00 | 3.99 |
5460 | 6950 | 4.689345 | GGCTGAACTAAACATGTCTAACGT | 59.311 | 41.667 | 0.00 | 0.00 | 0.00 | 3.99 |
5461 | 6951 | 4.092968 | GGGCTGAACTAAACATGTCTAACG | 59.907 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
5462 | 6952 | 5.001232 | TGGGCTGAACTAAACATGTCTAAC | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
5466 | 6956 | 3.428045 | GCATGGGCTGAACTAAACATGTC | 60.428 | 47.826 | 0.00 | 0.00 | 38.29 | 3.06 |
5470 | 6960 | 1.164411 | CGCATGGGCTGAACTAAACA | 58.836 | 50.000 | 0.00 | 0.00 | 38.10 | 2.83 |
5474 | 6964 | 0.613260 | AACTCGCATGGGCTGAACTA | 59.387 | 50.000 | 4.59 | 0.00 | 38.10 | 2.24 |
5476 | 6966 | 0.598065 | AAAACTCGCATGGGCTGAAC | 59.402 | 50.000 | 4.59 | 0.00 | 38.10 | 3.18 |
5495 | 6985 | 2.283101 | GAACCCACCATGCAGGCA | 60.283 | 61.111 | 0.00 | 0.00 | 43.14 | 4.75 |
5500 | 6990 | 1.024579 | ACGAATCGAACCCACCATGC | 61.025 | 55.000 | 10.55 | 0.00 | 0.00 | 4.06 |
5502 | 6992 | 1.024579 | GCACGAATCGAACCCACCAT | 61.025 | 55.000 | 10.55 | 0.00 | 0.00 | 3.55 |
5504 | 6994 | 1.024579 | ATGCACGAATCGAACCCACC | 61.025 | 55.000 | 10.55 | 0.00 | 0.00 | 4.61 |
5512 | 7002 | 3.443037 | AGAGAAGAGAATGCACGAATCG | 58.557 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
5534 | 7024 | 1.658686 | CGGCTAGAAGGAGACGTGCT | 61.659 | 60.000 | 0.00 | 0.00 | 43.29 | 4.40 |
5578 | 7085 | 2.819284 | GGATTGGGTAGGCTCCGGG | 61.819 | 68.421 | 0.00 | 0.00 | 0.00 | 5.73 |
5579 | 7086 | 2.819284 | GGGATTGGGTAGGCTCCGG | 61.819 | 68.421 | 0.00 | 0.00 | 0.00 | 5.14 |
5580 | 7087 | 1.632018 | TTGGGATTGGGTAGGCTCCG | 61.632 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5594 | 7101 | 3.948719 | GTGGGGCGACACTTGGGA | 61.949 | 66.667 | 0.00 | 0.00 | 38.32 | 4.37 |
5611 | 7118 | 3.321968 | TGATATGAATGTGTCGGGAGGAG | 59.678 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
5612 | 7119 | 3.304829 | TGATATGAATGTGTCGGGAGGA | 58.695 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
5613 | 7120 | 3.555795 | CCTGATATGAATGTGTCGGGAGG | 60.556 | 52.174 | 0.00 | 0.00 | 39.05 | 4.30 |
5614 | 7121 | 3.070159 | ACCTGATATGAATGTGTCGGGAG | 59.930 | 47.826 | 6.12 | 0.00 | 39.05 | 4.30 |
5615 | 7122 | 3.038280 | ACCTGATATGAATGTGTCGGGA | 58.962 | 45.455 | 6.12 | 0.00 | 39.05 | 5.14 |
5616 | 7123 | 3.133691 | CACCTGATATGAATGTGTCGGG | 58.866 | 50.000 | 0.00 | 0.00 | 41.80 | 5.14 |
5617 | 7124 | 3.133691 | CCACCTGATATGAATGTGTCGG | 58.866 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5618 | 7125 | 4.053983 | CTCCACCTGATATGAATGTGTCG | 58.946 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
5619 | 7126 | 4.384056 | CCTCCACCTGATATGAATGTGTC | 58.616 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
5620 | 7127 | 3.137176 | CCCTCCACCTGATATGAATGTGT | 59.863 | 47.826 | 0.00 | 0.00 | 0.00 | 3.72 |
5621 | 7128 | 3.392285 | TCCCTCCACCTGATATGAATGTG | 59.608 | 47.826 | 0.00 | 0.00 | 0.00 | 3.21 |
5622 | 7129 | 3.649981 | CTCCCTCCACCTGATATGAATGT | 59.350 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
5623 | 7130 | 3.008813 | CCTCCCTCCACCTGATATGAATG | 59.991 | 52.174 | 0.00 | 0.00 | 0.00 | 2.67 |
5624 | 7131 | 3.254960 | CCTCCCTCCACCTGATATGAAT | 58.745 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5625 | 7132 | 2.694397 | CCTCCCTCCACCTGATATGAA | 58.306 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
5626 | 7133 | 1.132721 | CCCTCCCTCCACCTGATATGA | 60.133 | 57.143 | 0.00 | 0.00 | 0.00 | 2.15 |
5627 | 7134 | 1.356124 | CCCTCCCTCCACCTGATATG | 58.644 | 60.000 | 0.00 | 0.00 | 0.00 | 1.78 |
5628 | 7135 | 0.194587 | CCCCTCCCTCCACCTGATAT | 59.805 | 60.000 | 0.00 | 0.00 | 0.00 | 1.63 |
5629 | 7136 | 1.632164 | CCCCTCCCTCCACCTGATA | 59.368 | 63.158 | 0.00 | 0.00 | 0.00 | 2.15 |
5630 | 7137 | 2.374342 | CCCCTCCCTCCACCTGAT | 59.626 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
5631 | 7138 | 4.024984 | CCCCCTCCCTCCACCTGA | 62.025 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
5645 | 7152 | 2.696759 | CCAAATTCGACACGCCCCC | 61.697 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
5646 | 7153 | 2.696759 | CCCAAATTCGACACGCCCC | 61.697 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
5647 | 7154 | 0.674269 | TACCCAAATTCGACACGCCC | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
5648 | 7155 | 1.135888 | GTTACCCAAATTCGACACGCC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 5.68 |
5649 | 7156 | 1.802365 | AGTTACCCAAATTCGACACGC | 59.198 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
5650 | 7157 | 2.412325 | GCAGTTACCCAAATTCGACACG | 60.412 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
5651 | 7158 | 2.412325 | CGCAGTTACCCAAATTCGACAC | 60.412 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5652 | 7159 | 1.801771 | CGCAGTTACCCAAATTCGACA | 59.198 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
5653 | 7160 | 1.465187 | GCGCAGTTACCCAAATTCGAC | 60.465 | 52.381 | 0.30 | 0.00 | 0.00 | 4.20 |
5654 | 7161 | 0.800012 | GCGCAGTTACCCAAATTCGA | 59.200 | 50.000 | 0.30 | 0.00 | 0.00 | 3.71 |
5655 | 7162 | 0.179174 | GGCGCAGTTACCCAAATTCG | 60.179 | 55.000 | 10.83 | 0.00 | 0.00 | 3.34 |
5656 | 7163 | 0.172578 | GGGCGCAGTTACCCAAATTC | 59.827 | 55.000 | 10.83 | 0.00 | 46.22 | 2.17 |
5657 | 7164 | 2.272923 | GGGCGCAGTTACCCAAATT | 58.727 | 52.632 | 10.83 | 0.00 | 46.22 | 1.82 |
5658 | 7165 | 4.012138 | GGGCGCAGTTACCCAAAT | 57.988 | 55.556 | 10.83 | 0.00 | 46.22 | 2.32 |
5663 | 7170 | 2.038837 | GGAAGTGGGCGCAGTTACC | 61.039 | 63.158 | 22.37 | 19.54 | 0.00 | 2.85 |
5664 | 7171 | 2.038837 | GGGAAGTGGGCGCAGTTAC | 61.039 | 63.158 | 22.26 | 22.26 | 0.00 | 2.50 |
5665 | 7172 | 2.349755 | GGGAAGTGGGCGCAGTTA | 59.650 | 61.111 | 22.37 | 0.00 | 0.00 | 2.24 |
5666 | 7173 | 4.660938 | GGGGAAGTGGGCGCAGTT | 62.661 | 66.667 | 22.50 | 22.50 | 0.00 | 3.16 |
5675 | 7444 | 4.202472 | ACACTTAGAGAAAAGGGGGAAGTG | 60.202 | 45.833 | 9.64 | 9.64 | 44.90 | 3.16 |
5680 | 7449 | 4.565861 | GGAGAACACTTAGAGAAAAGGGGG | 60.566 | 50.000 | 0.00 | 0.00 | 33.98 | 5.40 |
5685 | 7454 | 7.310113 | GGAGATGAGGAGAACACTTAGAGAAAA | 60.310 | 40.741 | 0.00 | 0.00 | 0.00 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.