Multiple sequence alignment - TraesCS1A01G229600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G229600 chr1A 100.000 5100 0 0 703 5802 402236632 402231533 0.000000e+00 9419.0
1 TraesCS1A01G229600 chr1A 100.000 463 0 0 1 463 402237334 402236872 0.000000e+00 856.0
2 TraesCS1A01G229600 chr1D 95.531 3312 111 11 1960 5267 320722456 320725734 0.000000e+00 5262.0
3 TraesCS1A01G229600 chr1D 91.953 1019 60 9 713 1723 320721452 320722456 0.000000e+00 1408.0
4 TraesCS1A01G229600 chr1D 86.774 499 21 19 3 463 320720657 320721148 1.110000e-141 514.0
5 TraesCS1A01G229600 chr1D 94.656 131 6 1 5671 5800 320727530 320727660 9.860000e-48 202.0
6 TraesCS1A01G229600 chr1B 96.257 2084 70 5 1960 4040 433637798 433639876 0.000000e+00 3410.0
7 TraesCS1A01G229600 chr1B 95.848 1156 36 4 4137 5291 433639911 433641055 0.000000e+00 1858.0
8 TraesCS1A01G229600 chr1B 93.495 1030 55 7 703 1725 433636778 433637802 0.000000e+00 1520.0
9 TraesCS1A01G229600 chr1B 89.905 317 9 8 159 460 433635965 433636273 2.540000e-103 387.0
10 TraesCS1A01G229600 chr1B 85.380 171 8 7 3 172 433628793 433628947 1.670000e-35 161.0
11 TraesCS1A01G229600 chr1B 97.826 46 1 0 4056 4101 433639870 433639915 4.820000e-11 80.5
12 TraesCS1A01G229600 chr6B 87.266 267 23 8 1718 1975 228975436 228975172 1.580000e-75 294.0
13 TraesCS1A01G229600 chr6A 88.189 254 20 7 1727 1975 169515003 169514755 1.580000e-75 294.0
14 TraesCS1A01G229600 chr7A 89.868 227 17 4 1729 1949 490271187 490270961 2.650000e-73 287.0
15 TraesCS1A01G229600 chr7A 84.615 104 15 1 2912 3015 21350237 21350135 1.030000e-17 102.0
16 TraesCS1A01G229600 chr2B 88.066 243 26 3 1725 1967 667259427 667259188 9.520000e-73 285.0
17 TraesCS1A01G229600 chr2B 86.957 230 29 1 1731 1959 492706743 492706514 2.070000e-64 257.0
18 TraesCS1A01G229600 chr2B 84.066 182 11 9 2912 3091 471637483 471637318 6.020000e-35 159.0
19 TraesCS1A01G229600 chr2A 88.412 233 23 4 1727 1957 715268166 715268396 1.590000e-70 278.0
20 TraesCS1A01G229600 chr2A 84.615 182 17 8 2912 3093 672442044 672442214 2.780000e-38 171.0
21 TraesCS1A01G229600 chr2A 85.455 110 11 4 2912 3019 632386882 632386988 6.150000e-20 110.0
22 TraesCS1A01G229600 chrUn 88.261 230 22 3 1732 1960 49812522 49812297 2.660000e-68 270.0
23 TraesCS1A01G229600 chr4A 88.261 230 22 3 1732 1960 642959924 642959699 2.660000e-68 270.0
24 TraesCS1A01G229600 chr4A 84.360 211 19 7 2424 2631 178843376 178843177 1.650000e-45 195.0
25 TraesCS1A01G229600 chr5D 86.325 234 28 4 1728 1958 380692103 380691871 9.650000e-63 252.0
26 TraesCS1A01G229600 chr7B 84.358 179 16 3 2915 3093 610629007 610628841 1.290000e-36 165.0
27 TraesCS1A01G229600 chr3B 81.111 180 23 8 2912 3091 51816595 51816763 3.650000e-27 134.0
28 TraesCS1A01G229600 chr4D 84.404 109 12 4 2913 3019 214335550 214335655 1.030000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G229600 chr1A 402231533 402237334 5801 True 5137.5 9419 100.0000 1 5802 2 chr1A.!!$R1 5801
1 TraesCS1A01G229600 chr1D 320720657 320727660 7003 False 1846.5 5262 92.2285 3 5800 4 chr1D.!!$F1 5797
2 TraesCS1A01G229600 chr1B 433635965 433641055 5090 False 1451.1 3410 94.6662 159 5291 5 chr1B.!!$F2 5132


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 141 0.233848 GCGTTTGTTCGTTCCATCGT 59.766 50.000 0.00 0.00 0.00 3.73 F
1884 2206 0.034477 ACTAAAGTTGCCATCCCCGG 60.034 55.000 0.00 0.00 0.00 5.73 F
1932 2254 0.033366 AGGGCGGAATTGTTTTGTGC 59.967 50.000 0.00 0.00 0.00 4.57 F
1942 2264 0.109551 TGTTTTGTGCCACACGTGTG 60.110 50.000 36.13 36.13 45.23 3.82 F
2815 3137 0.248498 TGACTCGAGCGGAATTAGCG 60.248 55.000 13.61 0.00 40.04 4.26 F
2893 3215 1.604604 GGTGCAAACTACTGCTTGGA 58.395 50.000 0.00 0.00 43.07 3.53 F
3060 3382 1.912763 GCTGGTCCATTTTGGCCCA 60.913 57.895 0.00 0.00 44.42 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 2235 0.033366 GCACAAAACAATTCCGCCCT 59.967 50.000 0.0 0.0 0.00 5.19 R
3746 4069 1.024271 GTGTTGCACCTTCTTCTGCA 58.976 50.000 0.0 0.0 41.68 4.41 R
3876 4199 7.162082 ACTGTGGTTAAAATAGAGAAGACTGG 58.838 38.462 0.0 0.0 0.00 4.00 R
4040 4384 5.481473 ACCCAACAATGCTCAGAAAATATGT 59.519 36.000 0.0 0.0 0.00 2.29 R
4738 5092 2.049526 CGCGTGTCCACAGCTACA 60.050 61.111 0.0 0.0 0.00 2.74 R
4780 5134 5.232463 ACTCAATCGCTTCCGTACTTTTTA 58.768 37.500 0.0 0.0 35.54 1.52 R
5097 5452 5.185635 ACATGGCTTTACATACATTTGCACT 59.814 36.000 0.0 0.0 0.00 4.40 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.450807 GGATCCTAAAATAATTCGACACAAATG 57.549 33.333 3.84 0.00 0.00 2.32
90 91 1.197721 GCTTGTCATTTGTGGACGGAG 59.802 52.381 0.00 0.00 38.10 4.63
112 113 2.202570 GATTTGCTGCCTGCTGCG 60.203 61.111 14.86 0.00 45.60 5.18
121 122 3.022287 CCTGCTGCGTTTGTTCGT 58.978 55.556 0.00 0.00 0.00 3.85
125 137 1.353804 GCTGCGTTTGTTCGTTCCA 59.646 52.632 0.00 0.00 0.00 3.53
129 141 0.233848 GCGTTTGTTCGTTCCATCGT 59.766 50.000 0.00 0.00 0.00 3.73
130 142 1.456544 GCGTTTGTTCGTTCCATCGTA 59.543 47.619 0.00 0.00 0.00 3.43
134 146 3.646611 TTGTTCGTTCCATCGTACTCA 57.353 42.857 0.00 0.00 33.55 3.41
135 147 3.861276 TGTTCGTTCCATCGTACTCAT 57.139 42.857 0.00 0.00 33.55 2.90
138 150 1.202371 TCGTTCCATCGTACTCATGCC 60.202 52.381 0.00 0.00 0.00 4.40
163 175 6.283694 CCCAAGGGAAAGAAAAGAAAGAAAG 58.716 40.000 0.00 0.00 37.50 2.62
193 205 0.826715 ACCGGATCCAGTGTGATGAG 59.173 55.000 9.46 0.00 0.00 2.90
194 206 0.826715 CCGGATCCAGTGTGATGAGT 59.173 55.000 13.41 0.00 0.00 3.41
195 207 1.202463 CCGGATCCAGTGTGATGAGTC 60.202 57.143 13.41 0.00 0.00 3.36
196 208 1.478105 CGGATCCAGTGTGATGAGTCA 59.522 52.381 13.41 0.00 0.00 3.41
197 209 2.102084 CGGATCCAGTGTGATGAGTCAT 59.898 50.000 13.41 4.98 36.60 3.06
198 210 3.464907 GGATCCAGTGTGATGAGTCATG 58.535 50.000 11.20 0.00 36.60 3.07
199 211 2.391616 TCCAGTGTGATGAGTCATGC 57.608 50.000 11.20 3.88 36.60 4.06
277 289 4.906618 TCCGCTTGAATTTAGTTTCCTCT 58.093 39.130 0.00 0.00 0.00 3.69
279 291 4.938226 CCGCTTGAATTTAGTTTCCTCTCT 59.062 41.667 0.00 0.00 0.00 3.10
280 292 5.064071 CCGCTTGAATTTAGTTTCCTCTCTC 59.936 44.000 0.00 0.00 0.00 3.20
281 293 5.872070 CGCTTGAATTTAGTTTCCTCTCTCT 59.128 40.000 0.00 0.00 0.00 3.10
851 1159 1.102222 ACTAGTCCAGTCCCGCGATC 61.102 60.000 8.23 0.00 28.33 3.69
853 1161 2.561467 TAGTCCAGTCCCGCGATCCA 62.561 60.000 8.23 0.00 0.00 3.41
934 1242 1.873270 AATTTTTCGGGGAGGCGTGC 61.873 55.000 0.00 0.00 0.00 5.34
975 1283 3.827898 CCTCTGGTCTCCGCGGTC 61.828 72.222 27.15 16.32 0.00 4.79
1003 1311 1.881591 TTCTTGCTTTTTGGCCATGC 58.118 45.000 6.09 9.97 0.00 4.06
1173 1481 3.044305 GGTGACACGGCTGCTGAC 61.044 66.667 16.72 2.26 0.00 3.51
1181 1489 0.322975 ACGGCTGCTGACAATCTTCT 59.677 50.000 16.72 0.00 0.00 2.85
1183 1491 1.377536 GGCTGCTGACAATCTTCTCC 58.622 55.000 0.00 0.00 0.00 3.71
1239 1547 1.454663 GAGCTCATTTGGGCCCTCC 60.455 63.158 25.70 0.00 0.00 4.30
1248 1556 3.334054 GGGCCCTCCTGCTCTGTT 61.334 66.667 17.04 0.00 0.00 3.16
1323 1631 4.340617 TCCTGGGTAATTTCAATGTGGAC 58.659 43.478 0.00 0.00 0.00 4.02
1346 1654 1.743996 GCCGCTTCTCTTCCAAAGAT 58.256 50.000 0.00 0.00 36.82 2.40
1395 1707 5.102313 GCCCCTGTAAAAATTTCGATTCTG 58.898 41.667 0.00 0.00 0.00 3.02
1406 1718 7.615582 AAATTTCGATTCTGTCTTAGCATGA 57.384 32.000 0.00 0.00 0.00 3.07
1416 1728 6.602179 TCTGTCTTAGCATGATTTTGTTTCG 58.398 36.000 0.00 0.00 0.00 3.46
1417 1729 6.426633 TCTGTCTTAGCATGATTTTGTTTCGA 59.573 34.615 0.00 0.00 0.00 3.71
1562 1878 1.818674 CCCTTTTACACATGCCCTGTC 59.181 52.381 0.00 0.00 35.29 3.51
1663 1985 0.535553 TTGGGGTGCCTTACGTTGAC 60.536 55.000 0.00 0.00 0.00 3.18
1745 2067 9.821240 ATATTTATACCCAAATGATAAGTGCCA 57.179 29.630 0.00 0.00 30.84 4.92
1746 2068 6.952773 TTATACCCAAATGATAAGTGCCAC 57.047 37.500 0.00 0.00 0.00 5.01
1747 2069 3.168035 ACCCAAATGATAAGTGCCACA 57.832 42.857 0.00 0.00 0.00 4.17
1748 2070 2.825532 ACCCAAATGATAAGTGCCACAC 59.174 45.455 0.00 0.00 34.10 3.82
1749 2071 2.159393 CCCAAATGATAAGTGCCACACG 60.159 50.000 0.00 0.00 39.64 4.49
1750 2072 2.487762 CCAAATGATAAGTGCCACACGT 59.512 45.455 0.00 0.00 39.64 4.49
1751 2073 3.491356 CAAATGATAAGTGCCACACGTG 58.509 45.455 15.48 15.48 39.64 4.49
1752 2074 2.472695 ATGATAAGTGCCACACGTGT 57.527 45.000 17.22 17.22 39.64 4.49
1753 2075 1.507562 TGATAAGTGCCACACGTGTG 58.492 50.000 36.13 36.13 45.23 3.82
1761 2083 4.688192 CACACGTGTGGCACAAAG 57.312 55.556 35.65 20.89 44.16 2.77
1762 2084 1.800032 CACACGTGTGGCACAAAGT 59.200 52.632 35.65 21.57 44.16 2.66
1763 2085 1.010580 CACACGTGTGGCACAAAGTA 58.989 50.000 35.65 0.00 44.16 2.24
1764 2086 1.398739 CACACGTGTGGCACAAAGTAA 59.601 47.619 35.65 0.00 44.16 2.24
1765 2087 1.399089 ACACGTGTGGCACAAAGTAAC 59.601 47.619 23.90 7.78 44.16 2.50
1766 2088 1.398739 CACGTGTGGCACAAAGTAACA 59.601 47.619 23.90 0.00 44.16 2.41
1767 2089 1.399089 ACGTGTGGCACAAAGTAACAC 59.601 47.619 23.90 6.20 44.16 3.32
1768 2090 1.268335 CGTGTGGCACAAAGTAACACC 60.268 52.381 23.90 5.43 44.16 4.16
1769 2091 1.018148 TGTGGCACAAAGTAACACCG 58.982 50.000 19.74 0.00 44.16 4.94
1770 2092 0.317519 GTGGCACAAAGTAACACCGC 60.318 55.000 13.86 0.00 44.16 5.68
1771 2093 1.284715 GGCACAAAGTAACACCGCC 59.715 57.895 0.00 0.00 0.00 6.13
1772 2094 1.284715 GCACAAAGTAACACCGCCC 59.715 57.895 0.00 0.00 0.00 6.13
1773 2095 1.170290 GCACAAAGTAACACCGCCCT 61.170 55.000 0.00 0.00 0.00 5.19
1774 2096 0.591170 CACAAAGTAACACCGCCCTG 59.409 55.000 0.00 0.00 0.00 4.45
1775 2097 1.170290 ACAAAGTAACACCGCCCTGC 61.170 55.000 0.00 0.00 0.00 4.85
1776 2098 1.602605 AAAGTAACACCGCCCTGCC 60.603 57.895 0.00 0.00 0.00 4.85
1777 2099 3.894547 AAGTAACACCGCCCTGCCG 62.895 63.158 0.00 0.00 0.00 5.69
1778 2100 4.692475 GTAACACCGCCCTGCCGT 62.692 66.667 0.00 0.00 0.00 5.68
1779 2101 3.943691 TAACACCGCCCTGCCGTT 61.944 61.111 0.00 0.00 0.00 4.44
1780 2102 3.479127 TAACACCGCCCTGCCGTTT 62.479 57.895 0.00 0.00 0.00 3.60
1781 2103 2.962142 TAACACCGCCCTGCCGTTTT 62.962 55.000 0.00 0.00 0.00 2.43
1782 2104 3.601685 CACCGCCCTGCCGTTTTT 61.602 61.111 0.00 0.00 0.00 1.94
1783 2105 2.113562 ACCGCCCTGCCGTTTTTA 59.886 55.556 0.00 0.00 0.00 1.52
1784 2106 2.263021 ACCGCCCTGCCGTTTTTAC 61.263 57.895 0.00 0.00 0.00 2.01
1785 2107 2.262303 CCGCCCTGCCGTTTTTACA 61.262 57.895 0.00 0.00 0.00 2.41
1786 2108 1.655329 CGCCCTGCCGTTTTTACAA 59.345 52.632 0.00 0.00 0.00 2.41
1787 2109 0.662077 CGCCCTGCCGTTTTTACAAC 60.662 55.000 0.00 0.00 0.00 3.32
1788 2110 0.671796 GCCCTGCCGTTTTTACAACT 59.328 50.000 0.00 0.00 0.00 3.16
1789 2111 1.881324 GCCCTGCCGTTTTTACAACTA 59.119 47.619 0.00 0.00 0.00 2.24
1790 2112 2.293955 GCCCTGCCGTTTTTACAACTAA 59.706 45.455 0.00 0.00 0.00 2.24
1791 2113 3.243468 GCCCTGCCGTTTTTACAACTAAA 60.243 43.478 0.00 0.00 0.00 1.85
1792 2114 4.737055 GCCCTGCCGTTTTTACAACTAAAA 60.737 41.667 0.00 0.00 31.23 1.52
1793 2115 5.534407 CCCTGCCGTTTTTACAACTAAAAT 58.466 37.500 0.00 0.00 32.90 1.82
1794 2116 5.986741 CCCTGCCGTTTTTACAACTAAAATT 59.013 36.000 0.00 0.00 32.90 1.82
1795 2117 6.074034 CCCTGCCGTTTTTACAACTAAAATTG 60.074 38.462 0.00 0.00 32.90 2.32
1796 2118 6.275305 TGCCGTTTTTACAACTAAAATTGC 57.725 33.333 0.00 0.00 32.90 3.56
1797 2119 5.234543 TGCCGTTTTTACAACTAAAATTGCC 59.765 36.000 0.00 0.00 32.90 4.52
1798 2120 5.234543 GCCGTTTTTACAACTAAAATTGCCA 59.765 36.000 0.00 0.00 32.90 4.92
1799 2121 6.073494 GCCGTTTTTACAACTAAAATTGCCAT 60.073 34.615 0.00 0.00 32.90 4.40
1800 2122 7.116519 GCCGTTTTTACAACTAAAATTGCCATA 59.883 33.333 0.00 0.00 32.90 2.74
1801 2123 8.979574 CCGTTTTTACAACTAAAATTGCCATAA 58.020 29.630 0.00 0.00 32.90 1.90
1845 2167 9.533253 AAAAACTGAAACTTGTCATCCAAATAG 57.467 29.630 0.00 0.00 31.20 1.73
1846 2168 8.463930 AAACTGAAACTTGTCATCCAAATAGA 57.536 30.769 0.00 0.00 31.20 1.98
1847 2169 8.463930 AACTGAAACTTGTCATCCAAATAGAA 57.536 30.769 0.00 0.00 31.20 2.10
1848 2170 8.463930 ACTGAAACTTGTCATCCAAATAGAAA 57.536 30.769 0.00 0.00 31.20 2.52
1849 2171 8.571336 ACTGAAACTTGTCATCCAAATAGAAAG 58.429 33.333 0.00 0.00 31.20 2.62
1850 2172 8.463930 TGAAACTTGTCATCCAAATAGAAAGT 57.536 30.769 0.00 0.00 31.20 2.66
1851 2173 8.912988 TGAAACTTGTCATCCAAATAGAAAGTT 58.087 29.630 0.00 0.00 38.02 2.66
1852 2174 9.185192 GAAACTTGTCATCCAAATAGAAAGTTG 57.815 33.333 0.00 0.00 36.88 3.16
1853 2175 6.681777 ACTTGTCATCCAAATAGAAAGTTGC 58.318 36.000 0.00 0.00 31.20 4.17
1854 2176 5.643379 TGTCATCCAAATAGAAAGTTGCC 57.357 39.130 0.00 0.00 29.32 4.52
1855 2177 5.076182 TGTCATCCAAATAGAAAGTTGCCA 58.924 37.500 0.00 0.00 29.32 4.92
1856 2178 5.716228 TGTCATCCAAATAGAAAGTTGCCAT 59.284 36.000 0.00 0.00 29.32 4.40
1857 2179 6.889177 TGTCATCCAAATAGAAAGTTGCCATA 59.111 34.615 0.00 0.00 29.32 2.74
1858 2180 7.395772 TGTCATCCAAATAGAAAGTTGCCATAA 59.604 33.333 0.00 0.00 29.32 1.90
1859 2181 8.416329 GTCATCCAAATAGAAAGTTGCCATAAT 58.584 33.333 0.00 0.00 29.32 1.28
1860 2182 8.980596 TCATCCAAATAGAAAGTTGCCATAATT 58.019 29.630 0.00 0.00 29.32 1.40
1861 2183 9.252962 CATCCAAATAGAAAGTTGCCATAATTC 57.747 33.333 0.00 0.00 29.32 2.17
1862 2184 8.359875 TCCAAATAGAAAGTTGCCATAATTCA 57.640 30.769 0.00 0.00 29.32 2.57
1863 2185 8.250332 TCCAAATAGAAAGTTGCCATAATTCAC 58.750 33.333 0.00 0.00 29.32 3.18
1864 2186 8.034215 CCAAATAGAAAGTTGCCATAATTCACA 58.966 33.333 0.00 0.00 29.32 3.58
1865 2187 9.421806 CAAATAGAAAGTTGCCATAATTCACAA 57.578 29.630 0.00 0.00 0.00 3.33
1866 2188 8.986477 AATAGAAAGTTGCCATAATTCACAAC 57.014 30.769 0.00 0.00 42.08 3.32
1883 2205 1.834188 AACTAAAGTTGCCATCCCCG 58.166 50.000 0.00 0.00 36.80 5.73
1884 2206 0.034477 ACTAAAGTTGCCATCCCCGG 60.034 55.000 0.00 0.00 0.00 5.73
1885 2207 0.751643 CTAAAGTTGCCATCCCCGGG 60.752 60.000 15.80 15.80 0.00 5.73
1886 2208 1.502527 TAAAGTTGCCATCCCCGGGT 61.503 55.000 21.85 0.00 0.00 5.28
1887 2209 1.502527 AAAGTTGCCATCCCCGGGTA 61.503 55.000 21.85 2.85 0.00 3.69
1888 2210 1.502527 AAGTTGCCATCCCCGGGTAA 61.503 55.000 21.85 7.64 0.00 2.85
1889 2211 1.751544 GTTGCCATCCCCGGGTAAC 60.752 63.158 21.85 10.54 42.37 2.50
1890 2212 1.926489 TTGCCATCCCCGGGTAACT 60.926 57.895 21.85 0.00 0.00 2.24
1891 2213 0.620990 TTGCCATCCCCGGGTAACTA 60.621 55.000 21.85 0.00 0.00 2.24
1892 2214 0.620990 TGCCATCCCCGGGTAACTAA 60.621 55.000 21.85 0.00 0.00 2.24
1893 2215 0.547553 GCCATCCCCGGGTAACTAAA 59.452 55.000 21.85 0.00 0.00 1.85
1894 2216 1.476291 GCCATCCCCGGGTAACTAAAG 60.476 57.143 21.85 0.35 0.00 1.85
1895 2217 1.841919 CCATCCCCGGGTAACTAAAGT 59.158 52.381 21.85 0.00 0.00 2.66
1896 2218 2.240414 CCATCCCCGGGTAACTAAAGTT 59.760 50.000 21.85 0.39 41.73 2.66
1897 2219 3.275999 CATCCCCGGGTAACTAAAGTTG 58.724 50.000 21.85 2.73 38.90 3.16
1898 2220 1.003464 TCCCCGGGTAACTAAAGTTGC 59.997 52.381 21.85 4.10 38.90 4.17
1921 2243 4.563404 AAAAACGTCAGGGCGGAA 57.437 50.000 0.00 0.00 35.98 4.30
1922 2244 3.030415 AAAAACGTCAGGGCGGAAT 57.970 47.368 0.00 0.00 35.98 3.01
1923 2245 1.324383 AAAAACGTCAGGGCGGAATT 58.676 45.000 0.00 0.00 35.98 2.17
1924 2246 0.596082 AAAACGTCAGGGCGGAATTG 59.404 50.000 0.00 0.00 35.98 2.32
1925 2247 0.536460 AAACGTCAGGGCGGAATTGT 60.536 50.000 0.00 0.00 35.98 2.71
1926 2248 0.536460 AACGTCAGGGCGGAATTGTT 60.536 50.000 0.00 0.00 35.98 2.83
1927 2249 0.536460 ACGTCAGGGCGGAATTGTTT 60.536 50.000 0.00 0.00 35.98 2.83
1928 2250 0.596082 CGTCAGGGCGGAATTGTTTT 59.404 50.000 0.00 0.00 0.00 2.43
1929 2251 1.665735 CGTCAGGGCGGAATTGTTTTG 60.666 52.381 0.00 0.00 0.00 2.44
1930 2252 1.339929 GTCAGGGCGGAATTGTTTTGT 59.660 47.619 0.00 0.00 0.00 2.83
1931 2253 1.339610 TCAGGGCGGAATTGTTTTGTG 59.660 47.619 0.00 0.00 0.00 3.33
1932 2254 0.033366 AGGGCGGAATTGTTTTGTGC 59.967 50.000 0.00 0.00 0.00 4.57
1933 2255 0.948623 GGGCGGAATTGTTTTGTGCC 60.949 55.000 0.00 0.00 40.25 5.01
1934 2256 0.249657 GGCGGAATTGTTTTGTGCCA 60.250 50.000 0.00 0.00 40.66 4.92
1935 2257 0.858583 GCGGAATTGTTTTGTGCCAC 59.141 50.000 0.00 0.00 0.00 5.01
1936 2258 1.804372 GCGGAATTGTTTTGTGCCACA 60.804 47.619 0.00 0.00 0.00 4.17
1937 2259 1.857837 CGGAATTGTTTTGTGCCACAC 59.142 47.619 0.00 0.00 34.56 3.82
1938 2260 1.857837 GGAATTGTTTTGTGCCACACG 59.142 47.619 0.00 0.00 37.14 4.49
1939 2261 2.535331 GAATTGTTTTGTGCCACACGT 58.465 42.857 0.00 0.00 37.14 4.49
1940 2262 1.919918 ATTGTTTTGTGCCACACGTG 58.080 45.000 15.48 15.48 37.14 4.49
1941 2263 0.598562 TTGTTTTGTGCCACACGTGT 59.401 45.000 17.22 17.22 37.14 4.49
1942 2264 0.109551 TGTTTTGTGCCACACGTGTG 60.110 50.000 36.13 36.13 45.23 3.82
1952 2274 2.078849 CACACGTGTGGCTCTTATCA 57.921 50.000 35.65 0.00 42.10 2.15
1953 2275 1.995484 CACACGTGTGGCTCTTATCAG 59.005 52.381 35.65 10.09 42.10 2.90
1954 2276 1.066858 ACACGTGTGGCTCTTATCAGG 60.067 52.381 22.71 0.00 34.19 3.86
1955 2277 0.537188 ACGTGTGGCTCTTATCAGGG 59.463 55.000 0.00 0.00 0.00 4.45
1956 2278 0.537188 CGTGTGGCTCTTATCAGGGT 59.463 55.000 0.00 0.00 0.00 4.34
1957 2279 1.471676 CGTGTGGCTCTTATCAGGGTC 60.472 57.143 0.00 0.00 0.00 4.46
1958 2280 1.134371 GTGTGGCTCTTATCAGGGTCC 60.134 57.143 0.00 0.00 0.00 4.46
2071 2393 1.255882 AGTGACAGCTGAGTGGAGAG 58.744 55.000 23.35 0.00 0.00 3.20
2380 2702 6.767902 TGGTTTGACATCTATCCTTATTCTGC 59.232 38.462 0.00 0.00 0.00 4.26
2386 2708 3.317406 TCTATCCTTATTCTGCAGGGCA 58.683 45.455 15.13 0.00 36.92 5.36
2724 3046 9.999660 AGTTTTAGGTTACCTCTTTTCTAGAAG 57.000 33.333 7.39 0.00 34.61 2.85
2815 3137 0.248498 TGACTCGAGCGGAATTAGCG 60.248 55.000 13.61 0.00 40.04 4.26
2893 3215 1.604604 GGTGCAAACTACTGCTTGGA 58.395 50.000 0.00 0.00 43.07 3.53
2991 3313 7.781324 AAATTATTGAAGACTGGTGGTGAAT 57.219 32.000 0.00 0.00 0.00 2.57
3012 3334 2.621556 TTGGGCCCTAAGAGCAAAAT 57.378 45.000 25.70 0.00 0.00 1.82
3060 3382 1.912763 GCTGGTCCATTTTGGCCCA 60.913 57.895 0.00 0.00 44.42 5.36
3084 3407 3.370846 CCAAAGATGTGGATGTAGCTCCA 60.371 47.826 0.00 0.00 43.09 3.86
3376 3699 5.863397 TGCTTGTAATTTCTAATGCAGTTGC 59.137 36.000 0.00 0.00 42.50 4.17
3434 3757 3.442076 ACCGGAGTCTAAGGAAACAGAT 58.558 45.455 9.46 0.00 0.00 2.90
3543 3866 2.512485 CAAGGTTTGCAGCAATCACA 57.488 45.000 9.12 0.00 0.00 3.58
3616 3939 3.907474 TCTTGTAAGAAGGATGGACACCA 59.093 43.478 0.00 0.00 32.49 4.17
3722 4045 4.098501 TCAGATAGGTGCACTGACTATGTG 59.901 45.833 22.14 22.14 38.87 3.21
3730 4053 4.034858 GTGCACTGACTATGTGATGGAATG 59.965 45.833 10.32 0.00 37.60 2.67
3746 4069 8.689972 GTGATGGAATGTGGAAAGAGAAATATT 58.310 33.333 0.00 0.00 0.00 1.28
3825 4148 6.713762 TTGGTGCAGATAATCCCTTAATTG 57.286 37.500 0.00 0.00 0.00 2.32
3876 4199 7.119846 ACAAAGAAGTAAGCTCATGTTCCATAC 59.880 37.037 0.00 0.00 0.00 2.39
3879 4202 5.028549 AGTAAGCTCATGTTCCATACCAG 57.971 43.478 0.00 0.00 0.00 4.00
3900 4223 7.162082 ACCAGTCTTCTCTATTTTAACCACAG 58.838 38.462 0.00 0.00 0.00 3.66
3902 4225 7.661847 CCAGTCTTCTCTATTTTAACCACAGTT 59.338 37.037 0.00 0.00 40.15 3.16
4022 4347 5.028375 GCAGGTCTTTGTAATTGTAATCGC 58.972 41.667 0.00 0.00 0.00 4.58
4040 4384 4.265904 TCGCCTTGAAGTAGATTGTTGA 57.734 40.909 0.00 0.00 0.00 3.18
4041 4385 3.994392 TCGCCTTGAAGTAGATTGTTGAC 59.006 43.478 0.00 0.00 0.00 3.18
4042 4386 3.745975 CGCCTTGAAGTAGATTGTTGACA 59.254 43.478 0.00 0.00 0.00 3.58
4043 4387 4.393062 CGCCTTGAAGTAGATTGTTGACAT 59.607 41.667 0.00 0.00 0.00 3.06
4044 4388 5.580691 CGCCTTGAAGTAGATTGTTGACATA 59.419 40.000 0.00 0.00 0.00 2.29
4045 4389 6.258727 CGCCTTGAAGTAGATTGTTGACATAT 59.741 38.462 0.00 0.00 0.00 1.78
4046 4390 7.201644 CGCCTTGAAGTAGATTGTTGACATATT 60.202 37.037 0.00 0.00 0.00 1.28
4047 4391 8.462016 GCCTTGAAGTAGATTGTTGACATATTT 58.538 33.333 0.00 0.00 0.00 1.40
4054 4398 8.887717 AGTAGATTGTTGACATATTTTCTGAGC 58.112 33.333 0.00 0.00 0.00 4.26
4055 4399 7.692460 AGATTGTTGACATATTTTCTGAGCA 57.308 32.000 0.00 0.00 0.00 4.26
4056 4400 8.289939 AGATTGTTGACATATTTTCTGAGCAT 57.710 30.769 0.00 0.00 0.00 3.79
4057 4401 8.746530 AGATTGTTGACATATTTTCTGAGCATT 58.253 29.630 0.00 0.00 0.00 3.56
4058 4402 8.697846 ATTGTTGACATATTTTCTGAGCATTG 57.302 30.769 0.00 0.00 0.00 2.82
4059 4403 7.218228 TGTTGACATATTTTCTGAGCATTGT 57.782 32.000 0.00 0.00 0.00 2.71
4060 4404 7.660112 TGTTGACATATTTTCTGAGCATTGTT 58.340 30.769 0.00 0.00 0.00 2.83
4061 4405 7.595875 TGTTGACATATTTTCTGAGCATTGTTG 59.404 33.333 0.00 0.00 0.00 3.33
4191 4535 5.496556 TCATATGATTCGTGTTGTTTCCCT 58.503 37.500 0.00 0.00 0.00 4.20
4197 4541 5.533154 TGATTCGTGTTGTTTCCCTTATGTT 59.467 36.000 0.00 0.00 0.00 2.71
4198 4542 5.838531 TTCGTGTTGTTTCCCTTATGTTT 57.161 34.783 0.00 0.00 0.00 2.83
4199 4543 5.838531 TCGTGTTGTTTCCCTTATGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
4200 4544 5.823353 TCGTGTTGTTTCCCTTATGTTTTC 58.177 37.500 0.00 0.00 0.00 2.29
4201 4545 5.591067 TCGTGTTGTTTCCCTTATGTTTTCT 59.409 36.000 0.00 0.00 0.00 2.52
4202 4546 5.685511 CGTGTTGTTTCCCTTATGTTTTCTG 59.314 40.000 0.00 0.00 0.00 3.02
4203 4547 5.983118 GTGTTGTTTCCCTTATGTTTTCTGG 59.017 40.000 0.00 0.00 0.00 3.86
4204 4548 5.894393 TGTTGTTTCCCTTATGTTTTCTGGA 59.106 36.000 0.00 0.00 0.00 3.86
4205 4549 6.040391 TGTTGTTTCCCTTATGTTTTCTGGAG 59.960 38.462 0.00 0.00 0.00 3.86
4284 4638 7.039504 ACCATGCATCAGATTTGTAGTTTTCTT 60.040 33.333 0.00 0.00 0.00 2.52
4365 4719 7.935338 ACACACTTTTAGCTGATGATTTTTG 57.065 32.000 0.00 0.00 0.00 2.44
4366 4720 6.925165 ACACACTTTTAGCTGATGATTTTTGG 59.075 34.615 0.00 0.00 0.00 3.28
4537 4891 4.150897 AGAAACTGTTGCAAGACAGGTA 57.849 40.909 19.94 0.00 46.45 3.08
4738 5092 7.920160 TTTGAAGAATGAAAAGCCTGTTTTT 57.080 28.000 0.00 0.00 33.19 1.94
4780 5134 0.883370 GCCAACGAGTCCGAAAACCT 60.883 55.000 0.00 0.00 39.50 3.50
5029 5384 4.270808 GCAAATTGTTCTTGTGAAACCTGG 59.729 41.667 0.00 0.00 34.36 4.45
5097 5452 3.472652 AGTTGTTTCGTCATTGCCAGTA 58.527 40.909 0.00 0.00 0.00 2.74
5168 5523 2.351418 TCGGCAAGCAAATATGAAGTCG 59.649 45.455 0.00 0.00 0.00 4.18
5186 5541 7.963981 TGAAGTCGATGAACTAAATGTCATTC 58.036 34.615 0.00 0.00 0.00 2.67
5195 5550 7.977904 TGAACTAAATGTCATTCATACTGCAG 58.022 34.615 13.48 13.48 35.48 4.41
5312 6801 0.179181 ACGTACGTAGCATCACGGTG 60.179 55.000 21.41 0.56 46.12 4.94
5345 6834 6.870971 AGTAAAAGCGAAAAGTTACCATGA 57.129 33.333 0.00 0.00 0.00 3.07
5346 6835 6.665465 AGTAAAAGCGAAAAGTTACCATGAC 58.335 36.000 0.00 0.00 0.00 3.06
5347 6836 5.767816 AAAAGCGAAAAGTTACCATGACT 57.232 34.783 0.00 0.00 0.00 3.41
5348 6837 5.358298 AAAGCGAAAAGTTACCATGACTC 57.642 39.130 0.00 0.00 0.00 3.36
5349 6838 4.002906 AGCGAAAAGTTACCATGACTCA 57.997 40.909 0.00 0.00 0.00 3.41
5379 6868 4.335594 ACTTGAGAAAAGTAACTGCCACAC 59.664 41.667 0.00 0.00 0.00 3.82
5382 6871 2.949644 AGAAAAGTAACTGCCACACCAC 59.050 45.455 0.00 0.00 0.00 4.16
5384 6873 2.428544 AAGTAACTGCCACACCACAA 57.571 45.000 0.00 0.00 0.00 3.33
5386 6875 2.504367 AGTAACTGCCACACCACAATC 58.496 47.619 0.00 0.00 0.00 2.67
5402 6892 7.879160 ACACCACAATCTTTTTGCATCATTATT 59.121 29.630 0.00 0.00 0.00 1.40
5418 6908 8.350722 GCATCATTATTGAACACATCAGATCTT 58.649 33.333 0.00 0.00 39.77 2.40
5436 6926 8.950210 TCAGATCTTGTTGAATTTCTATCCAAC 58.050 33.333 0.00 0.00 39.29 3.77
5443 6933 7.359595 TGTTGAATTTCTATCCAACGTTTCAG 58.640 34.615 0.00 0.00 41.08 3.02
5444 6934 6.494893 TGAATTTCTATCCAACGTTTCAGG 57.505 37.500 0.00 0.00 0.00 3.86
5446 6936 6.488683 TGAATTTCTATCCAACGTTTCAGGTT 59.511 34.615 0.00 0.00 0.00 3.50
5447 6937 6.894339 ATTTCTATCCAACGTTTCAGGTTT 57.106 33.333 0.00 0.00 0.00 3.27
5448 6938 5.682943 TTCTATCCAACGTTTCAGGTTTG 57.317 39.130 0.00 0.00 0.00 2.93
5449 6939 4.963373 TCTATCCAACGTTTCAGGTTTGA 58.037 39.130 0.00 0.00 0.00 2.69
5450 6940 5.369833 TCTATCCAACGTTTCAGGTTTGAA 58.630 37.500 0.00 0.00 41.44 2.69
5451 6941 4.568152 ATCCAACGTTTCAGGTTTGAAG 57.432 40.909 0.00 0.00 43.76 3.02
5452 6942 3.349022 TCCAACGTTTCAGGTTTGAAGT 58.651 40.909 0.00 0.00 43.76 3.01
5453 6943 3.759618 TCCAACGTTTCAGGTTTGAAGTT 59.240 39.130 0.00 0.00 43.76 2.66
5454 6944 4.218852 TCCAACGTTTCAGGTTTGAAGTTT 59.781 37.500 0.00 0.00 43.76 2.66
5455 6945 5.415077 TCCAACGTTTCAGGTTTGAAGTTTA 59.585 36.000 0.00 0.00 43.76 2.01
5456 6946 6.072064 TCCAACGTTTCAGGTTTGAAGTTTAA 60.072 34.615 0.00 0.00 43.76 1.52
5457 6947 6.586844 CCAACGTTTCAGGTTTGAAGTTTAAA 59.413 34.615 0.00 0.00 43.76 1.52
5458 6948 7.411049 CCAACGTTTCAGGTTTGAAGTTTAAAC 60.411 37.037 13.39 13.39 43.76 2.01
5459 6949 6.679843 ACGTTTCAGGTTTGAAGTTTAAACA 58.320 32.000 20.83 2.48 43.76 2.83
5460 6950 7.146648 ACGTTTCAGGTTTGAAGTTTAAACAA 58.853 30.769 20.83 7.68 43.76 2.83
5461 6951 7.115236 ACGTTTCAGGTTTGAAGTTTAAACAAC 59.885 33.333 20.83 14.22 43.76 3.32
5462 6952 7.441864 GTTTCAGGTTTGAAGTTTAAACAACG 58.558 34.615 20.83 10.86 43.76 4.10
5466 6956 7.964011 TCAGGTTTGAAGTTTAAACAACGTTAG 59.036 33.333 20.83 6.93 39.24 2.34
5470 6960 9.281075 GTTTGAAGTTTAAACAACGTTAGACAT 57.719 29.630 20.06 0.00 37.82 3.06
5474 6964 9.281075 GAAGTTTAAACAACGTTAGACATGTTT 57.719 29.630 20.06 15.68 45.18 2.83
5476 6966 9.925268 AGTTTAAACAACGTTAGACATGTTTAG 57.075 29.630 20.06 0.00 44.41 1.85
5495 6985 0.598065 GTTCAGCCCATGCGAGTTTT 59.402 50.000 0.00 0.00 44.33 2.43
5500 6990 1.213537 CCCATGCGAGTTTTGCCTG 59.786 57.895 0.00 0.00 0.00 4.85
5502 6992 1.286570 CATGCGAGTTTTGCCTGCA 59.713 52.632 0.00 0.00 40.23 4.41
5504 6994 0.108992 ATGCGAGTTTTGCCTGCATG 60.109 50.000 0.00 0.00 44.02 4.06
5512 7002 1.470996 TTTGCCTGCATGGTGGGTTC 61.471 55.000 0.00 0.00 38.35 3.62
5534 7024 4.335594 TCGATTCGTGCATTCTCTTCTCTA 59.664 41.667 5.89 0.00 0.00 2.43
5538 7028 2.857152 CGTGCATTCTCTTCTCTAGCAC 59.143 50.000 0.00 0.00 45.23 4.40
5594 7101 2.772622 CCCCGGAGCCTACCCAAT 60.773 66.667 0.73 0.00 0.00 3.16
5601 7108 0.919710 GAGCCTACCCAATCCCAAGT 59.080 55.000 0.00 0.00 0.00 3.16
5602 7109 0.625849 AGCCTACCCAATCCCAAGTG 59.374 55.000 0.00 0.00 0.00 3.16
5611 7118 2.764637 AATCCCAAGTGTCGCCCCAC 62.765 60.000 0.00 0.00 35.53 4.61
5613 7120 2.358737 CCAAGTGTCGCCCCACTC 60.359 66.667 3.61 0.00 44.74 3.51
5614 7121 2.358737 CAAGTGTCGCCCCACTCC 60.359 66.667 3.61 0.00 44.74 3.85
5615 7122 2.526873 AAGTGTCGCCCCACTCCT 60.527 61.111 3.61 0.00 44.74 3.69
5616 7123 2.584391 AAGTGTCGCCCCACTCCTC 61.584 63.158 3.61 0.00 44.74 3.71
5617 7124 4.083862 GTGTCGCCCCACTCCTCC 62.084 72.222 0.00 0.00 32.50 4.30
5623 7130 3.391382 CCCCACTCCTCCCGACAC 61.391 72.222 0.00 0.00 0.00 3.67
5624 7131 2.603473 CCCACTCCTCCCGACACA 60.603 66.667 0.00 0.00 0.00 3.72
5625 7132 1.990060 CCCACTCCTCCCGACACAT 60.990 63.158 0.00 0.00 0.00 3.21
5626 7133 1.553690 CCCACTCCTCCCGACACATT 61.554 60.000 0.00 0.00 0.00 2.71
5627 7134 0.108138 CCACTCCTCCCGACACATTC 60.108 60.000 0.00 0.00 0.00 2.67
5628 7135 0.608130 CACTCCTCCCGACACATTCA 59.392 55.000 0.00 0.00 0.00 2.57
5629 7136 1.208052 CACTCCTCCCGACACATTCAT 59.792 52.381 0.00 0.00 0.00 2.57
5630 7137 2.430694 CACTCCTCCCGACACATTCATA 59.569 50.000 0.00 0.00 0.00 2.15
5631 7138 3.070159 CACTCCTCCCGACACATTCATAT 59.930 47.826 0.00 0.00 0.00 1.78
5632 7139 3.322254 ACTCCTCCCGACACATTCATATC 59.678 47.826 0.00 0.00 0.00 1.63
5633 7140 3.304829 TCCTCCCGACACATTCATATCA 58.695 45.455 0.00 0.00 0.00 2.15
5634 7141 3.321968 TCCTCCCGACACATTCATATCAG 59.678 47.826 0.00 0.00 0.00 2.90
5635 7142 3.555795 CCTCCCGACACATTCATATCAGG 60.556 52.174 0.00 0.00 0.00 3.86
5636 7143 3.038280 TCCCGACACATTCATATCAGGT 58.962 45.455 0.00 0.00 0.00 4.00
5637 7144 3.133691 CCCGACACATTCATATCAGGTG 58.866 50.000 0.00 0.00 35.66 4.00
5638 7145 3.133691 CCGACACATTCATATCAGGTGG 58.866 50.000 0.00 0.00 33.91 4.61
5639 7146 3.181466 CCGACACATTCATATCAGGTGGA 60.181 47.826 0.00 0.00 33.91 4.02
5640 7147 4.053983 CGACACATTCATATCAGGTGGAG 58.946 47.826 0.00 0.00 33.91 3.86
5641 7148 4.384056 GACACATTCATATCAGGTGGAGG 58.616 47.826 0.00 0.00 33.91 4.30
5642 7149 3.137176 ACACATTCATATCAGGTGGAGGG 59.863 47.826 0.00 0.00 33.91 4.30
5643 7150 3.392285 CACATTCATATCAGGTGGAGGGA 59.608 47.826 0.00 0.00 0.00 4.20
5644 7151 3.649981 ACATTCATATCAGGTGGAGGGAG 59.350 47.826 0.00 0.00 0.00 4.30
5645 7152 2.405618 TCATATCAGGTGGAGGGAGG 57.594 55.000 0.00 0.00 0.00 4.30
5646 7153 1.132721 TCATATCAGGTGGAGGGAGGG 60.133 57.143 0.00 0.00 0.00 4.30
5647 7154 0.194587 ATATCAGGTGGAGGGAGGGG 59.805 60.000 0.00 0.00 0.00 4.79
5648 7155 1.973346 TATCAGGTGGAGGGAGGGGG 61.973 65.000 0.00 0.00 0.00 5.40
5662 7169 2.874751 GGGGGCGTGTCGAATTTG 59.125 61.111 0.00 0.00 0.00 2.32
5663 7170 2.696759 GGGGGCGTGTCGAATTTGG 61.697 63.158 0.00 0.00 0.00 3.28
5664 7171 2.696759 GGGGCGTGTCGAATTTGGG 61.697 63.158 0.00 0.00 0.00 4.12
5665 7172 1.969589 GGGCGTGTCGAATTTGGGT 60.970 57.895 0.00 0.00 0.00 4.51
5666 7173 0.674269 GGGCGTGTCGAATTTGGGTA 60.674 55.000 0.00 0.00 0.00 3.69
5667 7174 1.158434 GGCGTGTCGAATTTGGGTAA 58.842 50.000 0.00 0.00 0.00 2.85
5668 7175 1.135888 GGCGTGTCGAATTTGGGTAAC 60.136 52.381 0.00 0.00 0.00 2.50
5669 7176 1.802365 GCGTGTCGAATTTGGGTAACT 59.198 47.619 0.00 0.00 0.00 2.24
5675 7444 0.172578 GAATTTGGGTAACTGCGCCC 59.827 55.000 4.18 0.00 45.04 6.13
5680 7449 2.038837 GGGTAACTGCGCCCACTTC 61.039 63.158 4.18 0.00 44.23 3.01
5739 7508 1.153086 AATCTGCGCCATCTCCCAC 60.153 57.895 4.18 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.503399 GTCGAATTATTTTAGGATCCCAATAGT 57.497 33.333 8.55 3.40 0.00 2.12
37 38 1.067142 GTTCCCGGAAATTTGGAAGGC 60.067 52.381 0.73 0.00 38.77 4.35
71 72 2.766313 TCTCCGTCCACAAATGACAAG 58.234 47.619 0.00 0.00 32.91 3.16
79 80 0.682852 AATCCGTTCTCCGTCCACAA 59.317 50.000 0.00 0.00 33.66 3.33
83 84 0.391263 AGCAAATCCGTTCTCCGTCC 60.391 55.000 0.00 0.00 33.66 4.79
90 91 1.153958 GCAGGCAGCAAATCCGTTC 60.154 57.895 0.00 0.00 44.79 3.95
112 113 3.737266 TGAGTACGATGGAACGAACAAAC 59.263 43.478 0.00 0.00 37.03 2.93
121 122 0.468226 GGGGCATGAGTACGATGGAA 59.532 55.000 0.00 0.00 0.00 3.53
125 137 0.469917 CTTGGGGGCATGAGTACGAT 59.530 55.000 0.00 0.00 0.00 3.73
138 150 4.223144 TCTTTCTTTTCTTTCCCTTGGGG 58.777 43.478 5.78 0.00 46.11 4.96
147 159 9.554395 TGGTTTGTTTCTTTCTTTCTTTTCTTT 57.446 25.926 0.00 0.00 0.00 2.52
150 162 8.227791 GGTTGGTTTGTTTCTTTCTTTCTTTTC 58.772 33.333 0.00 0.00 0.00 2.29
151 163 7.095397 CGGTTGGTTTGTTTCTTTCTTTCTTTT 60.095 33.333 0.00 0.00 0.00 2.27
156 168 4.221041 TCCGGTTGGTTTGTTTCTTTCTTT 59.779 37.500 0.00 0.00 36.30 2.52
157 169 3.764972 TCCGGTTGGTTTGTTTCTTTCTT 59.235 39.130 0.00 0.00 36.30 2.52
158 170 3.358118 TCCGGTTGGTTTGTTTCTTTCT 58.642 40.909 0.00 0.00 36.30 2.52
163 175 1.957877 TGGATCCGGTTGGTTTGTTTC 59.042 47.619 7.39 0.00 36.30 2.78
193 205 4.134187 CGTCGTGGCACGCATGAC 62.134 66.667 33.59 24.38 42.21 3.06
238 250 0.819666 GGAGAATGGATTCGGGTGGC 60.820 60.000 0.00 0.00 41.56 5.01
277 289 1.065647 ATATCGTCCGAGGGGAGAGA 58.934 55.000 0.00 0.00 44.97 3.10
279 291 0.769247 TCATATCGTCCGAGGGGAGA 59.231 55.000 0.00 0.00 44.97 3.71
280 292 1.840737 ATCATATCGTCCGAGGGGAG 58.159 55.000 0.00 0.00 44.97 4.30
281 293 1.893137 CAATCATATCGTCCGAGGGGA 59.107 52.381 0.00 0.00 41.08 4.81
339 361 1.228657 AAGAGGTTGCTCGCGGAAAC 61.229 55.000 6.13 8.13 32.72 2.78
344 366 0.442699 GGTTTAAGAGGTTGCTCGCG 59.557 55.000 0.00 0.00 0.00 5.87
788 1096 4.025401 CACAACCGAACGGCTGCC 62.025 66.667 15.09 9.11 39.32 4.85
789 1097 2.954753 CTCACAACCGAACGGCTGC 61.955 63.158 15.09 0.00 39.32 5.25
790 1098 2.317609 CCTCACAACCGAACGGCTG 61.318 63.158 13.32 13.61 39.32 4.85
791 1099 1.466025 TACCTCACAACCGAACGGCT 61.466 55.000 13.32 0.00 39.32 5.52
934 1242 2.101700 GAGGAAAATGCGCCTCCTG 58.898 57.895 18.71 0.00 43.91 3.86
975 1283 4.485163 CCAAAAAGCAAGAAAGATACCCG 58.515 43.478 0.00 0.00 0.00 5.28
979 1287 5.481105 CATGGCCAAAAAGCAAGAAAGATA 58.519 37.500 10.96 0.00 0.00 1.98
1158 1466 0.950555 GATTGTCAGCAGCCGTGTCA 60.951 55.000 0.00 0.00 0.00 3.58
1239 1547 2.922387 CTCGTCATCAGAAACAGAGCAG 59.078 50.000 0.00 0.00 0.00 4.24
1248 1556 2.890945 TGACTTGGTCTCGTCATCAGAA 59.109 45.455 0.00 0.00 35.40 3.02
1346 1654 0.181114 GAGATATGTGCACCTGGCCA 59.819 55.000 15.69 4.71 43.89 5.36
1395 1707 6.303259 GTGTCGAAACAAAATCATGCTAAGAC 59.697 38.462 0.00 0.00 37.08 3.01
1416 1728 5.049405 ACATGTCCGATCTTTCTTTTGTGTC 60.049 40.000 0.00 0.00 0.00 3.67
1417 1729 4.821805 ACATGTCCGATCTTTCTTTTGTGT 59.178 37.500 0.00 0.00 0.00 3.72
1562 1878 7.647715 AGTTTTAAGTCATGAAATTTGGTGACG 59.352 33.333 19.13 0.00 44.20 4.35
1663 1985 6.540189 CCAATCTTAATCGCCCCTAATCTATG 59.460 42.308 0.00 0.00 0.00 2.23
1725 2047 4.644685 GTGTGGCACTTATCATTTGGGTAT 59.355 41.667 19.83 0.00 0.00 2.73
1728 2050 2.159393 CGTGTGGCACTTATCATTTGGG 60.159 50.000 19.83 0.00 31.34 4.12
1729 2051 2.487762 ACGTGTGGCACTTATCATTTGG 59.512 45.455 19.83 0.00 31.34 3.28
1730 2052 3.058293 ACACGTGTGGCACTTATCATTTG 60.058 43.478 22.71 7.02 34.19 2.32
1731 2053 3.058293 CACACGTGTGGCACTTATCATTT 60.058 43.478 35.65 0.00 42.10 2.32
1732 2054 2.483877 CACACGTGTGGCACTTATCATT 59.516 45.455 35.65 0.00 42.10 2.57
1733 2055 2.076100 CACACGTGTGGCACTTATCAT 58.924 47.619 35.65 0.33 42.10 2.45
1734 2056 1.507562 CACACGTGTGGCACTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
1744 2066 1.010580 TACTTTGTGCCACACGTGTG 58.989 50.000 36.13 36.13 45.23 3.82
1745 2067 1.399089 GTTACTTTGTGCCACACGTGT 59.601 47.619 17.22 17.22 37.14 4.49
1746 2068 1.398739 TGTTACTTTGTGCCACACGTG 59.601 47.619 15.48 15.48 37.14 4.49
1747 2069 1.399089 GTGTTACTTTGTGCCACACGT 59.601 47.619 0.00 0.16 37.14 4.49
1748 2070 1.268335 GGTGTTACTTTGTGCCACACG 60.268 52.381 0.00 0.00 38.93 4.49
1749 2071 1.268335 CGGTGTTACTTTGTGCCACAC 60.268 52.381 0.00 0.00 37.59 3.82
1750 2072 1.018148 CGGTGTTACTTTGTGCCACA 58.982 50.000 0.00 0.00 0.00 4.17
1751 2073 0.317519 GCGGTGTTACTTTGTGCCAC 60.318 55.000 0.00 0.00 0.00 5.01
1752 2074 1.448922 GGCGGTGTTACTTTGTGCCA 61.449 55.000 0.00 0.00 40.66 4.92
1753 2075 1.284715 GGCGGTGTTACTTTGTGCC 59.715 57.895 0.00 0.00 0.00 5.01
1754 2076 1.170290 AGGGCGGTGTTACTTTGTGC 61.170 55.000 0.00 0.00 0.00 4.57
1755 2077 0.591170 CAGGGCGGTGTTACTTTGTG 59.409 55.000 0.00 0.00 0.00 3.33
1756 2078 1.170290 GCAGGGCGGTGTTACTTTGT 61.170 55.000 0.00 0.00 0.00 2.83
1757 2079 1.579429 GCAGGGCGGTGTTACTTTG 59.421 57.895 0.00 0.00 0.00 2.77
1758 2080 1.602605 GGCAGGGCGGTGTTACTTT 60.603 57.895 0.00 0.00 0.00 2.66
1759 2081 2.033602 GGCAGGGCGGTGTTACTT 59.966 61.111 0.00 0.00 0.00 2.24
1760 2082 4.388499 CGGCAGGGCGGTGTTACT 62.388 66.667 7.42 0.00 0.00 2.24
1761 2083 4.692475 ACGGCAGGGCGGTGTTAC 62.692 66.667 19.43 0.00 40.43 2.50
1762 2084 2.962142 AAAACGGCAGGGCGGTGTTA 62.962 55.000 19.43 0.00 41.05 2.41
1763 2085 4.887190 AAACGGCAGGGCGGTGTT 62.887 61.111 19.43 7.60 41.05 3.32
1764 2086 2.962142 TAAAAACGGCAGGGCGGTGT 62.962 55.000 19.43 5.00 41.05 4.16
1765 2087 2.262303 TAAAAACGGCAGGGCGGTG 61.262 57.895 19.43 0.00 41.05 4.94
1766 2088 2.113562 TAAAAACGGCAGGGCGGT 59.886 55.556 19.43 10.43 43.64 5.68
1767 2089 1.797211 TTGTAAAAACGGCAGGGCGG 61.797 55.000 19.43 6.07 35.02 6.13
1768 2090 0.662077 GTTGTAAAAACGGCAGGGCG 60.662 55.000 13.96 13.96 0.00 6.13
1769 2091 0.671796 AGTTGTAAAAACGGCAGGGC 59.328 50.000 0.00 0.00 0.00 5.19
1770 2092 4.571372 TTTAGTTGTAAAAACGGCAGGG 57.429 40.909 0.00 0.00 0.00 4.45
1771 2093 6.563196 GCAATTTTAGTTGTAAAAACGGCAGG 60.563 38.462 0.00 0.00 40.65 4.85
1772 2094 6.351749 GCAATTTTAGTTGTAAAAACGGCAG 58.648 36.000 0.00 0.00 40.65 4.85
1773 2095 5.234543 GGCAATTTTAGTTGTAAAAACGGCA 59.765 36.000 10.76 0.00 40.65 5.69
1774 2096 5.234543 TGGCAATTTTAGTTGTAAAAACGGC 59.765 36.000 0.00 8.22 40.65 5.68
1775 2097 6.830114 TGGCAATTTTAGTTGTAAAAACGG 57.170 33.333 0.00 0.00 40.65 4.44
1819 2141 9.533253 CTATTTGGATGACAAGTTTCAGTTTTT 57.467 29.630 0.00 0.00 40.82 1.94
1820 2142 8.912988 TCTATTTGGATGACAAGTTTCAGTTTT 58.087 29.630 0.00 0.00 40.82 2.43
1821 2143 8.463930 TCTATTTGGATGACAAGTTTCAGTTT 57.536 30.769 0.00 0.00 40.82 2.66
1822 2144 8.463930 TTCTATTTGGATGACAAGTTTCAGTT 57.536 30.769 0.00 0.00 40.82 3.16
1823 2145 8.463930 TTTCTATTTGGATGACAAGTTTCAGT 57.536 30.769 0.00 0.00 40.82 3.41
1824 2146 8.571336 ACTTTCTATTTGGATGACAAGTTTCAG 58.429 33.333 0.00 0.00 40.82 3.02
1825 2147 8.463930 ACTTTCTATTTGGATGACAAGTTTCA 57.536 30.769 0.00 0.00 40.82 2.69
1826 2148 9.185192 CAACTTTCTATTTGGATGACAAGTTTC 57.815 33.333 0.00 0.00 40.82 2.78
1827 2149 7.653311 GCAACTTTCTATTTGGATGACAAGTTT 59.347 33.333 0.00 0.00 40.82 2.66
1828 2150 7.147976 GCAACTTTCTATTTGGATGACAAGTT 58.852 34.615 0.00 0.00 40.82 2.66
1829 2151 6.294731 GGCAACTTTCTATTTGGATGACAAGT 60.295 38.462 0.00 0.00 40.82 3.16
1830 2152 6.095377 GGCAACTTTCTATTTGGATGACAAG 58.905 40.000 0.00 0.00 40.82 3.16
1831 2153 5.538053 TGGCAACTTTCTATTTGGATGACAA 59.462 36.000 0.00 0.00 35.37 3.18
1832 2154 5.076182 TGGCAACTTTCTATTTGGATGACA 58.924 37.500 0.00 0.00 37.61 3.58
1833 2155 5.643379 TGGCAACTTTCTATTTGGATGAC 57.357 39.130 0.00 0.00 37.61 3.06
1834 2156 7.953005 TTATGGCAACTTTCTATTTGGATGA 57.047 32.000 0.00 0.00 37.61 2.92
1835 2157 9.252962 GAATTATGGCAACTTTCTATTTGGATG 57.747 33.333 0.00 0.00 37.61 3.51
1836 2158 8.980596 TGAATTATGGCAACTTTCTATTTGGAT 58.019 29.630 0.00 0.00 37.61 3.41
1837 2159 8.250332 GTGAATTATGGCAACTTTCTATTTGGA 58.750 33.333 0.00 0.00 37.61 3.53
1838 2160 8.034215 TGTGAATTATGGCAACTTTCTATTTGG 58.966 33.333 0.00 0.00 37.61 3.28
1839 2161 8.984891 TGTGAATTATGGCAACTTTCTATTTG 57.015 30.769 0.00 0.00 37.61 2.32
1840 2162 9.423061 GTTGTGAATTATGGCAACTTTCTATTT 57.577 29.630 0.00 0.00 38.41 1.40
1841 2163 8.806146 AGTTGTGAATTATGGCAACTTTCTATT 58.194 29.630 0.00 0.00 46.18 1.73
1842 2164 8.353423 AGTTGTGAATTATGGCAACTTTCTAT 57.647 30.769 0.00 0.00 46.18 1.98
1843 2165 7.759489 AGTTGTGAATTATGGCAACTTTCTA 57.241 32.000 0.00 0.00 46.18 2.10
1844 2166 6.655078 AGTTGTGAATTATGGCAACTTTCT 57.345 33.333 0.00 0.00 46.18 2.52
1845 2167 8.810652 TTTAGTTGTGAATTATGGCAACTTTC 57.189 30.769 12.90 0.00 46.18 2.62
1846 2168 8.421002 ACTTTAGTTGTGAATTATGGCAACTTT 58.579 29.630 12.90 0.00 46.18 2.66
1847 2169 7.951591 ACTTTAGTTGTGAATTATGGCAACTT 58.048 30.769 12.90 0.00 46.18 2.66
1864 2186 1.615919 CCGGGGATGGCAACTTTAGTT 60.616 52.381 0.00 0.00 39.12 2.24
1865 2187 0.034477 CCGGGGATGGCAACTTTAGT 60.034 55.000 0.00 0.00 37.61 2.24
1866 2188 0.751643 CCCGGGGATGGCAACTTTAG 60.752 60.000 14.71 0.00 37.61 1.85
1867 2189 1.304952 CCCGGGGATGGCAACTTTA 59.695 57.895 14.71 0.00 37.61 1.85
1868 2190 1.502527 TACCCGGGGATGGCAACTTT 61.503 55.000 27.92 0.33 37.61 2.66
1869 2191 1.502527 TTACCCGGGGATGGCAACTT 61.503 55.000 27.92 0.96 37.61 2.66
1870 2192 1.926489 TTACCCGGGGATGGCAACT 60.926 57.895 27.92 1.85 37.61 3.16
1871 2193 1.751544 GTTACCCGGGGATGGCAAC 60.752 63.158 27.92 7.18 0.00 4.17
1872 2194 0.620990 TAGTTACCCGGGGATGGCAA 60.621 55.000 27.92 0.00 0.00 4.52
1873 2195 0.620990 TTAGTTACCCGGGGATGGCA 60.621 55.000 27.92 0.00 0.00 4.92
1874 2196 0.547553 TTTAGTTACCCGGGGATGGC 59.452 55.000 27.92 10.07 0.00 4.40
1875 2197 1.841919 ACTTTAGTTACCCGGGGATGG 59.158 52.381 27.92 8.62 0.00 3.51
1876 2198 3.275999 CAACTTTAGTTACCCGGGGATG 58.724 50.000 27.92 4.55 36.32 3.51
1877 2199 2.356432 GCAACTTTAGTTACCCGGGGAT 60.356 50.000 27.92 7.25 36.32 3.85
1878 2200 1.003464 GCAACTTTAGTTACCCGGGGA 59.997 52.381 27.92 16.00 36.32 4.81
1879 2201 1.456296 GCAACTTTAGTTACCCGGGG 58.544 55.000 27.92 12.73 36.32 5.73
1880 2202 1.271488 TGGCAACTTTAGTTACCCGGG 60.271 52.381 22.25 22.25 40.04 5.73
1881 2203 2.188062 TGGCAACTTTAGTTACCCGG 57.812 50.000 8.95 0.00 40.04 5.73
1882 2204 5.883503 TTAATGGCAACTTTAGTTACCCG 57.116 39.130 8.95 0.00 40.04 5.28
1904 2226 1.000717 CAATTCCGCCCTGACGTTTTT 60.001 47.619 0.00 0.00 0.00 1.94
1905 2227 0.596082 CAATTCCGCCCTGACGTTTT 59.404 50.000 0.00 0.00 0.00 2.43
1906 2228 0.536460 ACAATTCCGCCCTGACGTTT 60.536 50.000 0.00 0.00 0.00 3.60
1907 2229 0.536460 AACAATTCCGCCCTGACGTT 60.536 50.000 0.00 0.00 0.00 3.99
1908 2230 0.536460 AAACAATTCCGCCCTGACGT 60.536 50.000 0.00 0.00 0.00 4.34
1909 2231 0.596082 AAAACAATTCCGCCCTGACG 59.404 50.000 0.00 0.00 0.00 4.35
1910 2232 1.339929 ACAAAACAATTCCGCCCTGAC 59.660 47.619 0.00 0.00 0.00 3.51
1911 2233 1.339610 CACAAAACAATTCCGCCCTGA 59.660 47.619 0.00 0.00 0.00 3.86
1912 2234 1.782044 CACAAAACAATTCCGCCCTG 58.218 50.000 0.00 0.00 0.00 4.45
1913 2235 0.033366 GCACAAAACAATTCCGCCCT 59.967 50.000 0.00 0.00 0.00 5.19
1914 2236 0.948623 GGCACAAAACAATTCCGCCC 60.949 55.000 0.00 0.00 31.76 6.13
1915 2237 0.249657 TGGCACAAAACAATTCCGCC 60.250 50.000 0.00 0.00 38.56 6.13
1916 2238 0.858583 GTGGCACAAAACAATTCCGC 59.141 50.000 13.86 0.00 44.16 5.54
1917 2239 1.857837 GTGTGGCACAAAACAATTCCG 59.142 47.619 23.90 0.00 44.16 4.30
1918 2240 1.857837 CGTGTGGCACAAAACAATTCC 59.142 47.619 23.90 5.43 44.16 3.01
1919 2241 2.281234 CACGTGTGGCACAAAACAATTC 59.719 45.455 23.90 6.20 44.16 2.17
1920 2242 2.266554 CACGTGTGGCACAAAACAATT 58.733 42.857 23.90 0.00 44.16 2.32
1921 2243 1.203523 ACACGTGTGGCACAAAACAAT 59.796 42.857 23.90 3.15 44.16 2.71
1922 2244 0.598562 ACACGTGTGGCACAAAACAA 59.401 45.000 23.90 0.00 44.16 2.83
1923 2245 0.109551 CACACGTGTGGCACAAAACA 60.110 50.000 35.65 0.00 44.16 2.83
1924 2246 2.647784 CACACGTGTGGCACAAAAC 58.352 52.632 35.65 9.38 44.16 2.43
1933 2255 1.995484 CTGATAAGAGCCACACGTGTG 59.005 52.381 36.13 36.13 45.23 3.82
1934 2256 1.066858 CCTGATAAGAGCCACACGTGT 60.067 52.381 17.22 17.22 0.00 4.49
1935 2257 1.645034 CCTGATAAGAGCCACACGTG 58.355 55.000 15.48 15.48 0.00 4.49
1936 2258 0.537188 CCCTGATAAGAGCCACACGT 59.463 55.000 0.00 0.00 0.00 4.49
1937 2259 0.537188 ACCCTGATAAGAGCCACACG 59.463 55.000 0.00 0.00 0.00 4.49
1938 2260 1.134371 GGACCCTGATAAGAGCCACAC 60.134 57.143 0.00 0.00 0.00 3.82
1939 2261 1.204146 GGACCCTGATAAGAGCCACA 58.796 55.000 0.00 0.00 0.00 4.17
1940 2262 1.501582 AGGACCCTGATAAGAGCCAC 58.498 55.000 0.00 0.00 0.00 5.01
1941 2263 3.637821 ATAGGACCCTGATAAGAGCCA 57.362 47.619 0.00 0.00 0.00 4.75
1942 2264 4.984146 AAATAGGACCCTGATAAGAGCC 57.016 45.455 0.00 0.00 0.00 4.70
1943 2265 8.596781 TCTATAAATAGGACCCTGATAAGAGC 57.403 38.462 0.00 0.00 0.00 4.09
1977 2299 8.379457 AGAAAGGAATACAGAGTACACAAAAC 57.621 34.615 0.00 0.00 0.00 2.43
2049 2371 0.250038 TCCACTCAGCTGTCACTTGC 60.250 55.000 14.67 0.00 0.00 4.01
2498 2820 2.906389 ACCATCTGTTTCAGCTCCACTA 59.094 45.455 0.00 0.00 0.00 2.74
2893 3215 6.166982 GCCACTGAAAGATAGTAAAGTGAGT 58.833 40.000 2.32 0.00 37.76 3.41
2969 3291 7.781324 AAATTCACCACCAGTCTTCAATAAT 57.219 32.000 0.00 0.00 0.00 1.28
2973 3295 4.099266 CCAAAATTCACCACCAGTCTTCAA 59.901 41.667 0.00 0.00 0.00 2.69
2986 3308 2.166459 GCTCTTAGGGCCCAAAATTCAC 59.834 50.000 27.56 1.79 0.00 3.18
2991 3313 2.390225 TTTGCTCTTAGGGCCCAAAA 57.610 45.000 27.56 17.09 0.00 2.44
3049 3371 1.055040 TCTTTGGGTGGGCCAAAATG 58.945 50.000 8.40 6.12 37.08 2.32
3050 3372 1.629861 CATCTTTGGGTGGGCCAAAAT 59.370 47.619 8.40 0.00 37.08 1.82
3060 3382 2.578021 AGCTACATCCACATCTTTGGGT 59.422 45.455 0.00 0.00 37.24 4.51
3084 3407 2.840651 AGGCTGTAAAGATAGCAGTGGT 59.159 45.455 0.00 0.00 41.40 4.16
3153 3476 6.935167 ACATAAAGGGATGGACAATCAAAAC 58.065 36.000 0.00 0.00 36.98 2.43
3210 3533 7.581213 TGACATTCAATATTGTTGTATCCCC 57.419 36.000 19.61 11.66 0.00 4.81
3376 3699 5.877564 GGAACTCTTCTTTTGGTATCCTCAG 59.122 44.000 0.00 0.00 0.00 3.35
3543 3866 1.493022 TGGAGGCACCTTAACTTGTGT 59.507 47.619 1.84 0.00 39.86 3.72
3686 4009 5.467063 GCACCTATCTGATAAAGTAGTTGGC 59.533 44.000 0.00 0.00 0.00 4.52
3693 4016 5.423610 AGTCAGTGCACCTATCTGATAAAGT 59.576 40.000 14.63 0.00 39.77 2.66
3722 4045 7.650903 GCAATATTTCTCTTTCCACATTCCATC 59.349 37.037 0.00 0.00 0.00 3.51
3730 4053 7.383102 TCTTCTGCAATATTTCTCTTTCCAC 57.617 36.000 0.00 0.00 0.00 4.02
3746 4069 1.024271 GTGTTGCACCTTCTTCTGCA 58.976 50.000 0.00 0.00 41.68 4.41
3876 4199 7.162082 ACTGTGGTTAAAATAGAGAAGACTGG 58.838 38.462 0.00 0.00 0.00 4.00
4040 4384 5.481473 ACCCAACAATGCTCAGAAAATATGT 59.519 36.000 0.00 0.00 0.00 2.29
4041 4385 5.969423 ACCCAACAATGCTCAGAAAATATG 58.031 37.500 0.00 0.00 0.00 1.78
4042 4386 7.178274 TGTTACCCAACAATGCTCAGAAAATAT 59.822 33.333 0.00 0.00 41.69 1.28
4043 4387 6.491745 TGTTACCCAACAATGCTCAGAAAATA 59.508 34.615 0.00 0.00 41.69 1.40
4044 4388 5.304101 TGTTACCCAACAATGCTCAGAAAAT 59.696 36.000 0.00 0.00 41.69 1.82
4045 4389 4.646945 TGTTACCCAACAATGCTCAGAAAA 59.353 37.500 0.00 0.00 41.69 2.29
4046 4390 4.211125 TGTTACCCAACAATGCTCAGAAA 58.789 39.130 0.00 0.00 41.69 2.52
4047 4391 3.826524 TGTTACCCAACAATGCTCAGAA 58.173 40.909 0.00 0.00 41.69 3.02
4048 4392 3.500448 TGTTACCCAACAATGCTCAGA 57.500 42.857 0.00 0.00 41.69 3.27
4057 4401 7.721842 TCATTAGTTTCAGATTGTTACCCAACA 59.278 33.333 0.00 0.00 42.93 3.33
4058 4402 8.106247 TCATTAGTTTCAGATTGTTACCCAAC 57.894 34.615 0.00 0.00 35.44 3.77
4059 4403 8.877864 ATCATTAGTTTCAGATTGTTACCCAA 57.122 30.769 0.00 0.00 37.49 4.12
4060 4404 8.877864 AATCATTAGTTTCAGATTGTTACCCA 57.122 30.769 0.00 0.00 30.13 4.51
4070 4414 5.774690 AGTGCCCAAAATCATTAGTTTCAGA 59.225 36.000 0.00 0.00 0.00 3.27
4130 4474 6.317789 TCCTCATAAAAGTGCAAAACTGAG 57.682 37.500 0.00 0.00 39.81 3.35
4202 4546 5.829924 ACAATCATGAATGGATGGTAACTCC 59.170 40.000 15.10 0.00 37.61 3.85
4203 4547 6.949352 ACAATCATGAATGGATGGTAACTC 57.051 37.500 15.10 0.00 37.61 3.01
4204 4548 6.488006 GCTACAATCATGAATGGATGGTAACT 59.512 38.462 15.10 0.00 32.29 2.24
4205 4549 6.488006 AGCTACAATCATGAATGGATGGTAAC 59.512 38.462 15.10 0.00 32.29 2.50
4284 4638 8.634335 TGTCTCCATTTCACAATAATTCAAGA 57.366 30.769 0.00 0.00 0.00 3.02
4537 4891 7.817418 TTCATAAACTGGTTCAAGCTTAACT 57.183 32.000 0.00 0.00 0.00 2.24
4738 5092 2.049526 CGCGTGTCCACAGCTACA 60.050 61.111 0.00 0.00 0.00 2.74
4780 5134 5.232463 ACTCAATCGCTTCCGTACTTTTTA 58.768 37.500 0.00 0.00 35.54 1.52
4898 5252 8.682936 ATATTCTTCCAAACTATGCCTACTTG 57.317 34.615 0.00 0.00 0.00 3.16
5047 5402 5.906113 ATGCCGGACTATACTTCTATCTG 57.094 43.478 5.05 0.00 0.00 2.90
5097 5452 5.185635 ACATGGCTTTACATACATTTGCACT 59.814 36.000 0.00 0.00 0.00 4.40
5168 5523 8.615211 TGCAGTATGAATGACATTTAGTTCATC 58.385 33.333 1.39 0.00 40.59 2.92
5186 5541 2.668457 GACCAAACGAGTCTGCAGTATG 59.332 50.000 14.67 5.09 40.87 2.39
5195 5550 3.139077 ACTTTCATGGACCAAACGAGTC 58.861 45.455 0.00 0.00 0.00 3.36
5302 6791 8.583810 TTTACTTATATAGTTCACCGTGATGC 57.416 34.615 1.09 0.00 38.33 3.91
5308 6797 7.919313 TCGCTTTTACTTATATAGTTCACCG 57.081 36.000 0.00 0.00 38.33 4.94
5357 6846 4.261197 GGTGTGGCAGTTACTTTTCTCAAG 60.261 45.833 0.00 0.00 0.00 3.02
5359 6848 3.211045 GGTGTGGCAGTTACTTTTCTCA 58.789 45.455 0.00 0.00 0.00 3.27
5360 6849 3.003378 GTGGTGTGGCAGTTACTTTTCTC 59.997 47.826 0.00 0.00 0.00 2.87
5371 6860 3.125316 CAAAAAGATTGTGGTGTGGCAG 58.875 45.455 0.00 0.00 0.00 4.85
5379 6868 8.481974 TCAATAATGATGCAAAAAGATTGTGG 57.518 30.769 0.00 0.00 0.00 4.17
5382 6871 9.749490 GTGTTCAATAATGATGCAAAAAGATTG 57.251 29.630 0.00 0.00 34.96 2.67
5384 6873 9.661563 ATGTGTTCAATAATGATGCAAAAAGAT 57.338 25.926 0.00 0.00 34.96 2.40
5386 6875 8.927721 TGATGTGTTCAATAATGATGCAAAAAG 58.072 29.630 0.00 0.00 34.96 2.27
5402 6892 7.514784 AATTCAACAAGATCTGATGTGTTCA 57.485 32.000 7.41 0.00 31.98 3.18
5436 6926 7.441864 GTTGTTTAAACTTCAAACCTGAAACG 58.558 34.615 18.72 0.00 41.05 3.60
5443 6933 7.750014 TGTCTAACGTTGTTTAAACTTCAAACC 59.250 33.333 18.72 3.02 35.46 3.27
5444 6934 8.658171 TGTCTAACGTTGTTTAAACTTCAAAC 57.342 30.769 18.72 13.03 36.60 2.93
5446 6936 8.452534 ACATGTCTAACGTTGTTTAAACTTCAA 58.547 29.630 18.72 2.98 0.00 2.69
5447 6937 7.976826 ACATGTCTAACGTTGTTTAAACTTCA 58.023 30.769 18.72 1.08 0.00 3.02
5448 6938 8.831000 AACATGTCTAACGTTGTTTAAACTTC 57.169 30.769 18.72 10.62 0.00 3.01
5450 6940 9.925268 CTAAACATGTCTAACGTTGTTTAAACT 57.075 29.630 18.72 1.35 38.08 2.66
5451 6941 9.706846 ACTAAACATGTCTAACGTTGTTTAAAC 57.293 29.630 11.99 11.54 38.08 2.01
5453 6943 9.919348 GAACTAAACATGTCTAACGTTGTTTAA 57.081 29.630 11.99 1.71 38.08 1.52
5454 6944 9.096160 TGAACTAAACATGTCTAACGTTGTTTA 57.904 29.630 11.99 14.65 37.81 2.01
5455 6945 7.976826 TGAACTAAACATGTCTAACGTTGTTT 58.023 30.769 11.99 14.29 39.10 2.83
5456 6946 7.542534 TGAACTAAACATGTCTAACGTTGTT 57.457 32.000 11.99 2.82 31.26 2.83
5457 6947 6.292703 GCTGAACTAAACATGTCTAACGTTGT 60.293 38.462 11.99 0.00 0.00 3.32
5458 6948 6.071463 GCTGAACTAAACATGTCTAACGTTG 58.929 40.000 11.99 0.97 0.00 4.10
5459 6949 5.178809 GGCTGAACTAAACATGTCTAACGTT 59.821 40.000 5.88 5.88 0.00 3.99
5460 6950 4.689345 GGCTGAACTAAACATGTCTAACGT 59.311 41.667 0.00 0.00 0.00 3.99
5461 6951 4.092968 GGGCTGAACTAAACATGTCTAACG 59.907 45.833 0.00 0.00 0.00 3.18
5462 6952 5.001232 TGGGCTGAACTAAACATGTCTAAC 58.999 41.667 0.00 0.00 0.00 2.34
5466 6956 3.428045 GCATGGGCTGAACTAAACATGTC 60.428 47.826 0.00 0.00 38.29 3.06
5470 6960 1.164411 CGCATGGGCTGAACTAAACA 58.836 50.000 0.00 0.00 38.10 2.83
5474 6964 0.613260 AACTCGCATGGGCTGAACTA 59.387 50.000 4.59 0.00 38.10 2.24
5476 6966 0.598065 AAAACTCGCATGGGCTGAAC 59.402 50.000 4.59 0.00 38.10 3.18
5495 6985 2.283101 GAACCCACCATGCAGGCA 60.283 61.111 0.00 0.00 43.14 4.75
5500 6990 1.024579 ACGAATCGAACCCACCATGC 61.025 55.000 10.55 0.00 0.00 4.06
5502 6992 1.024579 GCACGAATCGAACCCACCAT 61.025 55.000 10.55 0.00 0.00 3.55
5504 6994 1.024579 ATGCACGAATCGAACCCACC 61.025 55.000 10.55 0.00 0.00 4.61
5512 7002 3.443037 AGAGAAGAGAATGCACGAATCG 58.557 45.455 0.00 0.00 0.00 3.34
5534 7024 1.658686 CGGCTAGAAGGAGACGTGCT 61.659 60.000 0.00 0.00 43.29 4.40
5578 7085 2.819284 GGATTGGGTAGGCTCCGGG 61.819 68.421 0.00 0.00 0.00 5.73
5579 7086 2.819284 GGGATTGGGTAGGCTCCGG 61.819 68.421 0.00 0.00 0.00 5.14
5580 7087 1.632018 TTGGGATTGGGTAGGCTCCG 61.632 60.000 0.00 0.00 0.00 4.63
5594 7101 3.948719 GTGGGGCGACACTTGGGA 61.949 66.667 0.00 0.00 38.32 4.37
5611 7118 3.321968 TGATATGAATGTGTCGGGAGGAG 59.678 47.826 0.00 0.00 0.00 3.69
5612 7119 3.304829 TGATATGAATGTGTCGGGAGGA 58.695 45.455 0.00 0.00 0.00 3.71
5613 7120 3.555795 CCTGATATGAATGTGTCGGGAGG 60.556 52.174 0.00 0.00 39.05 4.30
5614 7121 3.070159 ACCTGATATGAATGTGTCGGGAG 59.930 47.826 6.12 0.00 39.05 4.30
5615 7122 3.038280 ACCTGATATGAATGTGTCGGGA 58.962 45.455 6.12 0.00 39.05 5.14
5616 7123 3.133691 CACCTGATATGAATGTGTCGGG 58.866 50.000 0.00 0.00 41.80 5.14
5617 7124 3.133691 CCACCTGATATGAATGTGTCGG 58.866 50.000 0.00 0.00 0.00 4.79
5618 7125 4.053983 CTCCACCTGATATGAATGTGTCG 58.946 47.826 0.00 0.00 0.00 4.35
5619 7126 4.384056 CCTCCACCTGATATGAATGTGTC 58.616 47.826 0.00 0.00 0.00 3.67
5620 7127 3.137176 CCCTCCACCTGATATGAATGTGT 59.863 47.826 0.00 0.00 0.00 3.72
5621 7128 3.392285 TCCCTCCACCTGATATGAATGTG 59.608 47.826 0.00 0.00 0.00 3.21
5622 7129 3.649981 CTCCCTCCACCTGATATGAATGT 59.350 47.826 0.00 0.00 0.00 2.71
5623 7130 3.008813 CCTCCCTCCACCTGATATGAATG 59.991 52.174 0.00 0.00 0.00 2.67
5624 7131 3.254960 CCTCCCTCCACCTGATATGAAT 58.745 50.000 0.00 0.00 0.00 2.57
5625 7132 2.694397 CCTCCCTCCACCTGATATGAA 58.306 52.381 0.00 0.00 0.00 2.57
5626 7133 1.132721 CCCTCCCTCCACCTGATATGA 60.133 57.143 0.00 0.00 0.00 2.15
5627 7134 1.356124 CCCTCCCTCCACCTGATATG 58.644 60.000 0.00 0.00 0.00 1.78
5628 7135 0.194587 CCCCTCCCTCCACCTGATAT 59.805 60.000 0.00 0.00 0.00 1.63
5629 7136 1.632164 CCCCTCCCTCCACCTGATA 59.368 63.158 0.00 0.00 0.00 2.15
5630 7137 2.374342 CCCCTCCCTCCACCTGAT 59.626 66.667 0.00 0.00 0.00 2.90
5631 7138 4.024984 CCCCCTCCCTCCACCTGA 62.025 72.222 0.00 0.00 0.00 3.86
5645 7152 2.696759 CCAAATTCGACACGCCCCC 61.697 63.158 0.00 0.00 0.00 5.40
5646 7153 2.696759 CCCAAATTCGACACGCCCC 61.697 63.158 0.00 0.00 0.00 5.80
5647 7154 0.674269 TACCCAAATTCGACACGCCC 60.674 55.000 0.00 0.00 0.00 6.13
5648 7155 1.135888 GTTACCCAAATTCGACACGCC 60.136 52.381 0.00 0.00 0.00 5.68
5649 7156 1.802365 AGTTACCCAAATTCGACACGC 59.198 47.619 0.00 0.00 0.00 5.34
5650 7157 2.412325 GCAGTTACCCAAATTCGACACG 60.412 50.000 0.00 0.00 0.00 4.49
5651 7158 2.412325 CGCAGTTACCCAAATTCGACAC 60.412 50.000 0.00 0.00 0.00 3.67
5652 7159 1.801771 CGCAGTTACCCAAATTCGACA 59.198 47.619 0.00 0.00 0.00 4.35
5653 7160 1.465187 GCGCAGTTACCCAAATTCGAC 60.465 52.381 0.30 0.00 0.00 4.20
5654 7161 0.800012 GCGCAGTTACCCAAATTCGA 59.200 50.000 0.30 0.00 0.00 3.71
5655 7162 0.179174 GGCGCAGTTACCCAAATTCG 60.179 55.000 10.83 0.00 0.00 3.34
5656 7163 0.172578 GGGCGCAGTTACCCAAATTC 59.827 55.000 10.83 0.00 46.22 2.17
5657 7164 2.272923 GGGCGCAGTTACCCAAATT 58.727 52.632 10.83 0.00 46.22 1.82
5658 7165 4.012138 GGGCGCAGTTACCCAAAT 57.988 55.556 10.83 0.00 46.22 2.32
5663 7170 2.038837 GGAAGTGGGCGCAGTTACC 61.039 63.158 22.37 19.54 0.00 2.85
5664 7171 2.038837 GGGAAGTGGGCGCAGTTAC 61.039 63.158 22.26 22.26 0.00 2.50
5665 7172 2.349755 GGGAAGTGGGCGCAGTTA 59.650 61.111 22.37 0.00 0.00 2.24
5666 7173 4.660938 GGGGAAGTGGGCGCAGTT 62.661 66.667 22.50 22.50 0.00 3.16
5675 7444 4.202472 ACACTTAGAGAAAAGGGGGAAGTG 60.202 45.833 9.64 9.64 44.90 3.16
5680 7449 4.565861 GGAGAACACTTAGAGAAAAGGGGG 60.566 50.000 0.00 0.00 33.98 5.40
5685 7454 7.310113 GGAGATGAGGAGAACACTTAGAGAAAA 60.310 40.741 0.00 0.00 0.00 2.29



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.