Multiple sequence alignment - TraesCS1A01G228000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G228000 | chr1A | 100.000 | 4449 | 0 | 0 | 1 | 4449 | 399233361 | 399228913 | 0.000000e+00 | 8216.0 |
1 | TraesCS1A01G228000 | chr1A | 88.943 | 1022 | 93 | 11 | 2441 | 3456 | 399244176 | 399243169 | 0.000000e+00 | 1243.0 |
2 | TraesCS1A01G228000 | chr1A | 83.721 | 989 | 134 | 21 | 2452 | 3431 | 399472646 | 399471676 | 0.000000e+00 | 909.0 |
3 | TraesCS1A01G228000 | chr1A | 78.954 | 746 | 65 | 50 | 673 | 1379 | 399246346 | 399245654 | 1.480000e-114 | 424.0 |
4 | TraesCS1A01G228000 | chr1A | 80.984 | 447 | 50 | 14 | 3111 | 3529 | 399423745 | 399423306 | 5.550000e-84 | 322.0 |
5 | TraesCS1A01G228000 | chr1A | 88.496 | 226 | 20 | 1 | 1090 | 1309 | 399473951 | 399473726 | 7.340000e-68 | 268.0 |
6 | TraesCS1A01G228000 | chr1A | 85.600 | 125 | 16 | 2 | 1960 | 2083 | 399244983 | 399244860 | 3.610000e-26 | 130.0 |
7 | TraesCS1A01G228000 | chr1A | 91.304 | 69 | 6 | 0 | 247 | 315 | 551582337 | 551582269 | 1.320000e-15 | 95.3 |
8 | TraesCS1A01G228000 | chr1A | 89.855 | 69 | 7 | 0 | 247 | 315 | 95850282 | 95850350 | 6.130000e-14 | 89.8 |
9 | TraesCS1A01G228000 | chr1A | 89.855 | 69 | 7 | 0 | 247 | 315 | 320485668 | 320485600 | 6.130000e-14 | 89.8 |
10 | TraesCS1A01G228000 | chr1D | 91.989 | 2147 | 116 | 25 | 2346 | 4449 | 317997247 | 317995114 | 0.000000e+00 | 2961.0 |
11 | TraesCS1A01G228000 | chr1D | 89.362 | 1128 | 94 | 17 | 2441 | 3551 | 318102332 | 318101214 | 0.000000e+00 | 1395.0 |
12 | TraesCS1A01G228000 | chr1D | 83.499 | 1006 | 152 | 14 | 2432 | 3431 | 318162505 | 318161508 | 0.000000e+00 | 926.0 |
13 | TraesCS1A01G228000 | chr1D | 82.777 | 749 | 60 | 33 | 603 | 1322 | 317999532 | 317998824 | 4.920000e-169 | 604.0 |
14 | TraesCS1A01G228000 | chr1D | 91.167 | 317 | 12 | 10 | 1949 | 2259 | 317998095 | 317997789 | 2.480000e-112 | 416.0 |
15 | TraesCS1A01G228000 | chr1D | 89.841 | 315 | 11 | 11 | 1069 | 1379 | 318103719 | 318103422 | 6.980000e-103 | 385.0 |
16 | TraesCS1A01G228000 | chr1D | 80.769 | 442 | 54 | 16 | 3112 | 3529 | 318124803 | 318124369 | 2.580000e-82 | 316.0 |
17 | TraesCS1A01G228000 | chr1D | 87.983 | 233 | 24 | 2 | 8 | 240 | 318083607 | 318083379 | 5.670000e-69 | 272.0 |
18 | TraesCS1A01G228000 | chr1D | 88.372 | 215 | 19 | 2 | 1096 | 1304 | 318163902 | 318163688 | 2.050000e-63 | 254.0 |
19 | TraesCS1A01G228000 | chr1D | 91.860 | 86 | 4 | 2 | 1353 | 1438 | 317998825 | 317998743 | 2.810000e-22 | 117.0 |
20 | TraesCS1A01G228000 | chr1B | 90.423 | 2130 | 113 | 30 | 2381 | 4449 | 429766480 | 429764381 | 0.000000e+00 | 2719.0 |
21 | TraesCS1A01G228000 | chr1B | 87.623 | 1519 | 86 | 54 | 411 | 1881 | 429768761 | 429767297 | 0.000000e+00 | 1670.0 |
22 | TraesCS1A01G228000 | chr1B | 89.048 | 1114 | 88 | 14 | 2444 | 3545 | 429900323 | 429899232 | 0.000000e+00 | 1351.0 |
23 | TraesCS1A01G228000 | chr1B | 84.906 | 530 | 65 | 10 | 2911 | 3431 | 429977020 | 429976497 | 5.100000e-144 | 521.0 |
24 | TraesCS1A01G228000 | chr1B | 79.621 | 844 | 71 | 43 | 593 | 1379 | 429902448 | 429901649 | 3.070000e-141 | 512.0 |
25 | TraesCS1A01G228000 | chr1B | 92.000 | 275 | 13 | 7 | 1 | 275 | 429808505 | 429808240 | 1.170000e-100 | 377.0 |
26 | TraesCS1A01G228000 | chr1B | 91.463 | 246 | 10 | 7 | 1867 | 2106 | 429767278 | 429767038 | 1.190000e-85 | 327.0 |
27 | TraesCS1A01G228000 | chr1B | 88.889 | 216 | 18 | 2 | 1095 | 1304 | 429978917 | 429978702 | 1.230000e-65 | 261.0 |
28 | TraesCS1A01G228000 | chr1B | 78.132 | 439 | 55 | 19 | 3111 | 3522 | 429917678 | 429917254 | 1.600000e-59 | 241.0 |
29 | TraesCS1A01G228000 | chr1B | 88.000 | 125 | 13 | 2 | 1960 | 2083 | 429900752 | 429900629 | 3.590000e-31 | 147.0 |
30 | TraesCS1A01G228000 | chr1B | 85.981 | 107 | 14 | 1 | 314 | 419 | 429775024 | 429774918 | 3.640000e-21 | 113.0 |
31 | TraesCS1A01G228000 | chr6A | 83.709 | 755 | 113 | 8 | 2441 | 3188 | 612595245 | 612595996 | 0.000000e+00 | 704.0 |
32 | TraesCS1A01G228000 | chr2D | 87.500 | 216 | 21 | 2 | 1095 | 1304 | 79517105 | 79516890 | 1.240000e-60 | 244.0 |
33 | TraesCS1A01G228000 | chr3B | 92.135 | 89 | 5 | 2 | 1860 | 1948 | 666611621 | 666611535 | 1.680000e-24 | 124.0 |
34 | TraesCS1A01G228000 | chr2B | 91.549 | 71 | 6 | 0 | 245 | 315 | 774662039 | 774661969 | 1.020000e-16 | 99.0 |
35 | TraesCS1A01G228000 | chr3A | 91.304 | 69 | 6 | 0 | 247 | 315 | 7457494 | 7457426 | 1.320000e-15 | 95.3 |
36 | TraesCS1A01G228000 | chr3A | 91.304 | 69 | 6 | 0 | 247 | 315 | 7464039 | 7463971 | 1.320000e-15 | 95.3 |
37 | TraesCS1A01G228000 | chr4B | 91.045 | 67 | 6 | 0 | 249 | 315 | 460189783 | 460189849 | 1.700000e-14 | 91.6 |
38 | TraesCS1A01G228000 | chr2A | 89.855 | 69 | 7 | 0 | 247 | 315 | 3529072 | 3529140 | 6.130000e-14 | 89.8 |
39 | TraesCS1A01G228000 | chr2A | 89.855 | 69 | 7 | 0 | 247 | 315 | 676345921 | 676345989 | 6.130000e-14 | 89.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G228000 | chr1A | 399228913 | 399233361 | 4448 | True | 8216.0 | 8216 | 100.000000 | 1 | 4449 | 1 | chr1A.!!$R2 | 4448 |
1 | TraesCS1A01G228000 | chr1A | 399243169 | 399246346 | 3177 | True | 599.0 | 1243 | 84.499000 | 673 | 3456 | 3 | chr1A.!!$R5 | 2783 |
2 | TraesCS1A01G228000 | chr1A | 399471676 | 399473951 | 2275 | True | 588.5 | 909 | 86.108500 | 1090 | 3431 | 2 | chr1A.!!$R6 | 2341 |
3 | TraesCS1A01G228000 | chr1D | 317995114 | 317999532 | 4418 | True | 1024.5 | 2961 | 89.448250 | 603 | 4449 | 4 | chr1D.!!$R3 | 3846 |
4 | TraesCS1A01G228000 | chr1D | 318101214 | 318103719 | 2505 | True | 890.0 | 1395 | 89.601500 | 1069 | 3551 | 2 | chr1D.!!$R4 | 2482 |
5 | TraesCS1A01G228000 | chr1D | 318161508 | 318163902 | 2394 | True | 590.0 | 926 | 85.935500 | 1096 | 3431 | 2 | chr1D.!!$R5 | 2335 |
6 | TraesCS1A01G228000 | chr1B | 429764381 | 429768761 | 4380 | True | 1572.0 | 2719 | 89.836333 | 411 | 4449 | 3 | chr1B.!!$R4 | 4038 |
7 | TraesCS1A01G228000 | chr1B | 429899232 | 429902448 | 3216 | True | 670.0 | 1351 | 85.556333 | 593 | 3545 | 3 | chr1B.!!$R5 | 2952 |
8 | TraesCS1A01G228000 | chr1B | 429976497 | 429978917 | 2420 | True | 391.0 | 521 | 86.897500 | 1095 | 3431 | 2 | chr1B.!!$R6 | 2336 |
9 | TraesCS1A01G228000 | chr6A | 612595245 | 612595996 | 751 | False | 704.0 | 704 | 83.709000 | 2441 | 3188 | 1 | chr6A.!!$F1 | 747 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
403 | 404 | 0.179250 | CGTCGCACATTTCAGAACGG | 60.179 | 55.0 | 0.0 | 0.0 | 0.00 | 4.44 | F |
944 | 1003 | 0.584876 | GCTAAAGAAACCGTGCGTGT | 59.415 | 50.0 | 0.0 | 0.0 | 0.00 | 4.49 | F |
1923 | 2818 | 0.178068 | TCTATCGGAGCAAAGTGCCC | 59.822 | 55.0 | 0.0 | 0.0 | 46.52 | 5.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1309 | 1399 | 0.034186 | AAAGCAGGCGATGGATGGAA | 60.034 | 50.0 | 0.0 | 0.0 | 0.00 | 3.53 | R |
2604 | 4860 | 0.389166 | CAGAGCTTCTTCTCGCCGTT | 60.389 | 55.0 | 0.0 | 0.0 | 38.12 | 4.44 | R |
3698 | 6039 | 0.103208 | CAGAGACGGAGGCATACACC | 59.897 | 60.0 | 0.0 | 0.0 | 0.00 | 4.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 2.930826 | GGAGAAAGTCCACCTCAACA | 57.069 | 50.000 | 0.00 | 0.00 | 46.10 | 3.33 |
32 | 33 | 3.425162 | GGAGAAAGTCCACCTCAACAT | 57.575 | 47.619 | 0.00 | 0.00 | 46.10 | 2.71 |
33 | 34 | 3.077359 | GGAGAAAGTCCACCTCAACATG | 58.923 | 50.000 | 0.00 | 0.00 | 46.10 | 3.21 |
34 | 35 | 2.485814 | GAGAAAGTCCACCTCAACATGC | 59.514 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
35 | 36 | 2.158623 | AGAAAGTCCACCTCAACATGCA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
36 | 37 | 2.363306 | AAGTCCACCTCAACATGCAA | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 4.08 |
37 | 38 | 2.363306 | AGTCCACCTCAACATGCAAA | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 3.68 |
38 | 39 | 2.880443 | AGTCCACCTCAACATGCAAAT | 58.120 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
39 | 40 | 4.032960 | AGTCCACCTCAACATGCAAATA | 57.967 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
40 | 41 | 4.406456 | AGTCCACCTCAACATGCAAATAA | 58.594 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
41 | 42 | 4.460382 | AGTCCACCTCAACATGCAAATAAG | 59.540 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
42 | 43 | 3.193267 | TCCACCTCAACATGCAAATAAGC | 59.807 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
55 | 56 | 5.975282 | TGCAAATAAGCATGCTAATTTCCA | 58.025 | 33.333 | 23.00 | 11.87 | 42.97 | 3.53 |
56 | 57 | 5.811613 | TGCAAATAAGCATGCTAATTTCCAC | 59.188 | 36.000 | 23.00 | 7.55 | 42.97 | 4.02 |
57 | 58 | 6.044682 | GCAAATAAGCATGCTAATTTCCACT | 58.955 | 36.000 | 23.00 | 4.09 | 39.46 | 4.00 |
58 | 59 | 6.199719 | GCAAATAAGCATGCTAATTTCCACTC | 59.800 | 38.462 | 23.00 | 0.02 | 39.46 | 3.51 |
59 | 60 | 7.486647 | CAAATAAGCATGCTAATTTCCACTCT | 58.513 | 34.615 | 23.00 | 2.67 | 0.00 | 3.24 |
60 | 61 | 8.623903 | CAAATAAGCATGCTAATTTCCACTCTA | 58.376 | 33.333 | 23.00 | 5.15 | 0.00 | 2.43 |
61 | 62 | 8.930846 | AATAAGCATGCTAATTTCCACTCTAT | 57.069 | 30.769 | 23.00 | 7.46 | 0.00 | 1.98 |
62 | 63 | 8.930846 | ATAAGCATGCTAATTTCCACTCTATT | 57.069 | 30.769 | 23.00 | 1.22 | 0.00 | 1.73 |
64 | 65 | 8.930846 | AAGCATGCTAATTTCCACTCTATTAT | 57.069 | 30.769 | 23.00 | 0.00 | 0.00 | 1.28 |
65 | 66 | 8.332996 | AGCATGCTAATTTCCACTCTATTATG | 57.667 | 34.615 | 21.21 | 0.00 | 0.00 | 1.90 |
66 | 67 | 7.025963 | GCATGCTAATTTCCACTCTATTATGC | 58.974 | 38.462 | 11.37 | 0.00 | 0.00 | 3.14 |
67 | 68 | 7.094463 | GCATGCTAATTTCCACTCTATTATGCT | 60.094 | 37.037 | 11.37 | 0.00 | 0.00 | 3.79 |
68 | 69 | 9.440773 | CATGCTAATTTCCACTCTATTATGCTA | 57.559 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
111 | 112 | 9.816354 | ATTTTGCAACTACAAACTAATGAAACT | 57.184 | 25.926 | 0.00 | 0.00 | 39.18 | 2.66 |
112 | 113 | 8.850454 | TTTGCAACTACAAACTAATGAAACTC | 57.150 | 30.769 | 0.00 | 0.00 | 34.68 | 3.01 |
113 | 114 | 7.561021 | TGCAACTACAAACTAATGAAACTCA | 57.439 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
114 | 115 | 7.639039 | TGCAACTACAAACTAATGAAACTCAG | 58.361 | 34.615 | 0.00 | 0.00 | 0.00 | 3.35 |
115 | 116 | 7.282224 | TGCAACTACAAACTAATGAAACTCAGT | 59.718 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
116 | 117 | 8.770828 | GCAACTACAAACTAATGAAACTCAGTA | 58.229 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
122 | 123 | 9.052759 | ACAAACTAATGAAACTCAGTAAATCGT | 57.947 | 29.630 | 0.00 | 0.00 | 0.00 | 3.73 |
126 | 127 | 9.871238 | ACTAATGAAACTCAGTAAATCGTATGT | 57.129 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
135 | 136 | 9.871238 | ACTCAGTAAATCGTATGTATTTTCAGT | 57.129 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
231 | 232 | 3.821995 | GGCAACAACGTGTGAGGT | 58.178 | 55.556 | 0.00 | 0.00 | 0.00 | 3.85 |
232 | 233 | 1.355210 | GGCAACAACGTGTGAGGTG | 59.645 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
233 | 234 | 1.355210 | GCAACAACGTGTGAGGTGG | 59.645 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
234 | 235 | 1.373590 | GCAACAACGTGTGAGGTGGT | 61.374 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
235 | 236 | 1.942677 | CAACAACGTGTGAGGTGGTA | 58.057 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
236 | 237 | 2.489971 | CAACAACGTGTGAGGTGGTAT | 58.510 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
237 | 238 | 2.450609 | ACAACGTGTGAGGTGGTATC | 57.549 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
238 | 239 | 1.689813 | ACAACGTGTGAGGTGGTATCA | 59.310 | 47.619 | 0.00 | 0.00 | 0.00 | 2.15 |
239 | 240 | 2.301870 | ACAACGTGTGAGGTGGTATCAT | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
240 | 241 | 3.512329 | ACAACGTGTGAGGTGGTATCATA | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
241 | 242 | 4.161565 | ACAACGTGTGAGGTGGTATCATAT | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
242 | 243 | 4.322080 | ACGTGTGAGGTGGTATCATATG | 57.678 | 45.455 | 0.00 | 0.00 | 32.75 | 1.78 |
243 | 244 | 3.704566 | ACGTGTGAGGTGGTATCATATGT | 59.295 | 43.478 | 1.90 | 0.00 | 34.40 | 2.29 |
244 | 245 | 4.161565 | ACGTGTGAGGTGGTATCATATGTT | 59.838 | 41.667 | 1.90 | 0.00 | 35.31 | 2.71 |
245 | 246 | 5.116180 | CGTGTGAGGTGGTATCATATGTTT | 58.884 | 41.667 | 1.90 | 0.00 | 0.00 | 2.83 |
246 | 247 | 5.234329 | CGTGTGAGGTGGTATCATATGTTTC | 59.766 | 44.000 | 1.90 | 0.00 | 0.00 | 2.78 |
247 | 248 | 5.527582 | GTGTGAGGTGGTATCATATGTTTCC | 59.472 | 44.000 | 1.90 | 2.64 | 0.00 | 3.13 |
248 | 249 | 5.428457 | TGTGAGGTGGTATCATATGTTTCCT | 59.572 | 40.000 | 1.90 | 3.92 | 0.00 | 3.36 |
249 | 250 | 5.992217 | GTGAGGTGGTATCATATGTTTCCTC | 59.008 | 44.000 | 1.90 | 12.03 | 39.24 | 3.71 |
250 | 251 | 5.905331 | TGAGGTGGTATCATATGTTTCCTCT | 59.095 | 40.000 | 20.38 | 13.92 | 39.44 | 3.69 |
251 | 252 | 6.179906 | AGGTGGTATCATATGTTTCCTCTG | 57.820 | 41.667 | 1.90 | 0.00 | 0.00 | 3.35 |
252 | 253 | 5.667626 | AGGTGGTATCATATGTTTCCTCTGT | 59.332 | 40.000 | 1.90 | 0.00 | 0.00 | 3.41 |
253 | 254 | 6.844388 | AGGTGGTATCATATGTTTCCTCTGTA | 59.156 | 38.462 | 1.90 | 0.00 | 0.00 | 2.74 |
254 | 255 | 7.347222 | AGGTGGTATCATATGTTTCCTCTGTAA | 59.653 | 37.037 | 1.90 | 0.00 | 0.00 | 2.41 |
255 | 256 | 7.990886 | GGTGGTATCATATGTTTCCTCTGTAAA | 59.009 | 37.037 | 1.90 | 0.00 | 0.00 | 2.01 |
256 | 257 | 9.046296 | GTGGTATCATATGTTTCCTCTGTAAAG | 57.954 | 37.037 | 1.90 | 0.00 | 0.00 | 1.85 |
257 | 258 | 8.988060 | TGGTATCATATGTTTCCTCTGTAAAGA | 58.012 | 33.333 | 1.90 | 0.00 | 0.00 | 2.52 |
258 | 259 | 9.832445 | GGTATCATATGTTTCCTCTGTAAAGAA | 57.168 | 33.333 | 1.90 | 0.00 | 0.00 | 2.52 |
270 | 271 | 9.444600 | TTCCTCTGTAAAGAAATATAAAAGCGT | 57.555 | 29.630 | 0.00 | 0.00 | 0.00 | 5.07 |
271 | 272 | 9.444600 | TCCTCTGTAAAGAAATATAAAAGCGTT | 57.555 | 29.630 | 0.00 | 0.00 | 0.00 | 4.84 |
319 | 320 | 8.494016 | AAACGCTCTTATATTTCTTTAGTGCT | 57.506 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
320 | 321 | 7.470289 | ACGCTCTTATATTTCTTTAGTGCTG | 57.530 | 36.000 | 0.00 | 0.00 | 0.00 | 4.41 |
321 | 322 | 7.265673 | ACGCTCTTATATTTCTTTAGTGCTGA | 58.734 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
322 | 323 | 7.764443 | ACGCTCTTATATTTCTTTAGTGCTGAA | 59.236 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
323 | 324 | 8.604035 | CGCTCTTATATTTCTTTAGTGCTGAAA | 58.396 | 33.333 | 0.00 | 0.00 | 34.75 | 2.69 |
333 | 334 | 8.865590 | TTCTTTAGTGCTGAAATAAACAAACC | 57.134 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
334 | 335 | 8.232913 | TCTTTAGTGCTGAAATAAACAAACCT | 57.767 | 30.769 | 0.00 | 0.00 | 0.00 | 3.50 |
335 | 336 | 9.344772 | TCTTTAGTGCTGAAATAAACAAACCTA | 57.655 | 29.630 | 0.00 | 0.00 | 0.00 | 3.08 |
338 | 339 | 7.158099 | AGTGCTGAAATAAACAAACCTATCC | 57.842 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
339 | 340 | 6.719370 | AGTGCTGAAATAAACAAACCTATCCA | 59.281 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
340 | 341 | 7.397192 | AGTGCTGAAATAAACAAACCTATCCAT | 59.603 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
341 | 342 | 8.034804 | GTGCTGAAATAAACAAACCTATCCATT | 58.965 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
342 | 343 | 8.034215 | TGCTGAAATAAACAAACCTATCCATTG | 58.966 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
343 | 344 | 8.034804 | GCTGAAATAAACAAACCTATCCATTGT | 58.965 | 33.333 | 0.00 | 0.00 | 38.85 | 2.71 |
344 | 345 | 9.573133 | CTGAAATAAACAAACCTATCCATTGTC | 57.427 | 33.333 | 0.00 | 0.00 | 36.33 | 3.18 |
345 | 346 | 9.308000 | TGAAATAAACAAACCTATCCATTGTCT | 57.692 | 29.630 | 0.00 | 0.00 | 36.33 | 3.41 |
346 | 347 | 9.788960 | GAAATAAACAAACCTATCCATTGTCTC | 57.211 | 33.333 | 0.00 | 0.00 | 36.33 | 3.36 |
347 | 348 | 5.880054 | AAACAAACCTATCCATTGTCTCG | 57.120 | 39.130 | 0.00 | 0.00 | 36.33 | 4.04 |
348 | 349 | 4.819105 | ACAAACCTATCCATTGTCTCGA | 57.181 | 40.909 | 0.00 | 0.00 | 32.02 | 4.04 |
349 | 350 | 4.504858 | ACAAACCTATCCATTGTCTCGAC | 58.495 | 43.478 | 0.00 | 0.00 | 32.02 | 4.20 |
350 | 351 | 3.821421 | AACCTATCCATTGTCTCGACC | 57.179 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
351 | 352 | 3.033659 | ACCTATCCATTGTCTCGACCT | 57.966 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
352 | 353 | 2.959707 | ACCTATCCATTGTCTCGACCTC | 59.040 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
353 | 354 | 2.030717 | CCTATCCATTGTCTCGACCTCG | 60.031 | 54.545 | 0.00 | 0.00 | 41.45 | 4.63 |
354 | 355 | 1.475403 | ATCCATTGTCTCGACCTCGT | 58.525 | 50.000 | 0.00 | 0.00 | 40.80 | 4.18 |
355 | 356 | 0.526211 | TCCATTGTCTCGACCTCGTG | 59.474 | 55.000 | 0.00 | 0.00 | 40.80 | 4.35 |
356 | 357 | 1.078759 | CCATTGTCTCGACCTCGTGC | 61.079 | 60.000 | 0.00 | 0.00 | 40.80 | 5.34 |
357 | 358 | 1.154016 | ATTGTCTCGACCTCGTGCG | 60.154 | 57.895 | 0.00 | 0.00 | 40.80 | 5.34 |
358 | 359 | 3.891586 | TTGTCTCGACCTCGTGCGC | 62.892 | 63.158 | 0.00 | 0.00 | 40.80 | 6.09 |
374 | 375 | 3.993234 | GCGCCGCTGACGATCATG | 61.993 | 66.667 | 0.00 | 0.00 | 43.93 | 3.07 |
375 | 376 | 3.993234 | CGCCGCTGACGATCATGC | 61.993 | 66.667 | 0.00 | 0.00 | 43.93 | 4.06 |
376 | 377 | 3.643978 | GCCGCTGACGATCATGCC | 61.644 | 66.667 | 0.00 | 0.00 | 43.93 | 4.40 |
377 | 378 | 2.969238 | CCGCTGACGATCATGCCC | 60.969 | 66.667 | 0.00 | 0.00 | 43.93 | 5.36 |
378 | 379 | 2.969238 | CGCTGACGATCATGCCCC | 60.969 | 66.667 | 0.00 | 0.00 | 43.93 | 5.80 |
379 | 380 | 2.507944 | GCTGACGATCATGCCCCT | 59.492 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
380 | 381 | 1.890979 | GCTGACGATCATGCCCCTG | 60.891 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
381 | 382 | 1.890979 | CTGACGATCATGCCCCTGC | 60.891 | 63.158 | 0.00 | 0.00 | 38.26 | 4.85 |
382 | 383 | 2.592861 | GACGATCATGCCCCTGCC | 60.593 | 66.667 | 0.00 | 0.00 | 36.33 | 4.85 |
383 | 384 | 3.092511 | ACGATCATGCCCCTGCCT | 61.093 | 61.111 | 0.00 | 0.00 | 36.33 | 4.75 |
384 | 385 | 2.281345 | CGATCATGCCCCTGCCTC | 60.281 | 66.667 | 0.00 | 0.00 | 36.33 | 4.70 |
385 | 386 | 2.281345 | GATCATGCCCCTGCCTCG | 60.281 | 66.667 | 0.00 | 0.00 | 36.33 | 4.63 |
386 | 387 | 3.092511 | ATCATGCCCCTGCCTCGT | 61.093 | 61.111 | 0.00 | 0.00 | 36.33 | 4.18 |
387 | 388 | 3.112205 | ATCATGCCCCTGCCTCGTC | 62.112 | 63.158 | 0.00 | 0.00 | 36.33 | 4.20 |
393 | 394 | 4.457496 | CCCTGCCTCGTCGCACAT | 62.457 | 66.667 | 0.00 | 0.00 | 34.35 | 3.21 |
394 | 395 | 2.434884 | CCTGCCTCGTCGCACATT | 60.435 | 61.111 | 0.00 | 0.00 | 34.35 | 2.71 |
395 | 396 | 2.034879 | CCTGCCTCGTCGCACATTT | 61.035 | 57.895 | 0.00 | 0.00 | 34.35 | 2.32 |
396 | 397 | 1.421485 | CTGCCTCGTCGCACATTTC | 59.579 | 57.895 | 0.00 | 0.00 | 34.35 | 2.17 |
397 | 398 | 1.291184 | CTGCCTCGTCGCACATTTCA | 61.291 | 55.000 | 0.00 | 0.00 | 34.35 | 2.69 |
398 | 399 | 1.291184 | TGCCTCGTCGCACATTTCAG | 61.291 | 55.000 | 0.00 | 0.00 | 32.62 | 3.02 |
399 | 400 | 1.014044 | GCCTCGTCGCACATTTCAGA | 61.014 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
400 | 401 | 1.428448 | CCTCGTCGCACATTTCAGAA | 58.572 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
401 | 402 | 1.126846 | CCTCGTCGCACATTTCAGAAC | 59.873 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
402 | 403 | 0.781787 | TCGTCGCACATTTCAGAACG | 59.218 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
403 | 404 | 0.179250 | CGTCGCACATTTCAGAACGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
404 | 405 | 1.144969 | GTCGCACATTTCAGAACGGA | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
405 | 406 | 1.529438 | GTCGCACATTTCAGAACGGAA | 59.471 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
406 | 407 | 1.529438 | TCGCACATTTCAGAACGGAAC | 59.471 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
430 | 431 | 3.868661 | GGGACAAAACGCAACTTCAAAAT | 59.131 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
436 | 437 | 8.635877 | ACAAAACGCAACTTCAAAATGTTATA | 57.364 | 26.923 | 0.00 | 0.00 | 0.00 | 0.98 |
455 | 456 | 9.976511 | ATGTTATATTTTCGATTCGAAGACCTA | 57.023 | 29.630 | 19.69 | 8.05 | 46.43 | 3.08 |
487 | 488 | 0.883370 | GGAATGGAATACGCCGGGTC | 60.883 | 60.000 | 2.18 | 0.00 | 0.00 | 4.46 |
500 | 501 | 4.436368 | GGGTCAGTCTCCGAGGAA | 57.564 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
509 | 510 | 3.258622 | CAGTCTCCGAGGAAATATACCCC | 59.741 | 52.174 | 0.00 | 0.00 | 0.00 | 4.95 |
518 | 519 | 0.675633 | AAATATACCCCGTCCCGTCG | 59.324 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
536 | 537 | 1.555075 | TCGTCCCATCTCCTTTCCTTG | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
541 | 542 | 2.041620 | CCCATCTCCTTTCCTTGTTCCA | 59.958 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
551 | 552 | 1.146774 | TCCTTGTTCCATGGGCAAAGA | 59.853 | 47.619 | 13.02 | 13.40 | 30.78 | 2.52 |
619 | 621 | 2.501128 | GCCTCGGTCTGCATGCTA | 59.499 | 61.111 | 20.33 | 4.02 | 0.00 | 3.49 |
639 | 645 | 5.766150 | CTATCTGTAGCTTCTACTGCACT | 57.234 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
643 | 652 | 1.103803 | TAGCTTCTACTGCACTCCCG | 58.896 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
676 | 691 | 1.410882 | CACCTCTTCGATCTTCCCTCC | 59.589 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
688 | 710 | 2.767496 | CCCTCCCCAGCTCTCCTG | 60.767 | 72.222 | 0.00 | 0.00 | 41.41 | 3.86 |
735 | 757 | 2.032550 | CAGCTTTCACTTCACACCACAG | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
748 | 770 | 2.807045 | CACAGCTCGACTCACGCC | 60.807 | 66.667 | 0.00 | 0.00 | 42.26 | 5.68 |
814 | 842 | 1.777878 | TCCTTGGCCAAGTTAACCAGA | 59.222 | 47.619 | 37.09 | 24.73 | 36.72 | 3.86 |
944 | 1003 | 0.584876 | GCTAAAGAAACCGTGCGTGT | 59.415 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
947 | 1006 | 1.654317 | AAAGAAACCGTGCGTGTGTA | 58.346 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
955 | 1014 | 1.366366 | GTGCGTGTGTACTCCCTGT | 59.634 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
956 | 1015 | 0.666577 | GTGCGTGTGTACTCCCTGTC | 60.667 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
957 | 1016 | 1.080025 | GCGTGTGTACTCCCTGTCC | 60.080 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
958 | 1017 | 1.812686 | GCGTGTGTACTCCCTGTCCA | 61.813 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
959 | 1018 | 0.895530 | CGTGTGTACTCCCTGTCCAT | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
960 | 1019 | 2.097036 | CGTGTGTACTCCCTGTCCATA | 58.903 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
961 | 1020 | 2.494471 | CGTGTGTACTCCCTGTCCATAA | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
962 | 1021 | 3.675228 | CGTGTGTACTCCCTGTCCATAAC | 60.675 | 52.174 | 0.00 | 0.00 | 0.00 | 1.89 |
989 | 1051 | 3.479203 | ATCGCCATGGCCGGAGAA | 61.479 | 61.111 | 30.79 | 9.85 | 38.44 | 2.87 |
1000 | 1062 | 1.038130 | GCCGGAGAAGGAGAGTGCTA | 61.038 | 60.000 | 5.05 | 0.00 | 0.00 | 3.49 |
1006 | 1068 | 2.364002 | GAGAAGGAGAGTGCTATGTCCC | 59.636 | 54.545 | 2.00 | 0.00 | 0.00 | 4.46 |
1055 | 1120 | 1.135373 | TCGCGCAGAAACTAAGAGAGG | 60.135 | 52.381 | 8.75 | 0.00 | 0.00 | 3.69 |
1062 | 1127 | 2.660556 | AGAAACTAAGAGAGGAGGGGGA | 59.339 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1287 | 1377 | 1.071471 | CAACCAGGACTGCTCCGTT | 59.929 | 57.895 | 0.00 | 0.00 | 42.22 | 4.44 |
1309 | 1399 | 1.079490 | TCTGGGAGGTGAGTTCCATCT | 59.921 | 52.381 | 0.00 | 0.00 | 39.39 | 2.90 |
1324 | 1419 | 1.520494 | CATCTTCCATCCATCGCCTG | 58.480 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1325 | 1420 | 0.250640 | ATCTTCCATCCATCGCCTGC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1326 | 1421 | 1.147824 | CTTCCATCCATCGCCTGCT | 59.852 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
1327 | 1422 | 0.465097 | CTTCCATCCATCGCCTGCTT | 60.465 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1329 | 1424 | 0.749091 | TCCATCCATCGCCTGCTTTG | 60.749 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1331 | 1426 | 1.077212 | ATCCATCGCCTGCTTTGCT | 60.077 | 52.632 | 0.00 | 0.00 | 0.00 | 3.91 |
1334 | 1429 | 1.428219 | CATCGCCTGCTTTGCTCTG | 59.572 | 57.895 | 0.00 | 0.00 | 0.00 | 3.35 |
1337 | 1432 | 2.256591 | CGCCTGCTTTGCTCTGTGT | 61.257 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
1341 | 1436 | 1.677576 | CCTGCTTTGCTCTGTGTTTCA | 59.322 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
1348 | 1443 | 4.944962 | TTGCTCTGTGTTTCATAATCCG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
1349 | 1444 | 2.677836 | TGCTCTGTGTTTCATAATCCGC | 59.322 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
1384 | 1753 | 0.729816 | GCTCTGTTCCACGTCTCGTC | 60.730 | 60.000 | 0.00 | 0.00 | 38.32 | 4.20 |
1402 | 1771 | 2.095768 | CGTCGCAATCATTGGTGACTTT | 60.096 | 45.455 | 0.00 | 0.00 | 41.21 | 2.66 |
1405 | 1774 | 5.006261 | CGTCGCAATCATTGGTGACTTTATA | 59.994 | 40.000 | 0.00 | 0.00 | 41.21 | 0.98 |
1439 | 1809 | 3.570926 | ATTAGCGACGAGACAACTCAA | 57.429 | 42.857 | 0.00 | 0.00 | 42.72 | 3.02 |
1442 | 1812 | 3.784701 | AGCGACGAGACAACTCAATAT | 57.215 | 42.857 | 0.00 | 0.00 | 42.72 | 1.28 |
1443 | 1813 | 4.111375 | AGCGACGAGACAACTCAATATT | 57.889 | 40.909 | 0.00 | 0.00 | 42.72 | 1.28 |
1444 | 1814 | 4.106197 | AGCGACGAGACAACTCAATATTC | 58.894 | 43.478 | 0.00 | 0.00 | 42.72 | 1.75 |
1446 | 1816 | 4.205385 | GCGACGAGACAACTCAATATTCTC | 59.795 | 45.833 | 0.00 | 0.00 | 42.72 | 2.87 |
1450 | 1820 | 6.096036 | ACGAGACAACTCAATATTCTCACTG | 58.904 | 40.000 | 0.00 | 0.00 | 42.72 | 3.66 |
1454 | 1824 | 7.675062 | AGACAACTCAATATTCTCACTGACTT | 58.325 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1455 | 1825 | 7.601886 | AGACAACTCAATATTCTCACTGACTTG | 59.398 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
1456 | 1826 | 6.652481 | ACAACTCAATATTCTCACTGACTTGG | 59.348 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
1457 | 1827 | 6.611613 | ACTCAATATTCTCACTGACTTGGA | 57.388 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
1467 | 1840 | 6.190587 | TCTCACTGACTTGGAGATTCTCATA | 58.809 | 40.000 | 15.36 | 1.24 | 33.01 | 2.15 |
1494 | 1945 | 9.936759 | AGGAACTTAGTTATGAAGAAGAAGAAG | 57.063 | 33.333 | 0.00 | 0.00 | 27.25 | 2.85 |
1495 | 1946 | 9.930693 | GGAACTTAGTTATGAAGAAGAAGAAGA | 57.069 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
1538 | 1996 | 3.420893 | CTTTGTCCCCTCATTGCTGTAA | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
1541 | 1999 | 1.282157 | GTCCCCTCATTGCTGTAACCT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
1542 | 2000 | 1.281867 | TCCCCTCATTGCTGTAACCTG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1543 | 2001 | 1.004745 | CCCCTCATTGCTGTAACCTGT | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1551 | 2009 | 5.239306 | TCATTGCTGTAACCTGTTGAAGAAG | 59.761 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1596 | 2115 | 6.265196 | ACCACTGAATAAATCAAACAGCTTCA | 59.735 | 34.615 | 0.00 | 0.00 | 37.67 | 3.02 |
1597 | 2116 | 7.039504 | ACCACTGAATAAATCAAACAGCTTCAT | 60.040 | 33.333 | 0.00 | 0.00 | 37.67 | 2.57 |
1598 | 2117 | 7.274904 | CCACTGAATAAATCAAACAGCTTCATG | 59.725 | 37.037 | 0.00 | 0.00 | 37.67 | 3.07 |
1599 | 2118 | 7.811236 | CACTGAATAAATCAAACAGCTTCATGT | 59.189 | 33.333 | 0.00 | 0.00 | 37.67 | 3.21 |
1600 | 2119 | 9.013229 | ACTGAATAAATCAAACAGCTTCATGTA | 57.987 | 29.630 | 0.00 | 0.00 | 37.67 | 2.29 |
1601 | 2120 | 9.282247 | CTGAATAAATCAAACAGCTTCATGTAC | 57.718 | 33.333 | 0.00 | 0.00 | 37.67 | 2.90 |
1604 | 2123 | 5.633830 | AATCAAACAGCTTCATGTACCTG | 57.366 | 39.130 | 0.00 | 0.32 | 31.70 | 4.00 |
1605 | 2124 | 4.085357 | TCAAACAGCTTCATGTACCTGT | 57.915 | 40.909 | 8.40 | 8.40 | 40.02 | 4.00 |
1607 | 2126 | 4.067896 | CAAACAGCTTCATGTACCTGTCT | 58.932 | 43.478 | 12.70 | 0.69 | 37.55 | 3.41 |
1608 | 2127 | 3.601443 | ACAGCTTCATGTACCTGTCTC | 57.399 | 47.619 | 8.40 | 0.00 | 33.57 | 3.36 |
1609 | 2128 | 2.899900 | ACAGCTTCATGTACCTGTCTCA | 59.100 | 45.455 | 8.40 | 0.00 | 33.57 | 3.27 |
1611 | 2130 | 3.056250 | CAGCTTCATGTACCTGTCTCAGT | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
1612 | 2131 | 3.194542 | AGCTTCATGTACCTGTCTCAGTC | 59.805 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1615 | 2134 | 2.493675 | TCATGTACCTGTCTCAGTCTGC | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1630 | 2164 | 1.419387 | GTCTGCCTGAGATATGGGCTT | 59.581 | 52.381 | 0.00 | 0.00 | 45.45 | 4.35 |
1631 | 2165 | 1.696336 | TCTGCCTGAGATATGGGCTTC | 59.304 | 52.381 | 0.00 | 0.00 | 45.45 | 3.86 |
1632 | 2166 | 1.419012 | CTGCCTGAGATATGGGCTTCA | 59.581 | 52.381 | 0.00 | 0.00 | 45.45 | 3.02 |
1633 | 2167 | 1.419012 | TGCCTGAGATATGGGCTTCAG | 59.581 | 52.381 | 0.00 | 0.00 | 45.45 | 3.02 |
1634 | 2168 | 1.881498 | GCCTGAGATATGGGCTTCAGC | 60.881 | 57.143 | 0.00 | 0.00 | 42.31 | 4.26 |
1708 | 2267 | 3.065648 | TGAGGTGGTTTAGTTCGTTTTGC | 59.934 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
1725 | 2284 | 5.502606 | GTTTTGCACTCTTCAGTACAGTTC | 58.497 | 41.667 | 0.00 | 0.00 | 27.07 | 3.01 |
1747 | 2309 | 1.864711 | GTTGTTGCTGCGACAAGTCTA | 59.135 | 47.619 | 30.40 | 11.01 | 38.27 | 2.59 |
1755 | 2317 | 3.865745 | GCTGCGACAAGTCTACAATACAT | 59.134 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
1757 | 2319 | 4.430007 | TGCGACAAGTCTACAATACATCC | 58.570 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1923 | 2818 | 0.178068 | TCTATCGGAGCAAAGTGCCC | 59.822 | 55.000 | 0.00 | 0.00 | 46.52 | 5.36 |
1974 | 2922 | 6.828785 | ACTAAATTACTGATGTTGGCCCTTAG | 59.171 | 38.462 | 0.00 | 0.00 | 0.00 | 2.18 |
2099 | 3053 | 5.074584 | CCTCTAGGCGTTTCTCTTTTACT | 57.925 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2100 | 3054 | 6.205101 | CCTCTAGGCGTTTCTCTTTTACTA | 57.795 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2157 | 3215 | 2.793232 | GGCATAATACGTGTCTCGGTTC | 59.207 | 50.000 | 0.00 | 0.00 | 44.69 | 3.62 |
2199 | 3272 | 7.013369 | GTGTTAGGTTTCTTGGTTTCTGAATCT | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
2206 | 3279 | 8.352942 | GTTTCTTGGTTTCTGAATCTAATGTGT | 58.647 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
2207 | 3280 | 9.567776 | TTTCTTGGTTTCTGAATCTAATGTGTA | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
2217 | 3290 | 3.520290 | TCTAATGTGTAGCTTGGGTCG | 57.480 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
2230 | 3316 | 1.946984 | TGGGTCGTTATCCAAGAGGT | 58.053 | 50.000 | 0.00 | 0.00 | 30.85 | 3.85 |
2259 | 3390 | 0.387239 | GATGGCAGAAAACGGTGCAC | 60.387 | 55.000 | 8.80 | 8.80 | 41.75 | 4.57 |
2317 | 4538 | 3.512033 | ACTTCTCAAGCCGTACATCTC | 57.488 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
2329 | 4550 | 5.834204 | AGCCGTACATCTCTAATTCCTAGTT | 59.166 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2330 | 4551 | 6.016108 | AGCCGTACATCTCTAATTCCTAGTTC | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
2331 | 4552 | 6.238953 | GCCGTACATCTCTAATTCCTAGTTCA | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
2332 | 4553 | 7.683704 | GCCGTACATCTCTAATTCCTAGTTCAA | 60.684 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
2333 | 4554 | 8.361139 | CCGTACATCTCTAATTCCTAGTTCAAT | 58.639 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2334 | 4555 | 9.400638 | CGTACATCTCTAATTCCTAGTTCAATC | 57.599 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
2337 | 4558 | 8.356657 | ACATCTCTAATTCCTAGTTCAATCTCG | 58.643 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
2338 | 4559 | 8.572185 | CATCTCTAATTCCTAGTTCAATCTCGA | 58.428 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
2339 | 4560 | 8.521170 | TCTCTAATTCCTAGTTCAATCTCGAA | 57.479 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
2340 | 4561 | 8.967918 | TCTCTAATTCCTAGTTCAATCTCGAAA | 58.032 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
2341 | 4562 | 9.587772 | CTCTAATTCCTAGTTCAATCTCGAAAA | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2342 | 4563 | 9.938280 | TCTAATTCCTAGTTCAATCTCGAAAAA | 57.062 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2422 | 4672 | 6.293735 | CGAAATGGACACCAAGCTAAAAGTAA | 60.294 | 38.462 | 0.00 | 0.00 | 36.95 | 2.24 |
2604 | 4860 | 2.125952 | CGCTGGCGTCACTCATCA | 60.126 | 61.111 | 6.83 | 0.00 | 34.35 | 3.07 |
2693 | 4952 | 2.737688 | CGTCGACGAAGAGCTCCGA | 61.738 | 63.158 | 33.35 | 12.77 | 43.02 | 4.55 |
2745 | 5004 | 0.900421 | CTCCACTGCTCTGTCCATCA | 59.100 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2929 | 5222 | 2.021723 | GCATTCTTGGGACGGCCATTA | 61.022 | 52.381 | 11.00 | 0.00 | 35.15 | 1.90 |
2996 | 5290 | 4.235762 | AGTGCAAGGGTCGCGTGT | 62.236 | 61.111 | 5.77 | 0.00 | 0.00 | 4.49 |
3178 | 5472 | 2.911143 | GTCATCCTGGCCACCGAT | 59.089 | 61.111 | 0.00 | 2.45 | 0.00 | 4.18 |
3237 | 5557 | 1.948834 | TGGCACAATCCTATTGCATCG | 59.051 | 47.619 | 0.00 | 0.00 | 38.04 | 3.84 |
3355 | 5675 | 4.335647 | AAGCGCCTGGTCCAGTGG | 62.336 | 66.667 | 17.85 | 1.40 | 0.00 | 4.00 |
3487 | 5807 | 0.109597 | CATTGCCGTGAAGACCAAGC | 60.110 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3571 | 5899 | 4.978083 | ATGGAAGATCACAGCAAATCAC | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
3573 | 5901 | 4.143543 | TGGAAGATCACAGCAAATCACAA | 58.856 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
3576 | 5904 | 2.095567 | AGATCACAGCAAATCACAACGC | 60.096 | 45.455 | 0.00 | 0.00 | 0.00 | 4.84 |
3615 | 5955 | 3.112709 | GAACTGCTGCCGGTCGAC | 61.113 | 66.667 | 7.13 | 7.13 | 0.00 | 4.20 |
3629 | 5969 | 1.266466 | GTCGACGGTCGGAAAATCTC | 58.734 | 55.000 | 28.07 | 7.24 | 40.88 | 2.75 |
3695 | 6036 | 5.048573 | GGCAAATGCATTTTTGTCCTCATTT | 60.049 | 36.000 | 21.95 | 0.00 | 44.36 | 2.32 |
3697 | 6038 | 6.919115 | GCAAATGCATTTTTGTCCTCATTTTT | 59.081 | 30.769 | 21.95 | 0.00 | 41.59 | 1.94 |
3698 | 6039 | 7.096394 | GCAAATGCATTTTTGTCCTCATTTTTG | 60.096 | 33.333 | 21.95 | 7.80 | 41.59 | 2.44 |
3706 | 6047 | 4.782019 | TGTCCTCATTTTTGGTGTATGC | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 3.14 |
3749 | 6093 | 4.380867 | GGAAATCGTCACAATCATTGCCTT | 60.381 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3750 | 6094 | 3.770263 | ATCGTCACAATCATTGCCTTG | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 3.61 |
3751 | 6095 | 2.503331 | TCGTCACAATCATTGCCTTGT | 58.497 | 42.857 | 0.00 | 0.30 | 36.04 | 3.16 |
3756 | 6100 | 5.163723 | CGTCACAATCATTGCCTTGTTATCT | 60.164 | 40.000 | 0.00 | 0.00 | 33.45 | 1.98 |
3793 | 6137 | 0.532862 | CAGGGTCATACATCACCGCC | 60.533 | 60.000 | 0.00 | 0.00 | 32.89 | 6.13 |
3826 | 6170 | 2.837532 | ATTTGCGCCCAAAACAATCT | 57.162 | 40.000 | 4.18 | 0.00 | 43.58 | 2.40 |
3942 | 6286 | 3.507233 | TGAGAATTTCAATCTGTGGTGGC | 59.493 | 43.478 | 0.00 | 0.00 | 31.34 | 5.01 |
3966 | 6310 | 0.731514 | GCCGTGAAAGTCATCGTCGA | 60.732 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4085 | 6429 | 3.007581 | ACCCAGATAGGTGTGGTCC | 57.992 | 57.895 | 0.00 | 0.00 | 39.24 | 4.46 |
4087 | 6431 | 0.833287 | CCCAGATAGGTGTGGTCCAG | 59.167 | 60.000 | 0.00 | 0.00 | 37.07 | 3.86 |
4148 | 6492 | 2.309613 | AGAACACTGCAAGGCAATCAA | 58.690 | 42.857 | 0.00 | 0.00 | 38.41 | 2.57 |
4149 | 6493 | 2.694628 | AGAACACTGCAAGGCAATCAAA | 59.305 | 40.909 | 0.00 | 0.00 | 38.41 | 2.69 |
4164 | 6508 | 0.464735 | TCAAAACCCGTGTGAGGTGG | 60.465 | 55.000 | 0.00 | 0.00 | 37.78 | 4.61 |
4186 | 6530 | 2.890945 | TCGCAATATCAGAAGGATCGGA | 59.109 | 45.455 | 0.00 | 0.00 | 37.44 | 4.55 |
4189 | 6533 | 4.636249 | GCAATATCAGAAGGATCGGACTT | 58.364 | 43.478 | 0.00 | 0.00 | 37.44 | 3.01 |
4222 | 6581 | 4.202305 | CCCCCTTGATGATAGAGACAGTTC | 60.202 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4267 | 6627 | 6.981762 | AGAACTAGAATGTTCAGAGCAATG | 57.018 | 37.500 | 0.00 | 0.00 | 46.19 | 2.82 |
4343 | 6705 | 4.583073 | AGCAATGATATCATCTTGCTTGCA | 59.417 | 37.500 | 28.80 | 0.00 | 44.03 | 4.08 |
4401 | 6763 | 9.159254 | AGATGTACCAGGAGAACAAATATATCA | 57.841 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.072131 | GGACTTTCTCCATGCACTTTGTA | 58.928 | 43.478 | 0.00 | 0.00 | 39.21 | 2.41 |
3 | 4 | 3.228188 | TGGACTTTCTCCATGCACTTT | 57.772 | 42.857 | 0.00 | 0.00 | 44.99 | 2.66 |
4 | 5 | 2.957402 | TGGACTTTCTCCATGCACTT | 57.043 | 45.000 | 0.00 | 0.00 | 44.99 | 3.16 |
12 | 13 | 2.930826 | TGTTGAGGTGGACTTTCTCC | 57.069 | 50.000 | 0.00 | 0.00 | 39.97 | 3.71 |
13 | 14 | 2.485814 | GCATGTTGAGGTGGACTTTCTC | 59.514 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
14 | 15 | 2.158623 | TGCATGTTGAGGTGGACTTTCT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
15 | 16 | 2.229792 | TGCATGTTGAGGTGGACTTTC | 58.770 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
16 | 17 | 2.363306 | TGCATGTTGAGGTGGACTTT | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
17 | 18 | 2.363306 | TTGCATGTTGAGGTGGACTT | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
18 | 19 | 2.363306 | TTTGCATGTTGAGGTGGACT | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
19 | 20 | 4.737054 | CTTATTTGCATGTTGAGGTGGAC | 58.263 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
20 | 21 | 3.193267 | GCTTATTTGCATGTTGAGGTGGA | 59.807 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
21 | 22 | 3.056678 | TGCTTATTTGCATGTTGAGGTGG | 60.057 | 43.478 | 0.00 | 0.00 | 38.12 | 4.61 |
22 | 23 | 4.177165 | TGCTTATTTGCATGTTGAGGTG | 57.823 | 40.909 | 0.00 | 0.00 | 38.12 | 4.00 |
32 | 33 | 5.811613 | GTGGAAATTAGCATGCTTATTTGCA | 59.188 | 36.000 | 39.23 | 39.23 | 44.61 | 4.08 |
33 | 34 | 6.044682 | AGTGGAAATTAGCATGCTTATTTGC | 58.955 | 36.000 | 36.38 | 36.38 | 40.89 | 3.68 |
34 | 35 | 7.486647 | AGAGTGGAAATTAGCATGCTTATTTG | 58.513 | 34.615 | 36.26 | 0.00 | 36.03 | 2.32 |
35 | 36 | 7.651027 | AGAGTGGAAATTAGCATGCTTATTT | 57.349 | 32.000 | 33.35 | 33.35 | 37.79 | 1.40 |
36 | 37 | 8.930846 | ATAGAGTGGAAATTAGCATGCTTATT | 57.069 | 30.769 | 28.02 | 25.00 | 0.00 | 1.40 |
37 | 38 | 8.930846 | AATAGAGTGGAAATTAGCATGCTTAT | 57.069 | 30.769 | 28.02 | 20.16 | 0.00 | 1.73 |
39 | 40 | 8.790718 | CATAATAGAGTGGAAATTAGCATGCTT | 58.209 | 33.333 | 28.02 | 7.58 | 0.00 | 3.91 |
40 | 41 | 7.094463 | GCATAATAGAGTGGAAATTAGCATGCT | 60.094 | 37.037 | 25.99 | 25.99 | 0.00 | 3.79 |
41 | 42 | 7.025963 | GCATAATAGAGTGGAAATTAGCATGC | 58.974 | 38.462 | 10.51 | 10.51 | 0.00 | 4.06 |
42 | 43 | 8.332996 | AGCATAATAGAGTGGAAATTAGCATG | 57.667 | 34.615 | 0.00 | 0.00 | 0.00 | 4.06 |
85 | 86 | 9.816354 | AGTTTCATTAGTTTGTAGTTGCAAAAT | 57.184 | 25.926 | 0.00 | 0.00 | 39.65 | 1.82 |
86 | 87 | 9.296400 | GAGTTTCATTAGTTTGTAGTTGCAAAA | 57.704 | 29.630 | 0.00 | 0.00 | 39.65 | 2.44 |
87 | 88 | 8.462811 | TGAGTTTCATTAGTTTGTAGTTGCAAA | 58.537 | 29.630 | 0.00 | 0.00 | 36.17 | 3.68 |
88 | 89 | 7.990917 | TGAGTTTCATTAGTTTGTAGTTGCAA | 58.009 | 30.769 | 0.00 | 0.00 | 0.00 | 4.08 |
89 | 90 | 7.282224 | ACTGAGTTTCATTAGTTTGTAGTTGCA | 59.718 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
90 | 91 | 7.639945 | ACTGAGTTTCATTAGTTTGTAGTTGC | 58.360 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
96 | 97 | 9.052759 | ACGATTTACTGAGTTTCATTAGTTTGT | 57.947 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
100 | 101 | 9.871238 | ACATACGATTTACTGAGTTTCATTAGT | 57.129 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
109 | 110 | 9.871238 | ACTGAAAATACATACGATTTACTGAGT | 57.129 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
163 | 164 | 9.559732 | TGAGGTTCAATTATATCGAACATGAAT | 57.440 | 29.630 | 0.00 | 0.00 | 40.62 | 2.57 |
164 | 165 | 8.956533 | TGAGGTTCAATTATATCGAACATGAA | 57.043 | 30.769 | 0.00 | 0.00 | 40.62 | 2.57 |
196 | 197 | 9.579768 | GTTGTTGCCAAAATATGTTGTGATATA | 57.420 | 29.630 | 4.91 | 0.00 | 30.94 | 0.86 |
197 | 198 | 7.275341 | CGTTGTTGCCAAAATATGTTGTGATAT | 59.725 | 33.333 | 4.91 | 0.00 | 30.94 | 1.63 |
198 | 199 | 6.584184 | CGTTGTTGCCAAAATATGTTGTGATA | 59.416 | 34.615 | 4.91 | 0.00 | 30.94 | 2.15 |
199 | 200 | 5.404968 | CGTTGTTGCCAAAATATGTTGTGAT | 59.595 | 36.000 | 4.91 | 0.00 | 30.94 | 3.06 |
200 | 201 | 4.742167 | CGTTGTTGCCAAAATATGTTGTGA | 59.258 | 37.500 | 4.91 | 0.00 | 30.94 | 3.58 |
201 | 202 | 4.505922 | ACGTTGTTGCCAAAATATGTTGTG | 59.494 | 37.500 | 4.91 | 0.00 | 30.94 | 3.33 |
202 | 203 | 4.505922 | CACGTTGTTGCCAAAATATGTTGT | 59.494 | 37.500 | 4.91 | 0.00 | 30.94 | 3.32 |
203 | 204 | 4.505922 | ACACGTTGTTGCCAAAATATGTTG | 59.494 | 37.500 | 0.00 | 0.00 | 30.94 | 3.33 |
204 | 205 | 4.505922 | CACACGTTGTTGCCAAAATATGTT | 59.494 | 37.500 | 0.00 | 0.00 | 30.94 | 2.71 |
205 | 206 | 4.047822 | CACACGTTGTTGCCAAAATATGT | 58.952 | 39.130 | 0.00 | 0.00 | 30.94 | 2.29 |
206 | 207 | 4.294232 | TCACACGTTGTTGCCAAAATATG | 58.706 | 39.130 | 0.00 | 0.00 | 30.94 | 1.78 |
207 | 208 | 4.545610 | CTCACACGTTGTTGCCAAAATAT | 58.454 | 39.130 | 0.00 | 0.00 | 30.94 | 1.28 |
208 | 209 | 3.243234 | CCTCACACGTTGTTGCCAAAATA | 60.243 | 43.478 | 0.00 | 0.00 | 30.94 | 1.40 |
209 | 210 | 2.481104 | CCTCACACGTTGTTGCCAAAAT | 60.481 | 45.455 | 0.00 | 0.00 | 30.94 | 1.82 |
210 | 211 | 1.135257 | CCTCACACGTTGTTGCCAAAA | 60.135 | 47.619 | 0.00 | 0.00 | 30.94 | 2.44 |
211 | 212 | 0.453793 | CCTCACACGTTGTTGCCAAA | 59.546 | 50.000 | 0.00 | 0.00 | 30.94 | 3.28 |
212 | 213 | 0.678366 | ACCTCACACGTTGTTGCCAA | 60.678 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
213 | 214 | 1.078072 | ACCTCACACGTTGTTGCCA | 60.078 | 52.632 | 0.00 | 0.00 | 0.00 | 4.92 |
214 | 215 | 1.355210 | CACCTCACACGTTGTTGCC | 59.645 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
215 | 216 | 1.355210 | CCACCTCACACGTTGTTGC | 59.645 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
216 | 217 | 1.942677 | TACCACCTCACACGTTGTTG | 58.057 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
217 | 218 | 2.103432 | TGATACCACCTCACACGTTGTT | 59.897 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
218 | 219 | 1.689813 | TGATACCACCTCACACGTTGT | 59.310 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
219 | 220 | 2.448926 | TGATACCACCTCACACGTTG | 57.551 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
220 | 221 | 4.161565 | ACATATGATACCACCTCACACGTT | 59.838 | 41.667 | 10.38 | 0.00 | 0.00 | 3.99 |
221 | 222 | 3.704566 | ACATATGATACCACCTCACACGT | 59.295 | 43.478 | 10.38 | 0.00 | 0.00 | 4.49 |
222 | 223 | 4.322080 | ACATATGATACCACCTCACACG | 57.678 | 45.455 | 10.38 | 0.00 | 0.00 | 4.49 |
223 | 224 | 5.527582 | GGAAACATATGATACCACCTCACAC | 59.472 | 44.000 | 10.38 | 0.00 | 0.00 | 3.82 |
224 | 225 | 5.428457 | AGGAAACATATGATACCACCTCACA | 59.572 | 40.000 | 10.38 | 0.00 | 0.00 | 3.58 |
225 | 226 | 5.930135 | AGGAAACATATGATACCACCTCAC | 58.070 | 41.667 | 10.38 | 0.00 | 0.00 | 3.51 |
226 | 227 | 5.905331 | AGAGGAAACATATGATACCACCTCA | 59.095 | 40.000 | 23.02 | 0.00 | 42.32 | 3.86 |
227 | 228 | 6.183361 | ACAGAGGAAACATATGATACCACCTC | 60.183 | 42.308 | 10.38 | 15.85 | 40.83 | 3.85 |
228 | 229 | 5.667626 | ACAGAGGAAACATATGATACCACCT | 59.332 | 40.000 | 10.38 | 8.69 | 0.00 | 4.00 |
229 | 230 | 5.930135 | ACAGAGGAAACATATGATACCACC | 58.070 | 41.667 | 10.38 | 4.20 | 0.00 | 4.61 |
230 | 231 | 8.958119 | TTTACAGAGGAAACATATGATACCAC | 57.042 | 34.615 | 10.38 | 7.73 | 0.00 | 4.16 |
231 | 232 | 8.988060 | TCTTTACAGAGGAAACATATGATACCA | 58.012 | 33.333 | 10.38 | 0.00 | 0.00 | 3.25 |
232 | 233 | 9.832445 | TTCTTTACAGAGGAAACATATGATACC | 57.168 | 33.333 | 10.38 | 8.94 | 0.00 | 2.73 |
244 | 245 | 9.444600 | ACGCTTTTATATTTCTTTACAGAGGAA | 57.555 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
245 | 246 | 9.444600 | AACGCTTTTATATTTCTTTACAGAGGA | 57.555 | 29.630 | 0.00 | 0.00 | 0.00 | 3.71 |
293 | 294 | 9.595823 | AGCACTAAAGAAATATAAGAGCGTTTA | 57.404 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
294 | 295 | 8.391106 | CAGCACTAAAGAAATATAAGAGCGTTT | 58.609 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
295 | 296 | 7.764443 | TCAGCACTAAAGAAATATAAGAGCGTT | 59.236 | 33.333 | 0.00 | 0.00 | 0.00 | 4.84 |
296 | 297 | 7.265673 | TCAGCACTAAAGAAATATAAGAGCGT | 58.734 | 34.615 | 0.00 | 0.00 | 0.00 | 5.07 |
297 | 298 | 7.700322 | TCAGCACTAAAGAAATATAAGAGCG | 57.300 | 36.000 | 0.00 | 0.00 | 0.00 | 5.03 |
307 | 308 | 9.308318 | GGTTTGTTTATTTCAGCACTAAAGAAA | 57.692 | 29.630 | 0.00 | 0.00 | 35.92 | 2.52 |
308 | 309 | 8.691797 | AGGTTTGTTTATTTCAGCACTAAAGAA | 58.308 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
309 | 310 | 8.232913 | AGGTTTGTTTATTTCAGCACTAAAGA | 57.767 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
312 | 313 | 8.736244 | GGATAGGTTTGTTTATTTCAGCACTAA | 58.264 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
313 | 314 | 7.885922 | TGGATAGGTTTGTTTATTTCAGCACTA | 59.114 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
314 | 315 | 6.719370 | TGGATAGGTTTGTTTATTTCAGCACT | 59.281 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
315 | 316 | 6.919721 | TGGATAGGTTTGTTTATTTCAGCAC | 58.080 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
316 | 317 | 7.716799 | ATGGATAGGTTTGTTTATTTCAGCA | 57.283 | 32.000 | 0.00 | 0.00 | 0.00 | 4.41 |
317 | 318 | 8.034804 | ACAATGGATAGGTTTGTTTATTTCAGC | 58.965 | 33.333 | 0.00 | 0.00 | 29.60 | 4.26 |
318 | 319 | 9.573133 | GACAATGGATAGGTTTGTTTATTTCAG | 57.427 | 33.333 | 0.00 | 0.00 | 33.92 | 3.02 |
319 | 320 | 9.308000 | AGACAATGGATAGGTTTGTTTATTTCA | 57.692 | 29.630 | 0.00 | 0.00 | 33.92 | 2.69 |
320 | 321 | 9.788960 | GAGACAATGGATAGGTTTGTTTATTTC | 57.211 | 33.333 | 0.00 | 0.00 | 33.92 | 2.17 |
321 | 322 | 8.458843 | CGAGACAATGGATAGGTTTGTTTATTT | 58.541 | 33.333 | 0.00 | 0.00 | 33.92 | 1.40 |
322 | 323 | 7.827236 | TCGAGACAATGGATAGGTTTGTTTATT | 59.173 | 33.333 | 0.00 | 0.00 | 33.92 | 1.40 |
323 | 324 | 7.280205 | GTCGAGACAATGGATAGGTTTGTTTAT | 59.720 | 37.037 | 0.00 | 0.00 | 33.92 | 1.40 |
324 | 325 | 6.592607 | GTCGAGACAATGGATAGGTTTGTTTA | 59.407 | 38.462 | 0.00 | 0.00 | 33.92 | 2.01 |
325 | 326 | 5.411669 | GTCGAGACAATGGATAGGTTTGTTT | 59.588 | 40.000 | 0.00 | 0.00 | 33.92 | 2.83 |
326 | 327 | 4.935808 | GTCGAGACAATGGATAGGTTTGTT | 59.064 | 41.667 | 0.00 | 0.00 | 33.92 | 2.83 |
327 | 328 | 4.504858 | GTCGAGACAATGGATAGGTTTGT | 58.495 | 43.478 | 0.00 | 0.00 | 36.34 | 2.83 |
328 | 329 | 3.871594 | GGTCGAGACAATGGATAGGTTTG | 59.128 | 47.826 | 5.55 | 0.00 | 0.00 | 2.93 |
329 | 330 | 3.775316 | AGGTCGAGACAATGGATAGGTTT | 59.225 | 43.478 | 5.55 | 0.00 | 0.00 | 3.27 |
330 | 331 | 3.375699 | AGGTCGAGACAATGGATAGGTT | 58.624 | 45.455 | 5.55 | 0.00 | 0.00 | 3.50 |
331 | 332 | 2.959707 | GAGGTCGAGACAATGGATAGGT | 59.040 | 50.000 | 5.55 | 0.00 | 0.00 | 3.08 |
332 | 333 | 2.030717 | CGAGGTCGAGACAATGGATAGG | 60.031 | 54.545 | 5.55 | 0.00 | 43.02 | 2.57 |
333 | 334 | 2.619177 | ACGAGGTCGAGACAATGGATAG | 59.381 | 50.000 | 6.35 | 0.00 | 43.02 | 2.08 |
334 | 335 | 2.357952 | CACGAGGTCGAGACAATGGATA | 59.642 | 50.000 | 6.35 | 0.00 | 43.02 | 2.59 |
335 | 336 | 1.135139 | CACGAGGTCGAGACAATGGAT | 59.865 | 52.381 | 6.35 | 0.00 | 43.02 | 3.41 |
336 | 337 | 0.526211 | CACGAGGTCGAGACAATGGA | 59.474 | 55.000 | 6.35 | 0.00 | 43.02 | 3.41 |
337 | 338 | 1.078759 | GCACGAGGTCGAGACAATGG | 61.079 | 60.000 | 6.35 | 0.00 | 43.02 | 3.16 |
338 | 339 | 1.406219 | CGCACGAGGTCGAGACAATG | 61.406 | 60.000 | 6.35 | 0.00 | 43.02 | 2.82 |
339 | 340 | 1.154016 | CGCACGAGGTCGAGACAAT | 60.154 | 57.895 | 6.35 | 0.00 | 43.02 | 2.71 |
340 | 341 | 2.254350 | CGCACGAGGTCGAGACAA | 59.746 | 61.111 | 6.35 | 0.00 | 43.02 | 3.18 |
341 | 342 | 4.400109 | GCGCACGAGGTCGAGACA | 62.400 | 66.667 | 0.30 | 0.00 | 43.02 | 3.41 |
357 | 358 | 3.993234 | CATGATCGTCAGCGGCGC | 61.993 | 66.667 | 26.86 | 26.86 | 38.89 | 6.53 |
358 | 359 | 3.993234 | GCATGATCGTCAGCGGCG | 61.993 | 66.667 | 0.51 | 0.51 | 38.89 | 6.46 |
359 | 360 | 3.643978 | GGCATGATCGTCAGCGGC | 61.644 | 66.667 | 0.00 | 0.00 | 38.89 | 6.53 |
360 | 361 | 2.969238 | GGGCATGATCGTCAGCGG | 60.969 | 66.667 | 0.00 | 0.00 | 38.89 | 5.52 |
361 | 362 | 2.969238 | GGGGCATGATCGTCAGCG | 60.969 | 66.667 | 0.00 | 0.00 | 39.92 | 5.18 |
362 | 363 | 1.890979 | CAGGGGCATGATCGTCAGC | 60.891 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
363 | 364 | 1.890979 | GCAGGGGCATGATCGTCAG | 60.891 | 63.158 | 0.00 | 0.00 | 40.72 | 3.51 |
364 | 365 | 2.190313 | GCAGGGGCATGATCGTCA | 59.810 | 61.111 | 0.00 | 0.00 | 40.72 | 4.35 |
365 | 366 | 2.592861 | GGCAGGGGCATGATCGTC | 60.593 | 66.667 | 0.00 | 0.00 | 43.71 | 4.20 |
366 | 367 | 3.092511 | AGGCAGGGGCATGATCGT | 61.093 | 61.111 | 0.00 | 0.00 | 43.71 | 3.73 |
367 | 368 | 2.281345 | GAGGCAGGGGCATGATCG | 60.281 | 66.667 | 0.00 | 0.00 | 43.71 | 3.69 |
368 | 369 | 2.281345 | CGAGGCAGGGGCATGATC | 60.281 | 66.667 | 0.00 | 0.00 | 43.71 | 2.92 |
369 | 370 | 3.092511 | ACGAGGCAGGGGCATGAT | 61.093 | 61.111 | 0.00 | 0.00 | 43.71 | 2.45 |
370 | 371 | 3.785859 | GACGAGGCAGGGGCATGA | 61.786 | 66.667 | 0.00 | 0.00 | 43.71 | 3.07 |
376 | 377 | 3.958147 | AATGTGCGACGAGGCAGGG | 62.958 | 63.158 | 0.00 | 0.00 | 44.93 | 4.45 |
377 | 378 | 1.970917 | GAAATGTGCGACGAGGCAGG | 61.971 | 60.000 | 0.00 | 0.00 | 44.93 | 4.85 |
378 | 379 | 1.291184 | TGAAATGTGCGACGAGGCAG | 61.291 | 55.000 | 0.00 | 0.00 | 44.93 | 4.85 |
379 | 380 | 1.291184 | CTGAAATGTGCGACGAGGCA | 61.291 | 55.000 | 0.00 | 1.17 | 41.45 | 4.75 |
380 | 381 | 1.014044 | TCTGAAATGTGCGACGAGGC | 61.014 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
381 | 382 | 1.126846 | GTTCTGAAATGTGCGACGAGG | 59.873 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
382 | 383 | 1.201704 | CGTTCTGAAATGTGCGACGAG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
383 | 384 | 0.781787 | CGTTCTGAAATGTGCGACGA | 59.218 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
384 | 385 | 0.179250 | CCGTTCTGAAATGTGCGACG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
385 | 386 | 1.144969 | TCCGTTCTGAAATGTGCGAC | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
386 | 387 | 1.529438 | GTTCCGTTCTGAAATGTGCGA | 59.471 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
387 | 388 | 1.721489 | CGTTCCGTTCTGAAATGTGCG | 60.721 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
388 | 389 | 1.399727 | CCGTTCCGTTCTGAAATGTGC | 60.400 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
389 | 390 | 1.196808 | CCCGTTCCGTTCTGAAATGTG | 59.803 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
390 | 391 | 1.519408 | CCCGTTCCGTTCTGAAATGT | 58.481 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
391 | 392 | 0.802494 | CCCCGTTCCGTTCTGAAATG | 59.198 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
392 | 393 | 0.688487 | TCCCCGTTCCGTTCTGAAAT | 59.312 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
393 | 394 | 0.249996 | GTCCCCGTTCCGTTCTGAAA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
394 | 395 | 1.368579 | GTCCCCGTTCCGTTCTGAA | 59.631 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
395 | 396 | 1.401318 | TTGTCCCCGTTCCGTTCTGA | 61.401 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
396 | 397 | 0.533308 | TTTGTCCCCGTTCCGTTCTG | 60.533 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
397 | 398 | 0.180878 | TTTTGTCCCCGTTCCGTTCT | 59.819 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
398 | 399 | 0.308684 | GTTTTGTCCCCGTTCCGTTC | 59.691 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
399 | 400 | 1.438562 | CGTTTTGTCCCCGTTCCGTT | 61.439 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
400 | 401 | 1.888638 | CGTTTTGTCCCCGTTCCGT | 60.889 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
401 | 402 | 2.940561 | CGTTTTGTCCCCGTTCCG | 59.059 | 61.111 | 0.00 | 0.00 | 0.00 | 4.30 |
402 | 403 | 1.726533 | TTGCGTTTTGTCCCCGTTCC | 61.727 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
403 | 404 | 0.593008 | GTTGCGTTTTGTCCCCGTTC | 60.593 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
404 | 405 | 1.033202 | AGTTGCGTTTTGTCCCCGTT | 61.033 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
405 | 406 | 1.033202 | AAGTTGCGTTTTGTCCCCGT | 61.033 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
406 | 407 | 0.317519 | GAAGTTGCGTTTTGTCCCCG | 60.318 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
407 | 408 | 0.741915 | TGAAGTTGCGTTTTGTCCCC | 59.258 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
408 | 409 | 2.570442 | TTGAAGTTGCGTTTTGTCCC | 57.430 | 45.000 | 0.00 | 0.00 | 0.00 | 4.46 |
409 | 410 | 4.328712 | ACATTTTGAAGTTGCGTTTTGTCC | 59.671 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
430 | 431 | 9.806203 | TTAGGTCTTCGAATCGAAAATATAACA | 57.194 | 29.630 | 18.99 | 0.00 | 45.23 | 2.41 |
436 | 437 | 7.668525 | ACTTTTAGGTCTTCGAATCGAAAAT | 57.331 | 32.000 | 18.99 | 7.82 | 45.23 | 1.82 |
445 | 446 | 4.505191 | CGTCAACAACTTTTAGGTCTTCGA | 59.495 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
446 | 447 | 4.318546 | CCGTCAACAACTTTTAGGTCTTCG | 60.319 | 45.833 | 0.00 | 0.00 | 0.00 | 3.79 |
455 | 456 | 4.993029 | TTCCATTCCGTCAACAACTTTT | 57.007 | 36.364 | 0.00 | 0.00 | 0.00 | 2.27 |
487 | 488 | 3.258622 | GGGGTATATTTCCTCGGAGACTG | 59.741 | 52.174 | 6.58 | 0.00 | 0.00 | 3.51 |
518 | 519 | 3.348119 | GAACAAGGAAAGGAGATGGGAC | 58.652 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
536 | 537 | 0.247460 | GCCTTCTTTGCCCATGGAAC | 59.753 | 55.000 | 15.22 | 5.44 | 0.00 | 3.62 |
541 | 542 | 2.105766 | GAAGATGCCTTCTTTGCCCAT | 58.894 | 47.619 | 1.04 | 0.00 | 44.88 | 4.00 |
551 | 552 | 0.877071 | CAGCAACACGAAGATGCCTT | 59.123 | 50.000 | 10.15 | 0.00 | 40.93 | 4.35 |
619 | 621 | 3.383185 | GGAGTGCAGTAGAAGCTACAGAT | 59.617 | 47.826 | 7.29 | 0.00 | 0.00 | 2.90 |
639 | 645 | 2.768344 | GGGATGAAGAGCCCGGGA | 60.768 | 66.667 | 29.31 | 0.71 | 38.31 | 5.14 |
676 | 691 | 1.573108 | TAAAGGACAGGAGAGCTGGG | 58.427 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
688 | 710 | 3.090037 | GGGAGGGAGCTTTTTAAAGGAC | 58.910 | 50.000 | 4.54 | 0.00 | 36.53 | 3.85 |
735 | 757 | 1.515304 | GAAGAGGCGTGAGTCGAGC | 60.515 | 63.158 | 1.46 | 1.46 | 43.49 | 5.03 |
748 | 770 | 1.743252 | GACTGGCGCCAAGGAAGAG | 60.743 | 63.158 | 32.09 | 19.23 | 0.00 | 2.85 |
922 | 981 | 1.263217 | ACGCACGGTTTCTTTAGCTTG | 59.737 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
947 | 1006 | 2.642171 | TGGAGTTATGGACAGGGAGT | 57.358 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
955 | 1014 | 3.197766 | GGCGATGGATATGGAGTTATGGA | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
956 | 1015 | 3.055167 | TGGCGATGGATATGGAGTTATGG | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
957 | 1016 | 4.206477 | TGGCGATGGATATGGAGTTATG | 57.794 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
958 | 1017 | 4.774124 | CATGGCGATGGATATGGAGTTAT | 58.226 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
959 | 1018 | 4.206477 | CATGGCGATGGATATGGAGTTA | 57.794 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
960 | 1019 | 3.063510 | CATGGCGATGGATATGGAGTT | 57.936 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
961 | 1020 | 2.775911 | CATGGCGATGGATATGGAGT | 57.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
989 | 1051 | 1.786937 | CAGGGACATAGCACTCTCCT | 58.213 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1037 | 1102 | 2.535331 | CTCCTCTCTTAGTTTCTGCGC | 58.465 | 52.381 | 0.00 | 0.00 | 0.00 | 6.09 |
1039 | 1104 | 2.169561 | CCCCTCCTCTCTTAGTTTCTGC | 59.830 | 54.545 | 0.00 | 0.00 | 0.00 | 4.26 |
1055 | 1120 | 3.617775 | CGAAAGAGTTTCTTCTCCCCCTC | 60.618 | 52.174 | 0.00 | 0.00 | 35.27 | 4.30 |
1062 | 1127 | 4.152284 | ACAACCCGAAAGAGTTTCTTCT | 57.848 | 40.909 | 0.00 | 0.00 | 35.27 | 2.85 |
1287 | 1377 | 0.105194 | TGGAACTCACCTCCCAGACA | 60.105 | 55.000 | 0.00 | 0.00 | 31.32 | 3.41 |
1309 | 1399 | 0.034186 | AAAGCAGGCGATGGATGGAA | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1324 | 1419 | 5.098211 | GGATTATGAAACACAGAGCAAAGC | 58.902 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1325 | 1420 | 5.327091 | CGGATTATGAAACACAGAGCAAAG | 58.673 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
1326 | 1421 | 4.379394 | GCGGATTATGAAACACAGAGCAAA | 60.379 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
1327 | 1422 | 3.126858 | GCGGATTATGAAACACAGAGCAA | 59.873 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
1329 | 1424 | 2.939103 | AGCGGATTATGAAACACAGAGC | 59.061 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
1331 | 1426 | 3.270027 | CCAGCGGATTATGAAACACAGA | 58.730 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1334 | 1429 | 2.017049 | AGCCAGCGGATTATGAAACAC | 58.983 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
1337 | 1432 | 1.024271 | GCAGCCAGCGGATTATGAAA | 58.976 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1348 | 1443 | 4.806571 | CATCAACATGCAGCCAGC | 57.193 | 55.556 | 0.00 | 0.00 | 45.96 | 4.85 |
1384 | 1753 | 8.559536 | ACTATTATAAAGTCACCAATGATTGCG | 58.440 | 33.333 | 0.00 | 0.00 | 37.14 | 4.85 |
1402 | 1771 | 8.323854 | CGTCGCTAATTCGCTACTACTATTATA | 58.676 | 37.037 | 5.31 | 0.00 | 0.00 | 0.98 |
1405 | 1774 | 5.178252 | TCGTCGCTAATTCGCTACTACTATT | 59.822 | 40.000 | 5.31 | 0.00 | 0.00 | 1.73 |
1439 | 1809 | 7.344093 | TGAGAATCTCCAAGTCAGTGAGAATAT | 59.656 | 37.037 | 7.91 | 0.00 | 38.53 | 1.28 |
1442 | 1812 | 4.835056 | TGAGAATCTCCAAGTCAGTGAGAA | 59.165 | 41.667 | 7.91 | 0.00 | 38.53 | 2.87 |
1443 | 1813 | 4.411013 | TGAGAATCTCCAAGTCAGTGAGA | 58.589 | 43.478 | 7.91 | 0.00 | 39.31 | 3.27 |
1444 | 1814 | 4.797800 | TGAGAATCTCCAAGTCAGTGAG | 57.202 | 45.455 | 7.91 | 0.00 | 34.92 | 3.51 |
1446 | 1816 | 6.047870 | CCTTATGAGAATCTCCAAGTCAGTG | 58.952 | 44.000 | 7.91 | 0.00 | 34.92 | 3.66 |
1450 | 1820 | 6.883744 | AGTTCCTTATGAGAATCTCCAAGTC | 58.116 | 40.000 | 7.91 | 4.86 | 34.92 | 3.01 |
1454 | 1824 | 7.979786 | ACTAAGTTCCTTATGAGAATCTCCA | 57.020 | 36.000 | 7.91 | 0.00 | 34.92 | 3.86 |
1518 | 1976 | 3.153919 | GTTACAGCAATGAGGGGACAAA | 58.846 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
1519 | 1977 | 2.554344 | GGTTACAGCAATGAGGGGACAA | 60.554 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1538 | 1996 | 6.732896 | TTCTAGACTTCTTCTTCAACAGGT | 57.267 | 37.500 | 0.00 | 0.00 | 35.55 | 4.00 |
1551 | 2009 | 7.757624 | CAGTGGTCAGAAACTATTCTAGACTTC | 59.242 | 40.741 | 0.00 | 0.00 | 44.11 | 3.01 |
1596 | 2115 | 1.827969 | GGCAGACTGAGACAGGTACAT | 59.172 | 52.381 | 6.65 | 0.00 | 35.51 | 2.29 |
1597 | 2116 | 1.203063 | AGGCAGACTGAGACAGGTACA | 60.203 | 52.381 | 6.65 | 0.00 | 35.51 | 2.90 |
1598 | 2117 | 1.551452 | AGGCAGACTGAGACAGGTAC | 58.449 | 55.000 | 6.65 | 0.00 | 35.51 | 3.34 |
1600 | 2119 | 4.963944 | AGGCAGACTGAGACAGGT | 57.036 | 55.556 | 6.65 | 0.00 | 35.51 | 4.00 |
1609 | 2128 | 1.055040 | GCCCATATCTCAGGCAGACT | 58.945 | 55.000 | 0.00 | 0.00 | 46.34 | 3.24 |
1615 | 2134 | 1.698532 | AGCTGAAGCCCATATCTCAGG | 59.301 | 52.381 | 0.00 | 0.00 | 43.38 | 3.86 |
1630 | 2164 | 1.380515 | CGAAGGGGGAGAGAGCTGA | 60.381 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
1631 | 2165 | 1.261238 | AACGAAGGGGGAGAGAGCTG | 61.261 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1632 | 2166 | 0.545548 | AAACGAAGGGGGAGAGAGCT | 60.546 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1633 | 2167 | 0.391793 | CAAACGAAGGGGGAGAGAGC | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1634 | 2168 | 0.391793 | GCAAACGAAGGGGGAGAGAG | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1708 | 2267 | 5.352284 | ACAACAGAACTGTACTGAAGAGTG | 58.648 | 41.667 | 7.90 | 2.59 | 44.13 | 3.51 |
1725 | 2284 | 0.378257 | ACTTGTCGCAGCAACAACAG | 59.622 | 50.000 | 0.00 | 0.00 | 33.30 | 3.16 |
1755 | 2317 | 4.395231 | CACAACGACATACTGAGTCTAGGA | 59.605 | 45.833 | 0.00 | 0.00 | 33.89 | 2.94 |
1757 | 2319 | 4.099120 | GCACAACGACATACTGAGTCTAG | 58.901 | 47.826 | 0.00 | 0.00 | 33.89 | 2.43 |
1911 | 2806 | 1.856265 | CTCGGTTGGGCACTTTGCTC | 61.856 | 60.000 | 0.00 | 0.00 | 46.11 | 4.26 |
1923 | 2818 | 2.093973 | AGACTACCTCATTGCTCGGTTG | 60.094 | 50.000 | 0.00 | 0.00 | 32.36 | 3.77 |
2157 | 3215 | 4.213482 | CCTAACACCTTTTTCTCTCCAACG | 59.787 | 45.833 | 0.00 | 0.00 | 0.00 | 4.10 |
2199 | 3272 | 3.688694 | AACGACCCAAGCTACACATTA | 57.311 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
2217 | 3290 | 4.508124 | CGCAGTCATAACCTCTTGGATAAC | 59.492 | 45.833 | 0.00 | 0.00 | 37.04 | 1.89 |
2259 | 3390 | 3.411446 | TCATGCAACCTGTCTTTGGTAG | 58.589 | 45.455 | 0.00 | 0.00 | 36.69 | 3.18 |
2299 | 4059 | 5.854010 | ATTAGAGATGTACGGCTTGAGAA | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
2300 | 4060 | 5.221263 | GGAATTAGAGATGTACGGCTTGAGA | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2301 | 4061 | 4.985409 | GGAATTAGAGATGTACGGCTTGAG | 59.015 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
2302 | 4062 | 4.649674 | AGGAATTAGAGATGTACGGCTTGA | 59.350 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2303 | 4063 | 4.950050 | AGGAATTAGAGATGTACGGCTTG | 58.050 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
2305 | 4065 | 5.386924 | ACTAGGAATTAGAGATGTACGGCT | 58.613 | 41.667 | 0.00 | 0.00 | 33.39 | 5.52 |
2307 | 4067 | 7.273320 | TGAACTAGGAATTAGAGATGTACGG | 57.727 | 40.000 | 0.00 | 0.00 | 33.39 | 4.02 |
2376 | 4597 | 4.580995 | TCGGTTTGGCTATTTTGAACTTGA | 59.419 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2422 | 4672 | 4.600062 | AGGAGAAAACCACAGAACAAGTT | 58.400 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
2597 | 4853 | 0.888619 | TCTTCTCGCCGTTGATGAGT | 59.111 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2604 | 4860 | 0.389166 | CAGAGCTTCTTCTCGCCGTT | 60.389 | 55.000 | 0.00 | 0.00 | 38.12 | 4.44 |
2745 | 5004 | 2.355108 | CCATCGTGTCACCCTTCTTGAT | 60.355 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2899 | 5158 | 0.592637 | CCAAGAATGCTGAACGTGCA | 59.407 | 50.000 | 0.00 | 0.00 | 44.95 | 4.57 |
2904 | 5163 | 0.804989 | CCGTCCCAAGAATGCTGAAC | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2996 | 5290 | 2.747822 | GCTCGTCCTCGTCGCAGTA | 61.748 | 63.158 | 0.00 | 0.00 | 38.33 | 2.74 |
3178 | 5472 | 2.438795 | GGTTGGCTGCTTACCCCA | 59.561 | 61.111 | 11.11 | 0.00 | 0.00 | 4.96 |
3230 | 5550 | 0.246360 | ACGACCATCAGACGATGCAA | 59.754 | 50.000 | 0.00 | 0.00 | 46.59 | 4.08 |
3237 | 5557 | 3.181520 | CCATTTTTCGACGACCATCAGAC | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3319 | 5639 | 4.214327 | GCCGCCTTCTCCCTCTCG | 62.214 | 72.222 | 0.00 | 0.00 | 0.00 | 4.04 |
3487 | 5807 | 0.602905 | AGGACGGGCGTTTTCTCTTG | 60.603 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3554 | 5882 | 3.610114 | GCGTTGTGATTTGCTGTGATCTT | 60.610 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
3612 | 5952 | 2.662150 | GGAGATTTTCCGACCGTCG | 58.338 | 57.895 | 14.15 | 14.15 | 40.07 | 5.12 |
3629 | 5969 | 1.134946 | GATTCTCGTGCATTTTGGGGG | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
3695 | 6036 | 0.981183 | AGACGGAGGCATACACCAAA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
3697 | 6038 | 0.324368 | AGAGACGGAGGCATACACCA | 60.324 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3698 | 6039 | 0.103208 | CAGAGACGGAGGCATACACC | 59.897 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3732 | 6073 | 2.995466 | ACAAGGCAATGATTGTGACG | 57.005 | 45.000 | 7.05 | 0.00 | 38.19 | 4.35 |
3749 | 6093 | 7.659390 | TGTTGTGATTGATGTACACAGATAACA | 59.341 | 33.333 | 0.00 | 0.00 | 43.62 | 2.41 |
3750 | 6094 | 8.028540 | TGTTGTGATTGATGTACACAGATAAC | 57.971 | 34.615 | 0.00 | 0.00 | 43.62 | 1.89 |
3751 | 6095 | 7.334171 | CCTGTTGTGATTGATGTACACAGATAA | 59.666 | 37.037 | 0.00 | 0.00 | 43.62 | 1.75 |
3756 | 6100 | 4.071423 | CCCTGTTGTGATTGATGTACACA | 58.929 | 43.478 | 0.00 | 0.00 | 41.70 | 3.72 |
3793 | 6137 | 1.199624 | GCAAATTATCGGCGCCAAAG | 58.800 | 50.000 | 28.98 | 10.81 | 0.00 | 2.77 |
3826 | 6170 | 7.440556 | GCTTCAGTGCAGAATATCTAAGATTGA | 59.559 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3898 | 6242 | 0.317160 | TGTGTGACTGCTTCCTACCG | 59.683 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3942 | 6286 | 0.798776 | GATGACTTTCACGGCCACAG | 59.201 | 55.000 | 2.24 | 0.00 | 0.00 | 3.66 |
3954 | 6298 | 1.202154 | CGGCTAACTCGACGATGACTT | 60.202 | 52.381 | 0.00 | 0.00 | 37.71 | 3.01 |
4148 | 6492 | 1.147600 | GACCACCTCACACGGGTTT | 59.852 | 57.895 | 0.00 | 0.00 | 34.44 | 3.27 |
4149 | 6493 | 2.826702 | GACCACCTCACACGGGTT | 59.173 | 61.111 | 0.00 | 0.00 | 34.44 | 4.11 |
4164 | 6508 | 2.989840 | CCGATCCTTCTGATATTGCGAC | 59.010 | 50.000 | 0.00 | 0.00 | 32.41 | 5.19 |
4203 | 6547 | 8.093659 | TCTATCGAACTGTCTCTATCATCAAG | 57.906 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
4204 | 6548 | 8.451908 | TTCTATCGAACTGTCTCTATCATCAA | 57.548 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4211 | 6570 | 5.971792 | CGCATTTTCTATCGAACTGTCTCTA | 59.028 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4222 | 6581 | 4.850859 | TGTACCAACGCATTTTCTATCG | 57.149 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
4232 | 6591 | 4.325028 | TTCTAGTTCTTGTACCAACGCA | 57.675 | 40.909 | 0.00 | 0.00 | 0.00 | 5.24 |
4401 | 6763 | 5.713389 | TCCACCGAGACACCGATTATTATAT | 59.287 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
4416 | 6778 | 1.070134 | CACCTTTGAACTCCACCGAGA | 59.930 | 52.381 | 0.00 | 0.00 | 38.52 | 4.04 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.