Multiple sequence alignment - TraesCS1A01G228200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G228200 chr1A 100.000 4328 0 0 1 4328 399474938 399470611 0.000000e+00 7993.0
1 TraesCS1A01G228200 chr1A 88.496 226 20 1 988 1213 399232272 399232053 7.130000e-68 268.0
2 TraesCS1A01G228200 chr1A 86.831 243 23 5 988 1227 399245935 399245699 3.320000e-66 263.0
3 TraesCS1A01G228200 chr1D 91.647 1712 91 19 2033 3720 318162749 318161066 0.000000e+00 2322.0
4 TraesCS1A01G228200 chr1D 85.758 983 116 20 2293 3263 317997135 317996165 0.000000e+00 1018.0
5 TraesCS1A01G228200 chr1D 80.300 1000 105 37 365 1291 318164575 318163595 0.000000e+00 671.0
6 TraesCS1A01G228200 chr1D 86.623 613 63 9 3718 4328 318156619 318156024 0.000000e+00 660.0
7 TraesCS1A01G228200 chr1D 86.240 516 31 19 1359 1836 318163462 318162949 1.380000e-144 523.0
8 TraesCS1A01G228200 chr1D 85.955 178 24 1 3094 3271 318124636 318124460 5.710000e-44 189.0
9 TraesCS1A01G228200 chr1D 82.857 210 23 7 140 341 318164771 318164567 4.450000e-40 176.0
10 TraesCS1A01G228200 chr1D 91.379 58 5 0 1303 1360 318163558 318163501 3.590000e-11 80.5
11 TraesCS1A01G228200 chr1B 87.943 1609 141 31 2741 4328 429977021 429975445 0.000000e+00 1847.0
12 TraesCS1A01G228200 chr1B 90.757 779 63 4 2283 3053 16228492 16229269 0.000000e+00 1031.0
13 TraesCS1A01G228200 chr1B 89.197 722 50 9 2033 2736 429977781 429977070 0.000000e+00 876.0
14 TraesCS1A01G228200 chr1B 80.160 1003 88 38 432 1360 429979483 429978518 0.000000e+00 647.0
15 TraesCS1A01G228200 chr1B 86.417 508 28 17 1358 1836 429978475 429977980 6.420000e-143 518.0
16 TraesCS1A01G228200 chr1B 90.708 226 15 1 988 1213 429768077 429767858 3.270000e-76 296.0
17 TraesCS1A01G228200 chr2D 92.229 785 47 5 2283 3053 79515801 79515017 0.000000e+00 1099.0
18 TraesCS1A01G228200 chr2D 85.545 505 42 18 1358 1849 79516666 79516180 2.320000e-137 499.0
19 TraesCS1A01G228200 chr2D 88.291 316 20 10 990 1292 79517108 79516797 3.180000e-96 363.0
20 TraesCS1A01G228200 chr2D 94.828 58 3 0 1303 1360 79516763 79516706 1.660000e-14 91.6
21 TraesCS1A01G228200 chr7A 91.656 779 56 5 2283 3053 254260919 254260142 0.000000e+00 1070.0
22 TraesCS1A01G228200 chr7A 85.347 505 49 18 1358 1849 254261602 254261110 2.320000e-137 499.0
23 TraesCS1A01G228200 chr7A 86.010 193 18 7 1109 1292 254261925 254261733 9.490000e-47 198.0
24 TraesCS1A01G228200 chr6D 91.571 783 54 5 2283 3053 443352840 443353622 0.000000e+00 1070.0
25 TraesCS1A01G228200 chr6D 91.484 775 53 6 2291 3053 443453957 443454730 0.000000e+00 1053.0
26 TraesCS1A01G228200 chr6D 85.968 506 45 17 1358 1849 443453277 443453770 6.420000e-143 518.0
27 TraesCS1A01G228200 chr6D 85.771 506 46 17 1358 1849 443352168 443352661 2.990000e-141 512.0
28 TraesCS1A01G228200 chr6D 86.478 318 34 6 984 1292 443452830 443453147 1.490000e-89 340.0
29 TraesCS1A01G228200 chr6D 85.535 318 37 6 984 1292 443351721 443352038 1.500000e-84 324.0
30 TraesCS1A01G228200 chr6D 91.803 61 5 0 1300 1360 443352068 443352128 7.710000e-13 86.1
31 TraesCS1A01G228200 chr6A 90.793 782 61 2 2283 3053 612595249 612596030 0.000000e+00 1035.0
32 TraesCS1A01G228200 chr6B 90.372 779 66 4 2283 3053 59413474 59414251 0.000000e+00 1014.0
33 TraesCS1A01G228200 chrUn 85.470 351 31 15 1507 1849 479154855 479154517 8.910000e-92 348.0
34 TraesCS1A01G228200 chr7B 86.164 318 35 5 984 1292 623109302 623109619 6.940000e-88 335.0
35 TraesCS1A01G228200 chr7B 82.369 363 37 10 1358 1706 623109750 623110099 1.520000e-74 291.0
36 TraesCS1A01G228200 chr7B 94.828 58 3 0 1303 1360 623109653 623109710 1.660000e-14 91.6
37 TraesCS1A01G228200 chr7B 93.878 49 2 1 1701 1749 623111284 623111331 6.000000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G228200 chr1A 399470611 399474938 4327 True 7993.000 7993 100.000000 1 4328 1 chr1A.!!$R3 4327
1 TraesCS1A01G228200 chr1D 317996165 317997135 970 True 1018.000 1018 85.758000 2293 3263 1 chr1D.!!$R1 970
2 TraesCS1A01G228200 chr1D 318161066 318164771 3705 True 754.500 2322 86.484600 140 3720 5 chr1D.!!$R4 3580
3 TraesCS1A01G228200 chr1D 318156024 318156619 595 True 660.000 660 86.623000 3718 4328 1 chr1D.!!$R3 610
4 TraesCS1A01G228200 chr1B 16228492 16229269 777 False 1031.000 1031 90.757000 2283 3053 1 chr1B.!!$F1 770
5 TraesCS1A01G228200 chr1B 429975445 429979483 4038 True 972.000 1847 85.929250 432 4328 4 chr1B.!!$R2 3896
6 TraesCS1A01G228200 chr2D 79515017 79517108 2091 True 513.150 1099 90.223250 990 3053 4 chr2D.!!$R1 2063
7 TraesCS1A01G228200 chr7A 254260142 254261925 1783 True 589.000 1070 87.671000 1109 3053 3 chr7A.!!$R1 1944
8 TraesCS1A01G228200 chr6D 443452830 443454730 1900 False 637.000 1053 87.976667 984 3053 3 chr6D.!!$F2 2069
9 TraesCS1A01G228200 chr6D 443351721 443353622 1901 False 498.025 1070 88.670000 984 3053 4 chr6D.!!$F1 2069
10 TraesCS1A01G228200 chr6A 612595249 612596030 781 False 1035.000 1035 90.793000 2283 3053 1 chr6A.!!$F1 770
11 TraesCS1A01G228200 chr6B 59413474 59414251 777 False 1014.000 1014 90.372000 2283 3053 1 chr6B.!!$F1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 572 0.029700 CTGCATGGTGTGTGTGTGTG 59.970 55.0 0.00 0.0 0.0 3.82 F
2005 2525 0.034337 TCAGTAAGGACAACGGTGGC 59.966 55.0 4.97 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2706 0.107897 TATTGAGCGACGGGTGCAAT 60.108 50.0 0.00 0.00 34.05 3.56 R
3597 4206 0.039527 AGGGCATTTTTGACGCGAAC 60.040 50.0 15.93 7.16 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.939586 TCTACTACGAATATTTTACGATTCCG 57.060 34.615 2.41 0.00 42.50 4.30
30 31 6.443876 ACTACGAATATTTTACGATTCCGC 57.556 37.500 2.41 0.00 39.95 5.54
31 32 4.364817 ACGAATATTTTACGATTCCGCG 57.635 40.909 0.00 0.00 39.95 6.46
32 33 3.182972 ACGAATATTTTACGATTCCGCGG 59.817 43.478 22.12 22.12 39.95 6.46
33 34 3.476181 GAATATTTTACGATTCCGCGGC 58.524 45.455 23.51 5.56 39.95 6.53
34 35 0.854062 TATTTTACGATTCCGCGGCG 59.146 50.000 23.51 21.38 39.95 6.46
35 36 1.085501 ATTTTACGATTCCGCGGCGT 61.086 50.000 27.65 27.65 41.58 5.68
36 37 1.290491 TTTTACGATTCCGCGGCGTT 61.290 50.000 29.21 13.67 39.24 4.84
37 38 0.457509 TTTACGATTCCGCGGCGTTA 60.458 50.000 29.21 20.12 39.24 3.18
38 39 0.457509 TTACGATTCCGCGGCGTTAA 60.458 50.000 29.21 16.23 39.24 2.01
39 40 0.457509 TACGATTCCGCGGCGTTAAA 60.458 50.000 29.21 15.86 39.24 1.52
40 41 1.012671 CGATTCCGCGGCGTTAAAG 60.013 57.895 23.51 5.39 0.00 1.85
41 42 1.415288 CGATTCCGCGGCGTTAAAGA 61.415 55.000 23.51 7.93 0.00 2.52
42 43 0.300789 GATTCCGCGGCGTTAAAGAG 59.699 55.000 23.51 3.83 0.00 2.85
43 44 0.108520 ATTCCGCGGCGTTAAAGAGA 60.109 50.000 23.51 6.39 0.00 3.10
44 45 0.108520 TTCCGCGGCGTTAAAGAGAT 60.109 50.000 23.51 0.00 0.00 2.75
45 46 0.740149 TCCGCGGCGTTAAAGAGATA 59.260 50.000 23.51 0.00 0.00 1.98
46 47 1.338973 TCCGCGGCGTTAAAGAGATAT 59.661 47.619 23.51 0.00 0.00 1.63
47 48 1.719780 CCGCGGCGTTAAAGAGATATC 59.280 52.381 22.00 0.00 0.00 1.63
48 49 2.390938 CGCGGCGTTAAAGAGATATCA 58.609 47.619 15.36 0.00 0.00 2.15
49 50 2.792674 CGCGGCGTTAAAGAGATATCAA 59.207 45.455 15.36 0.00 0.00 2.57
50 51 3.121328 CGCGGCGTTAAAGAGATATCAAG 60.121 47.826 15.36 0.00 0.00 3.02
51 52 3.363084 GCGGCGTTAAAGAGATATCAAGC 60.363 47.826 9.37 0.00 0.00 4.01
52 53 3.802139 CGGCGTTAAAGAGATATCAAGCA 59.198 43.478 5.32 0.00 0.00 3.91
53 54 4.084849 CGGCGTTAAAGAGATATCAAGCAG 60.085 45.833 5.32 0.00 0.00 4.24
54 55 4.212214 GGCGTTAAAGAGATATCAAGCAGG 59.788 45.833 5.32 0.00 0.00 4.85
55 56 4.319118 GCGTTAAAGAGATATCAAGCAGGC 60.319 45.833 5.32 0.00 0.00 4.85
56 57 4.811024 CGTTAAAGAGATATCAAGCAGGCA 59.189 41.667 5.32 0.00 0.00 4.75
57 58 5.468072 CGTTAAAGAGATATCAAGCAGGCAT 59.532 40.000 5.32 0.00 0.00 4.40
58 59 6.646653 CGTTAAAGAGATATCAAGCAGGCATA 59.353 38.462 5.32 0.00 0.00 3.14
59 60 7.332926 CGTTAAAGAGATATCAAGCAGGCATAT 59.667 37.037 5.32 0.00 0.00 1.78
60 61 9.658799 GTTAAAGAGATATCAAGCAGGCATATA 57.341 33.333 5.32 0.00 0.00 0.86
63 64 9.750783 AAAGAGATATCAAGCAGGCATATAAAT 57.249 29.630 5.32 0.00 0.00 1.40
64 65 9.750783 AAGAGATATCAAGCAGGCATATAAATT 57.249 29.630 5.32 0.00 0.00 1.82
65 66 9.175312 AGAGATATCAAGCAGGCATATAAATTG 57.825 33.333 5.32 0.00 0.00 2.32
66 67 8.289939 AGATATCAAGCAGGCATATAAATTGG 57.710 34.615 5.32 0.00 0.00 3.16
67 68 7.892241 AGATATCAAGCAGGCATATAAATTGGT 59.108 33.333 5.32 0.00 0.00 3.67
68 69 9.177608 GATATCAAGCAGGCATATAAATTGGTA 57.822 33.333 0.00 0.00 0.00 3.25
69 70 7.838079 ATCAAGCAGGCATATAAATTGGTAA 57.162 32.000 0.00 0.00 0.00 2.85
70 71 7.275888 TCAAGCAGGCATATAAATTGGTAAG 57.724 36.000 0.00 0.00 0.00 2.34
71 72 5.712152 AGCAGGCATATAAATTGGTAAGC 57.288 39.130 0.00 0.00 0.00 3.09
72 73 5.139727 AGCAGGCATATAAATTGGTAAGCA 58.860 37.500 0.00 0.00 0.00 3.91
73 74 5.598005 AGCAGGCATATAAATTGGTAAGCAA 59.402 36.000 0.00 0.00 0.00 3.91
74 75 6.268387 AGCAGGCATATAAATTGGTAAGCAAT 59.732 34.615 0.00 0.00 0.00 3.56
75 76 6.587608 GCAGGCATATAAATTGGTAAGCAATC 59.412 38.462 0.00 0.00 0.00 2.67
76 77 7.092716 CAGGCATATAAATTGGTAAGCAATCC 58.907 38.462 0.00 0.00 0.00 3.01
77 78 6.071952 AGGCATATAAATTGGTAAGCAATCCG 60.072 38.462 0.00 0.00 0.00 4.18
78 79 6.072175 GGCATATAAATTGGTAAGCAATCCGA 60.072 38.462 0.00 0.00 0.00 4.55
79 80 7.367285 GCATATAAATTGGTAAGCAATCCGAA 58.633 34.615 0.00 0.00 0.00 4.30
80 81 7.326063 GCATATAAATTGGTAAGCAATCCGAAC 59.674 37.037 0.00 0.00 0.00 3.95
81 82 6.767524 ATAAATTGGTAAGCAATCCGAACA 57.232 33.333 0.00 0.00 0.00 3.18
82 83 5.461032 AAATTGGTAAGCAATCCGAACAA 57.539 34.783 0.00 0.00 0.00 2.83
83 84 5.659440 AATTGGTAAGCAATCCGAACAAT 57.341 34.783 0.00 0.00 0.00 2.71
84 85 5.659440 ATTGGTAAGCAATCCGAACAATT 57.341 34.783 0.00 0.00 0.00 2.32
85 86 4.695217 TGGTAAGCAATCCGAACAATTC 57.305 40.909 0.00 0.00 0.00 2.17
86 87 4.075682 TGGTAAGCAATCCGAACAATTCA 58.924 39.130 0.00 0.00 0.00 2.57
87 88 4.155826 TGGTAAGCAATCCGAACAATTCAG 59.844 41.667 0.00 0.00 0.00 3.02
88 89 4.394920 GGTAAGCAATCCGAACAATTCAGA 59.605 41.667 0.00 0.00 0.00 3.27
89 90 5.106317 GGTAAGCAATCCGAACAATTCAGAA 60.106 40.000 0.00 0.00 0.00 3.02
90 91 5.452078 AAGCAATCCGAACAATTCAGAAA 57.548 34.783 0.00 0.00 0.00 2.52
91 92 5.452078 AGCAATCCGAACAATTCAGAAAA 57.548 34.783 0.00 0.00 0.00 2.29
92 93 5.841810 AGCAATCCGAACAATTCAGAAAAA 58.158 33.333 0.00 0.00 0.00 1.94
135 136 7.678947 AATCCATATGCAAATGAGTACTAGC 57.321 36.000 0.00 0.00 0.00 3.42
136 137 6.425210 TCCATATGCAAATGAGTACTAGCT 57.575 37.500 0.00 0.00 0.00 3.32
137 138 7.539034 TCCATATGCAAATGAGTACTAGCTA 57.461 36.000 0.00 0.00 0.00 3.32
138 139 7.606349 TCCATATGCAAATGAGTACTAGCTAG 58.394 38.462 19.44 19.44 0.00 3.42
172 173 7.639113 TTAAGATTTCCCGCAACATATTCTT 57.361 32.000 0.00 0.00 0.00 2.52
181 182 9.743057 TTCCCGCAACATATTCTTTATTTATTG 57.257 29.630 0.00 0.00 0.00 1.90
194 195 2.902705 TTTATTGCGTAGATCGGCCT 57.097 45.000 0.00 0.00 40.26 5.19
202 203 3.570975 TGCGTAGATCGGCCTAAAGATAA 59.429 43.478 0.00 0.00 40.26 1.75
203 204 4.219944 TGCGTAGATCGGCCTAAAGATAAT 59.780 41.667 0.00 0.00 40.26 1.28
204 205 4.563184 GCGTAGATCGGCCTAAAGATAATG 59.437 45.833 0.00 0.00 40.26 1.90
205 206 5.710984 CGTAGATCGGCCTAAAGATAATGT 58.289 41.667 0.00 0.00 35.71 2.71
206 207 6.624423 GCGTAGATCGGCCTAAAGATAATGTA 60.624 42.308 0.00 0.00 40.26 2.29
207 208 6.746364 CGTAGATCGGCCTAAAGATAATGTAC 59.254 42.308 0.00 0.00 35.71 2.90
208 209 6.919775 AGATCGGCCTAAAGATAATGTACT 57.080 37.500 0.00 0.00 0.00 2.73
209 210 6.926313 AGATCGGCCTAAAGATAATGTACTC 58.074 40.000 0.00 0.00 0.00 2.59
222 223 2.710220 TGTACTCGCAAAGACGCTTA 57.290 45.000 0.00 0.00 0.00 3.09
251 252 1.692411 AAAGGTTCAGCAAGACCCAC 58.308 50.000 0.00 0.00 29.56 4.61
260 261 1.202770 AGCAAGACCCACAACTACACC 60.203 52.381 0.00 0.00 0.00 4.16
262 263 0.769247 AAGACCCACAACTACACCCC 59.231 55.000 0.00 0.00 0.00 4.95
270 271 1.491754 ACAACTACACCCCTCCGTTTT 59.508 47.619 0.00 0.00 0.00 2.43
271 272 2.148768 CAACTACACCCCTCCGTTTTC 58.851 52.381 0.00 0.00 0.00 2.29
273 274 1.982958 ACTACACCCCTCCGTTTTCAT 59.017 47.619 0.00 0.00 0.00 2.57
285 286 0.729140 GTTTTCATTGGGCTCGCACG 60.729 55.000 0.00 0.00 0.00 5.34
286 287 1.169661 TTTTCATTGGGCTCGCACGT 61.170 50.000 0.00 0.00 0.00 4.49
287 288 1.573829 TTTCATTGGGCTCGCACGTC 61.574 55.000 0.00 0.00 0.00 4.34
288 289 3.853330 CATTGGGCTCGCACGTCG 61.853 66.667 0.00 0.00 40.15 5.12
316 325 3.690280 TCGACATCGGCCTGTGCA 61.690 61.111 1.69 0.00 40.13 4.57
330 339 2.046023 TGCACATTCCAGAGCGGG 60.046 61.111 0.00 0.00 34.36 6.13
331 340 2.825836 GCACATTCCAGAGCGGGG 60.826 66.667 0.00 0.00 34.36 5.73
332 341 2.825836 CACATTCCAGAGCGGGGC 60.826 66.667 0.00 0.00 34.36 5.80
333 342 4.473520 ACATTCCAGAGCGGGGCG 62.474 66.667 0.00 0.00 34.36 6.13
367 376 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
368 377 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
369 378 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
370 379 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
371 380 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
372 381 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
373 382 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
374 383 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
375 384 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
376 385 1.128507 CACACACACACACACACAGAC 59.871 52.381 0.00 0.00 0.00 3.51
377 386 1.270571 ACACACACACACACACAGACA 60.271 47.619 0.00 0.00 0.00 3.41
391 400 3.201290 CACAGACAGCTTATCCACATCC 58.799 50.000 0.00 0.00 0.00 3.51
453 476 0.368227 CTGAAAGACACGCATCGCTC 59.632 55.000 0.00 0.00 34.07 5.03
528 569 1.241165 CATCTGCATGGTGTGTGTGT 58.759 50.000 0.00 0.00 0.00 3.72
529 570 1.068816 CATCTGCATGGTGTGTGTGTG 60.069 52.381 0.00 0.00 0.00 3.82
530 571 0.107263 TCTGCATGGTGTGTGTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
531 572 0.029700 CTGCATGGTGTGTGTGTGTG 59.970 55.000 0.00 0.00 0.00 3.82
532 573 1.299316 GCATGGTGTGTGTGTGTGC 60.299 57.895 0.00 0.00 0.00 4.57
533 574 1.009788 CATGGTGTGTGTGTGTGCG 60.010 57.895 0.00 0.00 0.00 5.34
534 575 2.833533 ATGGTGTGTGTGTGTGCGC 61.834 57.895 0.00 0.00 0.00 6.09
535 576 4.589700 GGTGTGTGTGTGTGCGCG 62.590 66.667 0.00 0.00 0.00 6.86
575 616 4.787280 CCACGGCTCTCCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
576 617 3.151022 CACGGCTCTCCCTCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
577 618 3.351885 ACGGCTCTCCCTCCCTCT 61.352 66.667 0.00 0.00 0.00 3.69
578 619 2.520741 CGGCTCTCCCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
579 620 2.123033 GGCTCTCCCTCCCTCTCC 60.123 72.222 0.00 0.00 0.00 3.71
580 621 2.123033 GCTCTCCCTCCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
581 622 2.197324 CTCTCCCTCCCTCTCCCG 59.803 72.222 0.00 0.00 0.00 5.14
644 685 1.586154 CCTCCACCACAATTCGCACC 61.586 60.000 0.00 0.00 0.00 5.01
645 686 0.606401 CTCCACCACAATTCGCACCT 60.606 55.000 0.00 0.00 0.00 4.00
648 689 1.303317 ACCACAATTCGCACCTCCC 60.303 57.895 0.00 0.00 0.00 4.30
649 690 1.002134 CCACAATTCGCACCTCCCT 60.002 57.895 0.00 0.00 0.00 4.20
650 691 0.609131 CCACAATTCGCACCTCCCTT 60.609 55.000 0.00 0.00 0.00 3.95
651 692 0.523072 CACAATTCGCACCTCCCTTG 59.477 55.000 0.00 0.00 0.00 3.61
668 727 4.404654 GCGCCCTTGCCTTGTTCG 62.405 66.667 0.00 0.00 0.00 3.95
669 728 4.404654 CGCCCTTGCCTTGTTCGC 62.405 66.667 0.00 0.00 0.00 4.70
747 806 7.168905 CCTTCTTCCTTGGTGAAGTATAAGTT 58.831 38.462 16.73 0.00 41.96 2.66
750 809 7.918076 TCTTCCTTGGTGAAGTATAAGTTGAT 58.082 34.615 0.00 0.00 41.96 2.57
804 863 2.675348 CTCGTCTCTTCAATCCAAAGCC 59.325 50.000 0.00 0.00 0.00 4.35
806 865 2.160417 CGTCTCTTCAATCCAAAGCCAC 59.840 50.000 0.00 0.00 0.00 5.01
807 866 2.160417 GTCTCTTCAATCCAAAGCCACG 59.840 50.000 0.00 0.00 0.00 4.94
809 868 0.109132 CTTCAATCCAAAGCCACGCC 60.109 55.000 0.00 0.00 0.00 5.68
810 869 1.531739 TTCAATCCAAAGCCACGCCC 61.532 55.000 0.00 0.00 0.00 6.13
811 870 1.978617 CAATCCAAAGCCACGCCCT 60.979 57.895 0.00 0.00 0.00 5.19
812 871 1.678970 AATCCAAAGCCACGCCCTC 60.679 57.895 0.00 0.00 0.00 4.30
813 872 2.424842 AATCCAAAGCCACGCCCTCA 62.425 55.000 0.00 0.00 0.00 3.86
814 873 2.424842 ATCCAAAGCCACGCCCTCAA 62.425 55.000 0.00 0.00 0.00 3.02
815 874 2.199652 CCAAAGCCACGCCCTCAAA 61.200 57.895 0.00 0.00 0.00 2.69
816 875 1.007387 CAAAGCCACGCCCTCAAAC 60.007 57.895 0.00 0.00 0.00 2.93
817 876 1.454847 AAAGCCACGCCCTCAAACA 60.455 52.632 0.00 0.00 0.00 2.83
837 896 4.657013 ACAAGAAAGATCCAGGAGAAACC 58.343 43.478 0.00 0.00 39.35 3.27
838 897 4.104738 ACAAGAAAGATCCAGGAGAAACCA 59.895 41.667 0.00 0.00 42.04 3.67
839 898 5.222213 ACAAGAAAGATCCAGGAGAAACCAT 60.222 40.000 0.00 0.00 42.04 3.55
856 919 0.961753 CATCGATCGGGACATCTCCA 59.038 55.000 16.41 0.00 38.52 3.86
857 920 1.067985 CATCGATCGGGACATCTCCAG 60.068 57.143 16.41 0.00 38.52 3.86
858 921 1.006805 CGATCGGGACATCTCCAGC 60.007 63.158 7.38 0.00 38.52 4.85
859 922 1.369321 GATCGGGACATCTCCAGCC 59.631 63.158 0.00 0.00 38.52 4.85
860 923 1.074926 ATCGGGACATCTCCAGCCT 60.075 57.895 0.00 0.00 38.52 4.58
861 924 0.188587 ATCGGGACATCTCCAGCCTA 59.811 55.000 0.00 0.00 38.52 3.93
862 925 0.468214 TCGGGACATCTCCAGCCTAG 60.468 60.000 0.00 0.00 38.52 3.02
863 926 1.751563 GGGACATCTCCAGCCTAGC 59.248 63.158 0.00 0.00 38.52 3.42
864 927 1.751563 GGACATCTCCAGCCTAGCC 59.248 63.158 0.00 0.00 36.42 3.93
865 928 1.050988 GGACATCTCCAGCCTAGCCA 61.051 60.000 0.00 0.00 36.42 4.75
866 929 1.055040 GACATCTCCAGCCTAGCCAT 58.945 55.000 0.00 0.00 0.00 4.40
868 931 1.974236 ACATCTCCAGCCTAGCCATAC 59.026 52.381 0.00 0.00 0.00 2.39
869 932 1.973515 CATCTCCAGCCTAGCCATACA 59.026 52.381 0.00 0.00 0.00 2.29
871 934 1.123077 CTCCAGCCTAGCCATACACA 58.877 55.000 0.00 0.00 0.00 3.72
882 952 2.188829 CATACACATGGCCGGCCTG 61.189 63.158 43.34 36.38 36.94 4.85
898 968 0.250640 CCTGTGCTCTGTTCTTGCCT 60.251 55.000 0.00 0.00 0.00 4.75
900 970 0.469494 TGTGCTCTGTTCTTGCCTGA 59.531 50.000 0.00 0.00 0.00 3.86
902 972 2.169842 GCTCTGTTCTTGCCTGAGC 58.830 57.895 0.00 0.00 43.49 4.26
913 983 4.729918 CCTGAGCACCACCCCTGC 62.730 72.222 0.00 0.00 34.63 4.85
914 984 4.729918 CTGAGCACCACCCCTGCC 62.730 72.222 0.00 0.00 35.01 4.85
937 1009 3.851976 TCACCGAGAAACTAAGAGAGC 57.148 47.619 0.00 0.00 0.00 4.09
942 1014 3.516615 CGAGAAACTAAGAGAGCAAGGG 58.483 50.000 0.00 0.00 0.00 3.95
943 1015 3.193691 CGAGAAACTAAGAGAGCAAGGGA 59.806 47.826 0.00 0.00 0.00 4.20
946 1018 4.841246 AGAAACTAAGAGAGCAAGGGAGAA 59.159 41.667 0.00 0.00 0.00 2.87
949 1021 4.421131 ACTAAGAGAGCAAGGGAGAAGAA 58.579 43.478 0.00 0.00 0.00 2.52
957 1029 3.906846 AGCAAGGGAGAAGAAGAAGAAGA 59.093 43.478 0.00 0.00 0.00 2.87
958 1030 4.349342 AGCAAGGGAGAAGAAGAAGAAGAA 59.651 41.667 0.00 0.00 0.00 2.52
959 1031 4.694982 GCAAGGGAGAAGAAGAAGAAGAAG 59.305 45.833 0.00 0.00 0.00 2.85
960 1032 5.512232 GCAAGGGAGAAGAAGAAGAAGAAGA 60.512 44.000 0.00 0.00 0.00 2.87
961 1033 6.529220 CAAGGGAGAAGAAGAAGAAGAAGAA 58.471 40.000 0.00 0.00 0.00 2.52
962 1034 6.358974 AGGGAGAAGAAGAAGAAGAAGAAG 57.641 41.667 0.00 0.00 0.00 2.85
963 1035 6.081356 AGGGAGAAGAAGAAGAAGAAGAAGA 58.919 40.000 0.00 0.00 0.00 2.87
965 1037 6.873605 GGGAGAAGAAGAAGAAGAAGAAGAAG 59.126 42.308 0.00 0.00 0.00 2.85
967 1039 8.147704 GGAGAAGAAGAAGAAGAAGAAGAAGAA 58.852 37.037 0.00 0.00 0.00 2.52
968 1040 9.196552 GAGAAGAAGAAGAAGAAGAAGAAGAAG 57.803 37.037 0.00 0.00 0.00 2.85
969 1041 7.657354 AGAAGAAGAAGAAGAAGAAGAAGAAGC 59.343 37.037 0.00 0.00 0.00 3.86
972 1044 6.670695 AGAAGAAGAAGAAGAAGAAGCTCT 57.329 37.500 0.00 0.00 0.00 4.09
973 1045 6.691508 AGAAGAAGAAGAAGAAGAAGCTCTC 58.308 40.000 0.00 0.00 0.00 3.20
976 1048 3.161866 AGAAGAAGAAGAAGCTCTCCGT 58.838 45.455 0.00 0.00 0.00 4.69
979 1051 3.422796 AGAAGAAGAAGCTCTCCGTACA 58.577 45.455 0.00 0.00 0.00 2.90
980 1052 3.827302 AGAAGAAGAAGCTCTCCGTACAA 59.173 43.478 0.00 0.00 0.00 2.41
981 1053 4.464597 AGAAGAAGAAGCTCTCCGTACAAT 59.535 41.667 0.00 0.00 0.00 2.71
982 1054 4.379339 AGAAGAAGCTCTCCGTACAATC 57.621 45.455 0.00 0.00 0.00 2.67
985 1067 2.356382 AGAAGCTCTCCGTACAATCGAG 59.644 50.000 0.00 0.00 0.00 4.04
988 1070 1.862008 GCTCTCCGTACAATCGAGCTG 60.862 57.143 13.16 0.00 42.72 4.24
1066 1148 0.618968 TCTGGGGAAGGAGAGGAAGC 60.619 60.000 0.00 0.00 0.00 3.86
1078 1160 4.168291 GGAAGCAGGCGGAGGAGG 62.168 72.222 0.00 0.00 0.00 4.30
1208 1290 1.134965 CATCGTCTGGGAGGTGAGTTC 60.135 57.143 0.00 0.00 0.00 3.01
1209 1291 0.898789 TCGTCTGGGAGGTGAGTTCC 60.899 60.000 0.00 0.00 0.00 3.62
1210 1292 1.185618 CGTCTGGGAGGTGAGTTCCA 61.186 60.000 0.00 0.00 36.40 3.53
1211 1293 1.280457 GTCTGGGAGGTGAGTTCCAT 58.720 55.000 0.00 0.00 36.40 3.41
1212 1294 1.208293 GTCTGGGAGGTGAGTTCCATC 59.792 57.143 0.00 0.00 36.40 3.51
1219 1301 2.167861 GTGAGTTCCATCGCCGCTC 61.168 63.158 0.00 0.00 0.00 5.03
1238 1333 1.077858 CTCTGCTTCCTCCCTTGCC 60.078 63.158 0.00 0.00 0.00 4.52
1242 1337 1.075659 GCTTCCTCCCTTGCCTGTT 59.924 57.895 0.00 0.00 0.00 3.16
1243 1338 0.540597 GCTTCCTCCCTTGCCTGTTT 60.541 55.000 0.00 0.00 0.00 2.83
1253 1348 6.036577 TCCCTTGCCTGTTTATGAATTTTC 57.963 37.500 0.00 0.00 0.00 2.29
1268 1370 3.740044 ATTTTCACGCTGGTTATCACG 57.260 42.857 0.00 0.00 0.00 4.35
1271 1373 0.455464 TCACGCTGGTTATCACGACG 60.455 55.000 0.00 0.00 0.00 5.12
1295 1399 1.079405 CCGGTGGCGTGTAGTCAAT 60.079 57.895 0.00 0.00 35.50 2.57
1332 1459 2.887337 CCACACAATTTAATTCCCGCC 58.113 47.619 0.00 0.00 0.00 6.13
1345 1472 2.122783 TCCCGCCTTCCAAACATAAG 57.877 50.000 0.00 0.00 0.00 1.73
1400 1576 2.573609 AATGGCGAGGGTACAGCGTC 62.574 60.000 0.00 0.00 0.00 5.19
1405 1581 2.754658 AGGGTACAGCGTCGGGAG 60.755 66.667 0.00 0.00 0.00 4.30
1481 1657 3.888323 TCAGTTTTCATGTGCTTGCCTTA 59.112 39.130 0.00 0.00 0.00 2.69
1489 1667 0.794473 GTGCTTGCCTTACGTGTACC 59.206 55.000 0.00 0.00 0.00 3.34
1502 1680 8.833493 GCCTTACGTGTACCAAATAAAATAGAT 58.167 33.333 0.00 0.00 0.00 1.98
1542 1721 4.208746 TCCGTTGTTCACCTAACCATTTT 58.791 39.130 0.00 0.00 37.27 1.82
1576 1759 2.094906 CGTGAGATGGTTCAGTTCGGTA 60.095 50.000 0.00 0.00 0.00 4.02
1577 1760 3.251571 GTGAGATGGTTCAGTTCGGTAC 58.748 50.000 0.00 0.00 0.00 3.34
1606 1809 2.104281 ACTATCGTTAGGCCATTCACCC 59.896 50.000 5.01 0.00 0.00 4.61
1609 1812 1.087771 CGTTAGGCCATTCACCCGAC 61.088 60.000 5.01 0.00 0.00 4.79
1620 1823 1.006571 CACCCGACTACGTGTTGCT 60.007 57.895 0.00 0.00 37.88 3.91
1643 1846 4.729868 TCTTGAGACGATCCTGGATCATA 58.270 43.478 30.46 12.61 38.84 2.15
1646 1849 6.268617 TCTTGAGACGATCCTGGATCATATTT 59.731 38.462 30.46 14.30 38.84 1.40
1655 1858 7.521099 CGATCCTGGATCATATTTTTCACAAGG 60.521 40.741 30.46 9.41 38.84 3.61
1743 1947 0.902531 AGGGATGGTACGTGTCTTGG 59.097 55.000 0.00 0.00 0.00 3.61
1756 1960 2.622942 GTGTCTTGGATTTGTTGGAGCA 59.377 45.455 0.00 0.00 0.00 4.26
1800 2018 5.415701 TGGTATCTGAATCCAAAGTTGCTTC 59.584 40.000 2.46 0.00 0.00 3.86
1815 2035 3.188159 TGCTTCGGACAGTTAAACACT 57.812 42.857 0.00 0.00 35.35 3.55
1849 2071 2.875933 TGTGATGGGAGAAAACGTGAAC 59.124 45.455 0.00 0.00 0.00 3.18
1854 2089 2.875933 TGGGAGAAAACGTGAACATGTC 59.124 45.455 0.00 0.00 0.00 3.06
1861 2096 5.299279 AGAAAACGTGAACATGTCATTTCCT 59.701 36.000 0.00 0.00 38.90 3.36
1870 2295 6.313658 TGAACATGTCATTTCCTACATCTTCG 59.686 38.462 0.00 0.00 35.20 3.79
1871 2296 4.572389 ACATGTCATTTCCTACATCTTCGC 59.428 41.667 0.00 0.00 34.12 4.70
1874 2299 3.557595 GTCATTTCCTACATCTTCGCAGG 59.442 47.826 0.00 0.00 0.00 4.85
1876 2301 3.973206 TTTCCTACATCTTCGCAGGAA 57.027 42.857 0.00 0.00 43.70 3.36
1877 2302 4.487714 TTTCCTACATCTTCGCAGGAAT 57.512 40.909 2.94 0.00 44.51 3.01
1887 2312 6.769822 ACATCTTCGCAGGAATATCAGATTTT 59.230 34.615 0.00 0.00 0.00 1.82
1890 2315 7.726216 TCTTCGCAGGAATATCAGATTTTCTA 58.274 34.615 11.93 0.00 0.00 2.10
1891 2316 7.653713 TCTTCGCAGGAATATCAGATTTTCTAC 59.346 37.037 11.93 3.54 0.00 2.59
1947 2467 5.594199 ACTTATGACACCCCCTTAAACTT 57.406 39.130 0.00 0.00 0.00 2.66
1963 2483 8.870879 CCCTTAAACTTCACTAGATTAGAAACG 58.129 37.037 0.00 0.00 0.00 3.60
1971 2491 4.907010 CACTAGATTAGAAACGCGAGCTAG 59.093 45.833 15.93 13.58 0.00 3.42
1976 2496 1.429463 AGAAACGCGAGCTAGTTTGG 58.571 50.000 15.93 0.00 40.24 3.28
1988 2508 5.165961 AGCTAGTTTGGCTATTCAGTTCA 57.834 39.130 0.00 0.00 38.36 3.18
1990 2510 4.938226 GCTAGTTTGGCTATTCAGTTCAGT 59.062 41.667 0.00 0.00 0.00 3.41
1993 2513 7.201565 GCTAGTTTGGCTATTCAGTTCAGTAAG 60.202 40.741 0.00 0.00 0.00 2.34
1994 2514 5.940470 AGTTTGGCTATTCAGTTCAGTAAGG 59.060 40.000 0.00 0.00 0.00 2.69
1995 2515 5.755409 TTGGCTATTCAGTTCAGTAAGGA 57.245 39.130 0.00 0.00 0.00 3.36
1996 2516 5.086104 TGGCTATTCAGTTCAGTAAGGAC 57.914 43.478 0.00 0.00 0.00 3.85
1997 2517 4.530553 TGGCTATTCAGTTCAGTAAGGACA 59.469 41.667 0.00 0.00 0.00 4.02
1998 2518 5.012664 TGGCTATTCAGTTCAGTAAGGACAA 59.987 40.000 0.00 0.00 0.00 3.18
1999 2519 5.351740 GGCTATTCAGTTCAGTAAGGACAAC 59.648 44.000 0.00 0.00 0.00 3.32
2000 2520 5.062308 GCTATTCAGTTCAGTAAGGACAACG 59.938 44.000 0.00 0.00 0.00 4.10
2001 2521 3.380479 TCAGTTCAGTAAGGACAACGG 57.620 47.619 0.00 0.00 0.00 4.44
2002 2522 2.696707 TCAGTTCAGTAAGGACAACGGT 59.303 45.455 0.00 0.00 0.00 4.83
2003 2523 2.800544 CAGTTCAGTAAGGACAACGGTG 59.199 50.000 0.00 0.00 0.00 4.94
2004 2524 2.140717 GTTCAGTAAGGACAACGGTGG 58.859 52.381 4.97 0.00 0.00 4.61
2005 2525 0.034337 TCAGTAAGGACAACGGTGGC 59.966 55.000 4.97 0.00 0.00 5.01
2011 2531 4.397348 GACAACGGTGGCCTCATT 57.603 55.556 4.97 0.00 0.00 2.57
2012 2532 2.641197 GACAACGGTGGCCTCATTT 58.359 52.632 4.97 0.00 0.00 2.32
2013 2533 0.521735 GACAACGGTGGCCTCATTTC 59.478 55.000 4.97 0.00 0.00 2.17
2014 2534 0.179004 ACAACGGTGGCCTCATTTCA 60.179 50.000 4.97 0.00 0.00 2.69
2015 2535 0.958091 CAACGGTGGCCTCATTTCAA 59.042 50.000 3.32 0.00 0.00 2.69
2016 2536 1.545582 CAACGGTGGCCTCATTTCAAT 59.454 47.619 3.32 0.00 0.00 2.57
2017 2537 1.463674 ACGGTGGCCTCATTTCAATC 58.536 50.000 3.32 0.00 0.00 2.67
2018 2538 1.271871 ACGGTGGCCTCATTTCAATCA 60.272 47.619 3.32 0.00 0.00 2.57
2019 2539 1.818060 CGGTGGCCTCATTTCAATCAA 59.182 47.619 3.32 0.00 0.00 2.57
2020 2540 2.230992 CGGTGGCCTCATTTCAATCAAA 59.769 45.455 3.32 0.00 0.00 2.69
2021 2541 3.305950 CGGTGGCCTCATTTCAATCAAAA 60.306 43.478 3.32 0.00 0.00 2.44
2022 2542 4.640364 GGTGGCCTCATTTCAATCAAAAA 58.360 39.130 3.32 0.00 0.00 1.94
2054 2574 4.104143 GGCAACGATGACCTACCG 57.896 61.111 0.00 0.00 0.00 4.02
2079 2599 1.792118 AAAAAGGCCGGCTCGTTCAC 61.792 55.000 28.56 7.55 0.00 3.18
2098 2620 6.307155 GTTCACTTGGTTGTCAATTCTATCG 58.693 40.000 0.00 0.00 34.45 2.92
2105 2627 4.688879 GGTTGTCAATTCTATCGTGTCACA 59.311 41.667 3.42 0.00 0.00 3.58
2108 2630 4.242475 GTCAATTCTATCGTGTCACACCA 58.758 43.478 1.24 0.00 0.00 4.17
2175 2697 3.619483 CCATTTGCCATGCACAGTAAATG 59.381 43.478 23.30 23.30 42.32 2.32
2176 2698 3.316071 TTTGCCATGCACAGTAAATGG 57.684 42.857 8.71 8.71 43.18 3.16
2177 2699 2.212812 TGCCATGCACAGTAAATGGA 57.787 45.000 15.15 1.61 43.00 3.41
2178 2700 2.523245 TGCCATGCACAGTAAATGGAA 58.477 42.857 15.15 4.46 43.00 3.53
2179 2701 2.492881 TGCCATGCACAGTAAATGGAAG 59.507 45.455 15.15 0.00 43.00 3.46
2180 2702 2.736400 GCCATGCACAGTAAATGGAAGC 60.736 50.000 15.15 0.19 43.00 3.86
2181 2703 2.756760 CCATGCACAGTAAATGGAAGCT 59.243 45.455 7.63 0.00 43.00 3.74
2182 2704 3.428452 CCATGCACAGTAAATGGAAGCTG 60.428 47.826 7.63 0.00 43.00 4.24
2183 2705 3.138884 TGCACAGTAAATGGAAGCTGA 57.861 42.857 0.00 0.00 33.57 4.26
2184 2706 3.485394 TGCACAGTAAATGGAAGCTGAA 58.515 40.909 0.00 0.00 33.57 3.02
2193 2715 1.243342 TGGAAGCTGAATTGCACCCG 61.243 55.000 0.00 0.00 33.31 5.28
2197 2719 2.480555 CTGAATTGCACCCGTCGC 59.519 61.111 0.00 0.00 0.00 5.19
2217 2740 5.733109 GTCGCTCAATATTTTCGTTTCTTCC 59.267 40.000 0.00 0.00 0.00 3.46
2222 2745 7.011828 TCAATATTTTCGTTTCTTCCCGATC 57.988 36.000 0.00 0.00 32.44 3.69
2230 2753 5.726397 TCGTTTCTTCCCGATCTTGATAAA 58.274 37.500 0.00 0.00 0.00 1.40
2231 2754 5.810587 TCGTTTCTTCCCGATCTTGATAAAG 59.189 40.000 0.00 0.00 0.00 1.85
2234 2757 7.464710 CGTTTCTTCCCGATCTTGATAAAGAAG 60.465 40.741 0.00 0.00 34.04 2.85
2236 2759 7.182817 TCTTCCCGATCTTGATAAAGAAGAA 57.817 36.000 0.00 0.00 36.48 2.52
2237 2760 7.268586 TCTTCCCGATCTTGATAAAGAAGAAG 58.731 38.462 13.88 13.88 36.48 2.85
2281 2818 3.751175 TGGATTTCTTACGGCTCTGTTTG 59.249 43.478 0.00 0.00 0.00 2.93
2287 2824 1.795768 TACGGCTCTGTTTGCTTCTG 58.204 50.000 0.00 0.00 0.00 3.02
2330 2867 1.811266 CGACACCATCTTCTGCGGG 60.811 63.158 0.00 0.00 0.00 6.13
2654 3195 4.773117 GTCCTCGCGACCACGTCC 62.773 72.222 3.71 0.00 41.98 4.79
2940 3526 1.800315 CGTCAAGGACTACGGCGTG 60.800 63.158 24.86 15.01 35.51 5.34
3000 3586 1.134965 CAGGACCAGTTCGTCATCCTC 60.135 57.143 0.00 0.00 37.72 3.71
3038 3630 1.388093 CGACAGATTCTTGCACAGTCG 59.612 52.381 5.13 5.13 40.81 4.18
3065 3659 8.535592 CAAACTATTTCTATTCTCAGTACAGCG 58.464 37.037 0.00 0.00 0.00 5.18
3083 3677 1.838568 CGGACTGATCATGCATGGCG 61.839 60.000 25.97 13.87 0.00 5.69
3166 3760 3.787001 CCGGACAGGGAGAAGGCC 61.787 72.222 0.00 0.00 35.97 5.19
3424 4033 2.901840 CCCGCCATGATTGGGACG 60.902 66.667 10.41 0.00 46.41 4.79
3501 4110 0.878523 CTCCGGTTTTCACACGCTGA 60.879 55.000 0.00 0.00 0.00 4.26
3508 4117 1.851021 TTTCACACGCTGATTGCCGG 61.851 55.000 0.00 0.00 38.78 6.13
3569 4178 4.873827 AGAAGAAACAAGACGCACTTTGTA 59.126 37.500 0.00 0.00 36.61 2.41
3580 4189 4.460505 ACGCACTTTGTACTTATTTTCGC 58.539 39.130 0.00 0.00 0.00 4.70
3597 4206 3.494378 CCTTGCATGGCTCTCGTG 58.506 61.111 5.58 0.00 35.53 4.35
3598 4207 1.376424 CCTTGCATGGCTCTCGTGT 60.376 57.895 5.58 0.00 34.91 4.49
3599 4208 0.957395 CCTTGCATGGCTCTCGTGTT 60.957 55.000 5.58 0.00 34.91 3.32
3602 4211 3.084579 CATGGCTCTCGTGTTCGC 58.915 61.111 0.00 0.00 36.96 4.70
3604 4213 3.282745 ATGGCTCTCGTGTTCGCGT 62.283 57.895 5.77 0.00 36.96 6.01
3605 4214 3.173240 GGCTCTCGTGTTCGCGTC 61.173 66.667 5.77 1.06 36.96 5.19
3606 4215 2.428569 GCTCTCGTGTTCGCGTCA 60.429 61.111 5.77 4.13 36.96 4.35
3626 4235 4.034510 GTCAAAAATGCCCTATGAGAGACG 59.965 45.833 0.00 0.00 0.00 4.18
3627 4236 2.246719 AAATGCCCTATGAGAGACGC 57.753 50.000 0.00 0.00 0.00 5.19
3688 4297 6.621316 AACGTCACAATTGTTGGTATACAA 57.379 33.333 8.77 0.00 41.81 2.41
3690 4299 6.607689 ACGTCACAATTGTTGGTATACAATG 58.392 36.000 8.77 0.00 45.44 2.82
3861 4471 4.553330 TTAGGGCTCTTTAGGTTCACAG 57.447 45.455 0.00 0.00 0.00 3.66
3862 4472 1.630878 AGGGCTCTTTAGGTTCACAGG 59.369 52.381 0.00 0.00 0.00 4.00
3880 4490 5.584649 TCACAGGATTATAAAAACGCAGGAG 59.415 40.000 0.00 0.00 0.00 3.69
3892 4502 2.960819 ACGCAGGAGTATGAAAGACAC 58.039 47.619 0.00 0.00 0.00 3.67
3906 4516 2.526888 AGACACGGGAATAGGACAGA 57.473 50.000 0.00 0.00 0.00 3.41
3918 4528 0.035152 AGGACAGAAATGGATGCGCA 60.035 50.000 14.96 14.96 0.00 6.09
3919 4529 0.810648 GGACAGAAATGGATGCGCAA 59.189 50.000 17.11 0.00 0.00 4.85
3923 4533 2.035704 ACAGAAATGGATGCGCAAAACA 59.964 40.909 17.11 14.68 0.00 2.83
3952 4562 7.487829 GGACTCGTAAACCGTAACACATAAATA 59.512 37.037 0.00 0.00 37.94 1.40
3953 4563 8.931385 ACTCGTAAACCGTAACACATAAATAT 57.069 30.769 0.00 0.00 37.94 1.28
3963 4574 9.745880 CCGTAACACATAAATATAGACTCTTGT 57.254 33.333 0.00 0.00 0.00 3.16
4013 4624 4.324267 AGGAAAAACACGGGAACATAGAG 58.676 43.478 0.00 0.00 0.00 2.43
4064 4676 8.682710 GTTACAAAACTATGGGCATTTAGATGA 58.317 33.333 0.00 0.00 32.39 2.92
4083 4695 7.187244 AGATGAAAGAATGTTCGATAGCATG 57.813 36.000 0.00 0.00 0.00 4.06
4111 4723 8.648557 AAAAACAAAGAAATTCTACCAAGAGC 57.351 30.769 0.00 0.00 31.96 4.09
4123 4735 9.959721 AATTCTACCAAGAGCTTTTAACAGATA 57.040 29.630 0.00 0.00 31.96 1.98
4124 4736 9.959721 ATTCTACCAAGAGCTTTTAACAGATAA 57.040 29.630 0.00 0.00 31.96 1.75
4190 4802 3.366052 TCCTAAGGATTTCAACCCTGC 57.634 47.619 0.00 0.00 32.12 4.85
4199 4811 4.381932 GGATTTCAACCCTGCGAATCAAAT 60.382 41.667 0.00 0.00 31.60 2.32
4200 4812 3.574284 TTCAACCCTGCGAATCAAATG 57.426 42.857 0.00 0.00 0.00 2.32
4216 4828 4.163427 TCAAATGGCCACCATAGGAAAAA 58.837 39.130 8.16 0.00 44.40 1.94
4289 4901 4.131649 TCAAACGAGAACTCAACTTGGA 57.868 40.909 0.00 0.00 0.00 3.53
4325 4937 3.679502 GGAATTGGAAAAACGCTGGAATG 59.320 43.478 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.552114 CGGAATCGTAAAATATTCGTAGTAGAT 57.448 33.333 0.00 0.00 33.72 1.98
4 5 7.535258 GCGGAATCGTAAAATATTCGTAGTAGA 59.465 37.037 0.00 0.00 38.89 2.59
5 6 7.459348 CGCGGAATCGTAAAATATTCGTAGTAG 60.459 40.741 0.00 0.00 38.89 2.57
6 7 6.303022 CGCGGAATCGTAAAATATTCGTAGTA 59.697 38.462 0.00 0.00 38.89 1.82
7 8 5.116074 CGCGGAATCGTAAAATATTCGTAGT 59.884 40.000 0.00 0.00 38.89 2.73
8 9 5.442390 CCGCGGAATCGTAAAATATTCGTAG 60.442 44.000 24.07 0.00 38.89 3.51
9 10 4.382457 CCGCGGAATCGTAAAATATTCGTA 59.618 41.667 24.07 0.00 38.89 3.43
10 11 3.182972 CCGCGGAATCGTAAAATATTCGT 59.817 43.478 24.07 0.00 38.89 3.85
11 12 3.717830 CCGCGGAATCGTAAAATATTCG 58.282 45.455 24.07 0.00 38.89 3.34
12 13 3.476181 GCCGCGGAATCGTAAAATATTC 58.524 45.455 33.48 0.00 38.89 1.75
13 14 2.096614 CGCCGCGGAATCGTAAAATATT 60.097 45.455 33.48 0.00 38.89 1.28
14 15 1.458064 CGCCGCGGAATCGTAAAATAT 59.542 47.619 33.48 0.00 38.89 1.28
15 16 0.854062 CGCCGCGGAATCGTAAAATA 59.146 50.000 33.48 0.00 38.89 1.40
16 17 1.085501 ACGCCGCGGAATCGTAAAAT 61.086 50.000 33.48 3.36 38.89 1.82
17 18 1.290491 AACGCCGCGGAATCGTAAAA 61.290 50.000 33.48 0.00 38.89 1.52
18 19 0.457509 TAACGCCGCGGAATCGTAAA 60.458 50.000 33.48 17.36 38.89 2.01
19 20 0.457509 TTAACGCCGCGGAATCGTAA 60.458 50.000 33.48 18.93 38.89 3.18
20 21 0.457509 TTTAACGCCGCGGAATCGTA 60.458 50.000 33.48 12.33 38.89 3.43
21 22 1.689352 CTTTAACGCCGCGGAATCGT 61.689 55.000 33.48 26.37 38.89 3.73
22 23 1.012671 CTTTAACGCCGCGGAATCG 60.013 57.895 33.48 25.61 39.81 3.34
23 24 0.300789 CTCTTTAACGCCGCGGAATC 59.699 55.000 33.48 10.82 0.00 2.52
24 25 0.108520 TCTCTTTAACGCCGCGGAAT 60.109 50.000 33.48 16.49 0.00 3.01
25 26 0.108520 ATCTCTTTAACGCCGCGGAA 60.109 50.000 33.48 11.88 0.00 4.30
26 27 0.740149 TATCTCTTTAACGCCGCGGA 59.260 50.000 33.48 4.15 0.00 5.54
27 28 1.719780 GATATCTCTTTAACGCCGCGG 59.280 52.381 24.05 24.05 0.00 6.46
28 29 2.390938 TGATATCTCTTTAACGCCGCG 58.609 47.619 12.14 12.14 0.00 6.46
29 30 3.363084 GCTTGATATCTCTTTAACGCCGC 60.363 47.826 3.98 0.00 0.00 6.53
30 31 3.802139 TGCTTGATATCTCTTTAACGCCG 59.198 43.478 3.98 0.00 0.00 6.46
31 32 4.212214 CCTGCTTGATATCTCTTTAACGCC 59.788 45.833 3.98 0.00 0.00 5.68
32 33 4.319118 GCCTGCTTGATATCTCTTTAACGC 60.319 45.833 3.98 0.00 0.00 4.84
33 34 4.811024 TGCCTGCTTGATATCTCTTTAACG 59.189 41.667 3.98 0.00 0.00 3.18
34 35 6.874288 ATGCCTGCTTGATATCTCTTTAAC 57.126 37.500 3.98 0.00 0.00 2.01
37 38 9.750783 ATTTATATGCCTGCTTGATATCTCTTT 57.249 29.630 3.98 0.00 0.00 2.52
38 39 9.750783 AATTTATATGCCTGCTTGATATCTCTT 57.249 29.630 3.98 0.00 0.00 2.85
39 40 9.175312 CAATTTATATGCCTGCTTGATATCTCT 57.825 33.333 3.98 0.00 0.00 3.10
40 41 8.404000 CCAATTTATATGCCTGCTTGATATCTC 58.596 37.037 3.98 0.00 0.00 2.75
41 42 7.892241 ACCAATTTATATGCCTGCTTGATATCT 59.108 33.333 3.98 0.00 0.00 1.98
42 43 8.059798 ACCAATTTATATGCCTGCTTGATATC 57.940 34.615 0.00 0.00 0.00 1.63
43 44 9.532494 TTACCAATTTATATGCCTGCTTGATAT 57.468 29.630 0.00 0.00 0.00 1.63
44 45 8.932434 TTACCAATTTATATGCCTGCTTGATA 57.068 30.769 0.00 0.00 0.00 2.15
45 46 7.524367 GCTTACCAATTTATATGCCTGCTTGAT 60.524 37.037 0.00 0.00 0.00 2.57
46 47 6.239008 GCTTACCAATTTATATGCCTGCTTGA 60.239 38.462 0.00 0.00 0.00 3.02
47 48 5.922544 GCTTACCAATTTATATGCCTGCTTG 59.077 40.000 0.00 0.00 0.00 4.01
48 49 5.598005 TGCTTACCAATTTATATGCCTGCTT 59.402 36.000 0.00 0.00 0.00 3.91
49 50 5.139727 TGCTTACCAATTTATATGCCTGCT 58.860 37.500 0.00 0.00 0.00 4.24
50 51 5.452078 TGCTTACCAATTTATATGCCTGC 57.548 39.130 0.00 0.00 0.00 4.85
51 52 7.092716 GGATTGCTTACCAATTTATATGCCTG 58.907 38.462 0.00 0.00 44.02 4.85
52 53 6.071952 CGGATTGCTTACCAATTTATATGCCT 60.072 38.462 0.00 0.00 44.02 4.75
53 54 6.072175 TCGGATTGCTTACCAATTTATATGCC 60.072 38.462 0.00 0.00 44.02 4.40
54 55 6.908825 TCGGATTGCTTACCAATTTATATGC 58.091 36.000 0.00 0.00 44.02 3.14
55 56 8.349245 TGTTCGGATTGCTTACCAATTTATATG 58.651 33.333 0.00 0.00 44.02 1.78
56 57 8.458573 TGTTCGGATTGCTTACCAATTTATAT 57.541 30.769 0.00 0.00 44.02 0.86
57 58 7.867305 TGTTCGGATTGCTTACCAATTTATA 57.133 32.000 0.00 0.00 44.02 0.98
58 59 6.767524 TGTTCGGATTGCTTACCAATTTAT 57.232 33.333 0.00 0.00 44.02 1.40
59 60 6.576662 TTGTTCGGATTGCTTACCAATTTA 57.423 33.333 0.00 0.00 44.02 1.40
60 61 5.461032 TTGTTCGGATTGCTTACCAATTT 57.539 34.783 0.00 0.00 44.02 1.82
61 62 5.659440 ATTGTTCGGATTGCTTACCAATT 57.341 34.783 0.00 0.00 44.02 2.32
62 63 5.184864 TGAATTGTTCGGATTGCTTACCAAT 59.815 36.000 0.00 0.00 46.57 3.16
63 64 4.520874 TGAATTGTTCGGATTGCTTACCAA 59.479 37.500 0.00 0.00 37.94 3.67
64 65 4.075682 TGAATTGTTCGGATTGCTTACCA 58.924 39.130 0.00 0.00 0.00 3.25
65 66 4.394920 TCTGAATTGTTCGGATTGCTTACC 59.605 41.667 0.00 0.00 40.04 2.85
66 67 5.545658 TCTGAATTGTTCGGATTGCTTAC 57.454 39.130 0.00 0.00 40.04 2.34
67 68 6.567687 TTTCTGAATTGTTCGGATTGCTTA 57.432 33.333 2.35 0.00 44.09 3.09
68 69 5.452078 TTTCTGAATTGTTCGGATTGCTT 57.548 34.783 2.35 0.00 44.09 3.91
69 70 5.452078 TTTTCTGAATTGTTCGGATTGCT 57.548 34.783 2.35 0.00 44.09 3.91
109 110 9.219603 GCTAGTACTCATTTGCATATGGATTTA 57.780 33.333 15.86 1.85 0.00 1.40
110 111 7.941238 AGCTAGTACTCATTTGCATATGGATTT 59.059 33.333 15.86 2.66 0.00 2.17
111 112 7.456725 AGCTAGTACTCATTTGCATATGGATT 58.543 34.615 15.86 4.76 0.00 3.01
112 113 7.013823 AGCTAGTACTCATTTGCATATGGAT 57.986 36.000 15.86 7.96 0.00 3.41
113 114 6.425210 AGCTAGTACTCATTTGCATATGGA 57.575 37.500 15.86 0.00 0.00 3.41
114 115 7.382110 ACTAGCTAGTACTCATTTGCATATGG 58.618 38.462 24.97 9.80 34.13 2.74
118 119 9.078990 TGTATACTAGCTAGTACTCATTTGCAT 57.921 33.333 31.06 17.02 41.18 3.96
119 120 8.459911 TGTATACTAGCTAGTACTCATTTGCA 57.540 34.615 31.06 21.34 41.18 4.08
120 121 9.915629 AATGTATACTAGCTAGTACTCATTTGC 57.084 33.333 32.50 23.07 41.18 3.68
137 138 9.787435 TTGCGGGAAATCTTAATAATGTATACT 57.213 29.630 4.17 0.00 0.00 2.12
138 139 9.821662 GTTGCGGGAAATCTTAATAATGTATAC 57.178 33.333 0.00 0.00 0.00 1.47
143 144 9.912634 AATATGTTGCGGGAAATCTTAATAATG 57.087 29.630 0.00 0.00 0.00 1.90
147 148 7.823745 AGAATATGTTGCGGGAAATCTTAAT 57.176 32.000 0.00 0.00 0.00 1.40
157 158 8.006741 GCAATAAATAAAGAATATGTTGCGGG 57.993 34.615 0.00 0.00 31.57 6.13
172 173 4.890088 AGGCCGATCTACGCAATAAATAA 58.110 39.130 0.00 0.00 41.07 1.40
181 182 2.726832 ATCTTTAGGCCGATCTACGC 57.273 50.000 0.00 0.00 41.07 4.42
187 188 5.710984 CGAGTACATTATCTTTAGGCCGAT 58.289 41.667 0.00 0.00 0.00 4.18
191 192 6.479001 TCTTTGCGAGTACATTATCTTTAGGC 59.521 38.462 0.00 0.00 0.00 3.93
194 195 6.020121 GCGTCTTTGCGAGTACATTATCTTTA 60.020 38.462 0.00 0.00 0.00 1.85
202 203 2.080286 AAGCGTCTTTGCGAGTACAT 57.920 45.000 0.00 0.00 40.67 2.29
203 204 2.710220 TAAGCGTCTTTGCGAGTACA 57.290 45.000 0.00 0.00 40.67 2.90
204 205 3.301007 CGAATAAGCGTCTTTGCGAGTAC 60.301 47.826 0.00 0.00 40.67 2.73
205 206 2.850060 CGAATAAGCGTCTTTGCGAGTA 59.150 45.455 0.00 0.00 40.67 2.59
206 207 1.654105 CGAATAAGCGTCTTTGCGAGT 59.346 47.619 0.00 0.00 40.67 4.18
207 208 1.917955 TCGAATAAGCGTCTTTGCGAG 59.082 47.619 0.00 0.00 40.67 5.03
208 209 1.652124 GTCGAATAAGCGTCTTTGCGA 59.348 47.619 0.00 0.00 40.67 5.10
209 210 1.388768 TGTCGAATAAGCGTCTTTGCG 59.611 47.619 0.00 0.00 40.67 4.85
222 223 2.948979 TGCTGAACCTTTTGTGTCGAAT 59.051 40.909 0.00 0.00 0.00 3.34
251 252 2.148768 GAAAACGGAGGGGTGTAGTTG 58.851 52.381 0.00 0.00 0.00 3.16
260 261 0.611896 AGCCCAATGAAAACGGAGGG 60.612 55.000 0.00 0.00 39.33 4.30
262 263 0.447801 CGAGCCCAATGAAAACGGAG 59.552 55.000 0.00 0.00 0.00 4.63
270 271 2.434185 GACGTGCGAGCCCAATGA 60.434 61.111 0.00 0.00 0.00 2.57
271 272 3.853330 CGACGTGCGAGCCCAATG 61.853 66.667 0.00 0.00 44.57 2.82
286 287 2.349155 CGATGTCGACGGTTATGATCGA 60.349 50.000 20.97 0.00 42.27 3.59
287 288 1.969931 CGATGTCGACGGTTATGATCG 59.030 52.381 14.95 14.95 43.02 3.69
288 289 2.316792 CCGATGTCGACGGTTATGATC 58.683 52.381 11.62 5.45 44.57 2.92
304 313 1.750399 GGAATGTGCACAGGCCGAT 60.750 57.895 25.84 3.83 40.13 4.18
310 319 1.642037 CCGCTCTGGAATGTGCACAG 61.642 60.000 25.84 11.20 42.00 3.66
316 325 4.473520 CGCCCCGCTCTGGAATGT 62.474 66.667 0.00 0.00 42.00 2.71
350 359 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
351 360 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
352 361 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
364 373 2.738846 GGATAAGCTGTCTGTGTGTGTG 59.261 50.000 0.00 0.00 0.00 3.82
365 374 2.368548 TGGATAAGCTGTCTGTGTGTGT 59.631 45.455 0.00 0.00 0.00 3.72
366 375 2.738846 GTGGATAAGCTGTCTGTGTGTG 59.261 50.000 0.00 0.00 0.00 3.82
367 376 2.368548 TGTGGATAAGCTGTCTGTGTGT 59.631 45.455 0.00 0.00 0.00 3.72
368 377 3.044235 TGTGGATAAGCTGTCTGTGTG 57.956 47.619 0.00 0.00 0.00 3.82
369 378 3.369892 GGATGTGGATAAGCTGTCTGTGT 60.370 47.826 0.00 0.00 0.00 3.72
370 379 3.201290 GGATGTGGATAAGCTGTCTGTG 58.799 50.000 0.00 0.00 0.00 3.66
371 380 2.840038 TGGATGTGGATAAGCTGTCTGT 59.160 45.455 0.00 0.00 0.00 3.41
372 381 3.201290 GTGGATGTGGATAAGCTGTCTG 58.799 50.000 0.00 0.00 0.00 3.51
373 382 2.171448 GGTGGATGTGGATAAGCTGTCT 59.829 50.000 0.00 0.00 0.00 3.41
374 383 2.092968 TGGTGGATGTGGATAAGCTGTC 60.093 50.000 0.00 0.00 0.00 3.51
375 384 1.915489 TGGTGGATGTGGATAAGCTGT 59.085 47.619 0.00 0.00 0.00 4.40
376 385 2.715749 TGGTGGATGTGGATAAGCTG 57.284 50.000 0.00 0.00 0.00 4.24
377 386 3.737559 TTTGGTGGATGTGGATAAGCT 57.262 42.857 0.00 0.00 0.00 3.74
453 476 1.552226 CTTGCACAGCAACACAACAG 58.448 50.000 0.00 0.00 43.99 3.16
484 507 3.352990 AAGCCACACCCACACGGTT 62.353 57.895 0.00 0.00 45.36 4.44
542 583 4.785453 GGGTGCAGGGGAAGCTCG 62.785 72.222 0.00 0.00 0.00 5.03
543 584 3.650950 TGGGTGCAGGGGAAGCTC 61.651 66.667 0.00 0.00 0.00 4.09
575 616 2.691779 GGAGAGGGGAGACGGGAGA 61.692 68.421 0.00 0.00 0.00 3.71
576 617 2.123640 GGAGAGGGGAGACGGGAG 60.124 72.222 0.00 0.00 0.00 4.30
577 618 1.812113 AAAGGAGAGGGGAGACGGGA 61.812 60.000 0.00 0.00 0.00 5.14
578 619 0.032416 TAAAGGAGAGGGGAGACGGG 60.032 60.000 0.00 0.00 0.00 5.28
579 620 2.089600 ATAAAGGAGAGGGGAGACGG 57.910 55.000 0.00 0.00 0.00 4.79
580 621 3.006003 GCTTATAAAGGAGAGGGGAGACG 59.994 52.174 0.00 0.00 0.00 4.18
581 622 4.228010 AGCTTATAAAGGAGAGGGGAGAC 58.772 47.826 0.00 0.00 0.00 3.36
648 689 2.753931 GAACAAGGCAAGGGCGCAAG 62.754 60.000 10.83 0.00 42.47 4.01
649 690 2.837291 AACAAGGCAAGGGCGCAA 60.837 55.556 10.83 0.00 42.47 4.85
650 691 3.294493 GAACAAGGCAAGGGCGCA 61.294 61.111 10.83 0.00 42.47 6.09
651 692 4.404654 CGAACAAGGCAAGGGCGC 62.405 66.667 0.00 0.00 42.47 6.53
693 752 2.417936 GAACGGGGAGCGAGGATC 59.582 66.667 0.00 0.00 0.00 3.36
703 762 1.066358 GGTGTAGAAGAAGGAACGGGG 60.066 57.143 0.00 0.00 0.00 5.73
706 765 4.522722 AGAAGGTGTAGAAGAAGGAACG 57.477 45.455 0.00 0.00 0.00 3.95
750 809 1.606601 CTGGATAGGATCGGCCGGA 60.607 63.158 27.83 12.89 43.43 5.14
804 863 1.946768 TCTTTCTTGTTTGAGGGCGTG 59.053 47.619 0.00 0.00 0.00 5.34
806 865 2.162408 GGATCTTTCTTGTTTGAGGGCG 59.838 50.000 0.00 0.00 0.00 6.13
807 866 3.157087 TGGATCTTTCTTGTTTGAGGGC 58.843 45.455 0.00 0.00 0.00 5.19
809 868 4.655963 TCCTGGATCTTTCTTGTTTGAGG 58.344 43.478 0.00 0.00 0.00 3.86
810 869 5.555017 TCTCCTGGATCTTTCTTGTTTGAG 58.445 41.667 0.00 0.00 0.00 3.02
811 870 5.567037 TCTCCTGGATCTTTCTTGTTTGA 57.433 39.130 0.00 0.00 0.00 2.69
812 871 6.442112 GTTTCTCCTGGATCTTTCTTGTTTG 58.558 40.000 0.00 0.00 0.00 2.93
813 872 5.536538 GGTTTCTCCTGGATCTTTCTTGTTT 59.463 40.000 0.00 0.00 0.00 2.83
814 873 5.073428 GGTTTCTCCTGGATCTTTCTTGTT 58.927 41.667 0.00 0.00 0.00 2.83
815 874 4.104738 TGGTTTCTCCTGGATCTTTCTTGT 59.895 41.667 0.00 0.00 37.07 3.16
816 875 4.655963 TGGTTTCTCCTGGATCTTTCTTG 58.344 43.478 0.00 0.00 37.07 3.02
817 876 5.504853 GATGGTTTCTCCTGGATCTTTCTT 58.495 41.667 0.00 0.00 37.07 2.52
837 896 0.961753 TGGAGATGTCCCGATCGATG 59.038 55.000 18.66 7.52 43.15 3.84
838 897 1.252175 CTGGAGATGTCCCGATCGAT 58.748 55.000 18.66 0.00 43.15 3.59
839 898 1.456196 GCTGGAGATGTCCCGATCGA 61.456 60.000 18.66 0.00 43.15 3.59
864 927 2.188829 CAGGCCGGCCATGTGTATG 61.189 63.158 45.13 29.17 38.92 2.39
865 928 2.192979 CAGGCCGGCCATGTGTAT 59.807 61.111 45.13 22.35 38.92 2.29
866 929 3.326578 ACAGGCCGGCCATGTGTA 61.327 61.111 45.13 0.00 38.92 2.90
875 938 2.738213 AAGAACAGAGCACAGGCCGG 62.738 60.000 0.00 0.00 42.56 6.13
876 939 1.302033 AAGAACAGAGCACAGGCCG 60.302 57.895 0.00 0.00 42.56 6.13
877 940 1.860484 GCAAGAACAGAGCACAGGCC 61.860 60.000 0.00 0.00 42.56 5.19
882 952 1.155042 CTCAGGCAAGAACAGAGCAC 58.845 55.000 0.00 0.00 0.00 4.40
902 972 3.716195 TGATCGGCAGGGGTGGTG 61.716 66.667 0.00 0.00 0.00 4.17
905 975 4.838152 CGGTGATCGGCAGGGGTG 62.838 72.222 0.00 0.00 34.75 4.61
908 978 2.238847 TTTCTCGGTGATCGGCAGGG 62.239 60.000 0.00 0.00 39.77 4.45
910 980 0.108615 AGTTTCTCGGTGATCGGCAG 60.109 55.000 0.00 0.00 39.77 4.85
911 981 1.179152 TAGTTTCTCGGTGATCGGCA 58.821 50.000 0.00 0.00 39.77 5.69
913 983 3.377485 TCTCTTAGTTTCTCGGTGATCGG 59.623 47.826 0.00 0.00 39.77 4.18
914 984 4.593157 CTCTCTTAGTTTCTCGGTGATCG 58.407 47.826 0.00 0.00 40.90 3.69
915 985 4.142359 TGCTCTCTTAGTTTCTCGGTGATC 60.142 45.833 0.00 0.00 0.00 2.92
916 986 3.764434 TGCTCTCTTAGTTTCTCGGTGAT 59.236 43.478 0.00 0.00 0.00 3.06
917 987 3.154710 TGCTCTCTTAGTTTCTCGGTGA 58.845 45.455 0.00 0.00 0.00 4.02
937 1009 6.107901 TCTTCTTCTTCTTCTTCTCCCTTG 57.892 41.667 0.00 0.00 0.00 3.61
942 1014 9.196552 CTTCTTCTTCTTCTTCTTCTTCTTCTC 57.803 37.037 0.00 0.00 0.00 2.87
943 1015 7.657354 GCTTCTTCTTCTTCTTCTTCTTCTTCT 59.343 37.037 0.00 0.00 0.00 2.85
946 1018 7.015584 AGAGCTTCTTCTTCTTCTTCTTCTTCT 59.984 37.037 0.00 0.00 0.00 2.85
949 1021 6.295292 GGAGAGCTTCTTCTTCTTCTTCTTCT 60.295 42.308 0.00 0.00 0.00 2.85
957 1029 3.827302 TGTACGGAGAGCTTCTTCTTCTT 59.173 43.478 0.00 0.00 0.00 2.52
958 1030 3.422796 TGTACGGAGAGCTTCTTCTTCT 58.577 45.455 0.00 0.00 0.00 2.85
959 1031 3.851976 TGTACGGAGAGCTTCTTCTTC 57.148 47.619 0.00 0.00 0.00 2.87
960 1032 4.675671 CGATTGTACGGAGAGCTTCTTCTT 60.676 45.833 0.00 0.00 0.00 2.52
961 1033 3.181495 CGATTGTACGGAGAGCTTCTTCT 60.181 47.826 0.00 0.00 0.00 2.85
962 1034 3.109619 CGATTGTACGGAGAGCTTCTTC 58.890 50.000 0.00 0.00 0.00 2.87
963 1035 2.753452 TCGATTGTACGGAGAGCTTCTT 59.247 45.455 0.00 0.00 0.00 2.52
965 1037 2.722071 CTCGATTGTACGGAGAGCTTC 58.278 52.381 0.00 0.00 0.00 3.86
968 1040 2.874709 GCTCGATTGTACGGAGAGC 58.125 57.895 13.79 13.79 45.74 4.09
969 1041 1.268794 CCAGCTCGATTGTACGGAGAG 60.269 57.143 7.09 5.49 0.00 3.20
972 1044 1.813859 CCCAGCTCGATTGTACGGA 59.186 57.895 0.00 0.00 0.00 4.69
973 1045 1.883084 GCCCAGCTCGATTGTACGG 60.883 63.158 0.00 0.00 0.00 4.02
988 1070 2.663188 CCGCATTCTCGCTAGCCC 60.663 66.667 9.66 0.00 0.00 5.19
1209 1291 3.729965 AAGCAGAGGAGCGGCGATG 62.730 63.158 12.98 0.00 42.89 3.84
1210 1292 3.438017 GAAGCAGAGGAGCGGCGAT 62.438 63.158 12.98 2.76 42.89 4.58
1211 1293 4.135153 GAAGCAGAGGAGCGGCGA 62.135 66.667 12.98 0.00 42.89 5.54
1219 1301 1.077858 GCAAGGGAGGAAGCAGAGG 60.078 63.158 0.00 0.00 0.00 3.69
1229 1311 5.665916 AAATTCATAAACAGGCAAGGGAG 57.334 39.130 0.00 0.00 0.00 4.30
1238 1333 5.460646 ACCAGCGTGAAAATTCATAAACAG 58.539 37.500 0.00 0.00 39.73 3.16
1242 1337 7.247728 GTGATAACCAGCGTGAAAATTCATAA 58.752 34.615 0.00 0.00 39.73 1.90
1243 1338 6.456315 CGTGATAACCAGCGTGAAAATTCATA 60.456 38.462 0.00 0.00 39.73 2.15
1253 1348 0.731514 ACGTCGTGATAACCAGCGTG 60.732 55.000 0.00 0.00 31.14 5.34
1268 1370 1.139520 ACGCCACCGGTAATACGTC 59.860 57.895 6.87 0.00 39.22 4.34
1271 1373 1.134946 ACTACACGCCACCGGTAATAC 59.865 52.381 6.87 0.00 39.22 1.89
1332 1459 7.440523 AGTAGCAGAAACTTATGTTTGGAAG 57.559 36.000 11.15 0.95 45.36 3.46
1345 1472 2.924290 GACCATGTCGAGTAGCAGAAAC 59.076 50.000 0.00 0.00 0.00 2.78
1400 1576 2.178890 CGACTAGTCCCGACTCCCG 61.179 68.421 17.23 0.00 42.54 5.14
1405 1581 3.885521 CCGGCGACTAGTCCCGAC 61.886 72.222 35.09 21.89 42.22 4.79
1481 1657 9.199982 CCGATATCTATTTTATTTGGTACACGT 57.800 33.333 0.34 0.00 39.29 4.49
1542 1721 7.606073 TGAACCATCTCACGAAAATATCAGAAA 59.394 33.333 0.00 0.00 0.00 2.52
1555 1734 1.336887 ACCGAACTGAACCATCTCACG 60.337 52.381 0.00 0.00 0.00 4.35
1590 1790 1.087771 GTCGGGTGAATGGCCTAACG 61.088 60.000 3.32 0.00 0.00 3.18
1606 1809 2.390938 TCAAGAAGCAACACGTAGTCG 58.609 47.619 0.00 0.00 41.61 4.18
1609 1812 2.405357 CGTCTCAAGAAGCAACACGTAG 59.595 50.000 0.00 0.00 0.00 3.51
1620 1823 3.365472 TGATCCAGGATCGTCTCAAGAA 58.635 45.455 22.41 0.93 41.51 2.52
1643 1846 6.294508 CCGTATCCAAGAACCTTGTGAAAAAT 60.295 38.462 6.04 0.00 0.00 1.82
1646 1849 4.069304 CCGTATCCAAGAACCTTGTGAAA 58.931 43.478 6.04 0.00 0.00 2.69
1655 1858 0.373716 CAAGCGCCGTATCCAAGAAC 59.626 55.000 2.29 0.00 0.00 3.01
1769 1987 5.497464 TTGGATTCAGATACCAAGACACA 57.503 39.130 0.00 0.00 38.52 3.72
1772 1990 6.623767 GCAACTTTGGATTCAGATACCAAGAC 60.624 42.308 0.00 0.00 43.15 3.01
1815 2035 7.252612 TCTCCCATCACAATCAGTAAGTTAA 57.747 36.000 0.00 0.00 0.00 2.01
1849 2071 4.571984 TGCGAAGATGTAGGAAATGACATG 59.428 41.667 0.00 0.00 36.42 3.21
1854 2089 3.797039 TCCTGCGAAGATGTAGGAAATG 58.203 45.455 0.00 0.00 46.09 2.32
1861 2096 6.596309 ATCTGATATTCCTGCGAAGATGTA 57.404 37.500 0.00 0.00 30.06 2.29
1913 2339 7.776500 GGGGGTGTCATAAGTTTATAAAAGCTA 59.224 37.037 0.00 0.00 0.00 3.32
1915 2341 6.605995 AGGGGGTGTCATAAGTTTATAAAAGC 59.394 38.462 0.00 0.00 0.00 3.51
1916 2342 8.589701 AAGGGGGTGTCATAAGTTTATAAAAG 57.410 34.615 0.00 0.00 0.00 2.27
1921 2347 7.705700 AGTTTAAGGGGGTGTCATAAGTTTAT 58.294 34.615 0.00 0.00 0.00 1.40
1923 2349 5.960704 AGTTTAAGGGGGTGTCATAAGTTT 58.039 37.500 0.00 0.00 0.00 2.66
1925 2351 5.073965 TGAAGTTTAAGGGGGTGTCATAAGT 59.926 40.000 0.00 0.00 0.00 2.24
1927 2353 5.073965 AGTGAAGTTTAAGGGGGTGTCATAA 59.926 40.000 0.00 0.00 0.00 1.90
1928 2354 4.600111 AGTGAAGTTTAAGGGGGTGTCATA 59.400 41.667 0.00 0.00 0.00 2.15
1929 2355 3.397955 AGTGAAGTTTAAGGGGGTGTCAT 59.602 43.478 0.00 0.00 0.00 3.06
1936 2456 9.163899 GTTTCTAATCTAGTGAAGTTTAAGGGG 57.836 37.037 0.00 0.00 0.00 4.79
1947 2467 3.377485 AGCTCGCGTTTCTAATCTAGTGA 59.623 43.478 5.77 0.00 0.00 3.41
1963 2483 2.541762 CTGAATAGCCAAACTAGCTCGC 59.458 50.000 0.00 0.00 41.83 5.03
1971 2491 5.938125 TCCTTACTGAACTGAATAGCCAAAC 59.062 40.000 0.00 0.00 0.00 2.93
1976 2496 5.062308 CGTTGTCCTTACTGAACTGAATAGC 59.938 44.000 0.00 0.00 0.00 2.97
1988 2508 1.125711 AGGCCACCGTTGTCCTTACT 61.126 55.000 5.01 0.00 0.00 2.24
1990 2510 1.122632 TGAGGCCACCGTTGTCCTTA 61.123 55.000 5.01 0.00 0.00 2.69
1993 2513 0.893727 AAATGAGGCCACCGTTGTCC 60.894 55.000 5.01 0.00 0.00 4.02
1994 2514 0.521735 GAAATGAGGCCACCGTTGTC 59.478 55.000 5.01 0.00 0.00 3.18
1995 2515 0.179004 TGAAATGAGGCCACCGTTGT 60.179 50.000 5.01 0.00 0.00 3.32
1996 2516 0.958091 TTGAAATGAGGCCACCGTTG 59.042 50.000 5.01 0.00 0.00 4.10
1997 2517 1.818674 GATTGAAATGAGGCCACCGTT 59.181 47.619 5.01 0.41 0.00 4.44
1998 2518 1.271871 TGATTGAAATGAGGCCACCGT 60.272 47.619 5.01 0.00 0.00 4.83
1999 2519 1.462616 TGATTGAAATGAGGCCACCG 58.537 50.000 5.01 0.00 0.00 4.94
2000 2520 3.959535 TTTGATTGAAATGAGGCCACC 57.040 42.857 5.01 0.00 0.00 4.61
2019 2539 5.580691 CGTTGCCCTTTTCTCTTTTCTTTTT 59.419 36.000 0.00 0.00 0.00 1.94
2020 2540 5.105513 TCGTTGCCCTTTTCTCTTTTCTTTT 60.106 36.000 0.00 0.00 0.00 2.27
2021 2541 4.401202 TCGTTGCCCTTTTCTCTTTTCTTT 59.599 37.500 0.00 0.00 0.00 2.52
2022 2542 3.951680 TCGTTGCCCTTTTCTCTTTTCTT 59.048 39.130 0.00 0.00 0.00 2.52
2023 2543 3.551846 TCGTTGCCCTTTTCTCTTTTCT 58.448 40.909 0.00 0.00 0.00 2.52
2024 2544 3.982576 TCGTTGCCCTTTTCTCTTTTC 57.017 42.857 0.00 0.00 0.00 2.29
2025 2545 3.888930 TCATCGTTGCCCTTTTCTCTTTT 59.111 39.130 0.00 0.00 0.00 2.27
2026 2546 3.253432 GTCATCGTTGCCCTTTTCTCTTT 59.747 43.478 0.00 0.00 0.00 2.52
2027 2547 2.814336 GTCATCGTTGCCCTTTTCTCTT 59.186 45.455 0.00 0.00 0.00 2.85
2028 2548 2.427506 GTCATCGTTGCCCTTTTCTCT 58.572 47.619 0.00 0.00 0.00 3.10
2029 2549 1.468914 GGTCATCGTTGCCCTTTTCTC 59.531 52.381 0.00 0.00 0.00 2.87
2030 2550 1.073923 AGGTCATCGTTGCCCTTTTCT 59.926 47.619 0.00 0.00 0.00 2.52
2031 2551 1.534729 AGGTCATCGTTGCCCTTTTC 58.465 50.000 0.00 0.00 0.00 2.29
2038 2558 2.171725 GCCGGTAGGTCATCGTTGC 61.172 63.158 1.90 0.00 40.50 4.17
2064 2584 3.626924 AAGTGAACGAGCCGGCCT 61.627 61.111 26.15 10.99 0.00 5.19
2073 2593 4.552166 AGAATTGACAACCAAGTGAACG 57.448 40.909 0.00 0.00 38.31 3.95
2079 2599 5.408299 TGACACGATAGAATTGACAACCAAG 59.592 40.000 0.00 0.00 37.84 3.61
2098 2620 0.730265 TCTTTTGCGTGGTGTGACAC 59.270 50.000 7.29 7.29 37.99 3.67
2105 2627 7.472543 GTGATAGATTTTATCTTTTGCGTGGT 58.527 34.615 0.00 0.00 40.76 4.16
2108 2630 6.715464 CCGTGATAGATTTTATCTTTTGCGT 58.285 36.000 0.00 0.00 40.76 5.24
2175 2697 1.244019 ACGGGTGCAATTCAGCTTCC 61.244 55.000 0.00 0.00 42.57 3.46
2176 2698 0.169009 GACGGGTGCAATTCAGCTTC 59.831 55.000 0.00 2.45 42.57 3.86
2177 2699 1.577328 CGACGGGTGCAATTCAGCTT 61.577 55.000 0.00 0.00 42.57 3.74
2178 2700 2.034879 CGACGGGTGCAATTCAGCT 61.035 57.895 0.00 0.00 42.57 4.24
2179 2701 2.480555 CGACGGGTGCAATTCAGC 59.519 61.111 0.00 0.00 42.24 4.26
2180 2702 1.970917 GAGCGACGGGTGCAATTCAG 61.971 60.000 0.00 0.00 33.85 3.02
2181 2703 2.031919 AGCGACGGGTGCAATTCA 59.968 55.556 0.00 0.00 33.85 2.57
2182 2704 1.573829 TTGAGCGACGGGTGCAATTC 61.574 55.000 0.00 0.00 33.85 2.17
2183 2705 0.960364 ATTGAGCGACGGGTGCAATT 60.960 50.000 0.00 0.00 33.85 2.32
2184 2706 0.107897 TATTGAGCGACGGGTGCAAT 60.108 50.000 0.00 0.00 34.05 3.56
2193 2715 5.733109 GGAAGAAACGAAAATATTGAGCGAC 59.267 40.000 10.58 3.99 0.00 5.19
2197 2719 6.417191 TCGGGAAGAAACGAAAATATTGAG 57.583 37.500 0.00 0.00 36.01 3.02
2217 2740 8.256611 TGAAACTTCTTCTTTATCAAGATCGG 57.743 34.615 0.00 0.00 38.89 4.18
2236 2759 8.846211 TCCAGAAGAAACGAAAATATTGAAACT 58.154 29.630 0.00 0.00 0.00 2.66
2237 2760 9.626045 ATCCAGAAGAAACGAAAATATTGAAAC 57.374 29.630 0.00 0.00 0.00 2.78
2768 3353 1.134694 GCAAACCAGATTCGACCGC 59.865 57.895 0.00 0.00 0.00 5.68
2981 3567 1.187087 GAGGATGACGAACTGGTCCT 58.813 55.000 0.00 0.00 41.81 3.85
3038 3630 8.331742 GCTGTACTGAGAATAGAAATAGTTTGC 58.668 37.037 3.61 0.00 0.00 3.68
3043 3635 6.858993 GTCCGCTGTACTGAGAATAGAAATAG 59.141 42.308 3.61 0.00 0.00 1.73
3065 3659 0.533531 TCGCCATGCATGATCAGTCC 60.534 55.000 28.31 6.01 0.00 3.85
3083 3677 1.457346 CAGACCTGCCCAAGATGTTC 58.543 55.000 0.00 0.00 0.00 3.18
3145 3739 3.358076 CTTCTCCCTGTCCGGCGTC 62.358 68.421 6.01 0.00 0.00 5.19
3291 3892 2.278142 GCAATGCAATCGCGGTCC 60.278 61.111 6.13 0.00 42.97 4.46
3325 3926 2.967397 CAAGTGGACGGGTCGCTA 59.033 61.111 0.00 0.00 0.00 4.26
3408 4017 2.901840 CCGTCCCAATCATGGCGG 60.902 66.667 0.00 0.00 46.09 6.13
3424 4033 3.499737 CCGGTCATTCGTGCAGCC 61.500 66.667 0.00 0.00 0.00 4.85
3468 4077 2.894307 CCGGAGAAATTTTCGGTGAC 57.106 50.000 15.72 0.00 37.92 3.67
3479 4088 0.658897 GCGTGTGAAAACCGGAGAAA 59.341 50.000 9.46 0.00 0.00 2.52
3501 4110 0.828022 TCCTCGTACATTCCGGCAAT 59.172 50.000 0.00 0.00 0.00 3.56
3508 4117 1.859080 GCCGTTGATCCTCGTACATTC 59.141 52.381 0.00 0.00 0.00 2.67
3569 4178 2.417243 GCCATGCAAGGCGAAAATAAGT 60.417 45.455 18.44 0.00 46.12 2.24
3580 4189 0.957395 AACACGAGAGCCATGCAAGG 60.957 55.000 2.86 2.86 0.00 3.61
3597 4206 0.039527 AGGGCATTTTTGACGCGAAC 60.040 50.000 15.93 7.16 0.00 3.95
3598 4207 1.524848 TAGGGCATTTTTGACGCGAA 58.475 45.000 15.93 0.00 0.00 4.70
3599 4208 1.400142 CATAGGGCATTTTTGACGCGA 59.600 47.619 15.93 0.00 0.00 5.87
3602 4211 4.034510 GTCTCTCATAGGGCATTTTTGACG 59.965 45.833 0.00 0.00 0.00 4.35
3604 4213 4.191544 CGTCTCTCATAGGGCATTTTTGA 58.808 43.478 0.00 0.00 0.00 2.69
3605 4214 3.242870 GCGTCTCTCATAGGGCATTTTTG 60.243 47.826 0.00 0.00 0.00 2.44
3606 4215 2.945668 GCGTCTCTCATAGGGCATTTTT 59.054 45.455 0.00 0.00 0.00 1.94
3641 4250 7.581213 TTTCCCATCATGTACACCAATATTC 57.419 36.000 0.00 0.00 0.00 1.75
3642 4251 7.416213 CGTTTTCCCATCATGTACACCAATATT 60.416 37.037 0.00 0.00 0.00 1.28
3643 4252 6.039270 CGTTTTCCCATCATGTACACCAATAT 59.961 38.462 0.00 0.00 0.00 1.28
3806 4416 4.990426 AGGCTCAAAATTTGGTCAATTTCG 59.010 37.500 5.83 0.00 43.20 3.46
3861 4471 7.724305 TCATACTCCTGCGTTTTTATAATCC 57.276 36.000 0.00 0.00 0.00 3.01
3862 4472 9.651718 CTTTCATACTCCTGCGTTTTTATAATC 57.348 33.333 0.00 0.00 0.00 1.75
3880 4490 5.048507 GTCCTATTCCCGTGTCTTTCATAC 58.951 45.833 0.00 0.00 0.00 2.39
3892 4502 3.838244 TCCATTTCTGTCCTATTCCCG 57.162 47.619 0.00 0.00 0.00 5.14
3906 4516 1.431496 GCTGTTTTGCGCATCCATTT 58.569 45.000 12.75 0.00 0.00 2.32
3918 4528 1.869132 GGTTTACGAGTCCGCTGTTTT 59.131 47.619 0.00 0.00 39.95 2.43
3919 4529 1.505425 GGTTTACGAGTCCGCTGTTT 58.495 50.000 0.00 0.00 39.95 2.83
3952 4562 7.981789 TGAGAATTATGCGAAACAAGAGTCTAT 59.018 33.333 0.00 0.00 0.00 1.98
3953 4563 7.320399 TGAGAATTATGCGAAACAAGAGTCTA 58.680 34.615 0.00 0.00 0.00 2.59
3954 4564 6.166279 TGAGAATTATGCGAAACAAGAGTCT 58.834 36.000 0.00 0.00 0.00 3.24
3963 4574 5.150683 CGGTGTTTTGAGAATTATGCGAAA 58.849 37.500 0.00 0.00 0.00 3.46
4013 4624 6.402222 CCTATAGGATACAAGAAGACATGCC 58.598 44.000 14.11 0.00 37.39 4.40
4047 4659 8.174733 ACATTCTTTCATCTAAATGCCCATAG 57.825 34.615 0.00 0.00 33.42 2.23
4048 4660 8.537728 AACATTCTTTCATCTAAATGCCCATA 57.462 30.769 0.00 0.00 33.42 2.74
4049 4661 7.427989 AACATTCTTTCATCTAAATGCCCAT 57.572 32.000 0.00 0.00 33.42 4.00
4050 4662 6.404623 CGAACATTCTTTCATCTAAATGCCCA 60.405 38.462 0.00 0.00 33.42 5.36
4051 4663 5.973565 CGAACATTCTTTCATCTAAATGCCC 59.026 40.000 0.00 0.00 33.42 5.36
4064 4676 6.757897 TTTCCATGCTATCGAACATTCTTT 57.242 33.333 0.00 0.00 0.00 2.52
4190 4802 2.294233 CCTATGGTGGCCATTTGATTCG 59.706 50.000 9.72 0.00 42.23 3.34
4216 4828 6.101005 TGGAGGATTTGGAACCTTTGAATTTT 59.899 34.615 0.00 0.00 36.57 1.82
4217 4829 5.606329 TGGAGGATTTGGAACCTTTGAATTT 59.394 36.000 0.00 0.00 36.57 1.82
4218 4830 5.154418 TGGAGGATTTGGAACCTTTGAATT 58.846 37.500 0.00 0.00 36.57 2.17
4219 4831 4.750941 TGGAGGATTTGGAACCTTTGAAT 58.249 39.130 0.00 0.00 36.57 2.57
4255 4867 8.433421 AGTTCTCGTTTGATTCAAAAGAAGTA 57.567 30.769 21.57 12.55 40.13 2.24
4257 4869 7.409697 TGAGTTCTCGTTTGATTCAAAAGAAG 58.590 34.615 22.28 17.26 40.13 2.85
4261 4873 7.083875 AGTTGAGTTCTCGTTTGATTCAAAA 57.916 32.000 13.21 0.00 35.03 2.44
4289 4901 9.844257 TTTTTCCAATTCCTATGAAACAAACAT 57.156 25.926 0.00 0.00 33.32 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.