Multiple sequence alignment - TraesCS1A01G228000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G228000 chr1A 100.000 4449 0 0 1 4449 399233361 399228913 0.000000e+00 8216.0
1 TraesCS1A01G228000 chr1A 88.943 1022 93 11 2441 3456 399244176 399243169 0.000000e+00 1243.0
2 TraesCS1A01G228000 chr1A 83.721 989 134 21 2452 3431 399472646 399471676 0.000000e+00 909.0
3 TraesCS1A01G228000 chr1A 78.954 746 65 50 673 1379 399246346 399245654 1.480000e-114 424.0
4 TraesCS1A01G228000 chr1A 80.984 447 50 14 3111 3529 399423745 399423306 5.550000e-84 322.0
5 TraesCS1A01G228000 chr1A 88.496 226 20 1 1090 1309 399473951 399473726 7.340000e-68 268.0
6 TraesCS1A01G228000 chr1A 85.600 125 16 2 1960 2083 399244983 399244860 3.610000e-26 130.0
7 TraesCS1A01G228000 chr1A 91.304 69 6 0 247 315 551582337 551582269 1.320000e-15 95.3
8 TraesCS1A01G228000 chr1A 89.855 69 7 0 247 315 95850282 95850350 6.130000e-14 89.8
9 TraesCS1A01G228000 chr1A 89.855 69 7 0 247 315 320485668 320485600 6.130000e-14 89.8
10 TraesCS1A01G228000 chr1D 91.989 2147 116 25 2346 4449 317997247 317995114 0.000000e+00 2961.0
11 TraesCS1A01G228000 chr1D 89.362 1128 94 17 2441 3551 318102332 318101214 0.000000e+00 1395.0
12 TraesCS1A01G228000 chr1D 83.499 1006 152 14 2432 3431 318162505 318161508 0.000000e+00 926.0
13 TraesCS1A01G228000 chr1D 82.777 749 60 33 603 1322 317999532 317998824 4.920000e-169 604.0
14 TraesCS1A01G228000 chr1D 91.167 317 12 10 1949 2259 317998095 317997789 2.480000e-112 416.0
15 TraesCS1A01G228000 chr1D 89.841 315 11 11 1069 1379 318103719 318103422 6.980000e-103 385.0
16 TraesCS1A01G228000 chr1D 80.769 442 54 16 3112 3529 318124803 318124369 2.580000e-82 316.0
17 TraesCS1A01G228000 chr1D 87.983 233 24 2 8 240 318083607 318083379 5.670000e-69 272.0
18 TraesCS1A01G228000 chr1D 88.372 215 19 2 1096 1304 318163902 318163688 2.050000e-63 254.0
19 TraesCS1A01G228000 chr1D 91.860 86 4 2 1353 1438 317998825 317998743 2.810000e-22 117.0
20 TraesCS1A01G228000 chr1B 90.423 2130 113 30 2381 4449 429766480 429764381 0.000000e+00 2719.0
21 TraesCS1A01G228000 chr1B 87.623 1519 86 54 411 1881 429768761 429767297 0.000000e+00 1670.0
22 TraesCS1A01G228000 chr1B 89.048 1114 88 14 2444 3545 429900323 429899232 0.000000e+00 1351.0
23 TraesCS1A01G228000 chr1B 84.906 530 65 10 2911 3431 429977020 429976497 5.100000e-144 521.0
24 TraesCS1A01G228000 chr1B 79.621 844 71 43 593 1379 429902448 429901649 3.070000e-141 512.0
25 TraesCS1A01G228000 chr1B 92.000 275 13 7 1 275 429808505 429808240 1.170000e-100 377.0
26 TraesCS1A01G228000 chr1B 91.463 246 10 7 1867 2106 429767278 429767038 1.190000e-85 327.0
27 TraesCS1A01G228000 chr1B 88.889 216 18 2 1095 1304 429978917 429978702 1.230000e-65 261.0
28 TraesCS1A01G228000 chr1B 78.132 439 55 19 3111 3522 429917678 429917254 1.600000e-59 241.0
29 TraesCS1A01G228000 chr1B 88.000 125 13 2 1960 2083 429900752 429900629 3.590000e-31 147.0
30 TraesCS1A01G228000 chr1B 85.981 107 14 1 314 419 429775024 429774918 3.640000e-21 113.0
31 TraesCS1A01G228000 chr6A 83.709 755 113 8 2441 3188 612595245 612595996 0.000000e+00 704.0
32 TraesCS1A01G228000 chr2D 87.500 216 21 2 1095 1304 79517105 79516890 1.240000e-60 244.0
33 TraesCS1A01G228000 chr3B 92.135 89 5 2 1860 1948 666611621 666611535 1.680000e-24 124.0
34 TraesCS1A01G228000 chr2B 91.549 71 6 0 245 315 774662039 774661969 1.020000e-16 99.0
35 TraesCS1A01G228000 chr3A 91.304 69 6 0 247 315 7457494 7457426 1.320000e-15 95.3
36 TraesCS1A01G228000 chr3A 91.304 69 6 0 247 315 7464039 7463971 1.320000e-15 95.3
37 TraesCS1A01G228000 chr4B 91.045 67 6 0 249 315 460189783 460189849 1.700000e-14 91.6
38 TraesCS1A01G228000 chr2A 89.855 69 7 0 247 315 3529072 3529140 6.130000e-14 89.8
39 TraesCS1A01G228000 chr2A 89.855 69 7 0 247 315 676345921 676345989 6.130000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G228000 chr1A 399228913 399233361 4448 True 8216.0 8216 100.000000 1 4449 1 chr1A.!!$R2 4448
1 TraesCS1A01G228000 chr1A 399243169 399246346 3177 True 599.0 1243 84.499000 673 3456 3 chr1A.!!$R5 2783
2 TraesCS1A01G228000 chr1A 399471676 399473951 2275 True 588.5 909 86.108500 1090 3431 2 chr1A.!!$R6 2341
3 TraesCS1A01G228000 chr1D 317995114 317999532 4418 True 1024.5 2961 89.448250 603 4449 4 chr1D.!!$R3 3846
4 TraesCS1A01G228000 chr1D 318101214 318103719 2505 True 890.0 1395 89.601500 1069 3551 2 chr1D.!!$R4 2482
5 TraesCS1A01G228000 chr1D 318161508 318163902 2394 True 590.0 926 85.935500 1096 3431 2 chr1D.!!$R5 2335
6 TraesCS1A01G228000 chr1B 429764381 429768761 4380 True 1572.0 2719 89.836333 411 4449 3 chr1B.!!$R4 4038
7 TraesCS1A01G228000 chr1B 429899232 429902448 3216 True 670.0 1351 85.556333 593 3545 3 chr1B.!!$R5 2952
8 TraesCS1A01G228000 chr1B 429976497 429978917 2420 True 391.0 521 86.897500 1095 3431 2 chr1B.!!$R6 2336
9 TraesCS1A01G228000 chr6A 612595245 612595996 751 False 704.0 704 83.709000 2441 3188 1 chr6A.!!$F1 747


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 404 0.179250 CGTCGCACATTTCAGAACGG 60.179 55.0 0.0 0.0 0.00 4.44 F
944 1003 0.584876 GCTAAAGAAACCGTGCGTGT 59.415 50.0 0.0 0.0 0.00 4.49 F
1923 2818 0.178068 TCTATCGGAGCAAAGTGCCC 59.822 55.0 0.0 0.0 46.52 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1309 1399 0.034186 AAAGCAGGCGATGGATGGAA 60.034 50.0 0.0 0.0 0.00 3.53 R
2604 4860 0.389166 CAGAGCTTCTTCTCGCCGTT 60.389 55.0 0.0 0.0 38.12 4.44 R
3698 6039 0.103208 CAGAGACGGAGGCATACACC 59.897 60.0 0.0 0.0 0.00 4.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.930826 GGAGAAAGTCCACCTCAACA 57.069 50.000 0.00 0.00 46.10 3.33
32 33 3.425162 GGAGAAAGTCCACCTCAACAT 57.575 47.619 0.00 0.00 46.10 2.71
33 34 3.077359 GGAGAAAGTCCACCTCAACATG 58.923 50.000 0.00 0.00 46.10 3.21
34 35 2.485814 GAGAAAGTCCACCTCAACATGC 59.514 50.000 0.00 0.00 0.00 4.06
35 36 2.158623 AGAAAGTCCACCTCAACATGCA 60.159 45.455 0.00 0.00 0.00 3.96
36 37 2.363306 AAGTCCACCTCAACATGCAA 57.637 45.000 0.00 0.00 0.00 4.08
37 38 2.363306 AGTCCACCTCAACATGCAAA 57.637 45.000 0.00 0.00 0.00 3.68
38 39 2.880443 AGTCCACCTCAACATGCAAAT 58.120 42.857 0.00 0.00 0.00 2.32
39 40 4.032960 AGTCCACCTCAACATGCAAATA 57.967 40.909 0.00 0.00 0.00 1.40
40 41 4.406456 AGTCCACCTCAACATGCAAATAA 58.594 39.130 0.00 0.00 0.00 1.40
41 42 4.460382 AGTCCACCTCAACATGCAAATAAG 59.540 41.667 0.00 0.00 0.00 1.73
42 43 3.193267 TCCACCTCAACATGCAAATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
55 56 5.975282 TGCAAATAAGCATGCTAATTTCCA 58.025 33.333 23.00 11.87 42.97 3.53
56 57 5.811613 TGCAAATAAGCATGCTAATTTCCAC 59.188 36.000 23.00 7.55 42.97 4.02
57 58 6.044682 GCAAATAAGCATGCTAATTTCCACT 58.955 36.000 23.00 4.09 39.46 4.00
58 59 6.199719 GCAAATAAGCATGCTAATTTCCACTC 59.800 38.462 23.00 0.02 39.46 3.51
59 60 7.486647 CAAATAAGCATGCTAATTTCCACTCT 58.513 34.615 23.00 2.67 0.00 3.24
60 61 8.623903 CAAATAAGCATGCTAATTTCCACTCTA 58.376 33.333 23.00 5.15 0.00 2.43
61 62 8.930846 AATAAGCATGCTAATTTCCACTCTAT 57.069 30.769 23.00 7.46 0.00 1.98
62 63 8.930846 ATAAGCATGCTAATTTCCACTCTATT 57.069 30.769 23.00 1.22 0.00 1.73
64 65 8.930846 AAGCATGCTAATTTCCACTCTATTAT 57.069 30.769 23.00 0.00 0.00 1.28
65 66 8.332996 AGCATGCTAATTTCCACTCTATTATG 57.667 34.615 21.21 0.00 0.00 1.90
66 67 7.025963 GCATGCTAATTTCCACTCTATTATGC 58.974 38.462 11.37 0.00 0.00 3.14
67 68 7.094463 GCATGCTAATTTCCACTCTATTATGCT 60.094 37.037 11.37 0.00 0.00 3.79
68 69 9.440773 CATGCTAATTTCCACTCTATTATGCTA 57.559 33.333 0.00 0.00 0.00 3.49
111 112 9.816354 ATTTTGCAACTACAAACTAATGAAACT 57.184 25.926 0.00 0.00 39.18 2.66
112 113 8.850454 TTTGCAACTACAAACTAATGAAACTC 57.150 30.769 0.00 0.00 34.68 3.01
113 114 7.561021 TGCAACTACAAACTAATGAAACTCA 57.439 32.000 0.00 0.00 0.00 3.41
114 115 7.639039 TGCAACTACAAACTAATGAAACTCAG 58.361 34.615 0.00 0.00 0.00 3.35
115 116 7.282224 TGCAACTACAAACTAATGAAACTCAGT 59.718 33.333 0.00 0.00 0.00 3.41
116 117 8.770828 GCAACTACAAACTAATGAAACTCAGTA 58.229 33.333 0.00 0.00 0.00 2.74
122 123 9.052759 ACAAACTAATGAAACTCAGTAAATCGT 57.947 29.630 0.00 0.00 0.00 3.73
126 127 9.871238 ACTAATGAAACTCAGTAAATCGTATGT 57.129 29.630 0.00 0.00 0.00 2.29
135 136 9.871238 ACTCAGTAAATCGTATGTATTTTCAGT 57.129 29.630 0.00 0.00 0.00 3.41
231 232 3.821995 GGCAACAACGTGTGAGGT 58.178 55.556 0.00 0.00 0.00 3.85
232 233 1.355210 GGCAACAACGTGTGAGGTG 59.645 57.895 0.00 0.00 0.00 4.00
233 234 1.355210 GCAACAACGTGTGAGGTGG 59.645 57.895 0.00 0.00 0.00 4.61
234 235 1.373590 GCAACAACGTGTGAGGTGGT 61.374 55.000 0.00 0.00 0.00 4.16
235 236 1.942677 CAACAACGTGTGAGGTGGTA 58.057 50.000 0.00 0.00 0.00 3.25
236 237 2.489971 CAACAACGTGTGAGGTGGTAT 58.510 47.619 0.00 0.00 0.00 2.73
237 238 2.450609 ACAACGTGTGAGGTGGTATC 57.549 50.000 0.00 0.00 0.00 2.24
238 239 1.689813 ACAACGTGTGAGGTGGTATCA 59.310 47.619 0.00 0.00 0.00 2.15
239 240 2.301870 ACAACGTGTGAGGTGGTATCAT 59.698 45.455 0.00 0.00 0.00 2.45
240 241 3.512329 ACAACGTGTGAGGTGGTATCATA 59.488 43.478 0.00 0.00 0.00 2.15
241 242 4.161565 ACAACGTGTGAGGTGGTATCATAT 59.838 41.667 0.00 0.00 0.00 1.78
242 243 4.322080 ACGTGTGAGGTGGTATCATATG 57.678 45.455 0.00 0.00 32.75 1.78
243 244 3.704566 ACGTGTGAGGTGGTATCATATGT 59.295 43.478 1.90 0.00 34.40 2.29
244 245 4.161565 ACGTGTGAGGTGGTATCATATGTT 59.838 41.667 1.90 0.00 35.31 2.71
245 246 5.116180 CGTGTGAGGTGGTATCATATGTTT 58.884 41.667 1.90 0.00 0.00 2.83
246 247 5.234329 CGTGTGAGGTGGTATCATATGTTTC 59.766 44.000 1.90 0.00 0.00 2.78
247 248 5.527582 GTGTGAGGTGGTATCATATGTTTCC 59.472 44.000 1.90 2.64 0.00 3.13
248 249 5.428457 TGTGAGGTGGTATCATATGTTTCCT 59.572 40.000 1.90 3.92 0.00 3.36
249 250 5.992217 GTGAGGTGGTATCATATGTTTCCTC 59.008 44.000 1.90 12.03 39.24 3.71
250 251 5.905331 TGAGGTGGTATCATATGTTTCCTCT 59.095 40.000 20.38 13.92 39.44 3.69
251 252 6.179906 AGGTGGTATCATATGTTTCCTCTG 57.820 41.667 1.90 0.00 0.00 3.35
252 253 5.667626 AGGTGGTATCATATGTTTCCTCTGT 59.332 40.000 1.90 0.00 0.00 3.41
253 254 6.844388 AGGTGGTATCATATGTTTCCTCTGTA 59.156 38.462 1.90 0.00 0.00 2.74
254 255 7.347222 AGGTGGTATCATATGTTTCCTCTGTAA 59.653 37.037 1.90 0.00 0.00 2.41
255 256 7.990886 GGTGGTATCATATGTTTCCTCTGTAAA 59.009 37.037 1.90 0.00 0.00 2.01
256 257 9.046296 GTGGTATCATATGTTTCCTCTGTAAAG 57.954 37.037 1.90 0.00 0.00 1.85
257 258 8.988060 TGGTATCATATGTTTCCTCTGTAAAGA 58.012 33.333 1.90 0.00 0.00 2.52
258 259 9.832445 GGTATCATATGTTTCCTCTGTAAAGAA 57.168 33.333 1.90 0.00 0.00 2.52
270 271 9.444600 TTCCTCTGTAAAGAAATATAAAAGCGT 57.555 29.630 0.00 0.00 0.00 5.07
271 272 9.444600 TCCTCTGTAAAGAAATATAAAAGCGTT 57.555 29.630 0.00 0.00 0.00 4.84
319 320 8.494016 AAACGCTCTTATATTTCTTTAGTGCT 57.506 30.769 0.00 0.00 0.00 4.40
320 321 7.470289 ACGCTCTTATATTTCTTTAGTGCTG 57.530 36.000 0.00 0.00 0.00 4.41
321 322 7.265673 ACGCTCTTATATTTCTTTAGTGCTGA 58.734 34.615 0.00 0.00 0.00 4.26
322 323 7.764443 ACGCTCTTATATTTCTTTAGTGCTGAA 59.236 33.333 0.00 0.00 0.00 3.02
323 324 8.604035 CGCTCTTATATTTCTTTAGTGCTGAAA 58.396 33.333 0.00 0.00 34.75 2.69
333 334 8.865590 TTCTTTAGTGCTGAAATAAACAAACC 57.134 30.769 0.00 0.00 0.00 3.27
334 335 8.232913 TCTTTAGTGCTGAAATAAACAAACCT 57.767 30.769 0.00 0.00 0.00 3.50
335 336 9.344772 TCTTTAGTGCTGAAATAAACAAACCTA 57.655 29.630 0.00 0.00 0.00 3.08
338 339 7.158099 AGTGCTGAAATAAACAAACCTATCC 57.842 36.000 0.00 0.00 0.00 2.59
339 340 6.719370 AGTGCTGAAATAAACAAACCTATCCA 59.281 34.615 0.00 0.00 0.00 3.41
340 341 7.397192 AGTGCTGAAATAAACAAACCTATCCAT 59.603 33.333 0.00 0.00 0.00 3.41
341 342 8.034804 GTGCTGAAATAAACAAACCTATCCATT 58.965 33.333 0.00 0.00 0.00 3.16
342 343 8.034215 TGCTGAAATAAACAAACCTATCCATTG 58.966 33.333 0.00 0.00 0.00 2.82
343 344 8.034804 GCTGAAATAAACAAACCTATCCATTGT 58.965 33.333 0.00 0.00 38.85 2.71
344 345 9.573133 CTGAAATAAACAAACCTATCCATTGTC 57.427 33.333 0.00 0.00 36.33 3.18
345 346 9.308000 TGAAATAAACAAACCTATCCATTGTCT 57.692 29.630 0.00 0.00 36.33 3.41
346 347 9.788960 GAAATAAACAAACCTATCCATTGTCTC 57.211 33.333 0.00 0.00 36.33 3.36
347 348 5.880054 AAACAAACCTATCCATTGTCTCG 57.120 39.130 0.00 0.00 36.33 4.04
348 349 4.819105 ACAAACCTATCCATTGTCTCGA 57.181 40.909 0.00 0.00 32.02 4.04
349 350 4.504858 ACAAACCTATCCATTGTCTCGAC 58.495 43.478 0.00 0.00 32.02 4.20
350 351 3.821421 AACCTATCCATTGTCTCGACC 57.179 47.619 0.00 0.00 0.00 4.79
351 352 3.033659 ACCTATCCATTGTCTCGACCT 57.966 47.619 0.00 0.00 0.00 3.85
352 353 2.959707 ACCTATCCATTGTCTCGACCTC 59.040 50.000 0.00 0.00 0.00 3.85
353 354 2.030717 CCTATCCATTGTCTCGACCTCG 60.031 54.545 0.00 0.00 41.45 4.63
354 355 1.475403 ATCCATTGTCTCGACCTCGT 58.525 50.000 0.00 0.00 40.80 4.18
355 356 0.526211 TCCATTGTCTCGACCTCGTG 59.474 55.000 0.00 0.00 40.80 4.35
356 357 1.078759 CCATTGTCTCGACCTCGTGC 61.079 60.000 0.00 0.00 40.80 5.34
357 358 1.154016 ATTGTCTCGACCTCGTGCG 60.154 57.895 0.00 0.00 40.80 5.34
358 359 3.891586 TTGTCTCGACCTCGTGCGC 62.892 63.158 0.00 0.00 40.80 6.09
374 375 3.993234 GCGCCGCTGACGATCATG 61.993 66.667 0.00 0.00 43.93 3.07
375 376 3.993234 CGCCGCTGACGATCATGC 61.993 66.667 0.00 0.00 43.93 4.06
376 377 3.643978 GCCGCTGACGATCATGCC 61.644 66.667 0.00 0.00 43.93 4.40
377 378 2.969238 CCGCTGACGATCATGCCC 60.969 66.667 0.00 0.00 43.93 5.36
378 379 2.969238 CGCTGACGATCATGCCCC 60.969 66.667 0.00 0.00 43.93 5.80
379 380 2.507944 GCTGACGATCATGCCCCT 59.492 61.111 0.00 0.00 0.00 4.79
380 381 1.890979 GCTGACGATCATGCCCCTG 60.891 63.158 0.00 0.00 0.00 4.45
381 382 1.890979 CTGACGATCATGCCCCTGC 60.891 63.158 0.00 0.00 38.26 4.85
382 383 2.592861 GACGATCATGCCCCTGCC 60.593 66.667 0.00 0.00 36.33 4.85
383 384 3.092511 ACGATCATGCCCCTGCCT 61.093 61.111 0.00 0.00 36.33 4.75
384 385 2.281345 CGATCATGCCCCTGCCTC 60.281 66.667 0.00 0.00 36.33 4.70
385 386 2.281345 GATCATGCCCCTGCCTCG 60.281 66.667 0.00 0.00 36.33 4.63
386 387 3.092511 ATCATGCCCCTGCCTCGT 61.093 61.111 0.00 0.00 36.33 4.18
387 388 3.112205 ATCATGCCCCTGCCTCGTC 62.112 63.158 0.00 0.00 36.33 4.20
393 394 4.457496 CCCTGCCTCGTCGCACAT 62.457 66.667 0.00 0.00 34.35 3.21
394 395 2.434884 CCTGCCTCGTCGCACATT 60.435 61.111 0.00 0.00 34.35 2.71
395 396 2.034879 CCTGCCTCGTCGCACATTT 61.035 57.895 0.00 0.00 34.35 2.32
396 397 1.421485 CTGCCTCGTCGCACATTTC 59.579 57.895 0.00 0.00 34.35 2.17
397 398 1.291184 CTGCCTCGTCGCACATTTCA 61.291 55.000 0.00 0.00 34.35 2.69
398 399 1.291184 TGCCTCGTCGCACATTTCAG 61.291 55.000 0.00 0.00 32.62 3.02
399 400 1.014044 GCCTCGTCGCACATTTCAGA 61.014 55.000 0.00 0.00 0.00 3.27
400 401 1.428448 CCTCGTCGCACATTTCAGAA 58.572 50.000 0.00 0.00 0.00 3.02
401 402 1.126846 CCTCGTCGCACATTTCAGAAC 59.873 52.381 0.00 0.00 0.00 3.01
402 403 0.781787 TCGTCGCACATTTCAGAACG 59.218 50.000 0.00 0.00 0.00 3.95
403 404 0.179250 CGTCGCACATTTCAGAACGG 60.179 55.000 0.00 0.00 0.00 4.44
404 405 1.144969 GTCGCACATTTCAGAACGGA 58.855 50.000 0.00 0.00 0.00 4.69
405 406 1.529438 GTCGCACATTTCAGAACGGAA 59.471 47.619 0.00 0.00 0.00 4.30
406 407 1.529438 TCGCACATTTCAGAACGGAAC 59.471 47.619 0.00 0.00 0.00 3.62
430 431 3.868661 GGGACAAAACGCAACTTCAAAAT 59.131 39.130 0.00 0.00 0.00 1.82
436 437 8.635877 ACAAAACGCAACTTCAAAATGTTATA 57.364 26.923 0.00 0.00 0.00 0.98
455 456 9.976511 ATGTTATATTTTCGATTCGAAGACCTA 57.023 29.630 19.69 8.05 46.43 3.08
487 488 0.883370 GGAATGGAATACGCCGGGTC 60.883 60.000 2.18 0.00 0.00 4.46
500 501 4.436368 GGGTCAGTCTCCGAGGAA 57.564 61.111 0.00 0.00 0.00 3.36
509 510 3.258622 CAGTCTCCGAGGAAATATACCCC 59.741 52.174 0.00 0.00 0.00 4.95
518 519 0.675633 AAATATACCCCGTCCCGTCG 59.324 55.000 0.00 0.00 0.00 5.12
536 537 1.555075 TCGTCCCATCTCCTTTCCTTG 59.445 52.381 0.00 0.00 0.00 3.61
541 542 2.041620 CCCATCTCCTTTCCTTGTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
551 552 1.146774 TCCTTGTTCCATGGGCAAAGA 59.853 47.619 13.02 13.40 30.78 2.52
619 621 2.501128 GCCTCGGTCTGCATGCTA 59.499 61.111 20.33 4.02 0.00 3.49
639 645 5.766150 CTATCTGTAGCTTCTACTGCACT 57.234 43.478 0.00 0.00 0.00 4.40
643 652 1.103803 TAGCTTCTACTGCACTCCCG 58.896 55.000 0.00 0.00 0.00 5.14
676 691 1.410882 CACCTCTTCGATCTTCCCTCC 59.589 57.143 0.00 0.00 0.00 4.30
688 710 2.767496 CCCTCCCCAGCTCTCCTG 60.767 72.222 0.00 0.00 41.41 3.86
735 757 2.032550 CAGCTTTCACTTCACACCACAG 59.967 50.000 0.00 0.00 0.00 3.66
748 770 2.807045 CACAGCTCGACTCACGCC 60.807 66.667 0.00 0.00 42.26 5.68
814 842 1.777878 TCCTTGGCCAAGTTAACCAGA 59.222 47.619 37.09 24.73 36.72 3.86
944 1003 0.584876 GCTAAAGAAACCGTGCGTGT 59.415 50.000 0.00 0.00 0.00 4.49
947 1006 1.654317 AAAGAAACCGTGCGTGTGTA 58.346 45.000 0.00 0.00 0.00 2.90
955 1014 1.366366 GTGCGTGTGTACTCCCTGT 59.634 57.895 0.00 0.00 0.00 4.00
956 1015 0.666577 GTGCGTGTGTACTCCCTGTC 60.667 60.000 0.00 0.00 0.00 3.51
957 1016 1.080025 GCGTGTGTACTCCCTGTCC 60.080 63.158 0.00 0.00 0.00 4.02
958 1017 1.812686 GCGTGTGTACTCCCTGTCCA 61.813 60.000 0.00 0.00 0.00 4.02
959 1018 0.895530 CGTGTGTACTCCCTGTCCAT 59.104 55.000 0.00 0.00 0.00 3.41
960 1019 2.097036 CGTGTGTACTCCCTGTCCATA 58.903 52.381 0.00 0.00 0.00 2.74
961 1020 2.494471 CGTGTGTACTCCCTGTCCATAA 59.506 50.000 0.00 0.00 0.00 1.90
962 1021 3.675228 CGTGTGTACTCCCTGTCCATAAC 60.675 52.174 0.00 0.00 0.00 1.89
989 1051 3.479203 ATCGCCATGGCCGGAGAA 61.479 61.111 30.79 9.85 38.44 2.87
1000 1062 1.038130 GCCGGAGAAGGAGAGTGCTA 61.038 60.000 5.05 0.00 0.00 3.49
1006 1068 2.364002 GAGAAGGAGAGTGCTATGTCCC 59.636 54.545 2.00 0.00 0.00 4.46
1055 1120 1.135373 TCGCGCAGAAACTAAGAGAGG 60.135 52.381 8.75 0.00 0.00 3.69
1062 1127 2.660556 AGAAACTAAGAGAGGAGGGGGA 59.339 50.000 0.00 0.00 0.00 4.81
1287 1377 1.071471 CAACCAGGACTGCTCCGTT 59.929 57.895 0.00 0.00 42.22 4.44
1309 1399 1.079490 TCTGGGAGGTGAGTTCCATCT 59.921 52.381 0.00 0.00 39.39 2.90
1324 1419 1.520494 CATCTTCCATCCATCGCCTG 58.480 55.000 0.00 0.00 0.00 4.85
1325 1420 0.250640 ATCTTCCATCCATCGCCTGC 60.251 55.000 0.00 0.00 0.00 4.85
1326 1421 1.147824 CTTCCATCCATCGCCTGCT 59.852 57.895 0.00 0.00 0.00 4.24
1327 1422 0.465097 CTTCCATCCATCGCCTGCTT 60.465 55.000 0.00 0.00 0.00 3.91
1329 1424 0.749091 TCCATCCATCGCCTGCTTTG 60.749 55.000 0.00 0.00 0.00 2.77
1331 1426 1.077212 ATCCATCGCCTGCTTTGCT 60.077 52.632 0.00 0.00 0.00 3.91
1334 1429 1.428219 CATCGCCTGCTTTGCTCTG 59.572 57.895 0.00 0.00 0.00 3.35
1337 1432 2.256591 CGCCTGCTTTGCTCTGTGT 61.257 57.895 0.00 0.00 0.00 3.72
1341 1436 1.677576 CCTGCTTTGCTCTGTGTTTCA 59.322 47.619 0.00 0.00 0.00 2.69
1348 1443 4.944962 TTGCTCTGTGTTTCATAATCCG 57.055 40.909 0.00 0.00 0.00 4.18
1349 1444 2.677836 TGCTCTGTGTTTCATAATCCGC 59.322 45.455 0.00 0.00 0.00 5.54
1384 1753 0.729816 GCTCTGTTCCACGTCTCGTC 60.730 60.000 0.00 0.00 38.32 4.20
1402 1771 2.095768 CGTCGCAATCATTGGTGACTTT 60.096 45.455 0.00 0.00 41.21 2.66
1405 1774 5.006261 CGTCGCAATCATTGGTGACTTTATA 59.994 40.000 0.00 0.00 41.21 0.98
1439 1809 3.570926 ATTAGCGACGAGACAACTCAA 57.429 42.857 0.00 0.00 42.72 3.02
1442 1812 3.784701 AGCGACGAGACAACTCAATAT 57.215 42.857 0.00 0.00 42.72 1.28
1443 1813 4.111375 AGCGACGAGACAACTCAATATT 57.889 40.909 0.00 0.00 42.72 1.28
1444 1814 4.106197 AGCGACGAGACAACTCAATATTC 58.894 43.478 0.00 0.00 42.72 1.75
1446 1816 4.205385 GCGACGAGACAACTCAATATTCTC 59.795 45.833 0.00 0.00 42.72 2.87
1450 1820 6.096036 ACGAGACAACTCAATATTCTCACTG 58.904 40.000 0.00 0.00 42.72 3.66
1454 1824 7.675062 AGACAACTCAATATTCTCACTGACTT 58.325 34.615 0.00 0.00 0.00 3.01
1455 1825 7.601886 AGACAACTCAATATTCTCACTGACTTG 59.398 37.037 0.00 0.00 0.00 3.16
1456 1826 6.652481 ACAACTCAATATTCTCACTGACTTGG 59.348 38.462 0.00 0.00 0.00 3.61
1457 1827 6.611613 ACTCAATATTCTCACTGACTTGGA 57.388 37.500 0.00 0.00 0.00 3.53
1467 1840 6.190587 TCTCACTGACTTGGAGATTCTCATA 58.809 40.000 15.36 1.24 33.01 2.15
1494 1945 9.936759 AGGAACTTAGTTATGAAGAAGAAGAAG 57.063 33.333 0.00 0.00 27.25 2.85
1495 1946 9.930693 GGAACTTAGTTATGAAGAAGAAGAAGA 57.069 33.333 0.00 0.00 0.00 2.87
1538 1996 3.420893 CTTTGTCCCCTCATTGCTGTAA 58.579 45.455 0.00 0.00 0.00 2.41
1541 1999 1.282157 GTCCCCTCATTGCTGTAACCT 59.718 52.381 0.00 0.00 0.00 3.50
1542 2000 1.281867 TCCCCTCATTGCTGTAACCTG 59.718 52.381 0.00 0.00 0.00 4.00
1543 2001 1.004745 CCCCTCATTGCTGTAACCTGT 59.995 52.381 0.00 0.00 0.00 4.00
1551 2009 5.239306 TCATTGCTGTAACCTGTTGAAGAAG 59.761 40.000 0.00 0.00 0.00 2.85
1596 2115 6.265196 ACCACTGAATAAATCAAACAGCTTCA 59.735 34.615 0.00 0.00 37.67 3.02
1597 2116 7.039504 ACCACTGAATAAATCAAACAGCTTCAT 60.040 33.333 0.00 0.00 37.67 2.57
1598 2117 7.274904 CCACTGAATAAATCAAACAGCTTCATG 59.725 37.037 0.00 0.00 37.67 3.07
1599 2118 7.811236 CACTGAATAAATCAAACAGCTTCATGT 59.189 33.333 0.00 0.00 37.67 3.21
1600 2119 9.013229 ACTGAATAAATCAAACAGCTTCATGTA 57.987 29.630 0.00 0.00 37.67 2.29
1601 2120 9.282247 CTGAATAAATCAAACAGCTTCATGTAC 57.718 33.333 0.00 0.00 37.67 2.90
1604 2123 5.633830 AATCAAACAGCTTCATGTACCTG 57.366 39.130 0.00 0.32 31.70 4.00
1605 2124 4.085357 TCAAACAGCTTCATGTACCTGT 57.915 40.909 8.40 8.40 40.02 4.00
1607 2126 4.067896 CAAACAGCTTCATGTACCTGTCT 58.932 43.478 12.70 0.69 37.55 3.41
1608 2127 3.601443 ACAGCTTCATGTACCTGTCTC 57.399 47.619 8.40 0.00 33.57 3.36
1609 2128 2.899900 ACAGCTTCATGTACCTGTCTCA 59.100 45.455 8.40 0.00 33.57 3.27
1611 2130 3.056250 CAGCTTCATGTACCTGTCTCAGT 60.056 47.826 0.00 0.00 0.00 3.41
1612 2131 3.194542 AGCTTCATGTACCTGTCTCAGTC 59.805 47.826 0.00 0.00 0.00 3.51
1615 2134 2.493675 TCATGTACCTGTCTCAGTCTGC 59.506 50.000 0.00 0.00 0.00 4.26
1630 2164 1.419387 GTCTGCCTGAGATATGGGCTT 59.581 52.381 0.00 0.00 45.45 4.35
1631 2165 1.696336 TCTGCCTGAGATATGGGCTTC 59.304 52.381 0.00 0.00 45.45 3.86
1632 2166 1.419012 CTGCCTGAGATATGGGCTTCA 59.581 52.381 0.00 0.00 45.45 3.02
1633 2167 1.419012 TGCCTGAGATATGGGCTTCAG 59.581 52.381 0.00 0.00 45.45 3.02
1634 2168 1.881498 GCCTGAGATATGGGCTTCAGC 60.881 57.143 0.00 0.00 42.31 4.26
1708 2267 3.065648 TGAGGTGGTTTAGTTCGTTTTGC 59.934 43.478 0.00 0.00 0.00 3.68
1725 2284 5.502606 GTTTTGCACTCTTCAGTACAGTTC 58.497 41.667 0.00 0.00 27.07 3.01
1747 2309 1.864711 GTTGTTGCTGCGACAAGTCTA 59.135 47.619 30.40 11.01 38.27 2.59
1755 2317 3.865745 GCTGCGACAAGTCTACAATACAT 59.134 43.478 0.00 0.00 0.00 2.29
1757 2319 4.430007 TGCGACAAGTCTACAATACATCC 58.570 43.478 0.00 0.00 0.00 3.51
1923 2818 0.178068 TCTATCGGAGCAAAGTGCCC 59.822 55.000 0.00 0.00 46.52 5.36
1974 2922 6.828785 ACTAAATTACTGATGTTGGCCCTTAG 59.171 38.462 0.00 0.00 0.00 2.18
2099 3053 5.074584 CCTCTAGGCGTTTCTCTTTTACT 57.925 43.478 0.00 0.00 0.00 2.24
2100 3054 6.205101 CCTCTAGGCGTTTCTCTTTTACTA 57.795 41.667 0.00 0.00 0.00 1.82
2157 3215 2.793232 GGCATAATACGTGTCTCGGTTC 59.207 50.000 0.00 0.00 44.69 3.62
2199 3272 7.013369 GTGTTAGGTTTCTTGGTTTCTGAATCT 59.987 37.037 0.00 0.00 0.00 2.40
2206 3279 8.352942 GTTTCTTGGTTTCTGAATCTAATGTGT 58.647 33.333 0.00 0.00 0.00 3.72
2207 3280 9.567776 TTTCTTGGTTTCTGAATCTAATGTGTA 57.432 29.630 0.00 0.00 0.00 2.90
2217 3290 3.520290 TCTAATGTGTAGCTTGGGTCG 57.480 47.619 0.00 0.00 0.00 4.79
2230 3316 1.946984 TGGGTCGTTATCCAAGAGGT 58.053 50.000 0.00 0.00 30.85 3.85
2259 3390 0.387239 GATGGCAGAAAACGGTGCAC 60.387 55.000 8.80 8.80 41.75 4.57
2317 4538 3.512033 ACTTCTCAAGCCGTACATCTC 57.488 47.619 0.00 0.00 0.00 2.75
2329 4550 5.834204 AGCCGTACATCTCTAATTCCTAGTT 59.166 40.000 0.00 0.00 0.00 2.24
2330 4551 6.016108 AGCCGTACATCTCTAATTCCTAGTTC 60.016 42.308 0.00 0.00 0.00 3.01
2331 4552 6.238953 GCCGTACATCTCTAATTCCTAGTTCA 60.239 42.308 0.00 0.00 0.00 3.18
2332 4553 7.683704 GCCGTACATCTCTAATTCCTAGTTCAA 60.684 40.741 0.00 0.00 0.00 2.69
2333 4554 8.361139 CCGTACATCTCTAATTCCTAGTTCAAT 58.639 37.037 0.00 0.00 0.00 2.57
2334 4555 9.400638 CGTACATCTCTAATTCCTAGTTCAATC 57.599 37.037 0.00 0.00 0.00 2.67
2337 4558 8.356657 ACATCTCTAATTCCTAGTTCAATCTCG 58.643 37.037 0.00 0.00 0.00 4.04
2338 4559 8.572185 CATCTCTAATTCCTAGTTCAATCTCGA 58.428 37.037 0.00 0.00 0.00 4.04
2339 4560 8.521170 TCTCTAATTCCTAGTTCAATCTCGAA 57.479 34.615 0.00 0.00 0.00 3.71
2340 4561 8.967918 TCTCTAATTCCTAGTTCAATCTCGAAA 58.032 33.333 0.00 0.00 0.00 3.46
2341 4562 9.587772 CTCTAATTCCTAGTTCAATCTCGAAAA 57.412 33.333 0.00 0.00 0.00 2.29
2342 4563 9.938280 TCTAATTCCTAGTTCAATCTCGAAAAA 57.062 29.630 0.00 0.00 0.00 1.94
2422 4672 6.293735 CGAAATGGACACCAAGCTAAAAGTAA 60.294 38.462 0.00 0.00 36.95 2.24
2604 4860 2.125952 CGCTGGCGTCACTCATCA 60.126 61.111 6.83 0.00 34.35 3.07
2693 4952 2.737688 CGTCGACGAAGAGCTCCGA 61.738 63.158 33.35 12.77 43.02 4.55
2745 5004 0.900421 CTCCACTGCTCTGTCCATCA 59.100 55.000 0.00 0.00 0.00 3.07
2929 5222 2.021723 GCATTCTTGGGACGGCCATTA 61.022 52.381 11.00 0.00 35.15 1.90
2996 5290 4.235762 AGTGCAAGGGTCGCGTGT 62.236 61.111 5.77 0.00 0.00 4.49
3178 5472 2.911143 GTCATCCTGGCCACCGAT 59.089 61.111 0.00 2.45 0.00 4.18
3237 5557 1.948834 TGGCACAATCCTATTGCATCG 59.051 47.619 0.00 0.00 38.04 3.84
3355 5675 4.335647 AAGCGCCTGGTCCAGTGG 62.336 66.667 17.85 1.40 0.00 4.00
3487 5807 0.109597 CATTGCCGTGAAGACCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
3571 5899 4.978083 ATGGAAGATCACAGCAAATCAC 57.022 40.909 0.00 0.00 0.00 3.06
3573 5901 4.143543 TGGAAGATCACAGCAAATCACAA 58.856 39.130 0.00 0.00 0.00 3.33
3576 5904 2.095567 AGATCACAGCAAATCACAACGC 60.096 45.455 0.00 0.00 0.00 4.84
3615 5955 3.112709 GAACTGCTGCCGGTCGAC 61.113 66.667 7.13 7.13 0.00 4.20
3629 5969 1.266466 GTCGACGGTCGGAAAATCTC 58.734 55.000 28.07 7.24 40.88 2.75
3695 6036 5.048573 GGCAAATGCATTTTTGTCCTCATTT 60.049 36.000 21.95 0.00 44.36 2.32
3697 6038 6.919115 GCAAATGCATTTTTGTCCTCATTTTT 59.081 30.769 21.95 0.00 41.59 1.94
3698 6039 7.096394 GCAAATGCATTTTTGTCCTCATTTTTG 60.096 33.333 21.95 7.80 41.59 2.44
3706 6047 4.782019 TGTCCTCATTTTTGGTGTATGC 57.218 40.909 0.00 0.00 0.00 3.14
3749 6093 4.380867 GGAAATCGTCACAATCATTGCCTT 60.381 41.667 0.00 0.00 0.00 4.35
3750 6094 3.770263 ATCGTCACAATCATTGCCTTG 57.230 42.857 0.00 0.00 0.00 3.61
3751 6095 2.503331 TCGTCACAATCATTGCCTTGT 58.497 42.857 0.00 0.30 36.04 3.16
3756 6100 5.163723 CGTCACAATCATTGCCTTGTTATCT 60.164 40.000 0.00 0.00 33.45 1.98
3793 6137 0.532862 CAGGGTCATACATCACCGCC 60.533 60.000 0.00 0.00 32.89 6.13
3826 6170 2.837532 ATTTGCGCCCAAAACAATCT 57.162 40.000 4.18 0.00 43.58 2.40
3942 6286 3.507233 TGAGAATTTCAATCTGTGGTGGC 59.493 43.478 0.00 0.00 31.34 5.01
3966 6310 0.731514 GCCGTGAAAGTCATCGTCGA 60.732 55.000 0.00 0.00 0.00 4.20
4085 6429 3.007581 ACCCAGATAGGTGTGGTCC 57.992 57.895 0.00 0.00 39.24 4.46
4087 6431 0.833287 CCCAGATAGGTGTGGTCCAG 59.167 60.000 0.00 0.00 37.07 3.86
4148 6492 2.309613 AGAACACTGCAAGGCAATCAA 58.690 42.857 0.00 0.00 38.41 2.57
4149 6493 2.694628 AGAACACTGCAAGGCAATCAAA 59.305 40.909 0.00 0.00 38.41 2.69
4164 6508 0.464735 TCAAAACCCGTGTGAGGTGG 60.465 55.000 0.00 0.00 37.78 4.61
4186 6530 2.890945 TCGCAATATCAGAAGGATCGGA 59.109 45.455 0.00 0.00 37.44 4.55
4189 6533 4.636249 GCAATATCAGAAGGATCGGACTT 58.364 43.478 0.00 0.00 37.44 3.01
4222 6581 4.202305 CCCCCTTGATGATAGAGACAGTTC 60.202 50.000 0.00 0.00 0.00 3.01
4267 6627 6.981762 AGAACTAGAATGTTCAGAGCAATG 57.018 37.500 0.00 0.00 46.19 2.82
4343 6705 4.583073 AGCAATGATATCATCTTGCTTGCA 59.417 37.500 28.80 0.00 44.03 4.08
4401 6763 9.159254 AGATGTACCAGGAGAACAAATATATCA 57.841 33.333 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.072131 GGACTTTCTCCATGCACTTTGTA 58.928 43.478 0.00 0.00 39.21 2.41
3 4 3.228188 TGGACTTTCTCCATGCACTTT 57.772 42.857 0.00 0.00 44.99 2.66
4 5 2.957402 TGGACTTTCTCCATGCACTT 57.043 45.000 0.00 0.00 44.99 3.16
12 13 2.930826 TGTTGAGGTGGACTTTCTCC 57.069 50.000 0.00 0.00 39.97 3.71
13 14 2.485814 GCATGTTGAGGTGGACTTTCTC 59.514 50.000 0.00 0.00 0.00 2.87
14 15 2.158623 TGCATGTTGAGGTGGACTTTCT 60.159 45.455 0.00 0.00 0.00 2.52
15 16 2.229792 TGCATGTTGAGGTGGACTTTC 58.770 47.619 0.00 0.00 0.00 2.62
16 17 2.363306 TGCATGTTGAGGTGGACTTT 57.637 45.000 0.00 0.00 0.00 2.66
17 18 2.363306 TTGCATGTTGAGGTGGACTT 57.637 45.000 0.00 0.00 0.00 3.01
18 19 2.363306 TTTGCATGTTGAGGTGGACT 57.637 45.000 0.00 0.00 0.00 3.85
19 20 4.737054 CTTATTTGCATGTTGAGGTGGAC 58.263 43.478 0.00 0.00 0.00 4.02
20 21 3.193267 GCTTATTTGCATGTTGAGGTGGA 59.807 43.478 0.00 0.00 0.00 4.02
21 22 3.056678 TGCTTATTTGCATGTTGAGGTGG 60.057 43.478 0.00 0.00 38.12 4.61
22 23 4.177165 TGCTTATTTGCATGTTGAGGTG 57.823 40.909 0.00 0.00 38.12 4.00
32 33 5.811613 GTGGAAATTAGCATGCTTATTTGCA 59.188 36.000 39.23 39.23 44.61 4.08
33 34 6.044682 AGTGGAAATTAGCATGCTTATTTGC 58.955 36.000 36.38 36.38 40.89 3.68
34 35 7.486647 AGAGTGGAAATTAGCATGCTTATTTG 58.513 34.615 36.26 0.00 36.03 2.32
35 36 7.651027 AGAGTGGAAATTAGCATGCTTATTT 57.349 32.000 33.35 33.35 37.79 1.40
36 37 8.930846 ATAGAGTGGAAATTAGCATGCTTATT 57.069 30.769 28.02 25.00 0.00 1.40
37 38 8.930846 AATAGAGTGGAAATTAGCATGCTTAT 57.069 30.769 28.02 20.16 0.00 1.73
39 40 8.790718 CATAATAGAGTGGAAATTAGCATGCTT 58.209 33.333 28.02 7.58 0.00 3.91
40 41 7.094463 GCATAATAGAGTGGAAATTAGCATGCT 60.094 37.037 25.99 25.99 0.00 3.79
41 42 7.025963 GCATAATAGAGTGGAAATTAGCATGC 58.974 38.462 10.51 10.51 0.00 4.06
42 43 8.332996 AGCATAATAGAGTGGAAATTAGCATG 57.667 34.615 0.00 0.00 0.00 4.06
85 86 9.816354 AGTTTCATTAGTTTGTAGTTGCAAAAT 57.184 25.926 0.00 0.00 39.65 1.82
86 87 9.296400 GAGTTTCATTAGTTTGTAGTTGCAAAA 57.704 29.630 0.00 0.00 39.65 2.44
87 88 8.462811 TGAGTTTCATTAGTTTGTAGTTGCAAA 58.537 29.630 0.00 0.00 36.17 3.68
88 89 7.990917 TGAGTTTCATTAGTTTGTAGTTGCAA 58.009 30.769 0.00 0.00 0.00 4.08
89 90 7.282224 ACTGAGTTTCATTAGTTTGTAGTTGCA 59.718 33.333 0.00 0.00 0.00 4.08
90 91 7.639945 ACTGAGTTTCATTAGTTTGTAGTTGC 58.360 34.615 0.00 0.00 0.00 4.17
96 97 9.052759 ACGATTTACTGAGTTTCATTAGTTTGT 57.947 29.630 0.00 0.00 0.00 2.83
100 101 9.871238 ACATACGATTTACTGAGTTTCATTAGT 57.129 29.630 0.00 0.00 0.00 2.24
109 110 9.871238 ACTGAAAATACATACGATTTACTGAGT 57.129 29.630 0.00 0.00 0.00 3.41
163 164 9.559732 TGAGGTTCAATTATATCGAACATGAAT 57.440 29.630 0.00 0.00 40.62 2.57
164 165 8.956533 TGAGGTTCAATTATATCGAACATGAA 57.043 30.769 0.00 0.00 40.62 2.57
196 197 9.579768 GTTGTTGCCAAAATATGTTGTGATATA 57.420 29.630 4.91 0.00 30.94 0.86
197 198 7.275341 CGTTGTTGCCAAAATATGTTGTGATAT 59.725 33.333 4.91 0.00 30.94 1.63
198 199 6.584184 CGTTGTTGCCAAAATATGTTGTGATA 59.416 34.615 4.91 0.00 30.94 2.15
199 200 5.404968 CGTTGTTGCCAAAATATGTTGTGAT 59.595 36.000 4.91 0.00 30.94 3.06
200 201 4.742167 CGTTGTTGCCAAAATATGTTGTGA 59.258 37.500 4.91 0.00 30.94 3.58
201 202 4.505922 ACGTTGTTGCCAAAATATGTTGTG 59.494 37.500 4.91 0.00 30.94 3.33
202 203 4.505922 CACGTTGTTGCCAAAATATGTTGT 59.494 37.500 4.91 0.00 30.94 3.32
203 204 4.505922 ACACGTTGTTGCCAAAATATGTTG 59.494 37.500 0.00 0.00 30.94 3.33
204 205 4.505922 CACACGTTGTTGCCAAAATATGTT 59.494 37.500 0.00 0.00 30.94 2.71
205 206 4.047822 CACACGTTGTTGCCAAAATATGT 58.952 39.130 0.00 0.00 30.94 2.29
206 207 4.294232 TCACACGTTGTTGCCAAAATATG 58.706 39.130 0.00 0.00 30.94 1.78
207 208 4.545610 CTCACACGTTGTTGCCAAAATAT 58.454 39.130 0.00 0.00 30.94 1.28
208 209 3.243234 CCTCACACGTTGTTGCCAAAATA 60.243 43.478 0.00 0.00 30.94 1.40
209 210 2.481104 CCTCACACGTTGTTGCCAAAAT 60.481 45.455 0.00 0.00 30.94 1.82
210 211 1.135257 CCTCACACGTTGTTGCCAAAA 60.135 47.619 0.00 0.00 30.94 2.44
211 212 0.453793 CCTCACACGTTGTTGCCAAA 59.546 50.000 0.00 0.00 30.94 3.28
212 213 0.678366 ACCTCACACGTTGTTGCCAA 60.678 50.000 0.00 0.00 0.00 4.52
213 214 1.078072 ACCTCACACGTTGTTGCCA 60.078 52.632 0.00 0.00 0.00 4.92
214 215 1.355210 CACCTCACACGTTGTTGCC 59.645 57.895 0.00 0.00 0.00 4.52
215 216 1.355210 CCACCTCACACGTTGTTGC 59.645 57.895 0.00 0.00 0.00 4.17
216 217 1.942677 TACCACCTCACACGTTGTTG 58.057 50.000 0.00 0.00 0.00 3.33
217 218 2.103432 TGATACCACCTCACACGTTGTT 59.897 45.455 0.00 0.00 0.00 2.83
218 219 1.689813 TGATACCACCTCACACGTTGT 59.310 47.619 0.00 0.00 0.00 3.32
219 220 2.448926 TGATACCACCTCACACGTTG 57.551 50.000 0.00 0.00 0.00 4.10
220 221 4.161565 ACATATGATACCACCTCACACGTT 59.838 41.667 10.38 0.00 0.00 3.99
221 222 3.704566 ACATATGATACCACCTCACACGT 59.295 43.478 10.38 0.00 0.00 4.49
222 223 4.322080 ACATATGATACCACCTCACACG 57.678 45.455 10.38 0.00 0.00 4.49
223 224 5.527582 GGAAACATATGATACCACCTCACAC 59.472 44.000 10.38 0.00 0.00 3.82
224 225 5.428457 AGGAAACATATGATACCACCTCACA 59.572 40.000 10.38 0.00 0.00 3.58
225 226 5.930135 AGGAAACATATGATACCACCTCAC 58.070 41.667 10.38 0.00 0.00 3.51
226 227 5.905331 AGAGGAAACATATGATACCACCTCA 59.095 40.000 23.02 0.00 42.32 3.86
227 228 6.183361 ACAGAGGAAACATATGATACCACCTC 60.183 42.308 10.38 15.85 40.83 3.85
228 229 5.667626 ACAGAGGAAACATATGATACCACCT 59.332 40.000 10.38 8.69 0.00 4.00
229 230 5.930135 ACAGAGGAAACATATGATACCACC 58.070 41.667 10.38 4.20 0.00 4.61
230 231 8.958119 TTTACAGAGGAAACATATGATACCAC 57.042 34.615 10.38 7.73 0.00 4.16
231 232 8.988060 TCTTTACAGAGGAAACATATGATACCA 58.012 33.333 10.38 0.00 0.00 3.25
232 233 9.832445 TTCTTTACAGAGGAAACATATGATACC 57.168 33.333 10.38 8.94 0.00 2.73
244 245 9.444600 ACGCTTTTATATTTCTTTACAGAGGAA 57.555 29.630 0.00 0.00 0.00 3.36
245 246 9.444600 AACGCTTTTATATTTCTTTACAGAGGA 57.555 29.630 0.00 0.00 0.00 3.71
293 294 9.595823 AGCACTAAAGAAATATAAGAGCGTTTA 57.404 29.630 0.00 0.00 0.00 2.01
294 295 8.391106 CAGCACTAAAGAAATATAAGAGCGTTT 58.609 33.333 0.00 0.00 0.00 3.60
295 296 7.764443 TCAGCACTAAAGAAATATAAGAGCGTT 59.236 33.333 0.00 0.00 0.00 4.84
296 297 7.265673 TCAGCACTAAAGAAATATAAGAGCGT 58.734 34.615 0.00 0.00 0.00 5.07
297 298 7.700322 TCAGCACTAAAGAAATATAAGAGCG 57.300 36.000 0.00 0.00 0.00 5.03
307 308 9.308318 GGTTTGTTTATTTCAGCACTAAAGAAA 57.692 29.630 0.00 0.00 35.92 2.52
308 309 8.691797 AGGTTTGTTTATTTCAGCACTAAAGAA 58.308 29.630 0.00 0.00 0.00 2.52
309 310 8.232913 AGGTTTGTTTATTTCAGCACTAAAGA 57.767 30.769 0.00 0.00 0.00 2.52
312 313 8.736244 GGATAGGTTTGTTTATTTCAGCACTAA 58.264 33.333 0.00 0.00 0.00 2.24
313 314 7.885922 TGGATAGGTTTGTTTATTTCAGCACTA 59.114 33.333 0.00 0.00 0.00 2.74
314 315 6.719370 TGGATAGGTTTGTTTATTTCAGCACT 59.281 34.615 0.00 0.00 0.00 4.40
315 316 6.919721 TGGATAGGTTTGTTTATTTCAGCAC 58.080 36.000 0.00 0.00 0.00 4.40
316 317 7.716799 ATGGATAGGTTTGTTTATTTCAGCA 57.283 32.000 0.00 0.00 0.00 4.41
317 318 8.034804 ACAATGGATAGGTTTGTTTATTTCAGC 58.965 33.333 0.00 0.00 29.60 4.26
318 319 9.573133 GACAATGGATAGGTTTGTTTATTTCAG 57.427 33.333 0.00 0.00 33.92 3.02
319 320 9.308000 AGACAATGGATAGGTTTGTTTATTTCA 57.692 29.630 0.00 0.00 33.92 2.69
320 321 9.788960 GAGACAATGGATAGGTTTGTTTATTTC 57.211 33.333 0.00 0.00 33.92 2.17
321 322 8.458843 CGAGACAATGGATAGGTTTGTTTATTT 58.541 33.333 0.00 0.00 33.92 1.40
322 323 7.827236 TCGAGACAATGGATAGGTTTGTTTATT 59.173 33.333 0.00 0.00 33.92 1.40
323 324 7.280205 GTCGAGACAATGGATAGGTTTGTTTAT 59.720 37.037 0.00 0.00 33.92 1.40
324 325 6.592607 GTCGAGACAATGGATAGGTTTGTTTA 59.407 38.462 0.00 0.00 33.92 2.01
325 326 5.411669 GTCGAGACAATGGATAGGTTTGTTT 59.588 40.000 0.00 0.00 33.92 2.83
326 327 4.935808 GTCGAGACAATGGATAGGTTTGTT 59.064 41.667 0.00 0.00 33.92 2.83
327 328 4.504858 GTCGAGACAATGGATAGGTTTGT 58.495 43.478 0.00 0.00 36.34 2.83
328 329 3.871594 GGTCGAGACAATGGATAGGTTTG 59.128 47.826 5.55 0.00 0.00 2.93
329 330 3.775316 AGGTCGAGACAATGGATAGGTTT 59.225 43.478 5.55 0.00 0.00 3.27
330 331 3.375699 AGGTCGAGACAATGGATAGGTT 58.624 45.455 5.55 0.00 0.00 3.50
331 332 2.959707 GAGGTCGAGACAATGGATAGGT 59.040 50.000 5.55 0.00 0.00 3.08
332 333 2.030717 CGAGGTCGAGACAATGGATAGG 60.031 54.545 5.55 0.00 43.02 2.57
333 334 2.619177 ACGAGGTCGAGACAATGGATAG 59.381 50.000 6.35 0.00 43.02 2.08
334 335 2.357952 CACGAGGTCGAGACAATGGATA 59.642 50.000 6.35 0.00 43.02 2.59
335 336 1.135139 CACGAGGTCGAGACAATGGAT 59.865 52.381 6.35 0.00 43.02 3.41
336 337 0.526211 CACGAGGTCGAGACAATGGA 59.474 55.000 6.35 0.00 43.02 3.41
337 338 1.078759 GCACGAGGTCGAGACAATGG 61.079 60.000 6.35 0.00 43.02 3.16
338 339 1.406219 CGCACGAGGTCGAGACAATG 61.406 60.000 6.35 0.00 43.02 2.82
339 340 1.154016 CGCACGAGGTCGAGACAAT 60.154 57.895 6.35 0.00 43.02 2.71
340 341 2.254350 CGCACGAGGTCGAGACAA 59.746 61.111 6.35 0.00 43.02 3.18
341 342 4.400109 GCGCACGAGGTCGAGACA 62.400 66.667 0.30 0.00 43.02 3.41
357 358 3.993234 CATGATCGTCAGCGGCGC 61.993 66.667 26.86 26.86 38.89 6.53
358 359 3.993234 GCATGATCGTCAGCGGCG 61.993 66.667 0.51 0.51 38.89 6.46
359 360 3.643978 GGCATGATCGTCAGCGGC 61.644 66.667 0.00 0.00 38.89 6.53
360 361 2.969238 GGGCATGATCGTCAGCGG 60.969 66.667 0.00 0.00 38.89 5.52
361 362 2.969238 GGGGCATGATCGTCAGCG 60.969 66.667 0.00 0.00 39.92 5.18
362 363 1.890979 CAGGGGCATGATCGTCAGC 60.891 63.158 0.00 0.00 0.00 4.26
363 364 1.890979 GCAGGGGCATGATCGTCAG 60.891 63.158 0.00 0.00 40.72 3.51
364 365 2.190313 GCAGGGGCATGATCGTCA 59.810 61.111 0.00 0.00 40.72 4.35
365 366 2.592861 GGCAGGGGCATGATCGTC 60.593 66.667 0.00 0.00 43.71 4.20
366 367 3.092511 AGGCAGGGGCATGATCGT 61.093 61.111 0.00 0.00 43.71 3.73
367 368 2.281345 GAGGCAGGGGCATGATCG 60.281 66.667 0.00 0.00 43.71 3.69
368 369 2.281345 CGAGGCAGGGGCATGATC 60.281 66.667 0.00 0.00 43.71 2.92
369 370 3.092511 ACGAGGCAGGGGCATGAT 61.093 61.111 0.00 0.00 43.71 2.45
370 371 3.785859 GACGAGGCAGGGGCATGA 61.786 66.667 0.00 0.00 43.71 3.07
376 377 3.958147 AATGTGCGACGAGGCAGGG 62.958 63.158 0.00 0.00 44.93 4.45
377 378 1.970917 GAAATGTGCGACGAGGCAGG 61.971 60.000 0.00 0.00 44.93 4.85
378 379 1.291184 TGAAATGTGCGACGAGGCAG 61.291 55.000 0.00 0.00 44.93 4.85
379 380 1.291184 CTGAAATGTGCGACGAGGCA 61.291 55.000 0.00 1.17 41.45 4.75
380 381 1.014044 TCTGAAATGTGCGACGAGGC 61.014 55.000 0.00 0.00 0.00 4.70
381 382 1.126846 GTTCTGAAATGTGCGACGAGG 59.873 52.381 0.00 0.00 0.00 4.63
382 383 1.201704 CGTTCTGAAATGTGCGACGAG 60.202 52.381 0.00 0.00 0.00 4.18
383 384 0.781787 CGTTCTGAAATGTGCGACGA 59.218 50.000 0.00 0.00 0.00 4.20
384 385 0.179250 CCGTTCTGAAATGTGCGACG 60.179 55.000 0.00 0.00 0.00 5.12
385 386 1.144969 TCCGTTCTGAAATGTGCGAC 58.855 50.000 0.00 0.00 0.00 5.19
386 387 1.529438 GTTCCGTTCTGAAATGTGCGA 59.471 47.619 0.00 0.00 0.00 5.10
387 388 1.721489 CGTTCCGTTCTGAAATGTGCG 60.721 52.381 0.00 0.00 0.00 5.34
388 389 1.399727 CCGTTCCGTTCTGAAATGTGC 60.400 52.381 0.00 0.00 0.00 4.57
389 390 1.196808 CCCGTTCCGTTCTGAAATGTG 59.803 52.381 0.00 0.00 0.00 3.21
390 391 1.519408 CCCGTTCCGTTCTGAAATGT 58.481 50.000 0.00 0.00 0.00 2.71
391 392 0.802494 CCCCGTTCCGTTCTGAAATG 59.198 55.000 0.00 0.00 0.00 2.32
392 393 0.688487 TCCCCGTTCCGTTCTGAAAT 59.312 50.000 0.00 0.00 0.00 2.17
393 394 0.249996 GTCCCCGTTCCGTTCTGAAA 60.250 55.000 0.00 0.00 0.00 2.69
394 395 1.368579 GTCCCCGTTCCGTTCTGAA 59.631 57.895 0.00 0.00 0.00 3.02
395 396 1.401318 TTGTCCCCGTTCCGTTCTGA 61.401 55.000 0.00 0.00 0.00 3.27
396 397 0.533308 TTTGTCCCCGTTCCGTTCTG 60.533 55.000 0.00 0.00 0.00 3.02
397 398 0.180878 TTTTGTCCCCGTTCCGTTCT 59.819 50.000 0.00 0.00 0.00 3.01
398 399 0.308684 GTTTTGTCCCCGTTCCGTTC 59.691 55.000 0.00 0.00 0.00 3.95
399 400 1.438562 CGTTTTGTCCCCGTTCCGTT 61.439 55.000 0.00 0.00 0.00 4.44
400 401 1.888638 CGTTTTGTCCCCGTTCCGT 60.889 57.895 0.00 0.00 0.00 4.69
401 402 2.940561 CGTTTTGTCCCCGTTCCG 59.059 61.111 0.00 0.00 0.00 4.30
402 403 1.726533 TTGCGTTTTGTCCCCGTTCC 61.727 55.000 0.00 0.00 0.00 3.62
403 404 0.593008 GTTGCGTTTTGTCCCCGTTC 60.593 55.000 0.00 0.00 0.00 3.95
404 405 1.033202 AGTTGCGTTTTGTCCCCGTT 61.033 50.000 0.00 0.00 0.00 4.44
405 406 1.033202 AAGTTGCGTTTTGTCCCCGT 61.033 50.000 0.00 0.00 0.00 5.28
406 407 0.317519 GAAGTTGCGTTTTGTCCCCG 60.318 55.000 0.00 0.00 0.00 5.73
407 408 0.741915 TGAAGTTGCGTTTTGTCCCC 59.258 50.000 0.00 0.00 0.00 4.81
408 409 2.570442 TTGAAGTTGCGTTTTGTCCC 57.430 45.000 0.00 0.00 0.00 4.46
409 410 4.328712 ACATTTTGAAGTTGCGTTTTGTCC 59.671 37.500 0.00 0.00 0.00 4.02
430 431 9.806203 TTAGGTCTTCGAATCGAAAATATAACA 57.194 29.630 18.99 0.00 45.23 2.41
436 437 7.668525 ACTTTTAGGTCTTCGAATCGAAAAT 57.331 32.000 18.99 7.82 45.23 1.82
445 446 4.505191 CGTCAACAACTTTTAGGTCTTCGA 59.495 41.667 0.00 0.00 0.00 3.71
446 447 4.318546 CCGTCAACAACTTTTAGGTCTTCG 60.319 45.833 0.00 0.00 0.00 3.79
455 456 4.993029 TTCCATTCCGTCAACAACTTTT 57.007 36.364 0.00 0.00 0.00 2.27
487 488 3.258622 GGGGTATATTTCCTCGGAGACTG 59.741 52.174 6.58 0.00 0.00 3.51
518 519 3.348119 GAACAAGGAAAGGAGATGGGAC 58.652 50.000 0.00 0.00 0.00 4.46
536 537 0.247460 GCCTTCTTTGCCCATGGAAC 59.753 55.000 15.22 5.44 0.00 3.62
541 542 2.105766 GAAGATGCCTTCTTTGCCCAT 58.894 47.619 1.04 0.00 44.88 4.00
551 552 0.877071 CAGCAACACGAAGATGCCTT 59.123 50.000 10.15 0.00 40.93 4.35
619 621 3.383185 GGAGTGCAGTAGAAGCTACAGAT 59.617 47.826 7.29 0.00 0.00 2.90
639 645 2.768344 GGGATGAAGAGCCCGGGA 60.768 66.667 29.31 0.71 38.31 5.14
676 691 1.573108 TAAAGGACAGGAGAGCTGGG 58.427 55.000 0.00 0.00 0.00 4.45
688 710 3.090037 GGGAGGGAGCTTTTTAAAGGAC 58.910 50.000 4.54 0.00 36.53 3.85
735 757 1.515304 GAAGAGGCGTGAGTCGAGC 60.515 63.158 1.46 1.46 43.49 5.03
748 770 1.743252 GACTGGCGCCAAGGAAGAG 60.743 63.158 32.09 19.23 0.00 2.85
922 981 1.263217 ACGCACGGTTTCTTTAGCTTG 59.737 47.619 0.00 0.00 0.00 4.01
947 1006 2.642171 TGGAGTTATGGACAGGGAGT 57.358 50.000 0.00 0.00 0.00 3.85
955 1014 3.197766 GGCGATGGATATGGAGTTATGGA 59.802 47.826 0.00 0.00 0.00 3.41
956 1015 3.055167 TGGCGATGGATATGGAGTTATGG 60.055 47.826 0.00 0.00 0.00 2.74
957 1016 4.206477 TGGCGATGGATATGGAGTTATG 57.794 45.455 0.00 0.00 0.00 1.90
958 1017 4.774124 CATGGCGATGGATATGGAGTTAT 58.226 43.478 0.00 0.00 0.00 1.89
959 1018 4.206477 CATGGCGATGGATATGGAGTTA 57.794 45.455 0.00 0.00 0.00 2.24
960 1019 3.063510 CATGGCGATGGATATGGAGTT 57.936 47.619 0.00 0.00 0.00 3.01
961 1020 2.775911 CATGGCGATGGATATGGAGT 57.224 50.000 0.00 0.00 0.00 3.85
989 1051 1.786937 CAGGGACATAGCACTCTCCT 58.213 55.000 0.00 0.00 0.00 3.69
1037 1102 2.535331 CTCCTCTCTTAGTTTCTGCGC 58.465 52.381 0.00 0.00 0.00 6.09
1039 1104 2.169561 CCCCTCCTCTCTTAGTTTCTGC 59.830 54.545 0.00 0.00 0.00 4.26
1055 1120 3.617775 CGAAAGAGTTTCTTCTCCCCCTC 60.618 52.174 0.00 0.00 35.27 4.30
1062 1127 4.152284 ACAACCCGAAAGAGTTTCTTCT 57.848 40.909 0.00 0.00 35.27 2.85
1287 1377 0.105194 TGGAACTCACCTCCCAGACA 60.105 55.000 0.00 0.00 31.32 3.41
1309 1399 0.034186 AAAGCAGGCGATGGATGGAA 60.034 50.000 0.00 0.00 0.00 3.53
1324 1419 5.098211 GGATTATGAAACACAGAGCAAAGC 58.902 41.667 0.00 0.00 0.00 3.51
1325 1420 5.327091 CGGATTATGAAACACAGAGCAAAG 58.673 41.667 0.00 0.00 0.00 2.77
1326 1421 4.379394 GCGGATTATGAAACACAGAGCAAA 60.379 41.667 0.00 0.00 0.00 3.68
1327 1422 3.126858 GCGGATTATGAAACACAGAGCAA 59.873 43.478 0.00 0.00 0.00 3.91
1329 1424 2.939103 AGCGGATTATGAAACACAGAGC 59.061 45.455 0.00 0.00 0.00 4.09
1331 1426 3.270027 CCAGCGGATTATGAAACACAGA 58.730 45.455 0.00 0.00 0.00 3.41
1334 1429 2.017049 AGCCAGCGGATTATGAAACAC 58.983 47.619 0.00 0.00 0.00 3.32
1337 1432 1.024271 GCAGCCAGCGGATTATGAAA 58.976 50.000 0.00 0.00 0.00 2.69
1348 1443 4.806571 CATCAACATGCAGCCAGC 57.193 55.556 0.00 0.00 45.96 4.85
1384 1753 8.559536 ACTATTATAAAGTCACCAATGATTGCG 58.440 33.333 0.00 0.00 37.14 4.85
1402 1771 8.323854 CGTCGCTAATTCGCTACTACTATTATA 58.676 37.037 5.31 0.00 0.00 0.98
1405 1774 5.178252 TCGTCGCTAATTCGCTACTACTATT 59.822 40.000 5.31 0.00 0.00 1.73
1439 1809 7.344093 TGAGAATCTCCAAGTCAGTGAGAATAT 59.656 37.037 7.91 0.00 38.53 1.28
1442 1812 4.835056 TGAGAATCTCCAAGTCAGTGAGAA 59.165 41.667 7.91 0.00 38.53 2.87
1443 1813 4.411013 TGAGAATCTCCAAGTCAGTGAGA 58.589 43.478 7.91 0.00 39.31 3.27
1444 1814 4.797800 TGAGAATCTCCAAGTCAGTGAG 57.202 45.455 7.91 0.00 34.92 3.51
1446 1816 6.047870 CCTTATGAGAATCTCCAAGTCAGTG 58.952 44.000 7.91 0.00 34.92 3.66
1450 1820 6.883744 AGTTCCTTATGAGAATCTCCAAGTC 58.116 40.000 7.91 4.86 34.92 3.01
1454 1824 7.979786 ACTAAGTTCCTTATGAGAATCTCCA 57.020 36.000 7.91 0.00 34.92 3.86
1518 1976 3.153919 GTTACAGCAATGAGGGGACAAA 58.846 45.455 0.00 0.00 0.00 2.83
1519 1977 2.554344 GGTTACAGCAATGAGGGGACAA 60.554 50.000 0.00 0.00 0.00 3.18
1538 1996 6.732896 TTCTAGACTTCTTCTTCAACAGGT 57.267 37.500 0.00 0.00 35.55 4.00
1551 2009 7.757624 CAGTGGTCAGAAACTATTCTAGACTTC 59.242 40.741 0.00 0.00 44.11 3.01
1596 2115 1.827969 GGCAGACTGAGACAGGTACAT 59.172 52.381 6.65 0.00 35.51 2.29
1597 2116 1.203063 AGGCAGACTGAGACAGGTACA 60.203 52.381 6.65 0.00 35.51 2.90
1598 2117 1.551452 AGGCAGACTGAGACAGGTAC 58.449 55.000 6.65 0.00 35.51 3.34
1600 2119 4.963944 AGGCAGACTGAGACAGGT 57.036 55.556 6.65 0.00 35.51 4.00
1609 2128 1.055040 GCCCATATCTCAGGCAGACT 58.945 55.000 0.00 0.00 46.34 3.24
1615 2134 1.698532 AGCTGAAGCCCATATCTCAGG 59.301 52.381 0.00 0.00 43.38 3.86
1630 2164 1.380515 CGAAGGGGGAGAGAGCTGA 60.381 63.158 0.00 0.00 0.00 4.26
1631 2165 1.261238 AACGAAGGGGGAGAGAGCTG 61.261 60.000 0.00 0.00 0.00 4.24
1632 2166 0.545548 AAACGAAGGGGGAGAGAGCT 60.546 55.000 0.00 0.00 0.00 4.09
1633 2167 0.391793 CAAACGAAGGGGGAGAGAGC 60.392 60.000 0.00 0.00 0.00 4.09
1634 2168 0.391793 GCAAACGAAGGGGGAGAGAG 60.392 60.000 0.00 0.00 0.00 3.20
1708 2267 5.352284 ACAACAGAACTGTACTGAAGAGTG 58.648 41.667 7.90 2.59 44.13 3.51
1725 2284 0.378257 ACTTGTCGCAGCAACAACAG 59.622 50.000 0.00 0.00 33.30 3.16
1755 2317 4.395231 CACAACGACATACTGAGTCTAGGA 59.605 45.833 0.00 0.00 33.89 2.94
1757 2319 4.099120 GCACAACGACATACTGAGTCTAG 58.901 47.826 0.00 0.00 33.89 2.43
1911 2806 1.856265 CTCGGTTGGGCACTTTGCTC 61.856 60.000 0.00 0.00 46.11 4.26
1923 2818 2.093973 AGACTACCTCATTGCTCGGTTG 60.094 50.000 0.00 0.00 32.36 3.77
2157 3215 4.213482 CCTAACACCTTTTTCTCTCCAACG 59.787 45.833 0.00 0.00 0.00 4.10
2199 3272 3.688694 AACGACCCAAGCTACACATTA 57.311 42.857 0.00 0.00 0.00 1.90
2217 3290 4.508124 CGCAGTCATAACCTCTTGGATAAC 59.492 45.833 0.00 0.00 37.04 1.89
2259 3390 3.411446 TCATGCAACCTGTCTTTGGTAG 58.589 45.455 0.00 0.00 36.69 3.18
2299 4059 5.854010 ATTAGAGATGTACGGCTTGAGAA 57.146 39.130 0.00 0.00 0.00 2.87
2300 4060 5.221263 GGAATTAGAGATGTACGGCTTGAGA 60.221 44.000 0.00 0.00 0.00 3.27
2301 4061 4.985409 GGAATTAGAGATGTACGGCTTGAG 59.015 45.833 0.00 0.00 0.00 3.02
2302 4062 4.649674 AGGAATTAGAGATGTACGGCTTGA 59.350 41.667 0.00 0.00 0.00 3.02
2303 4063 4.950050 AGGAATTAGAGATGTACGGCTTG 58.050 43.478 0.00 0.00 0.00 4.01
2305 4065 5.386924 ACTAGGAATTAGAGATGTACGGCT 58.613 41.667 0.00 0.00 33.39 5.52
2307 4067 7.273320 TGAACTAGGAATTAGAGATGTACGG 57.727 40.000 0.00 0.00 33.39 4.02
2376 4597 4.580995 TCGGTTTGGCTATTTTGAACTTGA 59.419 37.500 0.00 0.00 0.00 3.02
2422 4672 4.600062 AGGAGAAAACCACAGAACAAGTT 58.400 39.130 0.00 0.00 0.00 2.66
2597 4853 0.888619 TCTTCTCGCCGTTGATGAGT 59.111 50.000 0.00 0.00 0.00 3.41
2604 4860 0.389166 CAGAGCTTCTTCTCGCCGTT 60.389 55.000 0.00 0.00 38.12 4.44
2745 5004 2.355108 CCATCGTGTCACCCTTCTTGAT 60.355 50.000 0.00 0.00 0.00 2.57
2899 5158 0.592637 CCAAGAATGCTGAACGTGCA 59.407 50.000 0.00 0.00 44.95 4.57
2904 5163 0.804989 CCGTCCCAAGAATGCTGAAC 59.195 55.000 0.00 0.00 0.00 3.18
2996 5290 2.747822 GCTCGTCCTCGTCGCAGTA 61.748 63.158 0.00 0.00 38.33 2.74
3178 5472 2.438795 GGTTGGCTGCTTACCCCA 59.561 61.111 11.11 0.00 0.00 4.96
3230 5550 0.246360 ACGACCATCAGACGATGCAA 59.754 50.000 0.00 0.00 46.59 4.08
3237 5557 3.181520 CCATTTTTCGACGACCATCAGAC 60.182 47.826 0.00 0.00 0.00 3.51
3319 5639 4.214327 GCCGCCTTCTCCCTCTCG 62.214 72.222 0.00 0.00 0.00 4.04
3487 5807 0.602905 AGGACGGGCGTTTTCTCTTG 60.603 55.000 0.00 0.00 0.00 3.02
3554 5882 3.610114 GCGTTGTGATTTGCTGTGATCTT 60.610 43.478 0.00 0.00 0.00 2.40
3612 5952 2.662150 GGAGATTTTCCGACCGTCG 58.338 57.895 14.15 14.15 40.07 5.12
3629 5969 1.134946 GATTCTCGTGCATTTTGGGGG 59.865 52.381 0.00 0.00 0.00 5.40
3695 6036 0.981183 AGACGGAGGCATACACCAAA 59.019 50.000 0.00 0.00 0.00 3.28
3697 6038 0.324368 AGAGACGGAGGCATACACCA 60.324 55.000 0.00 0.00 0.00 4.17
3698 6039 0.103208 CAGAGACGGAGGCATACACC 59.897 60.000 0.00 0.00 0.00 4.16
3732 6073 2.995466 ACAAGGCAATGATTGTGACG 57.005 45.000 7.05 0.00 38.19 4.35
3749 6093 7.659390 TGTTGTGATTGATGTACACAGATAACA 59.341 33.333 0.00 0.00 43.62 2.41
3750 6094 8.028540 TGTTGTGATTGATGTACACAGATAAC 57.971 34.615 0.00 0.00 43.62 1.89
3751 6095 7.334171 CCTGTTGTGATTGATGTACACAGATAA 59.666 37.037 0.00 0.00 43.62 1.75
3756 6100 4.071423 CCCTGTTGTGATTGATGTACACA 58.929 43.478 0.00 0.00 41.70 3.72
3793 6137 1.199624 GCAAATTATCGGCGCCAAAG 58.800 50.000 28.98 10.81 0.00 2.77
3826 6170 7.440556 GCTTCAGTGCAGAATATCTAAGATTGA 59.559 37.037 0.00 0.00 0.00 2.57
3898 6242 0.317160 TGTGTGACTGCTTCCTACCG 59.683 55.000 0.00 0.00 0.00 4.02
3942 6286 0.798776 GATGACTTTCACGGCCACAG 59.201 55.000 2.24 0.00 0.00 3.66
3954 6298 1.202154 CGGCTAACTCGACGATGACTT 60.202 52.381 0.00 0.00 37.71 3.01
4148 6492 1.147600 GACCACCTCACACGGGTTT 59.852 57.895 0.00 0.00 34.44 3.27
4149 6493 2.826702 GACCACCTCACACGGGTT 59.173 61.111 0.00 0.00 34.44 4.11
4164 6508 2.989840 CCGATCCTTCTGATATTGCGAC 59.010 50.000 0.00 0.00 32.41 5.19
4203 6547 8.093659 TCTATCGAACTGTCTCTATCATCAAG 57.906 38.462 0.00 0.00 0.00 3.02
4204 6548 8.451908 TTCTATCGAACTGTCTCTATCATCAA 57.548 34.615 0.00 0.00 0.00 2.57
4211 6570 5.971792 CGCATTTTCTATCGAACTGTCTCTA 59.028 40.000 0.00 0.00 0.00 2.43
4222 6581 4.850859 TGTACCAACGCATTTTCTATCG 57.149 40.909 0.00 0.00 0.00 2.92
4232 6591 4.325028 TTCTAGTTCTTGTACCAACGCA 57.675 40.909 0.00 0.00 0.00 5.24
4401 6763 5.713389 TCCACCGAGACACCGATTATTATAT 59.287 40.000 0.00 0.00 0.00 0.86
4416 6778 1.070134 CACCTTTGAACTCCACCGAGA 59.930 52.381 0.00 0.00 38.52 4.04



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.