Multiple sequence alignment - TraesCS1A01G229200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G229200 chr1A 100.000 2347 0 0 1 2347 401549803 401547457 0.000000e+00 4335.0
1 TraesCS1A01G229200 chr1A 98.974 390 4 0 1 390 520912457 520912068 0.000000e+00 699.0
2 TraesCS1A01G229200 chr1A 98.718 390 5 0 1 390 67636208 67636597 0.000000e+00 693.0
3 TraesCS1A01G229200 chr1A 98.718 390 5 0 1 390 497093431 497093820 0.000000e+00 693.0
4 TraesCS1A01G229200 chr1A 92.857 210 14 1 904 1112 579869172 579868963 1.050000e-78 303.0
5 TraesCS1A01G229200 chr5A 94.444 1908 91 8 389 2285 27126703 27124800 0.000000e+00 2922.0
6 TraesCS1A01G229200 chr5A 93.734 766 46 2 390 1153 420633952 420633187 0.000000e+00 1147.0
7 TraesCS1A01G229200 chr5A 97.250 509 14 0 1416 1924 420633184 420632676 0.000000e+00 863.0
8 TraesCS1A01G229200 chr5A 98.718 390 5 0 1 390 457858234 457858623 0.000000e+00 693.0
9 TraesCS1A01G229200 chr5A 98.718 390 5 0 1 390 471611950 471612339 0.000000e+00 693.0
10 TraesCS1A01G229200 chr4A 94.195 1912 88 9 391 2285 550328786 550326881 0.000000e+00 2894.0
11 TraesCS1A01G229200 chr4A 98.718 390 5 0 1 390 3286942 3286553 0.000000e+00 693.0
12 TraesCS1A01G229200 chr4A 98.718 390 5 0 1 390 108679183 108679572 0.000000e+00 693.0
13 TraesCS1A01G229200 chr4A 98.718 390 5 0 1 390 641370383 641370772 0.000000e+00 693.0
14 TraesCS1A01G229200 chr4A 98.551 69 0 1 2280 2347 550326620 550326552 1.140000e-23 121.0
15 TraesCS1A01G229200 chr2A 95.396 1325 59 2 955 2278 647178864 647180187 0.000000e+00 2108.0
16 TraesCS1A01G229200 chr2A 95.734 1172 37 3 1116 2274 617004713 617005884 0.000000e+00 1875.0
17 TraesCS1A01G229200 chr2A 94.776 536 26 2 391 925 647178329 647178863 0.000000e+00 833.0
18 TraesCS1A01G229200 chr3A 96.322 1169 36 2 1116 2277 714028742 714027574 0.000000e+00 1914.0
19 TraesCS1A01G229200 chr7A 95.603 1160 44 2 1116 2274 71732133 71733286 0.000000e+00 1853.0
20 TraesCS1A01G229200 chr6B 95.502 1156 51 1 1116 2271 564720553 564721707 0.000000e+00 1845.0
21 TraesCS1A01G229200 chr6B 95.058 688 31 2 1116 1800 527622327 527621640 0.000000e+00 1079.0
22 TraesCS1A01G229200 chr6B 87.305 512 36 10 390 887 421314905 421315401 2.040000e-155 558.0
23 TraesCS1A01G229200 chr6B 89.831 413 27 6 390 801 90183115 90182717 1.240000e-142 516.0
24 TraesCS1A01G229200 chr6B 89.855 69 6 1 783 851 607677867 607677934 1.160000e-13 87.9
25 TraesCS1A01G229200 chr3B 95.156 1156 49 3 1116 2271 18542616 18543764 0.000000e+00 1818.0
26 TraesCS1A01G229200 chr3B 95.036 685 32 1 1119 1801 644434023 644433339 0.000000e+00 1075.0
27 TraesCS1A01G229200 chr6A 93.288 730 43 5 387 1112 574611308 574610581 0.000000e+00 1072.0
28 TraesCS1A01G229200 chr6A 94.264 523 27 3 592 1112 201106812 201107333 0.000000e+00 797.0
29 TraesCS1A01G229200 chr6A 98.974 390 4 0 1 390 138027805 138027416 0.000000e+00 699.0
30 TraesCS1A01G229200 chr6A 94.220 173 9 1 735 907 605995209 605995380 1.790000e-66 263.0
31 TraesCS1A01G229200 chr3D 92.205 526 34 3 387 907 209980099 209980622 0.000000e+00 737.0
32 TraesCS1A01G229200 chr3D 91.209 364 24 2 412 773 588086542 588086185 2.710000e-134 488.0
33 TraesCS1A01G229200 chr6D 92.167 383 15 5 387 767 47074893 47075262 5.740000e-146 527.0
34 TraesCS1A01G229200 chr6D 86.560 439 34 11 1575 2005 178629974 178630395 5.910000e-126 460.0
35 TraesCS1A01G229200 chr2B 92.147 382 16 7 388 767 753043631 753043262 5.740000e-146 527.0
36 TraesCS1A01G229200 chr5D 86.410 493 23 16 421 907 442384340 442383886 1.250000e-137 499.0
37 TraesCS1A01G229200 chr5D 86.183 427 36 10 1574 1996 365074032 365073625 7.700000e-120 440.0
38 TraesCS1A01G229200 chr1D 90.000 210 11 4 904 1112 483149649 483149449 1.790000e-66 263.0
39 TraesCS1A01G229200 chr1B 93.064 173 9 3 942 1112 673181953 673181782 1.390000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G229200 chr1A 401547457 401549803 2346 True 4335.0 4335 100.000 1 2347 1 chr1A.!!$R1 2346
1 TraesCS1A01G229200 chr5A 27124800 27126703 1903 True 2922.0 2922 94.444 389 2285 1 chr5A.!!$R1 1896
2 TraesCS1A01G229200 chr5A 420632676 420633952 1276 True 1005.0 1147 95.492 390 1924 2 chr5A.!!$R2 1534
3 TraesCS1A01G229200 chr4A 550326552 550328786 2234 True 1507.5 2894 96.373 391 2347 2 chr4A.!!$R2 1956
4 TraesCS1A01G229200 chr2A 617004713 617005884 1171 False 1875.0 1875 95.734 1116 2274 1 chr2A.!!$F1 1158
5 TraesCS1A01G229200 chr2A 647178329 647180187 1858 False 1470.5 2108 95.086 391 2278 2 chr2A.!!$F2 1887
6 TraesCS1A01G229200 chr3A 714027574 714028742 1168 True 1914.0 1914 96.322 1116 2277 1 chr3A.!!$R1 1161
7 TraesCS1A01G229200 chr7A 71732133 71733286 1153 False 1853.0 1853 95.603 1116 2274 1 chr7A.!!$F1 1158
8 TraesCS1A01G229200 chr6B 564720553 564721707 1154 False 1845.0 1845 95.502 1116 2271 1 chr6B.!!$F2 1155
9 TraesCS1A01G229200 chr6B 527621640 527622327 687 True 1079.0 1079 95.058 1116 1800 1 chr6B.!!$R2 684
10 TraesCS1A01G229200 chr3B 18542616 18543764 1148 False 1818.0 1818 95.156 1116 2271 1 chr3B.!!$F1 1155
11 TraesCS1A01G229200 chr3B 644433339 644434023 684 True 1075.0 1075 95.036 1119 1801 1 chr3B.!!$R1 682
12 TraesCS1A01G229200 chr6A 574610581 574611308 727 True 1072.0 1072 93.288 387 1112 1 chr6A.!!$R2 725
13 TraesCS1A01G229200 chr6A 201106812 201107333 521 False 797.0 797 94.264 592 1112 1 chr6A.!!$F1 520
14 TraesCS1A01G229200 chr3D 209980099 209980622 523 False 737.0 737 92.205 387 907 1 chr3D.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.034756 TGGTTCCACCGACTGACATG 59.965 55.0 0.00 0.0 42.58 3.21 F
1239 1254 0.178992 CACCAAGGTGGAGAAGGCAA 60.179 55.0 11.43 0.0 40.96 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 1336 0.325933 CCTCTCATCACAGGGCAACA 59.674 55.000 0.0 0.0 39.74 3.33 R
2106 2143 1.475682 GGAGTAGATGACCGAACCGTT 59.524 52.381 0.0 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.062183 CCGACCTTACACGTACGC 57.938 61.111 16.72 0.00 0.00 4.42
18 19 1.503542 CCGACCTTACACGTACGCT 59.496 57.895 16.72 2.91 0.00 5.07
19 20 0.109597 CCGACCTTACACGTACGCTT 60.110 55.000 16.72 4.66 0.00 4.68
20 21 1.130373 CCGACCTTACACGTACGCTTA 59.870 52.381 16.72 3.53 0.00 3.09
21 22 2.169179 CGACCTTACACGTACGCTTAC 58.831 52.381 16.72 0.00 0.00 2.34
33 34 3.491581 CGCTTACGTGAGACTGGTT 57.508 52.632 12.13 0.00 33.53 3.67
34 35 1.337821 CGCTTACGTGAGACTGGTTC 58.662 55.000 12.13 0.00 33.53 3.62
35 36 1.711206 GCTTACGTGAGACTGGTTCC 58.289 55.000 12.13 0.00 0.00 3.62
36 37 1.000506 GCTTACGTGAGACTGGTTCCA 59.999 52.381 12.13 0.00 0.00 3.53
37 38 2.673833 CTTACGTGAGACTGGTTCCAC 58.326 52.381 0.00 0.00 0.00 4.02
38 39 0.963962 TACGTGAGACTGGTTCCACC 59.036 55.000 0.00 0.00 39.22 4.61
39 40 1.372997 CGTGAGACTGGTTCCACCG 60.373 63.158 0.00 0.00 42.58 4.94
40 41 1.802337 CGTGAGACTGGTTCCACCGA 61.802 60.000 0.00 0.00 42.58 4.69
41 42 0.319641 GTGAGACTGGTTCCACCGAC 60.320 60.000 0.00 0.00 42.58 4.79
42 43 0.469331 TGAGACTGGTTCCACCGACT 60.469 55.000 0.00 0.00 42.58 4.18
43 44 0.038159 GAGACTGGTTCCACCGACTG 60.038 60.000 0.00 0.00 42.58 3.51
44 45 0.469331 AGACTGGTTCCACCGACTGA 60.469 55.000 0.00 0.00 42.58 3.41
45 46 0.319641 GACTGGTTCCACCGACTGAC 60.320 60.000 0.00 0.00 42.58 3.51
46 47 1.046472 ACTGGTTCCACCGACTGACA 61.046 55.000 0.00 0.00 42.58 3.58
47 48 0.321671 CTGGTTCCACCGACTGACAT 59.678 55.000 0.00 0.00 42.58 3.06
48 49 0.034756 TGGTTCCACCGACTGACATG 59.965 55.000 0.00 0.00 42.58 3.21
49 50 1.298859 GGTTCCACCGACTGACATGC 61.299 60.000 0.00 0.00 0.00 4.06
50 51 0.602638 GTTCCACCGACTGACATGCA 60.603 55.000 0.00 0.00 0.00 3.96
51 52 0.602638 TTCCACCGACTGACATGCAC 60.603 55.000 0.00 0.00 0.00 4.57
52 53 1.004560 CCACCGACTGACATGCACT 60.005 57.895 0.00 0.00 0.00 4.40
53 54 0.246360 CCACCGACTGACATGCACTA 59.754 55.000 0.00 0.00 0.00 2.74
54 55 1.633561 CACCGACTGACATGCACTAG 58.366 55.000 0.00 0.00 0.00 2.57
55 56 1.067565 CACCGACTGACATGCACTAGT 60.068 52.381 0.00 0.00 0.00 2.57
56 57 1.618837 ACCGACTGACATGCACTAGTT 59.381 47.619 0.00 0.00 0.00 2.24
57 58 1.995484 CCGACTGACATGCACTAGTTG 59.005 52.381 0.00 0.00 0.00 3.16
69 70 2.991250 CACTAGTTGCATAAGGTGGCT 58.009 47.619 0.00 0.00 0.00 4.75
70 71 4.137116 CACTAGTTGCATAAGGTGGCTA 57.863 45.455 0.00 0.00 0.00 3.93
71 72 4.122776 CACTAGTTGCATAAGGTGGCTAG 58.877 47.826 0.00 0.00 0.00 3.42
72 73 2.044123 AGTTGCATAAGGTGGCTAGC 57.956 50.000 6.04 6.04 0.00 3.42
73 74 0.657840 GTTGCATAAGGTGGCTAGCG 59.342 55.000 9.00 0.00 0.00 4.26
74 75 0.463654 TTGCATAAGGTGGCTAGCGG 60.464 55.000 9.00 0.00 0.00 5.52
75 76 1.598130 GCATAAGGTGGCTAGCGGG 60.598 63.158 9.00 0.00 0.00 6.13
76 77 1.830145 CATAAGGTGGCTAGCGGGT 59.170 57.895 9.00 0.00 0.00 5.28
77 78 0.532862 CATAAGGTGGCTAGCGGGTG 60.533 60.000 9.00 0.00 0.00 4.61
78 79 0.981277 ATAAGGTGGCTAGCGGGTGT 60.981 55.000 9.00 0.00 0.00 4.16
79 80 1.610554 TAAGGTGGCTAGCGGGTGTC 61.611 60.000 9.00 0.00 0.00 3.67
80 81 3.391382 GGTGGCTAGCGGGTGTCT 61.391 66.667 9.00 0.00 0.00 3.41
81 82 2.125512 GTGGCTAGCGGGTGTCTG 60.126 66.667 9.00 0.00 0.00 3.51
82 83 2.603473 TGGCTAGCGGGTGTCTGT 60.603 61.111 9.00 0.00 0.00 3.41
83 84 2.184579 GGCTAGCGGGTGTCTGTC 59.815 66.667 9.00 0.00 0.00 3.51
84 85 2.352032 GGCTAGCGGGTGTCTGTCT 61.352 63.158 9.00 0.00 0.00 3.41
85 86 1.139947 GCTAGCGGGTGTCTGTCTC 59.860 63.158 0.00 0.00 0.00 3.36
86 87 1.316706 GCTAGCGGGTGTCTGTCTCT 61.317 60.000 0.00 0.00 0.00 3.10
87 88 0.736053 CTAGCGGGTGTCTGTCTCTC 59.264 60.000 0.00 0.00 0.00 3.20
88 89 0.680280 TAGCGGGTGTCTGTCTCTCC 60.680 60.000 0.00 0.00 0.00 3.71
89 90 3.007973 GCGGGTGTCTGTCTCTCCC 62.008 68.421 0.00 0.00 35.22 4.30
90 91 1.606601 CGGGTGTCTGTCTCTCCCA 60.607 63.158 0.00 0.00 38.15 4.37
91 92 1.878656 CGGGTGTCTGTCTCTCCCAC 61.879 65.000 0.00 0.00 38.15 4.61
92 93 0.543174 GGGTGTCTGTCTCTCCCACT 60.543 60.000 0.00 0.00 38.15 4.00
93 94 1.343069 GGTGTCTGTCTCTCCCACTT 58.657 55.000 0.00 0.00 0.00 3.16
94 95 1.694696 GGTGTCTGTCTCTCCCACTTT 59.305 52.381 0.00 0.00 0.00 2.66
95 96 2.897969 GGTGTCTGTCTCTCCCACTTTA 59.102 50.000 0.00 0.00 0.00 1.85
96 97 3.056465 GGTGTCTGTCTCTCCCACTTTAG 60.056 52.174 0.00 0.00 0.00 1.85
97 98 3.574826 GTGTCTGTCTCTCCCACTTTAGT 59.425 47.826 0.00 0.00 0.00 2.24
98 99 3.827302 TGTCTGTCTCTCCCACTTTAGTC 59.173 47.826 0.00 0.00 0.00 2.59
99 100 3.082548 TCTGTCTCTCCCACTTTAGTCG 58.917 50.000 0.00 0.00 0.00 4.18
100 101 2.164624 CTGTCTCTCCCACTTTAGTCGG 59.835 54.545 0.00 0.00 0.00 4.79
101 102 2.224942 TGTCTCTCCCACTTTAGTCGGA 60.225 50.000 0.00 0.00 34.20 4.55
102 103 3.025262 GTCTCTCCCACTTTAGTCGGAT 58.975 50.000 0.00 0.00 34.84 4.18
103 104 3.067040 GTCTCTCCCACTTTAGTCGGATC 59.933 52.174 0.00 0.00 34.84 3.36
104 105 2.022195 TCTCCCACTTTAGTCGGATCG 58.978 52.381 0.00 0.00 34.84 3.69
105 106 1.067212 CTCCCACTTTAGTCGGATCGG 59.933 57.143 0.00 0.00 34.84 4.18
106 107 1.108776 CCCACTTTAGTCGGATCGGA 58.891 55.000 0.00 0.00 0.00 4.55
107 108 1.687123 CCCACTTTAGTCGGATCGGAT 59.313 52.381 6.23 0.00 0.00 4.18
108 109 2.102588 CCCACTTTAGTCGGATCGGATT 59.897 50.000 6.23 4.92 0.00 3.01
109 110 3.381949 CCACTTTAGTCGGATCGGATTC 58.618 50.000 6.23 0.00 0.00 2.52
110 111 3.043586 CACTTTAGTCGGATCGGATTCG 58.956 50.000 12.50 12.50 37.82 3.34
122 123 2.901249 TCGGATTCGATGAAAAGGGTC 58.099 47.619 0.00 0.00 40.88 4.46
123 124 1.940613 CGGATTCGATGAAAAGGGTCC 59.059 52.381 0.00 0.00 39.00 4.46
124 125 2.420129 CGGATTCGATGAAAAGGGTCCT 60.420 50.000 0.00 0.00 39.00 3.85
125 126 3.621558 GGATTCGATGAAAAGGGTCCTT 58.378 45.455 0.00 0.00 37.98 3.36
126 127 4.682320 CGGATTCGATGAAAAGGGTCCTTA 60.682 45.833 2.30 0.00 39.00 2.69
127 128 5.377478 GGATTCGATGAAAAGGGTCCTTAT 58.623 41.667 2.30 0.00 34.84 1.73
128 129 5.239525 GGATTCGATGAAAAGGGTCCTTATG 59.760 44.000 2.30 0.00 34.84 1.90
129 130 5.429681 TTCGATGAAAAGGGTCCTTATGA 57.570 39.130 2.30 0.00 34.84 2.15
130 131 5.429681 TCGATGAAAAGGGTCCTTATGAA 57.570 39.130 2.30 0.00 34.84 2.57
131 132 5.428253 TCGATGAAAAGGGTCCTTATGAAG 58.572 41.667 2.30 0.00 34.84 3.02
148 149 8.360390 CCTTATGAAGGGTAAATAGAAATTGGC 58.640 37.037 0.00 0.00 45.27 4.52
149 150 8.830915 TTATGAAGGGTAAATAGAAATTGGCA 57.169 30.769 0.00 0.00 0.00 4.92
150 151 7.919385 ATGAAGGGTAAATAGAAATTGGCAT 57.081 32.000 0.00 0.00 0.00 4.40
152 153 9.605951 ATGAAGGGTAAATAGAAATTGGCATAT 57.394 29.630 0.00 0.00 0.00 1.78
153 154 9.077885 TGAAGGGTAAATAGAAATTGGCATATC 57.922 33.333 0.00 0.00 0.00 1.63
154 155 9.077885 GAAGGGTAAATAGAAATTGGCATATCA 57.922 33.333 0.00 0.00 0.00 2.15
155 156 8.409358 AGGGTAAATAGAAATTGGCATATCAC 57.591 34.615 0.00 0.00 0.00 3.06
156 157 7.174946 AGGGTAAATAGAAATTGGCATATCACG 59.825 37.037 0.00 0.00 0.00 4.35
157 158 7.040686 GGGTAAATAGAAATTGGCATATCACGT 60.041 37.037 0.00 0.00 0.00 4.49
158 159 8.349983 GGTAAATAGAAATTGGCATATCACGTT 58.650 33.333 0.00 0.00 0.00 3.99
159 160 9.169468 GTAAATAGAAATTGGCATATCACGTTG 57.831 33.333 0.00 0.00 0.00 4.10
160 161 6.942532 ATAGAAATTGGCATATCACGTTGT 57.057 33.333 0.00 0.00 0.00 3.32
161 162 4.985413 AGAAATTGGCATATCACGTTGTG 58.015 39.130 0.00 0.00 34.45 3.33
162 163 3.781079 AATTGGCATATCACGTTGTGG 57.219 42.857 0.00 0.00 33.87 4.17
163 164 2.192664 TTGGCATATCACGTTGTGGT 57.807 45.000 0.00 0.00 33.87 4.16
164 165 2.192664 TGGCATATCACGTTGTGGTT 57.807 45.000 0.00 0.00 33.87 3.67
165 166 2.509569 TGGCATATCACGTTGTGGTTT 58.490 42.857 0.00 0.00 33.87 3.27
166 167 2.887783 TGGCATATCACGTTGTGGTTTT 59.112 40.909 0.00 0.00 33.87 2.43
167 168 3.241701 GGCATATCACGTTGTGGTTTTG 58.758 45.455 0.00 0.00 33.87 2.44
168 169 3.241701 GCATATCACGTTGTGGTTTTGG 58.758 45.455 0.00 0.00 33.87 3.28
169 170 3.241701 CATATCACGTTGTGGTTTTGGC 58.758 45.455 0.00 0.00 33.87 4.52
170 171 1.107114 ATCACGTTGTGGTTTTGGCA 58.893 45.000 0.00 0.00 33.87 4.92
171 172 1.107114 TCACGTTGTGGTTTTGGCAT 58.893 45.000 0.00 0.00 33.87 4.40
172 173 2.298610 TCACGTTGTGGTTTTGGCATA 58.701 42.857 0.00 0.00 33.87 3.14
173 174 2.292016 TCACGTTGTGGTTTTGGCATAG 59.708 45.455 0.00 0.00 33.87 2.23
174 175 1.611491 ACGTTGTGGTTTTGGCATAGG 59.389 47.619 0.00 0.00 0.00 2.57
175 176 1.611491 CGTTGTGGTTTTGGCATAGGT 59.389 47.619 0.00 0.00 0.00 3.08
176 177 2.814919 CGTTGTGGTTTTGGCATAGGTA 59.185 45.455 0.00 0.00 0.00 3.08
177 178 3.253677 CGTTGTGGTTTTGGCATAGGTAA 59.746 43.478 0.00 0.00 0.00 2.85
178 179 4.614993 CGTTGTGGTTTTGGCATAGGTAAG 60.615 45.833 0.00 0.00 0.00 2.34
179 180 4.374689 TGTGGTTTTGGCATAGGTAAGA 57.625 40.909 0.00 0.00 0.00 2.10
180 181 4.730966 TGTGGTTTTGGCATAGGTAAGAA 58.269 39.130 0.00 0.00 0.00 2.52
181 182 5.141182 TGTGGTTTTGGCATAGGTAAGAAA 58.859 37.500 0.00 0.00 0.00 2.52
182 183 5.777732 TGTGGTTTTGGCATAGGTAAGAAAT 59.222 36.000 0.00 0.00 0.00 2.17
183 184 6.099341 GTGGTTTTGGCATAGGTAAGAAATG 58.901 40.000 0.00 0.00 0.00 2.32
184 185 5.777732 TGGTTTTGGCATAGGTAAGAAATGT 59.222 36.000 0.00 0.00 0.00 2.71
185 186 6.268847 TGGTTTTGGCATAGGTAAGAAATGTT 59.731 34.615 0.00 0.00 0.00 2.71
186 187 6.811665 GGTTTTGGCATAGGTAAGAAATGTTC 59.188 38.462 0.00 0.00 0.00 3.18
187 188 7.309805 GGTTTTGGCATAGGTAAGAAATGTTCT 60.310 37.037 0.00 0.00 43.15 3.01
203 204 9.959721 AGAAATGTTCTTGCTAGAAACCTATAA 57.040 29.630 12.25 0.00 41.86 0.98
204 205 9.989869 GAAATGTTCTTGCTAGAAACCTATAAC 57.010 33.333 12.25 0.00 41.86 1.89
205 206 9.515226 AAATGTTCTTGCTAGAAACCTATAACA 57.485 29.630 12.25 5.00 41.86 2.41
206 207 8.723942 ATGTTCTTGCTAGAAACCTATAACAG 57.276 34.615 12.25 0.00 41.86 3.16
207 208 6.594159 TGTTCTTGCTAGAAACCTATAACAGC 59.406 38.462 12.25 0.00 41.86 4.40
208 209 5.671493 TCTTGCTAGAAACCTATAACAGCC 58.329 41.667 0.00 0.00 0.00 4.85
209 210 5.188948 TCTTGCTAGAAACCTATAACAGCCA 59.811 40.000 0.00 0.00 0.00 4.75
210 211 4.766375 TGCTAGAAACCTATAACAGCCAC 58.234 43.478 0.00 0.00 0.00 5.01
211 212 3.802685 GCTAGAAACCTATAACAGCCACG 59.197 47.826 0.00 0.00 0.00 4.94
212 213 3.975168 AGAAACCTATAACAGCCACGT 57.025 42.857 0.00 0.00 0.00 4.49
213 214 5.450965 GCTAGAAACCTATAACAGCCACGTA 60.451 44.000 0.00 0.00 0.00 3.57
214 215 5.410355 AGAAACCTATAACAGCCACGTAA 57.590 39.130 0.00 0.00 0.00 3.18
215 216 5.797051 AGAAACCTATAACAGCCACGTAAA 58.203 37.500 0.00 0.00 0.00 2.01
216 217 6.232692 AGAAACCTATAACAGCCACGTAAAA 58.767 36.000 0.00 0.00 0.00 1.52
217 218 6.711645 AGAAACCTATAACAGCCACGTAAAAA 59.288 34.615 0.00 0.00 0.00 1.94
218 219 5.868043 ACCTATAACAGCCACGTAAAAAC 57.132 39.130 0.00 0.00 0.00 2.43
219 220 5.554070 ACCTATAACAGCCACGTAAAAACT 58.446 37.500 0.00 0.00 0.00 2.66
220 221 5.999600 ACCTATAACAGCCACGTAAAAACTT 59.000 36.000 0.00 0.00 0.00 2.66
221 222 6.072893 ACCTATAACAGCCACGTAAAAACTTG 60.073 38.462 0.00 0.00 0.00 3.16
222 223 2.485266 ACAGCCACGTAAAAACTTGC 57.515 45.000 0.00 0.00 0.00 4.01
223 224 1.746220 ACAGCCACGTAAAAACTTGCA 59.254 42.857 0.00 0.00 0.00 4.08
224 225 2.164624 ACAGCCACGTAAAAACTTGCAA 59.835 40.909 0.00 0.00 0.00 4.08
225 226 2.533942 CAGCCACGTAAAAACTTGCAAC 59.466 45.455 0.00 0.00 0.00 4.17
226 227 2.164624 AGCCACGTAAAAACTTGCAACA 59.835 40.909 0.00 0.00 0.00 3.33
227 228 2.924290 GCCACGTAAAAACTTGCAACAA 59.076 40.909 0.00 0.00 0.00 2.83
228 229 3.241836 GCCACGTAAAAACTTGCAACAAC 60.242 43.478 0.00 0.00 0.00 3.32
229 230 3.921021 CCACGTAAAAACTTGCAACAACA 59.079 39.130 0.00 0.00 0.00 3.33
230 231 4.386049 CCACGTAAAAACTTGCAACAACAA 59.614 37.500 0.00 0.00 0.00 2.83
231 232 5.062809 CCACGTAAAAACTTGCAACAACAAT 59.937 36.000 0.00 0.00 0.00 2.71
232 233 6.401581 CCACGTAAAAACTTGCAACAACAATT 60.402 34.615 0.00 0.00 0.00 2.32
233 234 7.201444 CCACGTAAAAACTTGCAACAACAATTA 60.201 33.333 0.00 0.00 0.00 1.40
234 235 7.838879 CACGTAAAAACTTGCAACAACAATTAG 59.161 33.333 0.00 0.00 0.00 1.73
235 236 7.755822 ACGTAAAAACTTGCAACAACAATTAGA 59.244 29.630 0.00 0.00 0.00 2.10
236 237 8.259194 CGTAAAAACTTGCAACAACAATTAGAG 58.741 33.333 0.00 0.00 0.00 2.43
237 238 7.538303 AAAAACTTGCAACAACAATTAGAGG 57.462 32.000 0.00 0.00 0.00 3.69
238 239 6.463995 AAACTTGCAACAACAATTAGAGGA 57.536 33.333 0.00 0.00 0.00 3.71
239 240 5.438761 ACTTGCAACAACAATTAGAGGAC 57.561 39.130 0.00 0.00 0.00 3.85
240 241 4.024048 ACTTGCAACAACAATTAGAGGACG 60.024 41.667 0.00 0.00 0.00 4.79
241 242 3.472652 TGCAACAACAATTAGAGGACGT 58.527 40.909 0.00 0.00 0.00 4.34
242 243 3.496884 TGCAACAACAATTAGAGGACGTC 59.503 43.478 7.13 7.13 0.00 4.34
243 244 3.746492 GCAACAACAATTAGAGGACGTCT 59.254 43.478 16.46 2.78 39.59 4.18
244 245 4.927425 GCAACAACAATTAGAGGACGTCTA 59.073 41.667 16.46 0.69 36.64 2.59
255 256 5.986004 AGAGGACGTCTAACTTGTTTTTG 57.014 39.130 16.46 0.00 31.71 2.44
256 257 4.272748 AGAGGACGTCTAACTTGTTTTTGC 59.727 41.667 16.46 0.00 31.71 3.68
257 258 3.942748 AGGACGTCTAACTTGTTTTTGCA 59.057 39.130 16.46 0.00 0.00 4.08
258 259 4.035208 AGGACGTCTAACTTGTTTTTGCAG 59.965 41.667 16.46 0.00 0.00 4.41
259 260 3.691498 ACGTCTAACTTGTTTTTGCAGC 58.309 40.909 0.00 0.00 0.00 5.25
260 261 3.127895 ACGTCTAACTTGTTTTTGCAGCA 59.872 39.130 0.00 0.00 0.00 4.41
261 262 4.202010 ACGTCTAACTTGTTTTTGCAGCAT 60.202 37.500 0.00 0.00 0.00 3.79
262 263 5.008217 ACGTCTAACTTGTTTTTGCAGCATA 59.992 36.000 0.00 0.00 0.00 3.14
263 264 6.086222 CGTCTAACTTGTTTTTGCAGCATAT 58.914 36.000 0.00 0.00 0.00 1.78
264 265 6.032775 CGTCTAACTTGTTTTTGCAGCATATG 59.967 38.462 0.00 0.00 0.00 1.78
265 266 6.863126 GTCTAACTTGTTTTTGCAGCATATGT 59.137 34.615 4.29 0.00 0.00 2.29
266 267 7.061094 GTCTAACTTGTTTTTGCAGCATATGTC 59.939 37.037 4.29 0.00 0.00 3.06
267 268 4.229096 ACTTGTTTTTGCAGCATATGTCG 58.771 39.130 4.29 0.00 0.00 4.35
268 269 3.913548 TGTTTTTGCAGCATATGTCGT 57.086 38.095 4.29 0.00 0.00 4.34
269 270 3.563508 TGTTTTTGCAGCATATGTCGTG 58.436 40.909 4.29 1.34 0.00 4.35
270 271 3.004210 TGTTTTTGCAGCATATGTCGTGT 59.996 39.130 4.29 0.00 0.00 4.49
271 272 2.898181 TTTGCAGCATATGTCGTGTG 57.102 45.000 4.29 0.00 0.00 3.82
272 273 2.091852 TTGCAGCATATGTCGTGTGA 57.908 45.000 4.29 0.00 0.00 3.58
273 274 2.314323 TGCAGCATATGTCGTGTGAT 57.686 45.000 4.29 0.00 0.00 3.06
274 275 1.935199 TGCAGCATATGTCGTGTGATG 59.065 47.619 4.29 2.92 38.24 3.07
275 276 1.935873 GCAGCATATGTCGTGTGATGT 59.064 47.619 8.57 0.00 37.61 3.06
276 277 2.286008 GCAGCATATGTCGTGTGATGTG 60.286 50.000 8.57 0.00 37.61 3.21
277 278 3.189285 CAGCATATGTCGTGTGATGTGA 58.811 45.455 4.29 0.00 31.60 3.58
278 279 3.805971 CAGCATATGTCGTGTGATGTGAT 59.194 43.478 4.29 0.00 31.60 3.06
279 280 4.984161 CAGCATATGTCGTGTGATGTGATA 59.016 41.667 4.29 0.00 31.60 2.15
280 281 5.636543 CAGCATATGTCGTGTGATGTGATAT 59.363 40.000 4.29 0.00 31.60 1.63
281 282 5.636543 AGCATATGTCGTGTGATGTGATATG 59.363 40.000 4.29 0.00 0.00 1.78
282 283 5.163923 GCATATGTCGTGTGATGTGATATGG 60.164 44.000 4.29 0.00 0.00 2.74
283 284 2.549926 TGTCGTGTGATGTGATATGGC 58.450 47.619 0.00 0.00 0.00 4.40
284 285 1.867233 GTCGTGTGATGTGATATGGCC 59.133 52.381 0.00 0.00 0.00 5.36
285 286 1.484240 TCGTGTGATGTGATATGGCCA 59.516 47.619 8.56 8.56 0.00 5.36
286 287 2.093235 TCGTGTGATGTGATATGGCCAA 60.093 45.455 10.96 0.00 0.00 4.52
287 288 2.682352 CGTGTGATGTGATATGGCCAAA 59.318 45.455 10.96 0.00 0.00 3.28
288 289 3.128415 CGTGTGATGTGATATGGCCAAAA 59.872 43.478 10.96 0.12 0.00 2.44
289 290 4.675510 GTGTGATGTGATATGGCCAAAAG 58.324 43.478 10.96 0.00 0.00 2.27
290 291 3.700539 TGTGATGTGATATGGCCAAAAGG 59.299 43.478 10.96 0.00 0.00 3.11
291 292 3.953612 GTGATGTGATATGGCCAAAAGGA 59.046 43.478 10.96 0.00 0.00 3.36
292 293 4.586001 GTGATGTGATATGGCCAAAAGGAT 59.414 41.667 10.96 0.00 0.00 3.24
293 294 4.585581 TGATGTGATATGGCCAAAAGGATG 59.414 41.667 10.96 0.00 0.00 3.51
294 295 3.979911 TGTGATATGGCCAAAAGGATGT 58.020 40.909 10.96 0.00 0.00 3.06
295 296 3.700539 TGTGATATGGCCAAAAGGATGTG 59.299 43.478 10.96 0.00 0.00 3.21
296 297 3.953612 GTGATATGGCCAAAAGGATGTGA 59.046 43.478 10.96 0.00 0.00 3.58
297 298 4.586001 GTGATATGGCCAAAAGGATGTGAT 59.414 41.667 10.96 0.00 0.00 3.06
298 299 4.585581 TGATATGGCCAAAAGGATGTGATG 59.414 41.667 10.96 0.00 0.00 3.07
299 300 2.601240 TGGCCAAAAGGATGTGATGA 57.399 45.000 0.61 0.00 0.00 2.92
300 301 2.886913 TGGCCAAAAGGATGTGATGAA 58.113 42.857 0.61 0.00 0.00 2.57
301 302 3.443052 TGGCCAAAAGGATGTGATGAAT 58.557 40.909 0.61 0.00 0.00 2.57
302 303 3.196039 TGGCCAAAAGGATGTGATGAATG 59.804 43.478 0.61 0.00 0.00 2.67
303 304 3.448301 GGCCAAAAGGATGTGATGAATGA 59.552 43.478 0.00 0.00 0.00 2.57
304 305 4.100498 GGCCAAAAGGATGTGATGAATGAT 59.900 41.667 0.00 0.00 0.00 2.45
305 306 5.302568 GGCCAAAAGGATGTGATGAATGATA 59.697 40.000 0.00 0.00 0.00 2.15
306 307 6.014840 GGCCAAAAGGATGTGATGAATGATAT 60.015 38.462 0.00 0.00 0.00 1.63
307 308 7.177216 GGCCAAAAGGATGTGATGAATGATATA 59.823 37.037 0.00 0.00 0.00 0.86
308 309 8.746530 GCCAAAAGGATGTGATGAATGATATAT 58.253 33.333 0.00 0.00 0.00 0.86
314 315 9.614792 AGGATGTGATGAATGATATATGTGATG 57.385 33.333 0.00 0.00 0.00 3.07
315 316 9.392259 GGATGTGATGAATGATATATGTGATGT 57.608 33.333 0.00 0.00 0.00 3.06
332 333 8.919777 ATGTGATGTATGAGATTGATCATGTT 57.080 30.769 0.00 0.00 40.16 2.71
333 334 8.374327 TGTGATGTATGAGATTGATCATGTTC 57.626 34.615 0.00 0.00 40.16 3.18
334 335 8.208903 TGTGATGTATGAGATTGATCATGTTCT 58.791 33.333 0.00 0.00 40.16 3.01
335 336 9.053840 GTGATGTATGAGATTGATCATGTTCTT 57.946 33.333 0.00 0.00 40.16 2.52
336 337 9.052759 TGATGTATGAGATTGATCATGTTCTTG 57.947 33.333 0.00 0.00 40.16 3.02
337 338 8.975663 ATGTATGAGATTGATCATGTTCTTGT 57.024 30.769 0.00 0.00 40.16 3.16
339 340 9.889128 TGTATGAGATTGATCATGTTCTTGTAA 57.111 29.630 0.00 0.00 40.16 2.41
343 344 9.551734 TGAGATTGATCATGTTCTTGTAATAGG 57.448 33.333 0.00 0.00 0.00 2.57
344 345 9.770097 GAGATTGATCATGTTCTTGTAATAGGA 57.230 33.333 0.00 0.00 0.00 2.94
348 349 9.904198 TTGATCATGTTCTTGTAATAGGAATCA 57.096 29.630 0.00 0.00 0.00 2.57
349 350 9.330063 TGATCATGTTCTTGTAATAGGAATCAC 57.670 33.333 5.42 0.00 0.00 3.06
350 351 7.770801 TCATGTTCTTGTAATAGGAATCACG 57.229 36.000 0.00 0.00 0.00 4.35
351 352 7.552459 TCATGTTCTTGTAATAGGAATCACGA 58.448 34.615 0.00 0.00 0.00 4.35
352 353 7.491372 TCATGTTCTTGTAATAGGAATCACGAC 59.509 37.037 0.00 0.00 0.00 4.34
353 354 6.931838 TGTTCTTGTAATAGGAATCACGACT 58.068 36.000 0.00 0.00 0.00 4.18
354 355 7.383687 TGTTCTTGTAATAGGAATCACGACTT 58.616 34.615 0.00 0.00 0.00 3.01
355 356 7.330946 TGTTCTTGTAATAGGAATCACGACTTG 59.669 37.037 0.00 0.00 0.00 3.16
356 357 5.810587 TCTTGTAATAGGAATCACGACTTGC 59.189 40.000 0.00 0.00 0.00 4.01
357 358 5.079689 TGTAATAGGAATCACGACTTGCA 57.920 39.130 0.00 0.00 0.00 4.08
358 359 5.670485 TGTAATAGGAATCACGACTTGCAT 58.330 37.500 0.00 0.00 0.00 3.96
359 360 5.523552 TGTAATAGGAATCACGACTTGCATG 59.476 40.000 0.00 0.00 0.00 4.06
360 361 2.479566 AGGAATCACGACTTGCATGT 57.520 45.000 4.68 4.68 0.00 3.21
361 362 2.350522 AGGAATCACGACTTGCATGTC 58.649 47.619 19.96 19.96 0.00 3.06
371 372 4.705554 GACTTGCATGTCGATGAGTATG 57.294 45.455 16.02 0.00 0.00 2.39
372 373 4.363138 GACTTGCATGTCGATGAGTATGA 58.637 43.478 16.02 0.00 0.00 2.15
373 374 4.115516 ACTTGCATGTCGATGAGTATGAC 58.884 43.478 0.00 0.00 0.00 3.06
374 375 3.799281 TGCATGTCGATGAGTATGACA 57.201 42.857 0.00 0.00 45.71 3.58
375 376 4.122143 TGCATGTCGATGAGTATGACAA 57.878 40.909 0.00 0.00 44.90 3.18
376 377 3.865164 TGCATGTCGATGAGTATGACAAC 59.135 43.478 0.00 0.00 44.90 3.32
377 378 3.246226 GCATGTCGATGAGTATGACAACC 59.754 47.826 0.00 0.00 44.90 3.77
378 379 3.145212 TGTCGATGAGTATGACAACCG 57.855 47.619 0.00 0.00 39.50 4.44
379 380 2.159296 TGTCGATGAGTATGACAACCGG 60.159 50.000 0.00 0.00 39.50 5.28
380 381 1.202371 TCGATGAGTATGACAACCGGC 60.202 52.381 0.00 0.00 0.00 6.13
381 382 1.470805 CGATGAGTATGACAACCGGCA 60.471 52.381 0.00 0.00 0.00 5.69
382 383 2.205074 GATGAGTATGACAACCGGCAG 58.795 52.381 0.00 0.00 0.00 4.85
383 384 0.249120 TGAGTATGACAACCGGCAGG 59.751 55.000 0.00 0.00 45.13 4.85
384 385 0.535335 GAGTATGACAACCGGCAGGA 59.465 55.000 10.86 0.00 41.02 3.86
385 386 0.537188 AGTATGACAACCGGCAGGAG 59.463 55.000 10.86 4.09 41.02 3.69
386 387 1.090052 GTATGACAACCGGCAGGAGC 61.090 60.000 10.86 0.00 41.02 4.70
405 406 4.103311 GGAGCCATCACTACTAGGGAAAAT 59.897 45.833 0.00 0.00 27.39 1.82
560 567 2.203640 TGGTCTCTGTCGTGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
563 570 2.680352 TCTCTGTCGTGCCCTCCC 60.680 66.667 0.00 0.00 0.00 4.30
601 608 3.838244 AGCGAGGATTATAAACCTGCA 57.162 42.857 24.37 0.00 36.57 4.41
730 737 1.837439 AGTCCACCACTGTTTGTCTCA 59.163 47.619 0.00 0.00 32.26 3.27
731 738 2.158900 AGTCCACCACTGTTTGTCTCAG 60.159 50.000 0.00 0.00 38.68 3.35
801 815 1.388174 TCCACCTCCTCTCTTCTCCT 58.612 55.000 0.00 0.00 0.00 3.69
829 843 0.193069 CCTCATCTCCCTCCCATCCT 59.807 60.000 0.00 0.00 0.00 3.24
1058 1073 1.964373 GGCCGTCAACACCATCGTT 60.964 57.895 0.00 0.00 0.00 3.85
1067 1082 0.322187 ACACCATCGTTAACCTGGCC 60.322 55.000 17.63 0.00 33.12 5.36
1187 1202 7.776030 TGGTTTTGTTCAAAGATAAGTGACCTA 59.224 33.333 10.63 0.00 0.00 3.08
1239 1254 0.178992 CACCAAGGTGGAGAAGGCAA 60.179 55.000 11.43 0.00 40.96 4.52
1262 1277 0.530744 TCTTCTACGAGCGTGGCAAT 59.469 50.000 5.69 0.00 0.00 3.56
1286 1302 1.599071 CTCGCAAACTTCTTGTCTGCA 59.401 47.619 0.00 0.00 0.00 4.41
1313 1329 0.947660 CTTCTGCTTCTGCTGCGTCA 60.948 55.000 0.00 0.00 40.48 4.35
1419 1455 1.134220 GCTCTCTCTCTCTCTCGGGAA 60.134 57.143 0.00 0.00 0.00 3.97
1426 1462 2.035155 TCTCTCGGGAAGACGCCA 59.965 61.111 0.00 0.00 0.00 5.69
1479 1515 1.207488 TCTGGATCCACCCCCACAAG 61.207 60.000 11.44 0.00 38.00 3.16
1634 1670 8.669243 CATTAGAGAGGACAAGTCAATAAAACC 58.331 37.037 2.29 0.00 0.00 3.27
1688 1724 7.814587 GGAGAAAAGTTTGATATTTTCCTGTGG 59.185 37.037 6.75 0.00 43.34 4.17
1808 1844 1.942657 GCAGACTTGACTTTGCACTCA 59.057 47.619 0.00 0.00 36.59 3.41
1820 1856 3.378911 TTGCACTCATACGTTCAGACA 57.621 42.857 0.00 0.00 0.00 3.41
1903 1939 6.064060 CCATTTCTAAGCATCACCAATCCTA 58.936 40.000 0.00 0.00 0.00 2.94
2106 2143 1.065199 GGGACATCAACATCAGCCTCA 60.065 52.381 0.00 0.00 0.00 3.86
2157 2198 1.906574 ACTCCCTGCAAAAGGTCGATA 59.093 47.619 0.00 0.00 45.78 2.92
2172 2215 6.235231 AGGTCGATATCTCTCTCTATCTCC 57.765 45.833 0.34 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.169179 CGTAAGCGTACGTGTAAGGTC 58.831 52.381 21.78 0.00 46.49 3.85
3 4 2.247311 CGTAAGCGTACGTGTAAGGT 57.753 50.000 21.78 0.00 46.49 3.50
15 16 1.337821 GAACCAGTCTCACGTAAGCG 58.662 55.000 0.00 0.00 45.62 4.68
16 17 1.000506 TGGAACCAGTCTCACGTAAGC 59.999 52.381 0.00 0.00 45.62 3.09
18 19 2.806608 GTGGAACCAGTCTCACGTAA 57.193 50.000 0.00 0.00 0.00 3.18
31 32 0.602638 TGCATGTCAGTCGGTGGAAC 60.603 55.000 0.00 0.00 0.00 3.62
32 33 0.602638 GTGCATGTCAGTCGGTGGAA 60.603 55.000 0.00 0.00 0.00 3.53
33 34 1.005037 GTGCATGTCAGTCGGTGGA 60.005 57.895 0.00 0.00 0.00 4.02
34 35 0.246360 TAGTGCATGTCAGTCGGTGG 59.754 55.000 0.00 0.00 0.00 4.61
35 36 1.067565 ACTAGTGCATGTCAGTCGGTG 60.068 52.381 0.00 0.00 0.00 4.94
36 37 1.257743 ACTAGTGCATGTCAGTCGGT 58.742 50.000 0.00 0.00 0.00 4.69
37 38 1.995484 CAACTAGTGCATGTCAGTCGG 59.005 52.381 0.00 0.00 0.00 4.79
49 50 2.991250 AGCCACCTTATGCAACTAGTG 58.009 47.619 0.00 0.00 0.00 2.74
50 51 3.432326 GCTAGCCACCTTATGCAACTAGT 60.432 47.826 2.29 0.00 31.94 2.57
51 52 3.134458 GCTAGCCACCTTATGCAACTAG 58.866 50.000 2.29 0.00 32.24 2.57
52 53 2.483013 CGCTAGCCACCTTATGCAACTA 60.483 50.000 9.66 0.00 0.00 2.24
53 54 1.743772 CGCTAGCCACCTTATGCAACT 60.744 52.381 9.66 0.00 0.00 3.16
54 55 0.657840 CGCTAGCCACCTTATGCAAC 59.342 55.000 9.66 0.00 0.00 4.17
55 56 0.463654 CCGCTAGCCACCTTATGCAA 60.464 55.000 9.66 0.00 0.00 4.08
56 57 1.146041 CCGCTAGCCACCTTATGCA 59.854 57.895 9.66 0.00 0.00 3.96
57 58 1.598130 CCCGCTAGCCACCTTATGC 60.598 63.158 9.66 0.00 0.00 3.14
58 59 0.532862 CACCCGCTAGCCACCTTATG 60.533 60.000 9.66 0.00 0.00 1.90
59 60 0.981277 ACACCCGCTAGCCACCTTAT 60.981 55.000 9.66 0.00 0.00 1.73
60 61 1.610554 GACACCCGCTAGCCACCTTA 61.611 60.000 9.66 0.00 0.00 2.69
61 62 2.928396 ACACCCGCTAGCCACCTT 60.928 61.111 9.66 0.00 0.00 3.50
62 63 3.391382 GACACCCGCTAGCCACCT 61.391 66.667 9.66 0.00 0.00 4.00
63 64 3.391382 AGACACCCGCTAGCCACC 61.391 66.667 9.66 0.00 0.00 4.61
64 65 2.125512 CAGACACCCGCTAGCCAC 60.126 66.667 9.66 0.00 0.00 5.01
65 66 2.603473 ACAGACACCCGCTAGCCA 60.603 61.111 9.66 0.00 0.00 4.75
66 67 2.184579 GACAGACACCCGCTAGCC 59.815 66.667 9.66 0.00 0.00 3.93
67 68 1.139947 GAGACAGACACCCGCTAGC 59.860 63.158 4.06 4.06 0.00 3.42
68 69 0.736053 GAGAGACAGACACCCGCTAG 59.264 60.000 0.00 0.00 0.00 3.42
69 70 0.680280 GGAGAGACAGACACCCGCTA 60.680 60.000 0.00 0.00 0.00 4.26
70 71 1.979693 GGAGAGACAGACACCCGCT 60.980 63.158 0.00 0.00 0.00 5.52
71 72 2.574399 GGAGAGACAGACACCCGC 59.426 66.667 0.00 0.00 0.00 6.13
72 73 1.606601 TGGGAGAGACAGACACCCG 60.607 63.158 0.00 0.00 43.04 5.28
73 74 0.543174 AGTGGGAGAGACAGACACCC 60.543 60.000 0.00 0.00 40.79 4.61
74 75 1.343069 AAGTGGGAGAGACAGACACC 58.657 55.000 0.00 0.00 32.71 4.16
75 76 3.574826 ACTAAAGTGGGAGAGACAGACAC 59.425 47.826 0.00 0.00 0.00 3.67
76 77 3.827302 GACTAAAGTGGGAGAGACAGACA 59.173 47.826 0.00 0.00 0.00 3.41
77 78 3.119779 CGACTAAAGTGGGAGAGACAGAC 60.120 52.174 0.00 0.00 0.00 3.51
78 79 3.082548 CGACTAAAGTGGGAGAGACAGA 58.917 50.000 0.00 0.00 0.00 3.41
79 80 2.164624 CCGACTAAAGTGGGAGAGACAG 59.835 54.545 5.29 0.00 45.38 3.51
80 81 2.168496 CCGACTAAAGTGGGAGAGACA 58.832 52.381 5.29 0.00 45.38 3.41
81 82 2.444421 TCCGACTAAAGTGGGAGAGAC 58.556 52.381 9.54 0.00 45.95 3.36
82 83 2.893215 TCCGACTAAAGTGGGAGAGA 57.107 50.000 9.54 0.00 45.95 3.10
87 88 1.108776 TCCGATCCGACTAAAGTGGG 58.891 55.000 4.89 4.89 44.12 4.61
88 89 3.381949 GAATCCGATCCGACTAAAGTGG 58.618 50.000 0.00 0.00 0.00 4.00
89 90 3.043586 CGAATCCGATCCGACTAAAGTG 58.956 50.000 0.00 0.00 38.22 3.16
90 91 2.947652 TCGAATCCGATCCGACTAAAGT 59.052 45.455 0.00 0.00 40.30 2.66
91 92 3.620929 TCGAATCCGATCCGACTAAAG 57.379 47.619 0.00 0.00 40.30 1.85
100 101 9.773421 TAAGGACCCTTTTCATCGAATCCGATC 62.773 44.444 6.62 0.00 43.56 3.69
101 102 7.383824 AAGGACCCTTTTCATCGAATCCGAT 62.384 44.000 0.00 0.00 43.83 4.18
102 103 6.143986 AAGGACCCTTTTCATCGAATCCGA 62.144 45.833 0.00 0.00 40.27 4.55
103 104 1.940613 GGACCCTTTTCATCGAATCCG 59.059 52.381 0.00 0.00 37.07 4.18
104 105 3.283259 AGGACCCTTTTCATCGAATCC 57.717 47.619 0.00 0.00 0.00 3.01
105 106 6.055588 TCATAAGGACCCTTTTCATCGAATC 58.944 40.000 6.62 0.00 37.47 2.52
106 107 6.001449 TCATAAGGACCCTTTTCATCGAAT 57.999 37.500 6.62 0.00 37.47 3.34
107 108 5.429681 TCATAAGGACCCTTTTCATCGAA 57.570 39.130 6.62 0.00 37.47 3.71
108 109 5.428253 CTTCATAAGGACCCTTTTCATCGA 58.572 41.667 6.62 0.00 37.47 3.59
109 110 5.741388 CTTCATAAGGACCCTTTTCATCG 57.259 43.478 6.62 0.00 37.47 3.84
123 124 8.912988 TGCCAATTTCTATTTACCCTTCATAAG 58.087 33.333 0.00 0.00 0.00 1.73
124 125 8.830915 TGCCAATTTCTATTTACCCTTCATAA 57.169 30.769 0.00 0.00 0.00 1.90
126 127 7.919385 ATGCCAATTTCTATTTACCCTTCAT 57.081 32.000 0.00 0.00 0.00 2.57
127 128 9.077885 GATATGCCAATTTCTATTTACCCTTCA 57.922 33.333 0.00 0.00 0.00 3.02
128 129 9.077885 TGATATGCCAATTTCTATTTACCCTTC 57.922 33.333 0.00 0.00 0.00 3.46
129 130 8.860088 GTGATATGCCAATTTCTATTTACCCTT 58.140 33.333 0.00 0.00 0.00 3.95
130 131 7.174946 CGTGATATGCCAATTTCTATTTACCCT 59.825 37.037 0.00 0.00 0.00 4.34
131 132 7.040686 ACGTGATATGCCAATTTCTATTTACCC 60.041 37.037 0.00 0.00 0.00 3.69
132 133 7.871853 ACGTGATATGCCAATTTCTATTTACC 58.128 34.615 0.00 0.00 0.00 2.85
133 134 9.169468 CAACGTGATATGCCAATTTCTATTTAC 57.831 33.333 0.00 0.00 0.00 2.01
134 135 8.898761 ACAACGTGATATGCCAATTTCTATTTA 58.101 29.630 0.00 0.00 0.00 1.40
135 136 7.701924 CACAACGTGATATGCCAATTTCTATTT 59.298 33.333 0.00 0.00 35.23 1.40
136 137 7.195646 CACAACGTGATATGCCAATTTCTATT 58.804 34.615 0.00 0.00 35.23 1.73
137 138 6.238731 CCACAACGTGATATGCCAATTTCTAT 60.239 38.462 0.00 0.00 35.23 1.98
138 139 5.065859 CCACAACGTGATATGCCAATTTCTA 59.934 40.000 0.00 0.00 35.23 2.10
139 140 4.142403 CCACAACGTGATATGCCAATTTCT 60.142 41.667 0.00 0.00 35.23 2.52
140 141 4.104776 CCACAACGTGATATGCCAATTTC 58.895 43.478 0.00 0.00 35.23 2.17
141 142 3.509575 ACCACAACGTGATATGCCAATTT 59.490 39.130 0.00 0.00 35.23 1.82
142 143 3.088532 ACCACAACGTGATATGCCAATT 58.911 40.909 0.00 0.00 35.23 2.32
143 144 2.722094 ACCACAACGTGATATGCCAAT 58.278 42.857 0.00 0.00 35.23 3.16
144 145 2.192664 ACCACAACGTGATATGCCAA 57.807 45.000 0.00 0.00 35.23 4.52
145 146 2.192664 AACCACAACGTGATATGCCA 57.807 45.000 0.00 0.00 35.23 4.92
146 147 3.241701 CAAAACCACAACGTGATATGCC 58.758 45.455 0.00 0.00 35.23 4.40
147 148 3.241701 CCAAAACCACAACGTGATATGC 58.758 45.455 0.00 0.00 35.23 3.14
148 149 3.241701 GCCAAAACCACAACGTGATATG 58.758 45.455 0.00 0.00 35.23 1.78
149 150 2.887783 TGCCAAAACCACAACGTGATAT 59.112 40.909 0.00 0.00 35.23 1.63
150 151 2.298610 TGCCAAAACCACAACGTGATA 58.701 42.857 0.00 0.00 35.23 2.15
151 152 1.107114 TGCCAAAACCACAACGTGAT 58.893 45.000 0.00 0.00 35.23 3.06
152 153 1.107114 ATGCCAAAACCACAACGTGA 58.893 45.000 0.00 0.00 35.23 4.35
153 154 2.606795 CCTATGCCAAAACCACAACGTG 60.607 50.000 0.00 0.00 0.00 4.49
154 155 1.611491 CCTATGCCAAAACCACAACGT 59.389 47.619 0.00 0.00 0.00 3.99
155 156 1.611491 ACCTATGCCAAAACCACAACG 59.389 47.619 0.00 0.00 0.00 4.10
156 157 4.521256 TCTTACCTATGCCAAAACCACAAC 59.479 41.667 0.00 0.00 0.00 3.32
157 158 4.730966 TCTTACCTATGCCAAAACCACAA 58.269 39.130 0.00 0.00 0.00 3.33
158 159 4.374689 TCTTACCTATGCCAAAACCACA 57.625 40.909 0.00 0.00 0.00 4.17
159 160 5.715434 TTTCTTACCTATGCCAAAACCAC 57.285 39.130 0.00 0.00 0.00 4.16
160 161 5.777732 ACATTTCTTACCTATGCCAAAACCA 59.222 36.000 0.00 0.00 0.00 3.67
161 162 6.280855 ACATTTCTTACCTATGCCAAAACC 57.719 37.500 0.00 0.00 0.00 3.27
162 163 7.602753 AGAACATTTCTTACCTATGCCAAAAC 58.397 34.615 0.00 0.00 36.36 2.43
163 164 7.775053 AGAACATTTCTTACCTATGCCAAAA 57.225 32.000 0.00 0.00 36.36 2.44
177 178 9.959721 TTATAGGTTTCTAGCAAGAACATTTCT 57.040 29.630 0.00 0.00 41.48 2.52
178 179 9.989869 GTTATAGGTTTCTAGCAAGAACATTTC 57.010 33.333 0.00 0.00 41.48 2.17
179 180 9.515226 TGTTATAGGTTTCTAGCAAGAACATTT 57.485 29.630 0.00 0.00 41.48 2.32
180 181 9.167311 CTGTTATAGGTTTCTAGCAAGAACATT 57.833 33.333 0.00 0.00 41.48 2.71
181 182 7.281100 GCTGTTATAGGTTTCTAGCAAGAACAT 59.719 37.037 0.00 0.00 41.48 2.71
182 183 6.594159 GCTGTTATAGGTTTCTAGCAAGAACA 59.406 38.462 0.00 0.00 41.48 3.18
183 184 6.037281 GGCTGTTATAGGTTTCTAGCAAGAAC 59.963 42.308 0.00 0.00 41.48 3.01
184 185 6.113411 GGCTGTTATAGGTTTCTAGCAAGAA 58.887 40.000 0.00 0.00 40.03 2.52
185 186 5.188948 TGGCTGTTATAGGTTTCTAGCAAGA 59.811 40.000 0.00 0.00 0.00 3.02
186 187 5.294552 GTGGCTGTTATAGGTTTCTAGCAAG 59.705 44.000 0.00 0.00 0.00 4.01
187 188 5.183228 GTGGCTGTTATAGGTTTCTAGCAA 58.817 41.667 0.00 0.00 0.00 3.91
188 189 4.679639 CGTGGCTGTTATAGGTTTCTAGCA 60.680 45.833 0.00 0.00 0.00 3.49
189 190 3.802685 CGTGGCTGTTATAGGTTTCTAGC 59.197 47.826 0.00 0.00 0.00 3.42
190 191 5.007385 ACGTGGCTGTTATAGGTTTCTAG 57.993 43.478 0.00 0.00 0.00 2.43
191 192 6.528537 TTACGTGGCTGTTATAGGTTTCTA 57.471 37.500 0.00 0.00 0.00 2.10
192 193 3.975168 ACGTGGCTGTTATAGGTTTCT 57.025 42.857 0.00 0.00 0.00 2.52
193 194 6.484818 TTTTACGTGGCTGTTATAGGTTTC 57.515 37.500 0.00 0.00 0.00 2.78
194 195 6.487668 AGTTTTTACGTGGCTGTTATAGGTTT 59.512 34.615 0.00 0.00 0.00 3.27
195 196 5.999600 AGTTTTTACGTGGCTGTTATAGGTT 59.000 36.000 0.00 0.00 0.00 3.50
196 197 5.554070 AGTTTTTACGTGGCTGTTATAGGT 58.446 37.500 0.00 0.00 0.00 3.08
197 198 6.311723 CAAGTTTTTACGTGGCTGTTATAGG 58.688 40.000 0.00 0.00 0.00 2.57
198 199 5.793457 GCAAGTTTTTACGTGGCTGTTATAG 59.207 40.000 0.00 0.00 0.00 1.31
199 200 5.238868 TGCAAGTTTTTACGTGGCTGTTATA 59.761 36.000 0.00 0.00 0.00 0.98
200 201 4.036971 TGCAAGTTTTTACGTGGCTGTTAT 59.963 37.500 0.00 0.00 0.00 1.89
201 202 3.377485 TGCAAGTTTTTACGTGGCTGTTA 59.623 39.130 0.00 0.00 0.00 2.41
202 203 2.164624 TGCAAGTTTTTACGTGGCTGTT 59.835 40.909 0.00 0.00 0.00 3.16
203 204 1.746220 TGCAAGTTTTTACGTGGCTGT 59.254 42.857 0.00 0.00 0.00 4.40
204 205 2.483583 TGCAAGTTTTTACGTGGCTG 57.516 45.000 0.00 0.00 0.00 4.85
205 206 2.164624 TGTTGCAAGTTTTTACGTGGCT 59.835 40.909 0.00 0.00 0.00 4.75
206 207 2.531206 TGTTGCAAGTTTTTACGTGGC 58.469 42.857 0.00 0.00 0.00 5.01
207 208 3.921021 TGTTGTTGCAAGTTTTTACGTGG 59.079 39.130 0.00 0.00 0.00 4.94
208 209 5.502214 TTGTTGTTGCAAGTTTTTACGTG 57.498 34.783 0.00 0.00 0.00 4.49
209 210 6.713792 AATTGTTGTTGCAAGTTTTTACGT 57.286 29.167 0.00 0.00 0.00 3.57
210 211 8.109843 TCTAATTGTTGTTGCAAGTTTTTACG 57.890 30.769 0.00 0.00 0.00 3.18
211 212 8.539674 CCTCTAATTGTTGTTGCAAGTTTTTAC 58.460 33.333 0.00 0.00 0.00 2.01
212 213 8.470805 TCCTCTAATTGTTGTTGCAAGTTTTTA 58.529 29.630 0.00 0.00 0.00 1.52
213 214 7.277760 GTCCTCTAATTGTTGTTGCAAGTTTTT 59.722 33.333 0.00 0.00 0.00 1.94
214 215 6.756542 GTCCTCTAATTGTTGTTGCAAGTTTT 59.243 34.615 0.00 0.00 0.00 2.43
215 216 6.273071 GTCCTCTAATTGTTGTTGCAAGTTT 58.727 36.000 0.00 0.00 0.00 2.66
216 217 5.505654 CGTCCTCTAATTGTTGTTGCAAGTT 60.506 40.000 0.00 0.00 0.00 2.66
217 218 4.024048 CGTCCTCTAATTGTTGTTGCAAGT 60.024 41.667 0.00 0.00 0.00 3.16
218 219 4.024048 ACGTCCTCTAATTGTTGTTGCAAG 60.024 41.667 0.00 0.00 0.00 4.01
219 220 3.880490 ACGTCCTCTAATTGTTGTTGCAA 59.120 39.130 0.00 0.00 0.00 4.08
220 221 3.472652 ACGTCCTCTAATTGTTGTTGCA 58.527 40.909 0.00 0.00 0.00 4.08
221 222 3.746492 AGACGTCCTCTAATTGTTGTTGC 59.254 43.478 13.01 0.00 0.00 4.17
222 223 6.645415 AGTTAGACGTCCTCTAATTGTTGTTG 59.355 38.462 13.01 0.00 42.38 3.33
223 224 6.756221 AGTTAGACGTCCTCTAATTGTTGTT 58.244 36.000 13.01 0.00 42.38 2.83
224 225 6.342338 AGTTAGACGTCCTCTAATTGTTGT 57.658 37.500 13.01 0.00 42.38 3.32
225 226 6.645415 ACAAGTTAGACGTCCTCTAATTGTTG 59.355 38.462 13.01 11.43 42.38 3.33
226 227 6.756221 ACAAGTTAGACGTCCTCTAATTGTT 58.244 36.000 13.01 0.00 42.38 2.83
227 228 6.342338 ACAAGTTAGACGTCCTCTAATTGT 57.658 37.500 13.01 13.20 42.38 2.71
228 229 7.653767 AAACAAGTTAGACGTCCTCTAATTG 57.346 36.000 13.01 12.60 42.38 2.32
229 230 8.557029 CAAAAACAAGTTAGACGTCCTCTAATT 58.443 33.333 13.01 0.00 42.38 1.40
230 231 7.307811 GCAAAAACAAGTTAGACGTCCTCTAAT 60.308 37.037 13.01 0.00 42.38 1.73
231 232 6.018507 GCAAAAACAAGTTAGACGTCCTCTAA 60.019 38.462 13.01 1.46 38.89 2.10
232 233 5.464389 GCAAAAACAAGTTAGACGTCCTCTA 59.536 40.000 13.01 0.00 0.00 2.43
233 234 4.272748 GCAAAAACAAGTTAGACGTCCTCT 59.727 41.667 13.01 5.43 0.00 3.69
234 235 4.034742 TGCAAAAACAAGTTAGACGTCCTC 59.965 41.667 13.01 2.95 0.00 3.71
235 236 3.942748 TGCAAAAACAAGTTAGACGTCCT 59.057 39.130 13.01 0.00 0.00 3.85
236 237 4.279659 CTGCAAAAACAAGTTAGACGTCC 58.720 43.478 13.01 0.00 0.00 4.79
237 238 3.724257 GCTGCAAAAACAAGTTAGACGTC 59.276 43.478 7.70 7.70 0.00 4.34
238 239 3.127895 TGCTGCAAAAACAAGTTAGACGT 59.872 39.130 0.00 0.00 0.00 4.34
239 240 3.690422 TGCTGCAAAAACAAGTTAGACG 58.310 40.909 0.00 0.00 0.00 4.18
240 241 6.863126 ACATATGCTGCAAAAACAAGTTAGAC 59.137 34.615 6.36 0.00 0.00 2.59
241 242 6.980593 ACATATGCTGCAAAAACAAGTTAGA 58.019 32.000 6.36 0.00 0.00 2.10
242 243 6.032775 CGACATATGCTGCAAAAACAAGTTAG 59.967 38.462 6.36 0.00 0.00 2.34
243 244 5.855925 CGACATATGCTGCAAAAACAAGTTA 59.144 36.000 6.36 0.00 0.00 2.24
244 245 4.681025 CGACATATGCTGCAAAAACAAGTT 59.319 37.500 6.36 0.00 0.00 2.66
245 246 4.229096 CGACATATGCTGCAAAAACAAGT 58.771 39.130 6.36 0.00 0.00 3.16
246 247 4.088923 CACGACATATGCTGCAAAAACAAG 59.911 41.667 6.36 0.00 0.00 3.16
247 248 3.980134 CACGACATATGCTGCAAAAACAA 59.020 39.130 6.36 0.00 0.00 2.83
248 249 3.004210 ACACGACATATGCTGCAAAAACA 59.996 39.130 6.36 0.00 0.00 2.83
249 250 3.361644 CACACGACATATGCTGCAAAAAC 59.638 43.478 6.36 0.00 0.00 2.43
250 251 3.251972 TCACACGACATATGCTGCAAAAA 59.748 39.130 6.36 0.00 0.00 1.94
251 252 2.810852 TCACACGACATATGCTGCAAAA 59.189 40.909 6.36 0.00 0.00 2.44
252 253 2.421619 TCACACGACATATGCTGCAAA 58.578 42.857 6.36 0.00 0.00 3.68
253 254 2.091852 TCACACGACATATGCTGCAA 57.908 45.000 6.36 0.00 0.00 4.08
254 255 1.935199 CATCACACGACATATGCTGCA 59.065 47.619 4.13 4.13 0.00 4.41
255 256 1.935873 ACATCACACGACATATGCTGC 59.064 47.619 1.58 0.00 0.00 5.25
256 257 3.189285 TCACATCACACGACATATGCTG 58.811 45.455 1.58 0.00 0.00 4.41
257 258 3.525268 TCACATCACACGACATATGCT 57.475 42.857 1.58 0.00 0.00 3.79
258 259 5.163923 CCATATCACATCACACGACATATGC 60.164 44.000 1.58 0.00 0.00 3.14
259 260 5.163923 GCCATATCACATCACACGACATATG 60.164 44.000 0.00 0.00 0.00 1.78
260 261 4.931601 GCCATATCACATCACACGACATAT 59.068 41.667 0.00 0.00 0.00 1.78
261 262 4.306600 GCCATATCACATCACACGACATA 58.693 43.478 0.00 0.00 0.00 2.29
262 263 3.133691 GCCATATCACATCACACGACAT 58.866 45.455 0.00 0.00 0.00 3.06
263 264 2.549926 GCCATATCACATCACACGACA 58.450 47.619 0.00 0.00 0.00 4.35
264 265 1.867233 GGCCATATCACATCACACGAC 59.133 52.381 0.00 0.00 0.00 4.34
265 266 1.484240 TGGCCATATCACATCACACGA 59.516 47.619 0.00 0.00 0.00 4.35
266 267 1.952193 TGGCCATATCACATCACACG 58.048 50.000 0.00 0.00 0.00 4.49
267 268 4.440525 CCTTTTGGCCATATCACATCACAC 60.441 45.833 6.09 0.00 0.00 3.82
268 269 3.700539 CCTTTTGGCCATATCACATCACA 59.299 43.478 6.09 0.00 0.00 3.58
269 270 3.953612 TCCTTTTGGCCATATCACATCAC 59.046 43.478 6.09 0.00 40.12 3.06
270 271 4.248174 TCCTTTTGGCCATATCACATCA 57.752 40.909 6.09 0.00 40.12 3.07
271 272 4.586001 ACATCCTTTTGGCCATATCACATC 59.414 41.667 6.09 0.00 40.12 3.06
272 273 4.342951 CACATCCTTTTGGCCATATCACAT 59.657 41.667 6.09 0.00 40.12 3.21
273 274 3.700539 CACATCCTTTTGGCCATATCACA 59.299 43.478 6.09 0.00 40.12 3.58
274 275 3.953612 TCACATCCTTTTGGCCATATCAC 59.046 43.478 6.09 0.00 40.12 3.06
275 276 4.248174 TCACATCCTTTTGGCCATATCA 57.752 40.909 6.09 0.00 40.12 2.15
276 277 4.828939 TCATCACATCCTTTTGGCCATATC 59.171 41.667 6.09 0.00 40.12 1.63
277 278 4.806892 TCATCACATCCTTTTGGCCATAT 58.193 39.130 6.09 0.00 40.12 1.78
278 279 4.248174 TCATCACATCCTTTTGGCCATA 57.752 40.909 6.09 0.00 40.12 2.74
279 280 3.104519 TCATCACATCCTTTTGGCCAT 57.895 42.857 6.09 0.00 40.12 4.40
280 281 2.601240 TCATCACATCCTTTTGGCCA 57.399 45.000 0.00 0.00 40.12 5.36
281 282 3.448301 TCATTCATCACATCCTTTTGGCC 59.552 43.478 0.00 0.00 40.12 5.36
282 283 4.724074 TCATTCATCACATCCTTTTGGC 57.276 40.909 0.00 0.00 40.12 4.52
288 289 9.614792 CATCACATATATCATTCATCACATCCT 57.385 33.333 0.00 0.00 0.00 3.24
289 290 9.392259 ACATCACATATATCATTCATCACATCC 57.608 33.333 0.00 0.00 0.00 3.51
307 308 8.919777 AACATGATCAATCTCATACATCACAT 57.080 30.769 0.00 0.00 34.11 3.21
308 309 8.208903 AGAACATGATCAATCTCATACATCACA 58.791 33.333 0.00 0.00 34.11 3.58
309 310 8.604640 AGAACATGATCAATCTCATACATCAC 57.395 34.615 0.00 0.00 34.11 3.06
310 311 9.052759 CAAGAACATGATCAATCTCATACATCA 57.947 33.333 0.00 0.00 34.11 3.07
311 312 9.053840 ACAAGAACATGATCAATCTCATACATC 57.946 33.333 0.00 0.00 34.11 3.06
312 313 8.975663 ACAAGAACATGATCAATCTCATACAT 57.024 30.769 0.00 0.00 34.11 2.29
313 314 9.889128 TTACAAGAACATGATCAATCTCATACA 57.111 29.630 0.00 0.00 34.11 2.29
317 318 9.551734 CCTATTACAAGAACATGATCAATCTCA 57.448 33.333 0.00 0.00 0.00 3.27
318 319 9.770097 TCCTATTACAAGAACATGATCAATCTC 57.230 33.333 0.00 0.00 0.00 2.75
322 323 9.904198 TGATTCCTATTACAAGAACATGATCAA 57.096 29.630 0.00 0.00 0.00 2.57
323 324 9.330063 GTGATTCCTATTACAAGAACATGATCA 57.670 33.333 0.00 0.00 0.00 2.92
324 325 8.491152 CGTGATTCCTATTACAAGAACATGATC 58.509 37.037 0.00 0.00 0.00 2.92
325 326 8.204160 TCGTGATTCCTATTACAAGAACATGAT 58.796 33.333 0.00 0.00 0.00 2.45
326 327 7.491372 GTCGTGATTCCTATTACAAGAACATGA 59.509 37.037 0.00 0.00 0.00 3.07
327 328 7.492669 AGTCGTGATTCCTATTACAAGAACATG 59.507 37.037 0.00 0.00 0.00 3.21
328 329 7.556844 AGTCGTGATTCCTATTACAAGAACAT 58.443 34.615 0.00 0.00 0.00 2.71
329 330 6.931838 AGTCGTGATTCCTATTACAAGAACA 58.068 36.000 0.00 0.00 0.00 3.18
330 331 7.674240 GCAAGTCGTGATTCCTATTACAAGAAC 60.674 40.741 0.00 0.00 0.00 3.01
331 332 6.312918 GCAAGTCGTGATTCCTATTACAAGAA 59.687 38.462 0.00 0.00 0.00 2.52
332 333 5.810587 GCAAGTCGTGATTCCTATTACAAGA 59.189 40.000 0.00 0.00 0.00 3.02
333 334 5.580691 TGCAAGTCGTGATTCCTATTACAAG 59.419 40.000 0.00 0.00 0.00 3.16
334 335 5.483811 TGCAAGTCGTGATTCCTATTACAA 58.516 37.500 0.00 0.00 0.00 2.41
335 336 5.079689 TGCAAGTCGTGATTCCTATTACA 57.920 39.130 0.00 0.00 0.00 2.41
336 337 5.523916 ACATGCAAGTCGTGATTCCTATTAC 59.476 40.000 0.00 0.00 35.66 1.89
337 338 5.670485 ACATGCAAGTCGTGATTCCTATTA 58.330 37.500 0.00 0.00 35.66 0.98
338 339 4.517285 ACATGCAAGTCGTGATTCCTATT 58.483 39.130 0.00 0.00 35.66 1.73
339 340 4.122776 GACATGCAAGTCGTGATTCCTAT 58.877 43.478 6.29 0.00 35.66 2.57
340 341 3.521560 GACATGCAAGTCGTGATTCCTA 58.478 45.455 6.29 0.00 35.66 2.94
341 342 2.350522 GACATGCAAGTCGTGATTCCT 58.649 47.619 6.29 0.00 35.66 3.36
342 343 2.813779 GACATGCAAGTCGTGATTCC 57.186 50.000 6.29 0.00 35.66 3.01
350 351 4.208047 GTCATACTCATCGACATGCAAGTC 59.792 45.833 12.01 12.01 35.19 3.01
351 352 4.115516 GTCATACTCATCGACATGCAAGT 58.884 43.478 0.00 0.00 0.00 3.16
352 353 4.114794 TGTCATACTCATCGACATGCAAG 58.885 43.478 0.00 0.00 34.83 4.01
353 354 4.122143 TGTCATACTCATCGACATGCAA 57.878 40.909 0.00 0.00 34.83 4.08
354 355 3.799281 TGTCATACTCATCGACATGCA 57.201 42.857 0.00 0.00 34.83 3.96
355 356 3.246226 GGTTGTCATACTCATCGACATGC 59.754 47.826 0.00 0.00 39.29 4.06
356 357 3.487207 CGGTTGTCATACTCATCGACATG 59.513 47.826 0.00 0.00 39.29 3.21
357 358 3.490933 CCGGTTGTCATACTCATCGACAT 60.491 47.826 0.00 0.00 39.29 3.06
358 359 2.159296 CCGGTTGTCATACTCATCGACA 60.159 50.000 0.00 0.00 37.87 4.35
359 360 2.460918 CCGGTTGTCATACTCATCGAC 58.539 52.381 0.00 0.00 0.00 4.20
360 361 1.202371 GCCGGTTGTCATACTCATCGA 60.202 52.381 1.90 0.00 0.00 3.59
361 362 1.209128 GCCGGTTGTCATACTCATCG 58.791 55.000 1.90 0.00 0.00 3.84
362 363 2.205074 CTGCCGGTTGTCATACTCATC 58.795 52.381 1.90 0.00 0.00 2.92
363 364 1.134401 CCTGCCGGTTGTCATACTCAT 60.134 52.381 1.90 0.00 0.00 2.90
364 365 0.249120 CCTGCCGGTTGTCATACTCA 59.751 55.000 1.90 0.00 0.00 3.41
365 366 0.535335 TCCTGCCGGTTGTCATACTC 59.465 55.000 1.90 0.00 0.00 2.59
366 367 0.537188 CTCCTGCCGGTTGTCATACT 59.463 55.000 1.90 0.00 0.00 2.12
367 368 1.090052 GCTCCTGCCGGTTGTCATAC 61.090 60.000 1.90 0.00 0.00 2.39
368 369 1.220749 GCTCCTGCCGGTTGTCATA 59.779 57.895 1.90 0.00 0.00 2.15
369 370 2.045926 GCTCCTGCCGGTTGTCAT 60.046 61.111 1.90 0.00 0.00 3.06
379 380 1.342819 CCTAGTAGTGATGGCTCCTGC 59.657 57.143 0.00 0.00 38.76 4.85
380 381 1.967066 CCCTAGTAGTGATGGCTCCTG 59.033 57.143 0.00 0.00 0.00 3.86
381 382 1.860240 TCCCTAGTAGTGATGGCTCCT 59.140 52.381 0.00 0.00 0.00 3.69
382 383 2.383442 TCCCTAGTAGTGATGGCTCC 57.617 55.000 0.00 0.00 0.00 4.70
383 384 4.755266 TTTTCCCTAGTAGTGATGGCTC 57.245 45.455 0.00 0.00 0.00 4.70
384 385 4.971924 AGATTTTCCCTAGTAGTGATGGCT 59.028 41.667 0.00 0.00 0.00 4.75
385 386 5.297569 AGATTTTCCCTAGTAGTGATGGC 57.702 43.478 0.00 0.00 0.00 4.40
386 387 9.930693 GTATAAGATTTTCCCTAGTAGTGATGG 57.069 37.037 0.00 0.00 0.00 3.51
405 406 7.042187 GCTACTAGTAAGCGTCTGTGTATAAGA 60.042 40.741 3.76 0.00 0.00 2.10
560 567 1.338107 CTACTATGGCATGTCCGGGA 58.662 55.000 10.98 0.00 37.80 5.14
563 570 2.668556 CGCTACTACTATGGCATGTCCG 60.669 54.545 10.98 2.71 37.80 4.79
601 608 7.259161 GCTACAGCTATTCACAAAGTAGTAGT 58.741 38.462 0.00 0.00 38.21 2.73
801 815 1.010046 AGGGAGATGAGGGGTGAATCA 59.990 52.381 0.00 0.00 0.00 2.57
855 869 3.254035 ATCACCGGTGGGGAGGTCT 62.254 63.158 33.40 6.41 39.13 3.85
998 1012 2.029666 CGTCCTCCGATGCCATCC 59.970 66.667 0.00 0.00 39.56 3.51
1187 1202 6.071334 CGACCTATATATCATCACAGGGTTGT 60.071 42.308 2.74 0.00 38.31 3.32
1239 1254 1.669211 GCCACGCTCGTAGAAGAACTT 60.669 52.381 0.00 0.00 34.09 2.66
1262 1277 3.312421 CAGACAAGAAGTTTGCGAGGAAA 59.688 43.478 0.00 0.00 0.00 3.13
1286 1302 1.338579 GCAGAAGCAGAAGTAGCAGGT 60.339 52.381 0.00 0.00 41.58 4.00
1320 1336 0.325933 CCTCTCATCACAGGGCAACA 59.674 55.000 0.00 0.00 39.74 3.33
1419 1455 2.120718 AGAGGAAGGGTGGCGTCT 59.879 61.111 0.00 0.00 0.00 4.18
1426 1462 1.614824 CAGGGAGCAGAGGAAGGGT 60.615 63.158 0.00 0.00 0.00 4.34
1634 1670 6.868864 TCATCTTGTCTCTAAAGAAAGGTTCG 59.131 38.462 0.00 0.00 37.22 3.95
1688 1724 6.262273 TGTCAAATTTTCCTACTGTCTCCAAC 59.738 38.462 0.00 0.00 0.00 3.77
1808 1844 9.271828 TGCATATATTCATTTGTCTGAACGTAT 57.728 29.630 0.00 0.00 37.93 3.06
1903 1939 8.552296 ACTCCAAATCTACATTAGGAACTGATT 58.448 33.333 0.00 0.00 41.52 2.57
2106 2143 1.475682 GGAGTAGATGACCGAACCGTT 59.524 52.381 0.00 0.00 0.00 4.44
2157 2198 3.398967 ACAGCTGGGAGATAGAGAGAGAT 59.601 47.826 19.93 0.00 0.00 2.75
2278 2328 8.491331 AAAAACAACAGCATACAAATTTGACT 57.509 26.923 24.64 12.42 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.