Multiple sequence alignment - TraesCS1A01G227500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G227500 chr1A 100.000 5809 0 0 1 5809 398133708 398139516 0.000000e+00 10728
1 TraesCS1A01G227500 chr1A 88.685 327 35 2 5228 5552 98241768 98242094 1.170000e-106 398
2 TraesCS1A01G227500 chr1A 79.870 154 29 2 4108 4260 532433504 532433656 1.710000e-20 111
3 TraesCS1A01G227500 chr1B 96.392 2273 77 3 2964 5233 429281835 429284105 0.000000e+00 3738
4 TraesCS1A01G227500 chr1B 93.591 983 49 7 1727 2703 429280434 429281408 0.000000e+00 1454
5 TraesCS1A01G227500 chr1B 89.167 720 33 16 925 1641 429279759 429280436 0.000000e+00 856
6 TraesCS1A01G227500 chr1B 85.024 621 59 18 128 738 429279076 429279672 8.330000e-168 601
7 TraesCS1A01G227500 chr1B 79.965 569 96 13 2036 2597 429585047 429585604 2.520000e-108 403
8 TraesCS1A01G227500 chr1B 87.000 300 20 7 1 281 429277499 429277798 2.610000e-83 320
9 TraesCS1A01G227500 chr1B 91.630 227 11 2 5583 5808 429284123 429284342 2.030000e-79 307
10 TraesCS1A01G227500 chr1B 80.519 154 28 2 4108 4260 587975683 587975835 3.680000e-22 117
11 TraesCS1A01G227500 chr1B 78.571 154 31 2 4108 4260 587824230 587824382 3.700000e-17 100
12 TraesCS1A01G227500 chr1D 95.767 2268 91 2 2966 5233 317191367 317193629 0.000000e+00 3651
13 TraesCS1A01G227500 chr1D 90.472 2246 179 18 2966 5201 317183851 317186071 0.000000e+00 2929
14 TraesCS1A01G227500 chr1D 82.669 1956 274 41 3091 5037 317390327 317388428 0.000000e+00 1674
15 TraesCS1A01G227500 chr1D 88.114 1262 78 28 1727 2965 317182569 317183781 0.000000e+00 1434
16 TraesCS1A01G227500 chr1D 87.876 1262 84 32 1727 2965 317190000 317191215 0.000000e+00 1419
17 TraesCS1A01G227500 chr1D 93.164 746 38 8 902 1641 317189264 317190002 0.000000e+00 1083
18 TraesCS1A01G227500 chr1D 85.112 759 43 13 892 1641 317181874 317182571 0.000000e+00 712
19 TraesCS1A01G227500 chr1D 82.775 865 76 22 1 844 317181066 317181878 0.000000e+00 704
20 TraesCS1A01G227500 chr1D 88.199 322 34 3 5233 5552 481307714 481308033 1.180000e-101 381
21 TraesCS1A01G227500 chr1D 87.578 322 36 3 5233 5552 481140911 481141230 2.560000e-98 370
22 TraesCS1A01G227500 chr1D 92.278 259 12 2 5551 5808 317193626 317193877 1.540000e-95 361
23 TraesCS1A01G227500 chr1D 81.169 154 27 2 4108 4260 434268395 434268547 7.900000e-24 122
24 TraesCS1A01G227500 chr4D 89.720 321 31 2 5233 5552 502379981 502380300 5.420000e-110 409
25 TraesCS1A01G227500 chr6B 88.615 325 35 2 5230 5552 579886206 579886530 1.520000e-105 394
26 TraesCS1A01G227500 chr7A 88.344 326 37 1 5230 5554 690433976 690434301 1.960000e-104 390
27 TraesCS1A01G227500 chr7A 87.500 328 32 8 5230 5554 729948559 729948238 2.560000e-98 370
28 TraesCS1A01G227500 chr4A 87.539 321 39 1 5233 5552 709857520 709857200 2.560000e-98 370
29 TraesCS1A01G227500 chr4A 86.850 327 39 4 5233 5557 674912801 674912477 4.280000e-96 363
30 TraesCS1A01G227500 chr4A 84.762 105 10 2 1633 1737 599784499 599784401 3.700000e-17 100
31 TraesCS1A01G227500 chr3D 89.691 97 5 1 1634 1730 253553895 253553804 1.020000e-22 119
32 TraesCS1A01G227500 chr6D 90.217 92 5 1 1639 1730 462439496 462439583 3.680000e-22 117
33 TraesCS1A01G227500 chr2A 87.736 106 6 3 1632 1737 591749099 591749001 3.680000e-22 117
34 TraesCS1A01G227500 chr2A 89.888 89 6 2 1640 1728 656952130 656952215 1.710000e-20 111
35 TraesCS1A01G227500 chr2A 88.421 95 6 2 1639 1733 361381618 361381707 6.150000e-20 110
36 TraesCS1A01G227500 chr7D 87.755 98 10 2 1633 1730 604995493 604995588 4.760000e-21 113
37 TraesCS1A01G227500 chr3B 90.000 90 4 1 1640 1729 51027186 51027102 1.710000e-20 111
38 TraesCS1A01G227500 chr3B 88.172 93 6 2 1637 1729 52742846 52742933 7.960000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G227500 chr1A 398133708 398139516 5808 False 10728.000000 10728 100.000000 1 5809 1 chr1A.!!$F2 5808
1 TraesCS1A01G227500 chr1B 429277499 429284342 6843 False 1212.666667 3738 90.467333 1 5808 6 chr1B.!!$F4 5807
2 TraesCS1A01G227500 chr1B 429585047 429585604 557 False 403.000000 403 79.965000 2036 2597 1 chr1B.!!$F1 561
3 TraesCS1A01G227500 chr1D 317388428 317390327 1899 True 1674.000000 1674 82.669000 3091 5037 1 chr1D.!!$R1 1946
4 TraesCS1A01G227500 chr1D 317181066 317193877 12811 False 1536.625000 3651 89.444750 1 5808 8 chr1D.!!$F4 5807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 1986 0.179056 ACCACGACCACAACAAGAGG 60.179 55.0 0.00 0.0 0.00 3.69 F
871 2377 0.179163 CCCGAGCCATTTCGCTTTTC 60.179 55.0 0.00 0.0 39.87 2.29 F
918 2424 0.179200 GCCATTTCGCCGTGTAACTG 60.179 55.0 0.00 0.0 31.75 3.16 F
919 2425 0.179200 CCATTTCGCCGTGTAACTGC 60.179 55.0 0.00 0.0 44.14 4.40 F
1255 10162 0.862283 GGTTCGTGTCTCGCTCGATC 60.862 60.0 0.00 0.0 41.75 3.69 F
2858 11888 0.249073 CGTGGCTTCGTGCTAGCTAT 60.249 55.0 17.23 0.0 42.39 2.97 F
4006 13205 0.946221 GGGCTCACTGACAGACAACG 60.946 60.0 10.08 0.0 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2408 11336 0.249911 AACTCACCTGTCGCTCAACC 60.250 55.000 0.00 0.00 0.00 3.77 R
2777 11804 0.036952 ACTTGCAGATCAGTCACGGG 60.037 55.000 0.00 0.00 0.00 5.28 R
2778 11805 1.337167 TGACTTGCAGATCAGTCACGG 60.337 52.381 13.67 0.00 36.51 4.94 R
2843 11873 3.363341 AGAAGATAGCTAGCACGAAGC 57.637 47.619 18.83 1.92 46.19 3.86 R
3125 12324 3.004734 CAGTTTGGGATCGTTCAAAGCTT 59.995 43.478 0.00 0.00 34.11 3.74 R
4074 13273 0.721718 GTCAGTGTATGCTTCGTGGC 59.278 55.000 0.00 0.00 0.00 5.01 R
5438 14640 0.039617 TTCGCAGATGCCCAAAAACG 60.040 50.000 0.00 0.00 37.91 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.787551 TCCAAATATTCGTAAGGGTGCAT 58.212 39.130 0.00 0.00 38.47 3.96
82 83 4.414852 CGTGAGCCATTGGATTTGTTAAG 58.585 43.478 6.95 0.00 0.00 1.85
83 84 4.176271 GTGAGCCATTGGATTTGTTAAGC 58.824 43.478 6.95 0.00 0.00 3.09
84 85 3.831333 TGAGCCATTGGATTTGTTAAGCA 59.169 39.130 6.95 0.00 0.00 3.91
85 86 4.282957 TGAGCCATTGGATTTGTTAAGCAA 59.717 37.500 6.95 0.00 34.87 3.91
105 117 1.632409 ACTCTGATGTGGTGAAGGCAT 59.368 47.619 0.00 0.00 0.00 4.40
108 120 0.251253 TGATGTGGTGAAGGCATGCA 60.251 50.000 21.36 0.00 0.00 3.96
148 160 6.250819 CAATCGTTGAATAACATCAGACACC 58.749 40.000 0.00 0.00 36.58 4.16
258 278 2.162208 CGAGTATTTTGCAGCACACCAT 59.838 45.455 0.00 0.00 0.00 3.55
287 1746 6.816134 TTGCAACACAATGTCTGTATGTAT 57.184 33.333 0.00 0.00 36.10 2.29
296 1755 8.071967 CACAATGTCTGTATGTATGCAATAAGG 58.928 37.037 0.00 0.00 36.10 2.69
301 1760 9.407380 TGTCTGTATGTATGCAATAAGGAAATT 57.593 29.630 0.00 0.00 0.00 1.82
305 1764 9.800433 TGTATGTATGCAATAAGGAAATTTGTG 57.200 29.630 0.00 0.00 0.00 3.33
313 1772 2.138596 AGGAAATTTGTGTGCTTGCG 57.861 45.000 0.00 0.00 0.00 4.85
380 1839 2.693797 ATCTCGCAGCAACAAAGTTG 57.306 45.000 5.56 5.56 0.00 3.16
513 1972 2.369629 AAATGCGACGACGACCACG 61.370 57.895 12.29 3.09 42.66 4.94
518 1977 2.428071 GACGACGACCACGACCAC 60.428 66.667 0.00 0.00 42.66 4.16
519 1978 3.185082 GACGACGACCACGACCACA 62.185 63.158 0.00 0.00 42.66 4.17
520 1979 2.026445 CGACGACCACGACCACAA 59.974 61.111 0.00 0.00 42.66 3.33
521 1980 2.297912 CGACGACCACGACCACAAC 61.298 63.158 0.00 0.00 42.66 3.32
522 1981 1.227031 GACGACCACGACCACAACA 60.227 57.895 0.00 0.00 42.66 3.33
523 1982 0.806884 GACGACCACGACCACAACAA 60.807 55.000 0.00 0.00 42.66 2.83
524 1983 0.808453 ACGACCACGACCACAACAAG 60.808 55.000 0.00 0.00 42.66 3.16
525 1984 0.528901 CGACCACGACCACAACAAGA 60.529 55.000 0.00 0.00 42.66 3.02
526 1985 1.217882 GACCACGACCACAACAAGAG 58.782 55.000 0.00 0.00 0.00 2.85
527 1986 0.179056 ACCACGACCACAACAAGAGG 60.179 55.000 0.00 0.00 0.00 3.69
528 1987 0.884704 CCACGACCACAACAAGAGGG 60.885 60.000 0.00 0.00 31.39 4.30
529 1988 0.884704 CACGACCACAACAAGAGGGG 60.885 60.000 0.00 0.00 31.39 4.79
530 1989 1.966451 CGACCACAACAAGAGGGGC 60.966 63.158 0.00 0.00 31.39 5.80
531 1990 1.150536 GACCACAACAAGAGGGGCA 59.849 57.895 0.00 0.00 31.39 5.36
601 2065 3.934457 AACGGTAGCAAAATTCCTTGG 57.066 42.857 0.00 0.00 0.00 3.61
609 2073 2.305635 GCAAAATTCCTTGGGGGTCAAT 59.694 45.455 0.00 0.00 34.45 2.57
618 2082 2.826674 TGGGGGTCAATGAGATTTCC 57.173 50.000 0.00 0.00 0.00 3.13
725 2190 8.020861 TGTAGCGGTACAAAACTGTAAAATAG 57.979 34.615 24.19 0.00 36.15 1.73
726 2191 5.934921 AGCGGTACAAAACTGTAAAATAGC 58.065 37.500 0.00 0.00 36.77 2.97
727 2192 5.470777 AGCGGTACAAAACTGTAAAATAGCA 59.529 36.000 0.00 0.00 36.77 3.49
728 2193 5.793457 GCGGTACAAAACTGTAAAATAGCAG 59.207 40.000 0.00 0.00 36.77 4.24
729 2194 6.311723 CGGTACAAAACTGTAAAATAGCAGG 58.688 40.000 0.00 0.00 37.07 4.85
730 2195 6.090783 GGTACAAAACTGTAAAATAGCAGGC 58.909 40.000 0.00 0.00 37.07 4.85
731 2196 5.134202 ACAAAACTGTAAAATAGCAGGCC 57.866 39.130 0.00 0.00 37.07 5.19
732 2197 4.586841 ACAAAACTGTAAAATAGCAGGCCA 59.413 37.500 5.01 0.00 37.07 5.36
733 2198 5.163513 CAAAACTGTAAAATAGCAGGCCAG 58.836 41.667 5.01 0.00 37.07 4.85
734 2199 3.721087 ACTGTAAAATAGCAGGCCAGT 57.279 42.857 5.01 0.00 37.07 4.00
735 2200 4.034285 ACTGTAAAATAGCAGGCCAGTT 57.966 40.909 5.01 0.00 37.07 3.16
736 2201 4.407365 ACTGTAAAATAGCAGGCCAGTTT 58.593 39.130 5.01 0.00 37.07 2.66
737 2202 4.832823 ACTGTAAAATAGCAGGCCAGTTTT 59.167 37.500 5.01 7.12 37.07 2.43
738 2203 5.304357 ACTGTAAAATAGCAGGCCAGTTTTT 59.696 36.000 5.01 8.02 37.07 1.94
781 2246 0.804989 GTTTTGGTGGAGCGATCTGG 59.195 55.000 0.00 0.00 0.00 3.86
784 2249 2.764128 GGTGGAGCGATCTGGGGA 60.764 66.667 0.00 0.00 0.00 4.81
844 2350 2.756042 CCGGCATCTCCCCATTCCA 61.756 63.158 0.00 0.00 0.00 3.53
845 2351 1.526917 CGGCATCTCCCCATTCCAC 60.527 63.158 0.00 0.00 0.00 4.02
846 2352 1.925888 GGCATCTCCCCATTCCACT 59.074 57.895 0.00 0.00 0.00 4.00
847 2353 1.140312 GGCATCTCCCCATTCCACTA 58.860 55.000 0.00 0.00 0.00 2.74
848 2354 1.202818 GGCATCTCCCCATTCCACTAC 60.203 57.143 0.00 0.00 0.00 2.73
849 2355 1.490490 GCATCTCCCCATTCCACTACA 59.510 52.381 0.00 0.00 0.00 2.74
850 2356 2.107204 GCATCTCCCCATTCCACTACAT 59.893 50.000 0.00 0.00 0.00 2.29
851 2357 3.435601 GCATCTCCCCATTCCACTACATT 60.436 47.826 0.00 0.00 0.00 2.71
852 2358 4.392940 CATCTCCCCATTCCACTACATTC 58.607 47.826 0.00 0.00 0.00 2.67
853 2359 2.777692 TCTCCCCATTCCACTACATTCC 59.222 50.000 0.00 0.00 0.00 3.01
854 2360 1.850345 TCCCCATTCCACTACATTCCC 59.150 52.381 0.00 0.00 0.00 3.97
855 2361 1.476833 CCCCATTCCACTACATTCCCG 60.477 57.143 0.00 0.00 0.00 5.14
856 2362 1.488812 CCCATTCCACTACATTCCCGA 59.511 52.381 0.00 0.00 0.00 5.14
857 2363 2.485479 CCCATTCCACTACATTCCCGAG 60.485 54.545 0.00 0.00 0.00 4.63
858 2364 2.213499 CATTCCACTACATTCCCGAGC 58.787 52.381 0.00 0.00 0.00 5.03
859 2365 0.539986 TTCCACTACATTCCCGAGCC 59.460 55.000 0.00 0.00 0.00 4.70
860 2366 0.616395 TCCACTACATTCCCGAGCCA 60.616 55.000 0.00 0.00 0.00 4.75
861 2367 0.469917 CCACTACATTCCCGAGCCAT 59.530 55.000 0.00 0.00 0.00 4.40
862 2368 1.134098 CCACTACATTCCCGAGCCATT 60.134 52.381 0.00 0.00 0.00 3.16
863 2369 2.643551 CACTACATTCCCGAGCCATTT 58.356 47.619 0.00 0.00 0.00 2.32
864 2370 2.614057 CACTACATTCCCGAGCCATTTC 59.386 50.000 0.00 0.00 0.00 2.17
865 2371 1.867233 CTACATTCCCGAGCCATTTCG 59.133 52.381 0.00 0.00 40.18 3.46
866 2372 1.356624 CATTCCCGAGCCATTTCGC 59.643 57.895 0.00 0.00 39.19 4.70
867 2373 1.097547 CATTCCCGAGCCATTTCGCT 61.098 55.000 0.00 0.00 43.42 4.93
868 2374 0.394352 ATTCCCGAGCCATTTCGCTT 60.394 50.000 0.00 0.00 39.87 4.68
869 2375 0.608035 TTCCCGAGCCATTTCGCTTT 60.608 50.000 0.00 0.00 39.87 3.51
870 2376 0.608035 TCCCGAGCCATTTCGCTTTT 60.608 50.000 0.00 0.00 39.87 2.27
871 2377 0.179163 CCCGAGCCATTTCGCTTTTC 60.179 55.000 0.00 0.00 39.87 2.29
872 2378 0.804989 CCGAGCCATTTCGCTTTTCT 59.195 50.000 0.00 0.00 39.87 2.52
873 2379 1.202076 CCGAGCCATTTCGCTTTTCTC 60.202 52.381 0.00 0.00 39.87 2.87
874 2380 1.464608 CGAGCCATTTCGCTTTTCTCA 59.535 47.619 0.00 0.00 39.87 3.27
875 2381 2.095768 CGAGCCATTTCGCTTTTCTCAA 60.096 45.455 0.00 0.00 39.87 3.02
876 2382 3.609175 CGAGCCATTTCGCTTTTCTCAAA 60.609 43.478 0.00 0.00 39.87 2.69
877 2383 4.298332 GAGCCATTTCGCTTTTCTCAAAA 58.702 39.130 0.00 0.00 39.87 2.44
878 2384 4.692228 AGCCATTTCGCTTTTCTCAAAAA 58.308 34.783 0.00 0.00 34.73 1.94
917 2423 0.321298 AGCCATTTCGCCGTGTAACT 60.321 50.000 0.00 0.00 31.75 2.24
918 2424 0.179200 GCCATTTCGCCGTGTAACTG 60.179 55.000 0.00 0.00 31.75 3.16
919 2425 0.179200 CCATTTCGCCGTGTAACTGC 60.179 55.000 0.00 0.00 44.14 4.40
948 2454 4.883354 GGCCGAGGCTGGGATTGG 62.883 72.222 20.75 0.00 41.60 3.16
1061 9964 3.723245 AGGTACGCCTTCCTTCCC 58.277 61.111 0.00 0.00 44.18 3.97
1099 10002 4.253257 CGTACGCCTCCCTCGCTC 62.253 72.222 0.52 0.00 0.00 5.03
1253 10160 1.909141 GAGGTTCGTGTCTCGCTCGA 61.909 60.000 0.00 0.00 40.69 4.04
1254 10161 1.136984 GGTTCGTGTCTCGCTCGAT 59.863 57.895 0.00 0.00 41.75 3.59
1255 10162 0.862283 GGTTCGTGTCTCGCTCGATC 60.862 60.000 0.00 0.00 41.75 3.69
1256 10163 1.060465 TTCGTGTCTCGCTCGATCG 59.940 57.895 9.36 9.36 41.75 3.69
1257 10164 2.898087 TTCGTGTCTCGCTCGATCGC 62.898 60.000 11.09 0.00 41.75 4.58
1258 10165 2.652496 GTGTCTCGCTCGATCGCC 60.652 66.667 11.09 2.72 0.00 5.54
1259 10166 3.889044 TGTCTCGCTCGATCGCCC 61.889 66.667 11.09 2.32 0.00 6.13
1260 10167 3.587933 GTCTCGCTCGATCGCCCT 61.588 66.667 11.09 0.00 0.00 5.19
1267 10174 2.010582 GCTCGATCGCCCTCTCTTGT 62.011 60.000 11.09 0.00 0.00 3.16
1295 10204 1.154188 GAGATATCGCCGTCCTCGC 60.154 63.158 0.00 0.00 35.54 5.03
1319 10228 1.648504 GCGCGGTTATGGTAGACTTT 58.351 50.000 8.83 0.00 0.00 2.66
1431 10340 1.825090 TCTTGTTAGGGCACTGCATG 58.175 50.000 0.00 0.06 0.00 4.06
1456 10366 1.212688 CTGGCCAGTGTGGAATGGATA 59.787 52.381 25.53 0.00 40.96 2.59
1535 10445 2.752903 GTGGTTGTGGGTATTGGTGATC 59.247 50.000 0.00 0.00 0.00 2.92
1536 10446 2.647299 TGGTTGTGGGTATTGGTGATCT 59.353 45.455 0.00 0.00 0.00 2.75
1565 10475 2.030363 CGGGCTTTGTGATGCTGTTTTA 60.030 45.455 0.00 0.00 0.00 1.52
1610 10520 6.578919 GCAGTACATAAAAGTCAGTGCTTTTC 59.421 38.462 20.95 11.50 44.58 2.29
1622 10532 2.561419 AGTGCTTTTCGTGCCTACTCTA 59.439 45.455 0.00 0.00 0.00 2.43
1649 10559 8.694581 AGTACTGTAATTATGTACTCCCTCTC 57.305 38.462 19.66 3.03 41.86 3.20
1650 10560 8.504409 AGTACTGTAATTATGTACTCCCTCTCT 58.496 37.037 19.66 5.13 41.86 3.10
1651 10561 9.790344 GTACTGTAATTATGTACTCCCTCTCTA 57.210 37.037 17.28 0.00 35.16 2.43
1653 10563 9.710818 ACTGTAATTATGTACTCCCTCTCTAAA 57.289 33.333 0.00 0.00 0.00 1.85
1655 10565 9.931698 TGTAATTATGTACTCCCTCTCTAAAGA 57.068 33.333 0.00 0.00 0.00 2.52
1723 10633 7.242914 ACGCTTTTATATTTCTTTACGGAGG 57.757 36.000 0.00 0.00 0.00 4.30
1724 10634 6.259387 ACGCTTTTATATTTCTTTACGGAGGG 59.741 38.462 0.00 0.00 0.00 4.30
1725 10635 6.480981 CGCTTTTATATTTCTTTACGGAGGGA 59.519 38.462 0.00 0.00 0.00 4.20
1726 10636 7.307219 CGCTTTTATATTTCTTTACGGAGGGAG 60.307 40.741 0.00 0.00 0.00 4.30
1727 10637 7.498239 GCTTTTATATTTCTTTACGGAGGGAGT 59.502 37.037 0.00 0.00 0.00 3.85
1730 10640 9.425248 TTTATATTTCTTTACGGAGGGAGTAGA 57.575 33.333 0.00 0.00 0.00 2.59
1731 10641 9.597681 TTATATTTCTTTACGGAGGGAGTAGAT 57.402 33.333 0.00 0.00 0.00 1.98
1732 10642 6.809976 ATTTCTTTACGGAGGGAGTAGATT 57.190 37.500 0.00 0.00 0.00 2.40
1733 10643 6.616237 TTTCTTTACGGAGGGAGTAGATTT 57.384 37.500 0.00 0.00 0.00 2.17
1734 10644 5.848833 TCTTTACGGAGGGAGTAGATTTC 57.151 43.478 0.00 0.00 0.00 2.17
1735 10645 5.516984 TCTTTACGGAGGGAGTAGATTTCT 58.483 41.667 0.00 0.00 0.00 2.52
1736 10646 5.956563 TCTTTACGGAGGGAGTAGATTTCTT 59.043 40.000 0.00 0.00 0.00 2.52
1737 10647 5.593679 TTACGGAGGGAGTAGATTTCTTG 57.406 43.478 0.00 0.00 0.00 3.02
1741 10651 3.536570 GAGGGAGTAGATTTCTTGCACC 58.463 50.000 0.00 0.00 0.00 5.01
1744 10654 3.629398 GGGAGTAGATTTCTTGCACCATG 59.371 47.826 0.00 0.00 0.00 3.66
1747 10657 5.294552 GGAGTAGATTTCTTGCACCATGTAC 59.705 44.000 0.00 0.00 0.00 2.90
1756 10668 3.023946 TGCACCATGTACACATTTTGC 57.976 42.857 14.16 14.16 39.89 3.68
1775 10687 2.170397 TGCTGAGGACTTGACTGTTGAA 59.830 45.455 0.00 0.00 0.00 2.69
1945 10867 5.719173 TCATAAATTTGGTACCTTTGCTGC 58.281 37.500 14.36 0.00 0.00 5.25
1962 10884 2.648059 CTGCTCATTGGGAGGTTTAGG 58.352 52.381 0.00 0.00 44.22 2.69
2034 10956 5.961810 TGTTAACTGTACTTTCGTTTACGC 58.038 37.500 7.22 0.00 39.60 4.42
2056 10978 5.465390 CGCCGAACAATGATATTTTCTAGGA 59.535 40.000 0.00 0.00 0.00 2.94
2159 11084 4.753233 TCAGCAGTGAAGATCTTCTAAGC 58.247 43.478 30.45 27.62 40.14 3.09
2408 11336 2.271800 GGAGCATTAACTGGACACGAG 58.728 52.381 0.00 0.00 0.00 4.18
2423 11351 1.734477 CGAGGTTGAGCGACAGGTG 60.734 63.158 0.00 0.00 0.00 4.00
2435 11369 5.148651 AGCGACAGGTGAGTTATAACTTT 57.851 39.130 18.96 0.00 39.88 2.66
2436 11370 6.071784 TGAGCGACAGGTGAGTTATAACTTTA 60.072 38.462 18.96 9.13 39.88 1.85
2437 11371 6.098017 AGCGACAGGTGAGTTATAACTTTAC 58.902 40.000 18.96 18.66 39.88 2.01
2458 11392 4.398319 ACTACTGGTTCCAGTTTTCATGG 58.602 43.478 26.22 7.97 43.89 3.66
2460 11394 3.222603 ACTGGTTCCAGTTTTCATGGAC 58.777 45.455 17.56 0.00 46.46 4.02
2528 11463 2.332654 CGTTAGGGTGGCTTGGTGC 61.333 63.158 0.00 0.00 41.94 5.01
2529 11464 1.074951 GTTAGGGTGGCTTGGTGCT 59.925 57.895 0.00 0.00 42.39 4.40
2547 11482 1.989165 GCTGATCGAGTGGAATATCGC 59.011 52.381 0.00 0.00 38.79 4.58
2600 11538 3.258372 AGTTGAACCGATCAGCTTCTGTA 59.742 43.478 0.00 0.00 46.20 2.74
2630 11568 8.812513 TTAATCAACAATCAAGATCATGAGGT 57.187 30.769 6.79 4.73 31.76 3.85
2652 11590 5.163237 GGTTACCCCTGATTCTTAGCATGTA 60.163 44.000 0.00 0.00 0.00 2.29
2653 11591 4.423625 ACCCCTGATTCTTAGCATGTAC 57.576 45.455 0.00 0.00 0.00 2.90
2654 11592 4.040755 ACCCCTGATTCTTAGCATGTACT 58.959 43.478 0.00 0.00 0.00 2.73
2657 11595 5.070446 CCCCTGATTCTTAGCATGTACTGTA 59.930 44.000 0.00 0.00 0.00 2.74
2658 11596 6.219473 CCCTGATTCTTAGCATGTACTGTAG 58.781 44.000 0.00 0.00 0.00 2.74
2659 11597 6.183360 CCCTGATTCTTAGCATGTACTGTAGT 60.183 42.308 0.00 0.00 0.00 2.73
2704 11642 6.822667 ATGTGTATGATTGTTTTCTCTGCA 57.177 33.333 0.00 0.00 0.00 4.41
2705 11643 6.822667 TGTGTATGATTGTTTTCTCTGCAT 57.177 33.333 0.00 0.00 0.00 3.96
2772 11799 8.414778 ACTAGTGGACAACTAATTATGACTAGC 58.585 37.037 0.00 0.00 40.92 3.42
2773 11800 6.583562 AGTGGACAACTAATTATGACTAGCC 58.416 40.000 0.00 0.00 37.36 3.93
2774 11801 5.462398 GTGGACAACTAATTATGACTAGCCG 59.538 44.000 0.00 0.00 0.00 5.52
2775 11802 5.128171 TGGACAACTAATTATGACTAGCCGT 59.872 40.000 0.00 0.00 0.00 5.68
2776 11803 5.462398 GGACAACTAATTATGACTAGCCGTG 59.538 44.000 0.00 0.00 0.00 4.94
2777 11804 4.809426 ACAACTAATTATGACTAGCCGTGC 59.191 41.667 0.00 0.00 0.00 5.34
2778 11805 3.991367 ACTAATTATGACTAGCCGTGCC 58.009 45.455 0.00 0.00 0.00 5.01
2807 11837 7.081526 ACTGATCTGCAAGTCACAAATATTC 57.918 36.000 0.00 0.00 33.76 1.75
2822 11852 9.114952 TCACAAATATTCAGTTGAGTGTACAAA 57.885 29.630 0.00 0.00 33.95 2.83
2844 11874 9.308318 ACAAATTAAATAATATTGGTTCGTGGC 57.692 29.630 0.00 0.00 0.00 5.01
2845 11875 9.528018 CAAATTAAATAATATTGGTTCGTGGCT 57.472 29.630 0.00 0.00 0.00 4.75
2848 11878 5.418310 AATAATATTGGTTCGTGGCTTCG 57.582 39.130 0.00 0.00 0.00 3.79
2849 11879 2.396590 ATATTGGTTCGTGGCTTCGT 57.603 45.000 3.16 0.00 0.00 3.85
2850 11880 1.434555 TATTGGTTCGTGGCTTCGTG 58.565 50.000 3.16 0.00 0.00 4.35
2851 11881 1.852067 ATTGGTTCGTGGCTTCGTGC 61.852 55.000 3.16 0.00 41.94 5.34
2852 11882 2.665185 GGTTCGTGGCTTCGTGCT 60.665 61.111 3.58 0.00 42.39 4.40
2853 11883 1.373748 GGTTCGTGGCTTCGTGCTA 60.374 57.895 3.58 0.00 42.39 3.49
2854 11884 1.352156 GGTTCGTGGCTTCGTGCTAG 61.352 60.000 3.58 0.00 42.39 3.42
2855 11885 1.736645 TTCGTGGCTTCGTGCTAGC 60.737 57.895 8.10 8.10 42.39 3.42
2856 11886 2.125912 CGTGGCTTCGTGCTAGCT 60.126 61.111 17.23 0.00 42.39 3.32
2857 11887 1.138883 CGTGGCTTCGTGCTAGCTA 59.861 57.895 17.23 0.00 42.39 3.32
2858 11888 0.249073 CGTGGCTTCGTGCTAGCTAT 60.249 55.000 17.23 0.00 42.39 2.97
2859 11889 1.492720 GTGGCTTCGTGCTAGCTATC 58.507 55.000 17.23 5.73 42.39 2.08
2860 11890 1.067821 GTGGCTTCGTGCTAGCTATCT 59.932 52.381 17.23 0.00 42.39 1.98
2911 11941 3.094572 CACTCCAAGATGCCCTGAAAAT 58.905 45.455 0.00 0.00 0.00 1.82
2926 11956 4.949856 CCTGAAAATAACCCTATGCACAGT 59.050 41.667 0.00 0.00 0.00 3.55
2931 11961 7.613801 TGAAAATAACCCTATGCACAGTACAAT 59.386 33.333 0.00 0.00 0.00 2.71
2949 11979 6.942576 AGTACAATTAGCATCCTGAGTTGTTT 59.057 34.615 0.00 0.00 31.57 2.83
2956 11986 4.646492 AGCATCCTGAGTTGTTTCAGTTTT 59.354 37.500 2.73 0.00 42.41 2.43
2957 11987 4.741676 GCATCCTGAGTTGTTTCAGTTTTG 59.258 41.667 2.73 0.00 42.41 2.44
2958 11988 4.370364 TCCTGAGTTGTTTCAGTTTTGC 57.630 40.909 2.73 0.00 42.41 3.68
2961 11991 4.327087 CCTGAGTTGTTTCAGTTTTGCAAC 59.673 41.667 0.00 0.00 42.41 4.17
3125 12324 7.390440 CCCTGAGTTTGTTGATGTTATACTGAA 59.610 37.037 0.00 0.00 0.00 3.02
3134 12333 8.845227 TGTTGATGTTATACTGAAAGCTTTGAA 58.155 29.630 18.30 3.59 37.60 2.69
3202 12401 2.063266 CACTTGCACATTCCAACATGC 58.937 47.619 0.00 0.00 38.59 4.06
3679 12878 4.794067 AGGTCCCAGTATTTAACTTCCCAT 59.206 41.667 0.00 0.00 35.76 4.00
3723 12922 5.398012 GGGCTTCCTTTCTGTATATGAAGGT 60.398 44.000 0.00 0.00 32.01 3.50
3815 13014 1.291184 CGCTTGGTGATCAACTCGCA 61.291 55.000 19.77 0.00 36.01 5.10
3841 13040 2.430248 TAGGAGCATCGGTGTCTGTA 57.570 50.000 0.00 0.00 34.37 2.74
4006 13205 0.946221 GGGCTCACTGACAGACAACG 60.946 60.000 10.08 0.00 0.00 4.10
4074 13273 4.834357 TGGCCATTTCATATTCGACATG 57.166 40.909 0.00 0.00 0.00 3.21
4139 13338 1.092348 GGAAATGGTCGCTGGTAACC 58.908 55.000 0.00 0.00 36.03 2.85
4172 13371 5.064558 TGATGCGAGGTGTTAAGGTTTTAA 58.935 37.500 0.00 0.00 0.00 1.52
4287 13486 6.925718 TGTTGAATCTCTTCTTCAGTAGTGTG 59.074 38.462 0.00 0.00 34.33 3.82
4426 13625 3.580022 TCTTTCCAGTCATCTCTGCAGAA 59.420 43.478 18.85 9.34 34.47 3.02
4479 13678 4.454728 ACAGCTCTGATTGAGTCTCTTC 57.545 45.455 3.60 0.00 44.41 2.87
4523 13722 1.375013 GTGTTACACGGGCACGGAT 60.375 57.895 15.46 1.64 46.48 4.18
4524 13723 0.952010 GTGTTACACGGGCACGGATT 60.952 55.000 15.46 0.00 46.48 3.01
4555 13754 6.751514 TGACTTTGCTAAGTTCTTTGTTCA 57.248 33.333 14.73 3.24 44.51 3.18
4652 13852 4.003648 ACAAGTGCCTACAGTTTGATAGC 58.996 43.478 0.00 0.00 37.34 2.97
5047 14249 2.128771 AGTTGGCAATCCGCAACTAT 57.871 45.000 1.92 0.00 45.17 2.12
5220 14422 2.723124 AATAAAGCAGCAAACCACCG 57.277 45.000 0.00 0.00 0.00 4.94
5222 14424 0.665835 TAAAGCAGCAAACCACCGTG 59.334 50.000 0.00 0.00 0.00 4.94
5233 14435 2.114670 CCACCGTGCATGGCCTTAG 61.115 63.158 25.30 9.59 0.00 2.18
5235 14437 1.091771 CACCGTGCATGGCCTTAGAG 61.092 60.000 25.30 2.67 0.00 2.43
5236 14438 2.182842 CCGTGCATGGCCTTAGAGC 61.183 63.158 13.11 1.07 0.00 4.09
5238 14440 0.816825 CGTGCATGGCCTTAGAGCAT 60.817 55.000 3.32 0.00 37.56 3.79
5239 14441 0.950116 GTGCATGGCCTTAGAGCATC 59.050 55.000 3.32 0.00 37.56 3.91
5252 14454 0.723981 GAGCATCTTCAACAGACGCC 59.276 55.000 0.00 0.00 42.02 5.68
5253 14455 0.674895 AGCATCTTCAACAGACGCCC 60.675 55.000 0.00 0.00 42.02 6.13
5254 14456 0.955428 GCATCTTCAACAGACGCCCA 60.955 55.000 0.00 0.00 34.42 5.36
5255 14457 1.522668 CATCTTCAACAGACGCCCAA 58.477 50.000 0.00 0.00 32.83 4.12
5256 14458 1.879380 CATCTTCAACAGACGCCCAAA 59.121 47.619 0.00 0.00 32.83 3.28
5257 14459 2.045561 TCTTCAACAGACGCCCAAAA 57.954 45.000 0.00 0.00 0.00 2.44
5258 14460 2.370349 TCTTCAACAGACGCCCAAAAA 58.630 42.857 0.00 0.00 0.00 1.94
5259 14461 2.098443 TCTTCAACAGACGCCCAAAAAC 59.902 45.455 0.00 0.00 0.00 2.43
5260 14462 1.757682 TCAACAGACGCCCAAAAACT 58.242 45.000 0.00 0.00 0.00 2.66
5261 14463 1.403679 TCAACAGACGCCCAAAAACTG 59.596 47.619 0.00 0.00 35.14 3.16
5262 14464 0.744281 AACAGACGCCCAAAAACTGG 59.256 50.000 0.00 0.00 45.97 4.00
5269 14471 2.028925 CCAAAAACTGGGCCGTGC 59.971 61.111 0.00 0.00 42.17 5.34
5270 14472 2.354539 CAAAAACTGGGCCGTGCG 60.355 61.111 0.00 0.00 0.00 5.34
5271 14473 4.279043 AAAAACTGGGCCGTGCGC 62.279 61.111 0.00 0.00 41.94 6.09
5273 14475 3.835790 AAAACTGGGCCGTGCGCTA 62.836 57.895 9.73 0.00 42.10 4.26
5274 14476 3.835790 AAACTGGGCCGTGCGCTAA 62.836 57.895 9.73 0.00 42.10 3.09
5275 14477 3.835790 AACTGGGCCGTGCGCTAAA 62.836 57.895 9.73 0.00 42.10 1.85
5276 14478 3.053291 CTGGGCCGTGCGCTAAAA 61.053 61.111 9.73 0.00 42.10 1.52
5277 14479 2.360600 TGGGCCGTGCGCTAAAAT 60.361 55.556 9.73 0.00 42.10 1.82
5278 14480 2.322999 CTGGGCCGTGCGCTAAAATC 62.323 60.000 9.73 0.00 42.10 2.17
5279 14481 2.407616 GGCCGTGCGCTAAAATCC 59.592 61.111 9.73 0.00 37.74 3.01
5280 14482 2.022762 GCCGTGCGCTAAAATCCG 59.977 61.111 9.73 0.00 0.00 4.18
5281 14483 2.457778 GCCGTGCGCTAAAATCCGA 61.458 57.895 9.73 0.00 0.00 4.55
5282 14484 1.636340 CCGTGCGCTAAAATCCGAG 59.364 57.895 9.73 0.00 0.00 4.63
5283 14485 1.082117 CCGTGCGCTAAAATCCGAGT 61.082 55.000 9.73 0.00 0.00 4.18
5284 14486 0.719465 CGTGCGCTAAAATCCGAGTT 59.281 50.000 9.73 0.00 0.00 3.01
5285 14487 1.127951 CGTGCGCTAAAATCCGAGTTT 59.872 47.619 9.73 0.00 0.00 2.66
5286 14488 2.412325 CGTGCGCTAAAATCCGAGTTTT 60.412 45.455 9.73 3.78 35.60 2.43
5287 14489 3.561503 GTGCGCTAAAATCCGAGTTTTT 58.438 40.909 9.73 0.00 33.62 1.94
5301 14503 3.739167 TTTTTGGACGCCGGACAG 58.261 55.556 5.05 0.00 0.00 3.51
5302 14504 2.548295 TTTTTGGACGCCGGACAGC 61.548 57.895 5.05 0.00 0.00 4.40
5303 14505 2.951475 TTTTTGGACGCCGGACAGCT 62.951 55.000 5.05 0.00 0.00 4.24
5304 14506 3.876589 TTTGGACGCCGGACAGCTC 62.877 63.158 5.05 0.00 0.00 4.09
5307 14509 4.803426 GACGCCGGACAGCTCCAG 62.803 72.222 5.05 0.00 36.12 3.86
5311 14513 3.385384 CCGGACAGCTCCAGCAGA 61.385 66.667 0.00 0.00 45.16 4.26
5312 14514 2.659016 CGGACAGCTCCAGCAGAA 59.341 61.111 0.48 0.00 45.16 3.02
5313 14515 1.447489 CGGACAGCTCCAGCAGAAG 60.447 63.158 0.48 0.00 45.16 2.85
5314 14516 1.744741 GGACAGCTCCAGCAGAAGC 60.745 63.158 0.48 0.00 45.16 3.86
5331 14533 2.865151 CTGTAAAACAGCGCGCGC 60.865 61.111 45.10 45.10 39.62 6.86
5344 14546 4.639171 CGCGCGCAAAAAGGGGTT 62.639 61.111 32.61 0.00 0.00 4.11
5345 14547 3.035503 GCGCGCAAAAAGGGGTTG 61.036 61.111 29.10 0.00 0.00 3.77
5346 14548 2.415426 CGCGCAAAAAGGGGTTGT 59.585 55.556 8.75 0.00 0.00 3.32
5347 14549 1.948635 CGCGCAAAAAGGGGTTGTG 60.949 57.895 8.75 0.00 39.07 3.33
5348 14550 4.026226 CGCAAAAAGGGGTTGTGC 57.974 55.556 0.00 0.00 30.44 4.57
5349 14551 4.026226 GCAAAAAGGGGTTGTGCG 57.974 55.556 0.00 0.00 0.00 5.34
5350 14552 2.243957 GCAAAAAGGGGTTGTGCGC 61.244 57.895 0.00 0.00 0.00 6.09
5351 14553 1.948635 CAAAAAGGGGTTGTGCGCG 60.949 57.895 0.00 0.00 0.00 6.86
5352 14554 3.145422 AAAAAGGGGTTGTGCGCGG 62.145 57.895 8.83 0.00 0.00 6.46
5358 14560 3.587933 GGTTGTGCGCGGGTTGAA 61.588 61.111 8.83 0.00 0.00 2.69
5359 14561 2.409651 GTTGTGCGCGGGTTGAAA 59.590 55.556 8.83 0.00 0.00 2.69
5360 14562 1.226717 GTTGTGCGCGGGTTGAAAA 60.227 52.632 8.83 0.00 0.00 2.29
5361 14563 0.802607 GTTGTGCGCGGGTTGAAAAA 60.803 50.000 8.83 0.00 0.00 1.94
5362 14564 0.103208 TTGTGCGCGGGTTGAAAAAT 59.897 45.000 8.83 0.00 0.00 1.82
5363 14565 0.596083 TGTGCGCGGGTTGAAAAATG 60.596 50.000 8.83 0.00 0.00 2.32
5364 14566 1.663074 TGCGCGGGTTGAAAAATGC 60.663 52.632 8.83 0.00 0.00 3.56
5365 14567 1.372872 GCGCGGGTTGAAAAATGCT 60.373 52.632 8.83 0.00 0.00 3.79
5366 14568 0.109504 GCGCGGGTTGAAAAATGCTA 60.110 50.000 8.83 0.00 0.00 3.49
5367 14569 1.469079 GCGCGGGTTGAAAAATGCTAT 60.469 47.619 8.83 0.00 0.00 2.97
5368 14570 2.450160 CGCGGGTTGAAAAATGCTATC 58.550 47.619 0.00 0.00 0.00 2.08
5369 14571 2.159448 CGCGGGTTGAAAAATGCTATCA 60.159 45.455 0.00 0.00 0.00 2.15
5370 14572 3.671971 CGCGGGTTGAAAAATGCTATCAA 60.672 43.478 0.00 0.00 0.00 2.57
5371 14573 4.241681 GCGGGTTGAAAAATGCTATCAAA 58.758 39.130 0.00 0.00 35.07 2.69
5372 14574 4.688413 GCGGGTTGAAAAATGCTATCAAAA 59.312 37.500 0.00 0.00 35.07 2.44
5373 14575 5.163963 GCGGGTTGAAAAATGCTATCAAAAG 60.164 40.000 0.00 0.00 35.07 2.27
5374 14576 5.163963 CGGGTTGAAAAATGCTATCAAAAGC 60.164 40.000 0.00 0.00 43.08 3.51
5375 14577 5.934043 GGGTTGAAAAATGCTATCAAAAGCT 59.066 36.000 0.00 0.00 43.19 3.74
5376 14578 6.128472 GGGTTGAAAAATGCTATCAAAAGCTG 60.128 38.462 0.00 0.00 43.19 4.24
5377 14579 6.301861 GTTGAAAAATGCTATCAAAAGCTGC 58.698 36.000 0.00 0.00 43.19 5.25
5378 14580 5.539979 TGAAAAATGCTATCAAAAGCTGCA 58.460 33.333 1.02 0.00 43.19 4.41
5379 14581 5.990386 TGAAAAATGCTATCAAAAGCTGCAA 59.010 32.000 1.02 0.00 43.19 4.08
5380 14582 6.482641 TGAAAAATGCTATCAAAAGCTGCAAA 59.517 30.769 1.02 0.00 43.19 3.68
5381 14583 7.173562 TGAAAAATGCTATCAAAAGCTGCAAAT 59.826 29.630 1.02 0.00 43.19 2.32
5382 14584 7.443259 AAAATGCTATCAAAAGCTGCAAATT 57.557 28.000 1.02 0.00 43.19 1.82
5383 14585 7.443259 AAATGCTATCAAAAGCTGCAAATTT 57.557 28.000 1.02 0.00 43.19 1.82
5384 14586 5.849357 TGCTATCAAAAGCTGCAAATTTG 57.151 34.783 14.03 14.03 43.19 2.32
5385 14587 5.539979 TGCTATCAAAAGCTGCAAATTTGA 58.460 33.333 22.31 21.80 44.44 2.69
5386 14588 5.990386 TGCTATCAAAAGCTGCAAATTTGAA 59.010 32.000 22.31 10.82 43.79 2.69
5387 14589 6.146510 TGCTATCAAAAGCTGCAAATTTGAAG 59.853 34.615 22.31 21.28 43.79 3.02
5392 14594 2.064387 CTGCAAATTTGAAGCGCCG 58.936 52.632 22.31 0.00 0.00 6.46
5393 14595 1.346378 CTGCAAATTTGAAGCGCCGG 61.346 55.000 22.31 0.00 0.00 6.13
5394 14596 1.080839 GCAAATTTGAAGCGCCGGA 60.081 52.632 22.31 0.00 0.00 5.14
5395 14597 0.458370 GCAAATTTGAAGCGCCGGAT 60.458 50.000 22.31 0.00 0.00 4.18
5396 14598 1.994916 CAAATTTGAAGCGCCGGATT 58.005 45.000 13.08 0.00 0.00 3.01
5397 14599 1.655099 CAAATTTGAAGCGCCGGATTG 59.345 47.619 13.08 0.00 0.00 2.67
5398 14600 0.458370 AATTTGAAGCGCCGGATTGC 60.458 50.000 5.05 5.46 0.00 3.56
5408 14610 4.520846 CGGATTGCGCGCCTTCAC 62.521 66.667 30.77 16.49 0.00 3.18
5409 14611 3.430862 GGATTGCGCGCCTTCACA 61.431 61.111 30.77 5.30 0.00 3.58
5410 14612 2.560861 GATTGCGCGCCTTCACAA 59.439 55.556 30.77 15.71 0.00 3.33
5411 14613 1.137404 GATTGCGCGCCTTCACAAT 59.863 52.632 30.77 20.12 35.52 2.71
5412 14614 0.456653 GATTGCGCGCCTTCACAATT 60.457 50.000 30.77 3.80 33.07 2.32
5413 14615 0.038343 ATTGCGCGCCTTCACAATTT 60.038 45.000 30.77 0.00 28.54 1.82
5414 14616 0.593618 TTGCGCGCCTTCACAATTTA 59.406 45.000 30.77 0.96 0.00 1.40
5415 14617 0.109964 TGCGCGCCTTCACAATTTAC 60.110 50.000 30.77 0.00 0.00 2.01
5416 14618 0.109964 GCGCGCCTTCACAATTTACA 60.110 50.000 23.24 0.00 0.00 2.41
5417 14619 1.602191 CGCGCCTTCACAATTTACAC 58.398 50.000 0.00 0.00 0.00 2.90
5418 14620 1.196808 CGCGCCTTCACAATTTACACT 59.803 47.619 0.00 0.00 0.00 3.55
5419 14621 2.584791 GCGCCTTCACAATTTACACTG 58.415 47.619 0.00 0.00 0.00 3.66
5420 14622 2.584791 CGCCTTCACAATTTACACTGC 58.415 47.619 0.00 0.00 0.00 4.40
5421 14623 2.584791 GCCTTCACAATTTACACTGCG 58.415 47.619 0.00 0.00 0.00 5.18
5422 14624 2.031157 GCCTTCACAATTTACACTGCGT 60.031 45.455 0.00 0.00 0.00 5.24
5423 14625 3.554524 CCTTCACAATTTACACTGCGTG 58.445 45.455 7.07 7.07 39.75 5.34
5425 14627 4.497340 CCTTCACAATTTACACTGCGTGTT 60.497 41.667 17.12 0.33 45.08 3.32
5426 14628 4.203950 TCACAATTTACACTGCGTGTTC 57.796 40.909 17.12 0.00 45.08 3.18
5427 14629 3.874543 TCACAATTTACACTGCGTGTTCT 59.125 39.130 17.12 3.25 45.08 3.01
5428 14630 4.334203 TCACAATTTACACTGCGTGTTCTT 59.666 37.500 17.12 7.95 45.08 2.52
5429 14631 5.034152 CACAATTTACACTGCGTGTTCTTT 58.966 37.500 17.12 7.81 45.08 2.52
5430 14632 5.514914 CACAATTTACACTGCGTGTTCTTTT 59.485 36.000 17.12 6.47 45.08 2.27
5431 14633 5.514914 ACAATTTACACTGCGTGTTCTTTTG 59.485 36.000 17.12 16.21 45.08 2.44
5432 14634 3.684103 TTACACTGCGTGTTCTTTTGG 57.316 42.857 17.12 0.00 45.08 3.28
5433 14635 0.738389 ACACTGCGTGTTCTTTTGGG 59.262 50.000 8.25 0.00 45.08 4.12
5434 14636 0.594796 CACTGCGTGTTCTTTTGGGC 60.595 55.000 1.24 0.00 0.00 5.36
5435 14637 1.370414 CTGCGTGTTCTTTTGGGCG 60.370 57.895 0.00 0.00 0.00 6.13
5436 14638 2.729491 GCGTGTTCTTTTGGGCGC 60.729 61.111 0.00 0.00 38.15 6.53
5437 14639 2.426752 CGTGTTCTTTTGGGCGCG 60.427 61.111 0.00 0.00 0.00 6.86
5438 14640 2.729491 GTGTTCTTTTGGGCGCGC 60.729 61.111 25.94 25.94 0.00 6.86
5439 14641 4.320928 TGTTCTTTTGGGCGCGCG 62.321 61.111 28.44 28.44 0.00 6.86
5440 14642 4.322385 GTTCTTTTGGGCGCGCGT 62.322 61.111 32.35 0.00 0.00 6.01
5441 14643 3.587933 TTCTTTTGGGCGCGCGTT 61.588 55.556 32.35 0.00 0.00 4.84
5442 14644 3.127352 TTCTTTTGGGCGCGCGTTT 62.127 52.632 32.35 0.00 0.00 3.60
5443 14645 2.615262 TTCTTTTGGGCGCGCGTTTT 62.615 50.000 32.35 0.00 0.00 2.43
5444 14646 2.202756 TTTTGGGCGCGCGTTTTT 60.203 50.000 32.35 0.00 0.00 1.94
5445 14647 2.409580 CTTTTGGGCGCGCGTTTTTG 62.410 55.000 32.35 10.14 0.00 2.44
5446 14648 4.933064 TTGGGCGCGCGTTTTTGG 62.933 61.111 32.35 0.92 0.00 3.28
5452 14654 2.258286 GCGCGTTTTTGGGCATCT 59.742 55.556 8.43 0.00 46.11 2.90
5453 14655 2.088178 GCGCGTTTTTGGGCATCTG 61.088 57.895 8.43 0.00 46.11 2.90
5454 14656 2.088178 CGCGTTTTTGGGCATCTGC 61.088 57.895 0.00 0.00 41.14 4.26
5455 14657 2.088178 GCGTTTTTGGGCATCTGCG 61.088 57.895 0.00 0.00 43.26 5.18
5456 14658 1.578926 CGTTTTTGGGCATCTGCGA 59.421 52.632 0.00 0.00 43.26 5.10
5457 14659 0.039617 CGTTTTTGGGCATCTGCGAA 60.040 50.000 0.00 0.00 43.26 4.70
5458 14660 1.601663 CGTTTTTGGGCATCTGCGAAA 60.602 47.619 0.00 0.00 43.26 3.46
5459 14661 2.061028 GTTTTTGGGCATCTGCGAAAG 58.939 47.619 0.00 0.00 43.26 2.62
5460 14662 1.327303 TTTTGGGCATCTGCGAAAGT 58.673 45.000 0.00 0.00 43.26 2.66
5461 14663 2.192664 TTTGGGCATCTGCGAAAGTA 57.807 45.000 0.00 0.00 43.26 2.24
5462 14664 2.192664 TTGGGCATCTGCGAAAGTAA 57.807 45.000 0.00 0.00 43.26 2.24
5463 14665 1.448985 TGGGCATCTGCGAAAGTAAC 58.551 50.000 0.00 0.00 43.26 2.50
5464 14666 0.373716 GGGCATCTGCGAAAGTAACG 59.626 55.000 0.00 0.00 43.26 3.18
5465 14667 1.076332 GGCATCTGCGAAAGTAACGT 58.924 50.000 0.00 0.00 43.26 3.99
5466 14668 1.463444 GGCATCTGCGAAAGTAACGTT 59.537 47.619 5.88 5.88 43.26 3.99
5467 14669 2.495939 GCATCTGCGAAAGTAACGTTG 58.504 47.619 11.99 0.00 0.00 4.10
5468 14670 2.724839 GCATCTGCGAAAGTAACGTTGG 60.725 50.000 11.99 0.00 0.00 3.77
5469 14671 1.504359 TCTGCGAAAGTAACGTTGGG 58.496 50.000 11.99 0.00 0.00 4.12
5470 14672 1.202557 TCTGCGAAAGTAACGTTGGGT 60.203 47.619 11.99 0.00 0.00 4.51
5471 14673 1.193874 CTGCGAAAGTAACGTTGGGTC 59.806 52.381 11.99 2.20 0.00 4.46
5472 14674 1.202557 TGCGAAAGTAACGTTGGGTCT 60.203 47.619 11.99 1.30 0.00 3.85
5473 14675 1.193874 GCGAAAGTAACGTTGGGTCTG 59.806 52.381 11.99 0.00 0.00 3.51
5474 14676 2.746269 CGAAAGTAACGTTGGGTCTGA 58.254 47.619 11.99 0.00 0.00 3.27
5475 14677 2.473984 CGAAAGTAACGTTGGGTCTGAC 59.526 50.000 11.99 0.00 0.00 3.51
5476 14678 2.538512 AAGTAACGTTGGGTCTGACC 57.461 50.000 18.65 18.65 37.60 4.02
5488 14690 2.152016 GGTCTGACCCACTAAAAGTGC 58.848 52.381 16.14 0.00 44.63 4.40
5489 14691 2.224548 GGTCTGACCCACTAAAAGTGCT 60.225 50.000 16.14 0.00 44.63 4.40
5490 14692 3.007614 GGTCTGACCCACTAAAAGTGCTA 59.992 47.826 16.14 0.00 44.63 3.49
5491 14693 4.246458 GTCTGACCCACTAAAAGTGCTAG 58.754 47.826 1.43 0.00 44.63 3.42
5492 14694 4.021368 GTCTGACCCACTAAAAGTGCTAGA 60.021 45.833 0.00 0.59 44.63 2.43
5493 14695 4.220821 TCTGACCCACTAAAAGTGCTAGAG 59.779 45.833 0.00 0.00 44.63 2.43
5494 14696 3.901844 TGACCCACTAAAAGTGCTAGAGT 59.098 43.478 0.00 0.00 44.63 3.24
5495 14697 4.246458 GACCCACTAAAAGTGCTAGAGTG 58.754 47.826 0.00 0.00 44.63 3.51
5496 14698 3.901844 ACCCACTAAAAGTGCTAGAGTGA 59.098 43.478 6.98 0.00 44.63 3.41
5497 14699 4.246458 CCCACTAAAAGTGCTAGAGTGAC 58.754 47.826 6.98 0.00 44.63 3.67
5498 14700 3.921021 CCACTAAAAGTGCTAGAGTGACG 59.079 47.826 6.98 0.00 44.63 4.35
5499 14701 3.365220 CACTAAAAGTGCTAGAGTGACGC 59.635 47.826 0.00 0.00 39.62 5.19
5500 14702 1.419374 AAAAGTGCTAGAGTGACGCG 58.581 50.000 3.53 3.53 0.00 6.01
5501 14703 1.009389 AAAGTGCTAGAGTGACGCGC 61.009 55.000 5.73 0.00 34.58 6.86
5502 14704 1.867919 AAGTGCTAGAGTGACGCGCT 61.868 55.000 5.73 0.00 45.44 5.92
5503 14705 1.025113 AGTGCTAGAGTGACGCGCTA 61.025 55.000 5.73 0.00 42.13 4.26
5504 14706 0.179171 GTGCTAGAGTGACGCGCTAA 60.179 55.000 5.73 0.00 0.00 3.09
5505 14707 0.524414 TGCTAGAGTGACGCGCTAAA 59.476 50.000 5.73 0.00 0.00 1.85
5506 14708 1.068125 TGCTAGAGTGACGCGCTAAAA 60.068 47.619 5.73 0.00 0.00 1.52
5507 14709 1.320852 GCTAGAGTGACGCGCTAAAAC 59.679 52.381 5.73 0.00 0.00 2.43
5508 14710 2.864968 CTAGAGTGACGCGCTAAAACT 58.135 47.619 5.73 2.27 0.00 2.66
5509 14711 3.730061 GCTAGAGTGACGCGCTAAAACTA 60.730 47.826 5.73 2.70 0.00 2.24
5510 14712 3.505464 AGAGTGACGCGCTAAAACTAT 57.495 42.857 5.73 0.00 0.00 2.12
5511 14713 3.846360 AGAGTGACGCGCTAAAACTATT 58.154 40.909 5.73 0.00 0.00 1.73
5512 14714 4.243270 AGAGTGACGCGCTAAAACTATTT 58.757 39.130 5.73 0.00 0.00 1.40
5513 14715 4.689345 AGAGTGACGCGCTAAAACTATTTT 59.311 37.500 5.73 0.00 36.67 1.82
5514 14716 5.865552 AGAGTGACGCGCTAAAACTATTTTA 59.134 36.000 5.73 0.00 34.19 1.52
5533 14735 9.900264 CTATTTTAGGACGCAAAATTTTTATGC 57.100 29.630 0.00 1.83 36.99 3.14
5534 14736 7.715265 TTTTAGGACGCAAAATTTTTATGCA 57.285 28.000 12.50 0.00 40.04 3.96
5535 14737 6.698359 TTAGGACGCAAAATTTTTATGCAC 57.302 33.333 12.50 6.57 40.04 4.57
5536 14738 3.993736 AGGACGCAAAATTTTTATGCACC 59.006 39.130 12.50 13.25 40.04 5.01
5537 14739 3.993736 GGACGCAAAATTTTTATGCACCT 59.006 39.130 12.50 0.00 40.04 4.00
5538 14740 4.143137 GGACGCAAAATTTTTATGCACCTG 60.143 41.667 12.50 0.87 40.04 4.00
5539 14741 4.376146 ACGCAAAATTTTTATGCACCTGT 58.624 34.783 12.50 1.39 40.04 4.00
5540 14742 4.813697 ACGCAAAATTTTTATGCACCTGTT 59.186 33.333 12.50 0.00 40.04 3.16
5541 14743 5.138788 CGCAAAATTTTTATGCACCTGTTG 58.861 37.500 12.50 0.00 40.04 3.33
5542 14744 5.451039 GCAAAATTTTTATGCACCTGTTGG 58.549 37.500 0.00 0.00 39.81 3.77
5543 14745 5.238214 GCAAAATTTTTATGCACCTGTTGGA 59.762 36.000 0.00 0.00 39.81 3.53
5544 14746 6.566376 GCAAAATTTTTATGCACCTGTTGGAG 60.566 38.462 0.00 0.00 39.81 3.86
5545 14747 6.418057 AAATTTTTATGCACCTGTTGGAGA 57.582 33.333 0.00 0.00 37.04 3.71
5546 14748 6.610075 AATTTTTATGCACCTGTTGGAGAT 57.390 33.333 0.00 0.00 37.04 2.75
5547 14749 5.389859 TTTTTATGCACCTGTTGGAGATG 57.610 39.130 0.00 0.00 37.04 2.90
5548 14750 2.042686 TATGCACCTGTTGGAGATGC 57.957 50.000 0.00 0.00 34.56 3.91
5549 14751 0.330604 ATGCACCTGTTGGAGATGCT 59.669 50.000 0.00 0.00 34.91 3.79
5550 14752 0.321919 TGCACCTGTTGGAGATGCTC 60.322 55.000 0.00 0.00 34.91 4.26
5551 14753 0.035630 GCACCTGTTGGAGATGCTCT 60.036 55.000 0.00 0.00 37.04 4.09
5552 14754 1.612726 GCACCTGTTGGAGATGCTCTT 60.613 52.381 0.00 0.00 37.04 2.85
5553 14755 2.355108 GCACCTGTTGGAGATGCTCTTA 60.355 50.000 0.00 0.00 37.04 2.10
5554 14756 3.265791 CACCTGTTGGAGATGCTCTTAC 58.734 50.000 0.00 0.00 37.04 2.34
5555 14757 2.906389 ACCTGTTGGAGATGCTCTTACA 59.094 45.455 0.00 0.00 37.04 2.41
5556 14758 3.327757 ACCTGTTGGAGATGCTCTTACAA 59.672 43.478 0.00 0.00 37.04 2.41
5557 14759 4.202461 ACCTGTTGGAGATGCTCTTACAAA 60.202 41.667 0.00 0.00 37.04 2.83
5558 14760 4.761739 CCTGTTGGAGATGCTCTTACAAAA 59.238 41.667 0.00 0.00 34.57 2.44
5559 14761 5.241506 CCTGTTGGAGATGCTCTTACAAAAA 59.758 40.000 0.00 0.00 34.57 1.94
5560 14762 6.071728 CCTGTTGGAGATGCTCTTACAAAAAT 60.072 38.462 0.00 0.00 34.57 1.82
5561 14763 6.680810 TGTTGGAGATGCTCTTACAAAAATG 58.319 36.000 0.00 0.00 29.75 2.32
5593 14795 3.788797 GCATGAGCGGTAAACATAAGTGC 60.789 47.826 0.00 0.00 0.00 4.40
5611 14813 0.381801 GCCATGCAACATAGGTTCCG 59.618 55.000 0.00 0.00 34.21 4.30
5614 14816 2.097466 CCATGCAACATAGGTTCCGAAC 59.903 50.000 2.37 2.37 34.21 3.95
5683 14885 5.757320 CCAAGTACAGAAGATTAGGCATCAG 59.243 44.000 0.00 0.00 33.75 2.90
5702 14904 1.474478 AGCGAGATCACTCAACGATGT 59.526 47.619 0.00 0.00 42.72 3.06
5703 14905 2.094494 AGCGAGATCACTCAACGATGTT 60.094 45.455 0.00 0.00 42.72 2.71
5704 14906 2.668457 GCGAGATCACTCAACGATGTTT 59.332 45.455 0.00 0.00 42.72 2.83
5705 14907 3.482598 GCGAGATCACTCAACGATGTTTG 60.483 47.826 0.00 0.00 42.72 2.93
5706 14908 3.920412 CGAGATCACTCAACGATGTTTGA 59.080 43.478 0.00 0.00 42.72 2.69
5707 14909 4.385748 CGAGATCACTCAACGATGTTTGAA 59.614 41.667 0.00 0.00 42.72 2.69
5708 14910 5.597813 AGATCACTCAACGATGTTTGAAC 57.402 39.130 0.00 0.00 35.07 3.18
5753 14955 4.811969 TTCGCCTTTTCTAGTCATGGTA 57.188 40.909 0.00 0.00 0.00 3.25
5758 14960 4.508124 GCCTTTTCTAGTCATGGTATGTCG 59.492 45.833 0.00 0.00 0.00 4.35
5767 14969 2.006888 CATGGTATGTCGCTTTTCCGT 58.993 47.619 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.525055 GCTCACGCAGTTCAACAAAAA 58.475 42.857 0.00 0.00 41.61 1.94
75 76 4.275689 CACCACATCAGAGTTGCTTAACAA 59.724 41.667 0.00 0.00 35.33 2.83
77 78 4.065088 TCACCACATCAGAGTTGCTTAAC 58.935 43.478 0.00 0.00 0.00 2.01
78 79 4.350368 TCACCACATCAGAGTTGCTTAA 57.650 40.909 0.00 0.00 0.00 1.85
79 80 4.318332 CTTCACCACATCAGAGTTGCTTA 58.682 43.478 0.00 0.00 0.00 3.09
80 81 2.936919 TCACCACATCAGAGTTGCTT 57.063 45.000 0.00 0.00 0.00 3.91
82 83 1.808945 CCTTCACCACATCAGAGTTGC 59.191 52.381 0.00 0.00 0.00 4.17
83 84 1.808945 GCCTTCACCACATCAGAGTTG 59.191 52.381 0.00 0.00 0.00 3.16
84 85 1.421268 TGCCTTCACCACATCAGAGTT 59.579 47.619 0.00 0.00 0.00 3.01
85 86 1.059098 TGCCTTCACCACATCAGAGT 58.941 50.000 0.00 0.00 0.00 3.24
105 117 1.887242 GTGAGCTGAACCACGTGCA 60.887 57.895 10.91 1.67 0.00 4.57
108 120 3.226242 TGGTGAGCTGAACCACGT 58.774 55.556 12.84 0.00 42.82 4.49
227 247 8.761497 GTGCTGCAAAATACTCGATTTATACTA 58.239 33.333 2.77 0.00 36.71 1.82
233 253 4.475944 GTGTGCTGCAAAATACTCGATTT 58.524 39.130 2.77 0.00 39.56 2.17
236 256 1.804151 GGTGTGCTGCAAAATACTCGA 59.196 47.619 2.77 0.00 0.00 4.04
258 278 9.786105 CATACAGACATTGTGTTGCAATAATTA 57.214 29.630 0.59 0.00 45.33 1.40
282 1741 7.278424 GCACACAAATTTCCTTATTGCATACAT 59.722 33.333 0.00 0.00 0.00 2.29
287 1746 5.212532 AGCACACAAATTTCCTTATTGCA 57.787 34.783 0.00 0.00 0.00 4.08
296 1755 2.216263 GTGTCGCAAGCACACAAATTTC 59.784 45.455 16.99 0.00 43.28 2.17
305 1764 2.638719 TGCATGTGTCGCAAGCAC 59.361 55.556 12.00 0.00 45.41 4.40
313 1772 3.244976 GCACAGGTTATTTGCATGTGTC 58.755 45.455 14.04 5.12 46.38 3.67
362 1821 0.662619 CCAACTTTGTTGCTGCGAGA 59.337 50.000 5.04 0.00 0.00 4.04
408 1867 1.106285 GCTTCAATGGGGCTACCTTG 58.894 55.000 0.00 2.89 41.11 3.61
421 1880 1.927174 GCTCGCTCGATTTAGCTTCAA 59.073 47.619 0.00 0.00 40.49 2.69
440 1899 5.062528 AGCTTAGGCAAGAATGAATCTAGC 58.937 41.667 0.00 0.00 41.70 3.42
481 1940 2.132740 GCATTTGGAGCGTGAAACAA 57.867 45.000 0.00 0.00 35.74 2.83
504 1963 0.806884 TTGTTGTGGTCGTGGTCGTC 60.807 55.000 0.00 0.00 38.33 4.20
513 1972 0.467290 TTGCCCCTCTTGTTGTGGTC 60.467 55.000 0.00 0.00 0.00 4.02
516 1975 1.181098 CCCTTGCCCCTCTTGTTGTG 61.181 60.000 0.00 0.00 0.00 3.33
518 1977 1.607467 CCCCTTGCCCCTCTTGTTG 60.607 63.158 0.00 0.00 0.00 3.33
519 1978 2.854076 CCCCTTGCCCCTCTTGTT 59.146 61.111 0.00 0.00 0.00 2.83
520 1979 3.984732 GCCCCTTGCCCCTCTTGT 61.985 66.667 0.00 0.00 0.00 3.16
521 1980 3.983420 TGCCCCTTGCCCCTCTTG 61.983 66.667 0.00 0.00 40.16 3.02
522 1981 3.984732 GTGCCCCTTGCCCCTCTT 61.985 66.667 0.00 0.00 40.16 2.85
524 1983 2.631012 CTATGTGCCCCTTGCCCCTC 62.631 65.000 0.00 0.00 40.16 4.30
525 1984 2.616893 TATGTGCCCCTTGCCCCT 60.617 61.111 0.00 0.00 40.16 4.79
526 1985 2.123726 CTATGTGCCCCTTGCCCC 60.124 66.667 0.00 0.00 40.16 5.80
527 1986 1.754234 CACTATGTGCCCCTTGCCC 60.754 63.158 0.00 0.00 40.16 5.36
528 1987 3.924507 CACTATGTGCCCCTTGCC 58.075 61.111 0.00 0.00 40.16 4.52
580 2044 3.759618 CCCAAGGAATTTTGCTACCGTTA 59.240 43.478 0.00 0.00 0.00 3.18
590 2054 3.840078 CTCATTGACCCCCAAGGAATTTT 59.160 43.478 0.00 0.00 43.84 1.82
596 2060 2.834638 AATCTCATTGACCCCCAAGG 57.165 50.000 0.00 0.00 38.31 3.61
601 2065 1.680338 CCGGAAATCTCATTGACCCC 58.320 55.000 0.00 0.00 0.00 4.95
701 2165 6.957635 GCTATTTTACAGTTTTGTACCGCTAC 59.042 38.462 0.00 0.00 39.44 3.58
741 2206 1.901464 GCCTGCGACCCCTCAAAAA 60.901 57.895 0.00 0.00 0.00 1.94
742 2207 2.282180 GCCTGCGACCCCTCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
743 2208 4.344865 GGCCTGCGACCCCTCAAA 62.345 66.667 0.00 0.00 0.00 2.69
748 2213 4.660938 AAACTGGCCTGCGACCCC 62.661 66.667 9.95 0.00 0.00 4.95
749 2214 2.597510 AAAACTGGCCTGCGACCC 60.598 61.111 9.95 0.00 0.00 4.46
750 2215 2.644992 CAAAACTGGCCTGCGACC 59.355 61.111 9.95 0.00 0.00 4.79
751 2216 2.193536 ACCAAAACTGGCCTGCGAC 61.194 57.895 9.95 0.00 0.00 5.19
752 2217 2.192861 CACCAAAACTGGCCTGCGA 61.193 57.895 9.95 0.00 0.00 5.10
753 2218 2.336088 CACCAAAACTGGCCTGCG 59.664 61.111 9.95 0.00 0.00 5.18
781 2246 0.251916 TCATGGGTTGATCGTGTCCC 59.748 55.000 0.00 7.19 40.26 4.46
784 2249 2.027285 TGACATCATGGGTTGATCGTGT 60.027 45.455 0.00 0.00 43.40 4.49
830 2325 4.392940 GAATGTAGTGGAATGGGGAGATG 58.607 47.826 0.00 0.00 0.00 2.90
844 2350 2.741878 CGAAATGGCTCGGGAATGTAGT 60.742 50.000 0.00 0.00 35.14 2.73
845 2351 1.867233 CGAAATGGCTCGGGAATGTAG 59.133 52.381 0.00 0.00 35.14 2.74
846 2352 1.948104 CGAAATGGCTCGGGAATGTA 58.052 50.000 0.00 0.00 35.14 2.29
847 2353 1.376609 GCGAAATGGCTCGGGAATGT 61.377 55.000 0.00 0.00 39.27 2.71
848 2354 1.097547 AGCGAAATGGCTCGGGAATG 61.098 55.000 0.00 0.00 39.61 2.67
849 2355 0.394352 AAGCGAAATGGCTCGGGAAT 60.394 50.000 0.00 0.00 43.93 3.01
850 2356 0.608035 AAAGCGAAATGGCTCGGGAA 60.608 50.000 0.00 0.00 43.93 3.97
851 2357 0.608035 AAAAGCGAAATGGCTCGGGA 60.608 50.000 0.00 0.00 43.93 5.14
852 2358 0.179163 GAAAAGCGAAATGGCTCGGG 60.179 55.000 0.00 0.00 43.93 5.14
853 2359 0.804989 AGAAAAGCGAAATGGCTCGG 59.195 50.000 0.00 0.00 43.93 4.63
854 2360 1.464608 TGAGAAAAGCGAAATGGCTCG 59.535 47.619 0.00 0.00 43.93 5.03
855 2361 3.559238 TTGAGAAAAGCGAAATGGCTC 57.441 42.857 0.00 0.00 43.93 4.70
887 2393 2.673893 GCGAAATGGCTCGGGAATTTTT 60.674 45.455 0.00 0.00 39.27 1.94
888 2394 1.135112 GCGAAATGGCTCGGGAATTTT 60.135 47.619 0.00 0.00 39.27 1.82
889 2395 0.455815 GCGAAATGGCTCGGGAATTT 59.544 50.000 0.00 0.00 39.27 1.82
890 2396 1.384222 GGCGAAATGGCTCGGGAATT 61.384 55.000 0.00 0.00 39.27 2.17
891 2397 1.823899 GGCGAAATGGCTCGGGAAT 60.824 57.895 0.00 0.00 39.27 3.01
892 2398 2.437716 GGCGAAATGGCTCGGGAA 60.438 61.111 0.00 0.00 39.27 3.97
893 2399 4.830765 CGGCGAAATGGCTCGGGA 62.831 66.667 0.00 0.00 42.02 5.14
895 2401 3.864686 CACGGCGAAATGGCTCGG 61.865 66.667 16.62 0.00 42.02 4.63
896 2402 1.355796 TTACACGGCGAAATGGCTCG 61.356 55.000 16.62 0.00 42.02 5.03
897 2403 0.096454 GTTACACGGCGAAATGGCTC 59.904 55.000 16.62 0.00 42.02 4.70
898 2404 0.321298 AGTTACACGGCGAAATGGCT 60.321 50.000 16.62 1.03 42.02 4.75
899 2405 0.179200 CAGTTACACGGCGAAATGGC 60.179 55.000 16.62 0.00 40.44 4.40
900 2406 0.179200 GCAGTTACACGGCGAAATGG 60.179 55.000 16.62 0.00 28.26 3.16
901 2407 3.290098 GCAGTTACACGGCGAAATG 57.710 52.632 16.62 8.53 28.26 2.32
948 2454 1.030488 GGGAGGCGGAAGGTTTTAGC 61.030 60.000 0.00 0.00 0.00 3.09
986 9889 4.899239 CCATGTCGGCGGCTCCTC 62.899 72.222 14.51 0.00 0.00 3.71
995 9898 2.511600 GCGAGGGTTCCATGTCGG 60.512 66.667 3.71 0.00 32.99 4.79
1253 10160 1.745141 GCATGAACAAGAGAGGGCGAT 60.745 52.381 0.00 0.00 0.00 4.58
1254 10161 0.391661 GCATGAACAAGAGAGGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
1255 10162 0.392193 AGCATGAACAAGAGAGGGCG 60.392 55.000 0.00 0.00 0.00 6.13
1256 10163 1.093159 CAGCATGAACAAGAGAGGGC 58.907 55.000 0.00 0.00 39.69 5.19
1257 10164 2.082231 CACAGCATGAACAAGAGAGGG 58.918 52.381 0.00 0.00 39.69 4.30
1258 10165 3.001414 CTCACAGCATGAACAAGAGAGG 58.999 50.000 0.00 0.00 39.69 3.69
1259 10166 3.922910 TCTCACAGCATGAACAAGAGAG 58.077 45.455 0.00 0.00 39.69 3.20
1260 10167 4.548451 ATCTCACAGCATGAACAAGAGA 57.452 40.909 0.00 2.31 39.69 3.10
1267 10174 2.759191 GGCGATATCTCACAGCATGAA 58.241 47.619 0.00 0.00 39.69 2.57
1295 10204 1.151777 CTACCATAACCGCGCCACAG 61.152 60.000 0.00 0.00 0.00 3.66
1301 10210 1.931172 CCAAAGTCTACCATAACCGCG 59.069 52.381 0.00 0.00 0.00 6.46
1319 10228 2.835431 CACCACCGGCCAAAACCA 60.835 61.111 0.00 0.00 0.00 3.67
1456 10366 1.849116 GTCCCATGCCCATCCATCT 59.151 57.895 0.00 0.00 0.00 2.90
1535 10445 4.060038 CAAAGCCCGCAAGCCCAG 62.060 66.667 0.00 0.00 0.00 4.45
1536 10446 4.912395 ACAAAGCCCGCAAGCCCA 62.912 61.111 0.00 0.00 0.00 5.36
1610 10520 3.533547 ACAGTACTCTAGAGTAGGCACG 58.466 50.000 29.00 18.25 43.84 5.34
1697 10607 8.179615 CCTCCGTAAAGAAATATAAAAGCGTTT 58.820 33.333 2.53 2.53 0.00 3.60
1698 10608 7.201670 CCCTCCGTAAAGAAATATAAAAGCGTT 60.202 37.037 0.00 0.00 0.00 4.84
1699 10609 6.259387 CCCTCCGTAAAGAAATATAAAAGCGT 59.741 38.462 0.00 0.00 0.00 5.07
1700 10610 6.480981 TCCCTCCGTAAAGAAATATAAAAGCG 59.519 38.462 0.00 0.00 0.00 4.68
1701 10611 7.498239 ACTCCCTCCGTAAAGAAATATAAAAGC 59.502 37.037 0.00 0.00 0.00 3.51
1702 10612 8.959705 ACTCCCTCCGTAAAGAAATATAAAAG 57.040 34.615 0.00 0.00 0.00 2.27
1704 10614 9.425248 TCTACTCCCTCCGTAAAGAAATATAAA 57.575 33.333 0.00 0.00 0.00 1.40
1705 10615 9.597681 ATCTACTCCCTCCGTAAAGAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
1706 10616 9.597681 AATCTACTCCCTCCGTAAAGAAATATA 57.402 33.333 0.00 0.00 0.00 0.86
1707 10617 8.493787 AATCTACTCCCTCCGTAAAGAAATAT 57.506 34.615 0.00 0.00 0.00 1.28
1708 10618 7.909485 AATCTACTCCCTCCGTAAAGAAATA 57.091 36.000 0.00 0.00 0.00 1.40
1709 10619 6.809976 AATCTACTCCCTCCGTAAAGAAAT 57.190 37.500 0.00 0.00 0.00 2.17
1710 10620 6.439692 AGAAATCTACTCCCTCCGTAAAGAAA 59.560 38.462 0.00 0.00 0.00 2.52
1711 10621 5.956563 AGAAATCTACTCCCTCCGTAAAGAA 59.043 40.000 0.00 0.00 0.00 2.52
1712 10622 5.516984 AGAAATCTACTCCCTCCGTAAAGA 58.483 41.667 0.00 0.00 0.00 2.52
1713 10623 5.855740 AGAAATCTACTCCCTCCGTAAAG 57.144 43.478 0.00 0.00 0.00 1.85
1714 10624 5.626116 GCAAGAAATCTACTCCCTCCGTAAA 60.626 44.000 0.00 0.00 0.00 2.01
1715 10625 4.142004 GCAAGAAATCTACTCCCTCCGTAA 60.142 45.833 0.00 0.00 0.00 3.18
1716 10626 3.383825 GCAAGAAATCTACTCCCTCCGTA 59.616 47.826 0.00 0.00 0.00 4.02
1717 10627 2.168728 GCAAGAAATCTACTCCCTCCGT 59.831 50.000 0.00 0.00 0.00 4.69
1718 10628 2.168521 TGCAAGAAATCTACTCCCTCCG 59.831 50.000 0.00 0.00 0.00 4.63
1719 10629 3.536570 GTGCAAGAAATCTACTCCCTCC 58.463 50.000 0.00 0.00 0.00 4.30
1720 10630 3.055094 TGGTGCAAGAAATCTACTCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
1721 10631 2.912956 TGGTGCAAGAAATCTACTCCCT 59.087 45.455 0.00 0.00 0.00 4.20
1722 10632 3.350219 TGGTGCAAGAAATCTACTCCC 57.650 47.619 0.00 0.00 0.00 4.30
1723 10633 4.265073 ACATGGTGCAAGAAATCTACTCC 58.735 43.478 0.00 0.00 0.00 3.85
1724 10634 5.874810 TGTACATGGTGCAAGAAATCTACTC 59.125 40.000 0.00 0.00 0.00 2.59
1725 10635 5.643777 GTGTACATGGTGCAAGAAATCTACT 59.356 40.000 0.00 0.00 28.81 2.57
1726 10636 5.411361 TGTGTACATGGTGCAAGAAATCTAC 59.589 40.000 0.00 0.00 28.81 2.59
1727 10637 5.555966 TGTGTACATGGTGCAAGAAATCTA 58.444 37.500 0.00 0.00 28.81 1.98
1728 10638 4.397420 TGTGTACATGGTGCAAGAAATCT 58.603 39.130 0.00 0.00 28.81 2.40
1729 10639 4.764679 TGTGTACATGGTGCAAGAAATC 57.235 40.909 0.00 0.00 28.81 2.17
1730 10640 5.726980 AATGTGTACATGGTGCAAGAAAT 57.273 34.783 0.00 0.00 36.56 2.17
1731 10641 5.528043 AAATGTGTACATGGTGCAAGAAA 57.472 34.783 0.00 0.00 36.56 2.52
1732 10642 5.288015 CAAAATGTGTACATGGTGCAAGAA 58.712 37.500 0.00 0.00 36.56 2.52
1733 10643 4.795635 GCAAAATGTGTACATGGTGCAAGA 60.796 41.667 19.90 0.00 42.16 3.02
1734 10644 3.429543 GCAAAATGTGTACATGGTGCAAG 59.570 43.478 19.90 2.73 42.16 4.01
1735 10645 3.069300 AGCAAAATGTGTACATGGTGCAA 59.931 39.130 23.70 0.00 43.65 4.08
1736 10646 2.627221 AGCAAAATGTGTACATGGTGCA 59.373 40.909 23.70 4.62 43.65 4.57
1737 10647 2.988493 CAGCAAAATGTGTACATGGTGC 59.012 45.455 18.31 18.31 42.55 5.01
1741 10651 4.456911 AGTCCTCAGCAAAATGTGTACATG 59.543 41.667 0.00 0.00 36.56 3.21
1744 10654 4.515191 TCAAGTCCTCAGCAAAATGTGTAC 59.485 41.667 0.00 0.00 0.00 2.90
1747 10657 3.567164 AGTCAAGTCCTCAGCAAAATGTG 59.433 43.478 0.00 0.00 0.00 3.21
1756 10668 4.065321 ACTTCAACAGTCAAGTCCTCAG 57.935 45.455 0.00 0.00 0.00 3.35
1775 10687 4.783227 ACATTCATAGACCCCAACAGTACT 59.217 41.667 0.00 0.00 0.00 2.73
1840 10760 0.626382 TATCCCCGCCAACAAATCCA 59.374 50.000 0.00 0.00 0.00 3.41
1882 10802 3.084039 ACCATGAACACACAAGGCATAG 58.916 45.455 0.00 0.00 32.70 2.23
1924 10846 5.480073 TGAGCAGCAAAGGTACCAAATTTAT 59.520 36.000 15.94 0.00 0.00 1.40
1945 10867 3.267031 AGGAACCTAAACCTCCCAATGAG 59.733 47.826 0.00 0.00 41.07 2.90
1984 10906 2.084546 GTCTGTGGGTTAACATCAGGC 58.915 52.381 8.10 9.81 0.00 4.85
2032 10954 5.465390 TCCTAGAAAATATCATTGTTCGGCG 59.535 40.000 0.00 0.00 0.00 6.46
2034 10956 8.607441 TCATCCTAGAAAATATCATTGTTCGG 57.393 34.615 0.00 0.00 0.00 4.30
2064 10986 8.949421 ACCACCCTATTATAGATGAGAACAAAT 58.051 33.333 0.03 0.00 0.00 2.32
2408 11336 0.249911 AACTCACCTGTCGCTCAACC 60.250 55.000 0.00 0.00 0.00 3.77
2423 11351 9.583765 CTGGAACCAGTAGTAAAGTTATAACTC 57.416 37.037 18.28 6.64 37.50 3.01
2458 11392 8.608844 TTCTTAGAGAACTGGAAAAGAATGTC 57.391 34.615 0.00 0.00 30.30 3.06
2460 11394 7.173907 TGCTTCTTAGAGAACTGGAAAAGAATG 59.826 37.037 0.00 0.00 33.77 2.67
2528 11463 2.600731 GGCGATATTCCACTCGATCAG 58.399 52.381 0.00 0.00 37.05 2.90
2529 11464 1.068541 CGGCGATATTCCACTCGATCA 60.069 52.381 0.00 0.00 37.05 2.92
2547 11482 0.391661 TAAGGAGAGCTGCAAAGCGG 60.392 55.000 1.02 0.00 40.27 5.52
2630 11568 5.665812 AGTACATGCTAAGAATCAGGGGTAA 59.334 40.000 0.00 0.00 0.00 2.85
2719 11657 4.761227 TGTTGATCATGACTTGCTTGCTAA 59.239 37.500 0.00 0.00 0.00 3.09
2732 11670 5.469760 TGTCCACTAGTTGTTGTTGATCATG 59.530 40.000 0.00 0.00 0.00 3.07
2772 11799 2.509336 GATCAGTCACGGGCACGG 60.509 66.667 15.46 0.91 46.48 4.94
2774 11801 2.103042 GCAGATCAGTCACGGGCAC 61.103 63.158 0.00 0.00 0.00 5.01
2775 11802 2.110757 TTGCAGATCAGTCACGGGCA 62.111 55.000 0.00 0.00 0.00 5.36
2776 11803 1.364626 CTTGCAGATCAGTCACGGGC 61.365 60.000 0.00 0.00 0.00 6.13
2777 11804 0.036952 ACTTGCAGATCAGTCACGGG 60.037 55.000 0.00 0.00 0.00 5.28
2778 11805 1.337167 TGACTTGCAGATCAGTCACGG 60.337 52.381 13.67 0.00 36.51 4.94
2822 11852 8.073768 CGAAGCCACGAACCAATATTATTTAAT 58.926 33.333 0.00 0.00 35.09 1.40
2843 11873 3.363341 AGAAGATAGCTAGCACGAAGC 57.637 47.619 18.83 1.92 46.19 3.86
2844 11874 9.464714 TTTAATAAGAAGATAGCTAGCACGAAG 57.535 33.333 18.83 0.00 0.00 3.79
2845 11875 9.245962 GTTTAATAAGAAGATAGCTAGCACGAA 57.754 33.333 18.83 0.00 0.00 3.85
2846 11876 7.866393 GGTTTAATAAGAAGATAGCTAGCACGA 59.134 37.037 18.83 1.50 0.00 4.35
2848 11878 8.888579 TGGTTTAATAAGAAGATAGCTAGCAC 57.111 34.615 18.83 7.96 0.00 4.40
2849 11879 9.494271 CATGGTTTAATAAGAAGATAGCTAGCA 57.506 33.333 18.83 3.19 0.00 3.49
2850 11880 9.495572 ACATGGTTTAATAAGAAGATAGCTAGC 57.504 33.333 6.62 6.62 0.00 3.42
2911 11941 6.053005 GCTAATTGTACTGTGCATAGGGTTA 58.947 40.000 15.46 5.54 0.00 2.85
2926 11956 6.939730 TGAAACAACTCAGGATGCTAATTGTA 59.060 34.615 9.39 0.00 34.76 2.41
2931 11961 4.973168 ACTGAAACAACTCAGGATGCTAA 58.027 39.130 5.65 0.00 46.02 3.09
3046 12245 3.196469 TCAGCCATCTCCTACAACAAGAG 59.804 47.826 0.00 0.00 0.00 2.85
3125 12324 3.004734 CAGTTTGGGATCGTTCAAAGCTT 59.995 43.478 0.00 0.00 34.11 3.74
3134 12333 3.267483 CGAATAACCAGTTTGGGATCGT 58.733 45.455 0.00 0.00 43.37 3.73
3370 12569 1.608025 GGCAGTGTCAAGGTTGATCGA 60.608 52.381 0.00 0.00 39.73 3.59
3433 12632 2.419851 CCTGGTGCTCAGAAAGGATCTC 60.420 54.545 8.81 0.00 46.18 2.75
3679 12878 3.493699 CCCAGAACGAGTGTTTTCAGGTA 60.494 47.826 0.00 0.00 38.78 3.08
3723 12922 2.111384 GAGAGAATGCTGTGGAGGGTA 58.889 52.381 0.00 0.00 0.00 3.69
3815 13014 1.478510 CACCGATGCTCCTAAGTGTCT 59.521 52.381 0.00 0.00 0.00 3.41
3841 13040 3.154710 CACTCATGCTGCCCATATCATT 58.845 45.455 0.00 0.00 31.47 2.57
4006 13205 5.009610 TGGTTCCAAGCTTGAGTTTATCAAC 59.990 40.000 28.05 14.56 43.09 3.18
4074 13273 0.721718 GTCAGTGTATGCTTCGTGGC 59.278 55.000 0.00 0.00 0.00 5.01
4139 13338 2.086869 ACCTCGCATCAACATTTCCAG 58.913 47.619 0.00 0.00 0.00 3.86
4172 13371 2.679082 AGGGCCACTAGACGTGATATT 58.321 47.619 6.18 0.00 46.81 1.28
4313 13512 8.739972 AGGTAAAACAATGACTGATTGGATAAC 58.260 33.333 0.00 0.00 45.20 1.89
4479 13678 9.636879 CTTCAACTCTACATATCTGATATGGTG 57.363 37.037 30.79 24.01 45.36 4.17
4523 13722 4.385825 ACTTAGCAAAGTCAACATCCGAA 58.614 39.130 0.00 0.00 42.42 4.30
4524 13723 4.002906 ACTTAGCAAAGTCAACATCCGA 57.997 40.909 0.00 0.00 42.42 4.55
4555 13754 1.089920 CTCAAGCGCCTTAGCATTGT 58.910 50.000 2.29 0.00 39.83 2.71
4652 13852 1.101331 GAGCATTTGGAGAAGCCCTG 58.899 55.000 0.00 0.00 34.97 4.45
5047 14249 9.764363 ATCAATACACGATATAAGAAAGAAGCA 57.236 29.630 0.00 0.00 0.00 3.91
5076 14278 7.117812 CACTCGTTTTATGTCTTCCATAACACT 59.882 37.037 8.74 0.00 43.92 3.55
5100 14302 1.374758 CTCCAACAGCTCCGACCAC 60.375 63.158 0.00 0.00 0.00 4.16
5144 14346 2.368875 AGGACGAGACAAGAACCACAAT 59.631 45.455 0.00 0.00 0.00 2.71
5220 14422 0.950116 GATGCTCTAAGGCCATGCAC 59.050 55.000 5.01 0.00 36.44 4.57
5222 14424 1.878734 GAAGATGCTCTAAGGCCATGC 59.121 52.381 5.01 1.66 0.00 4.06
5236 14438 1.522668 TTGGGCGTCTGTTGAAGATG 58.477 50.000 0.00 0.00 43.79 2.90
5238 14440 2.045561 TTTTGGGCGTCTGTTGAAGA 57.954 45.000 0.00 0.00 0.00 2.87
5239 14441 2.099098 AGTTTTTGGGCGTCTGTTGAAG 59.901 45.455 0.00 0.00 0.00 3.02
5240 14442 2.096248 AGTTTTTGGGCGTCTGTTGAA 58.904 42.857 0.00 0.00 0.00 2.69
5241 14443 1.403679 CAGTTTTTGGGCGTCTGTTGA 59.596 47.619 0.00 0.00 0.00 3.18
5242 14444 1.535860 CCAGTTTTTGGGCGTCTGTTG 60.536 52.381 0.00 0.00 43.75 3.33
5243 14445 0.744281 CCAGTTTTTGGGCGTCTGTT 59.256 50.000 0.00 0.00 43.75 3.16
5244 14446 2.414750 CCAGTTTTTGGGCGTCTGT 58.585 52.632 0.00 0.00 43.75 3.41
5253 14455 2.354539 CGCACGGCCCAGTTTTTG 60.355 61.111 0.00 0.00 0.00 2.44
5254 14456 4.279043 GCGCACGGCCCAGTTTTT 62.279 61.111 0.30 0.00 34.80 1.94
5255 14457 3.835790 TAGCGCACGGCCCAGTTTT 62.836 57.895 11.47 0.00 45.17 2.43
5256 14458 3.835790 TTAGCGCACGGCCCAGTTT 62.836 57.895 11.47 0.00 45.17 2.66
5257 14459 3.835790 TTTAGCGCACGGCCCAGTT 62.836 57.895 11.47 0.00 45.17 3.16
5258 14460 3.835790 TTTTAGCGCACGGCCCAGT 62.836 57.895 11.47 0.00 45.17 4.00
5259 14461 2.322999 GATTTTAGCGCACGGCCCAG 62.323 60.000 11.47 0.00 45.17 4.45
5260 14462 2.360600 ATTTTAGCGCACGGCCCA 60.361 55.556 11.47 0.00 45.17 5.36
5261 14463 2.407616 GATTTTAGCGCACGGCCC 59.592 61.111 11.47 0.00 45.17 5.80
5262 14464 2.407616 GGATTTTAGCGCACGGCC 59.592 61.111 11.47 0.00 45.17 6.13
5263 14465 2.022762 CGGATTTTAGCGCACGGC 59.977 61.111 11.47 0.00 44.05 5.68
5264 14466 1.082117 ACTCGGATTTTAGCGCACGG 61.082 55.000 11.47 0.00 0.00 4.94
5265 14467 0.719465 AACTCGGATTTTAGCGCACG 59.281 50.000 11.47 2.20 0.00 5.34
5266 14468 2.894307 AAACTCGGATTTTAGCGCAC 57.106 45.000 11.47 0.00 0.00 5.34
5267 14469 3.907894 AAAAACTCGGATTTTAGCGCA 57.092 38.095 11.47 0.00 31.50 6.09
5284 14486 2.548295 GCTGTCCGGCGTCCAAAAA 61.548 57.895 6.01 0.00 0.00 1.94
5285 14487 2.975799 GCTGTCCGGCGTCCAAAA 60.976 61.111 6.01 0.00 0.00 2.44
5286 14488 3.876589 GAGCTGTCCGGCGTCCAAA 62.877 63.158 6.01 0.00 37.29 3.28
5287 14489 4.373116 GAGCTGTCCGGCGTCCAA 62.373 66.667 6.01 0.00 37.29 3.53
5296 14498 1.744741 GCTTCTGCTGGAGCTGTCC 60.745 63.158 16.22 0.00 44.24 4.02
5297 14499 3.887783 GCTTCTGCTGGAGCTGTC 58.112 61.111 16.22 0.00 42.66 3.51
5315 14517 4.711193 CGCGCGCGCTGTTTTACA 62.711 61.111 45.97 0.00 39.32 2.41
5327 14529 4.639171 AACCCCTTTTTGCGCGCG 62.639 61.111 28.44 28.44 0.00 6.86
5328 14530 3.035503 CAACCCCTTTTTGCGCGC 61.036 61.111 27.26 27.26 0.00 6.86
5329 14531 1.948635 CACAACCCCTTTTTGCGCG 60.949 57.895 0.00 0.00 0.00 6.86
5330 14532 2.243957 GCACAACCCCTTTTTGCGC 61.244 57.895 0.00 0.00 0.00 6.09
5331 14533 4.026226 GCACAACCCCTTTTTGCG 57.974 55.556 0.00 0.00 0.00 4.85
5332 14534 2.243957 GCGCACAACCCCTTTTTGC 61.244 57.895 0.30 0.00 0.00 3.68
5333 14535 1.948635 CGCGCACAACCCCTTTTTG 60.949 57.895 8.75 0.00 0.00 2.44
5334 14536 2.415426 CGCGCACAACCCCTTTTT 59.585 55.556 8.75 0.00 0.00 1.94
5335 14537 3.601685 CCGCGCACAACCCCTTTT 61.602 61.111 8.75 0.00 0.00 2.27
5341 14543 2.615262 TTTTCAACCCGCGCACAACC 62.615 55.000 8.75 0.00 0.00 3.77
5342 14544 0.802607 TTTTTCAACCCGCGCACAAC 60.803 50.000 8.75 0.00 0.00 3.32
5343 14545 0.103208 ATTTTTCAACCCGCGCACAA 59.897 45.000 8.75 0.00 0.00 3.33
5344 14546 0.596083 CATTTTTCAACCCGCGCACA 60.596 50.000 8.75 0.00 0.00 4.57
5345 14547 1.885814 GCATTTTTCAACCCGCGCAC 61.886 55.000 8.75 0.00 0.00 5.34
5346 14548 1.663074 GCATTTTTCAACCCGCGCA 60.663 52.632 8.75 0.00 0.00 6.09
5347 14549 0.109504 TAGCATTTTTCAACCCGCGC 60.110 50.000 0.00 0.00 0.00 6.86
5348 14550 2.159448 TGATAGCATTTTTCAACCCGCG 60.159 45.455 0.00 0.00 0.00 6.46
5349 14551 3.502191 TGATAGCATTTTTCAACCCGC 57.498 42.857 0.00 0.00 0.00 6.13
5350 14552 5.163963 GCTTTTGATAGCATTTTTCAACCCG 60.164 40.000 0.00 0.00 40.89 5.28
5351 14553 5.934043 AGCTTTTGATAGCATTTTTCAACCC 59.066 36.000 0.00 0.00 43.68 4.11
5352 14554 6.619232 GCAGCTTTTGATAGCATTTTTCAACC 60.619 38.462 0.00 0.00 43.68 3.77
5353 14555 6.073657 TGCAGCTTTTGATAGCATTTTTCAAC 60.074 34.615 0.00 0.00 43.68 3.18
5354 14556 5.990386 TGCAGCTTTTGATAGCATTTTTCAA 59.010 32.000 0.00 0.00 43.68 2.69
5355 14557 5.539979 TGCAGCTTTTGATAGCATTTTTCA 58.460 33.333 0.00 0.00 43.68 2.69
5356 14558 6.470557 TTGCAGCTTTTGATAGCATTTTTC 57.529 33.333 0.00 0.00 43.68 2.29
5357 14559 6.864360 TTTGCAGCTTTTGATAGCATTTTT 57.136 29.167 0.00 0.00 43.68 1.94
5358 14560 7.443259 AATTTGCAGCTTTTGATAGCATTTT 57.557 28.000 0.00 0.00 43.68 1.82
5359 14561 7.173562 TCAAATTTGCAGCTTTTGATAGCATTT 59.826 29.630 13.54 0.00 43.68 2.32
5360 14562 6.651643 TCAAATTTGCAGCTTTTGATAGCATT 59.348 30.769 13.54 0.00 43.68 3.56
5361 14563 6.167685 TCAAATTTGCAGCTTTTGATAGCAT 58.832 32.000 13.54 0.00 43.68 3.79
5362 14564 5.539979 TCAAATTTGCAGCTTTTGATAGCA 58.460 33.333 13.54 0.00 43.68 3.49
5363 14565 6.470557 TTCAAATTTGCAGCTTTTGATAGC 57.529 33.333 13.54 0.00 38.68 2.97
5364 14566 6.531439 GCTTCAAATTTGCAGCTTTTGATAG 58.469 36.000 28.40 16.07 42.81 2.08
5365 14567 5.118971 CGCTTCAAATTTGCAGCTTTTGATA 59.881 36.000 30.84 3.00 43.71 2.15
5366 14568 4.084223 CGCTTCAAATTTGCAGCTTTTGAT 60.084 37.500 30.84 0.00 43.71 2.57
5367 14569 3.245754 CGCTTCAAATTTGCAGCTTTTGA 59.754 39.130 30.84 13.54 43.71 2.69
5368 14570 3.537806 CGCTTCAAATTTGCAGCTTTTG 58.462 40.909 30.84 17.28 43.71 2.44
5369 14571 2.032636 GCGCTTCAAATTTGCAGCTTTT 60.033 40.909 30.84 0.00 43.71 2.27
5370 14572 1.528161 GCGCTTCAAATTTGCAGCTTT 59.472 42.857 30.84 0.00 43.71 3.51
5371 14573 1.142474 GCGCTTCAAATTTGCAGCTT 58.858 45.000 30.84 0.00 43.71 3.74
5372 14574 0.668401 GGCGCTTCAAATTTGCAGCT 60.668 50.000 30.84 0.00 43.71 4.24
5373 14575 1.783434 GGCGCTTCAAATTTGCAGC 59.217 52.632 26.67 26.67 42.71 5.25
5374 14576 1.346378 CCGGCGCTTCAAATTTGCAG 61.346 55.000 13.54 13.14 0.00 4.41
5375 14577 1.372748 CCGGCGCTTCAAATTTGCA 60.373 52.632 13.54 1.37 0.00 4.08
5376 14578 0.458370 ATCCGGCGCTTCAAATTTGC 60.458 50.000 13.54 1.00 0.00 3.68
5377 14579 1.655099 CAATCCGGCGCTTCAAATTTG 59.345 47.619 12.15 12.15 0.00 2.32
5378 14580 1.994916 CAATCCGGCGCTTCAAATTT 58.005 45.000 7.64 0.00 0.00 1.82
5379 14581 0.458370 GCAATCCGGCGCTTCAAATT 60.458 50.000 7.64 0.00 0.00 1.82
5380 14582 1.139520 GCAATCCGGCGCTTCAAAT 59.860 52.632 7.64 0.00 0.00 2.32
5381 14583 2.566010 GCAATCCGGCGCTTCAAA 59.434 55.556 7.64 0.00 0.00 2.69
5391 14593 4.520846 GTGAAGGCGCGCAATCCG 62.521 66.667 34.42 0.00 40.75 4.18
5392 14594 2.270297 ATTGTGAAGGCGCGCAATCC 62.270 55.000 34.42 21.21 43.36 3.01
5393 14595 0.456653 AATTGTGAAGGCGCGCAATC 60.457 50.000 34.42 28.14 45.34 2.67
5394 14596 3.277133 ATTGTGAAGGCGCGCAAT 58.723 50.000 34.42 21.21 42.39 3.56
5395 14597 0.593618 TAAATTGTGAAGGCGCGCAA 59.406 45.000 34.42 17.93 41.85 4.85
5396 14598 0.109964 GTAAATTGTGAAGGCGCGCA 60.110 50.000 34.42 11.01 0.00 6.09
5397 14599 0.109964 TGTAAATTGTGAAGGCGCGC 60.110 50.000 25.94 25.94 0.00 6.86
5398 14600 1.196808 AGTGTAAATTGTGAAGGCGCG 59.803 47.619 0.00 0.00 0.00 6.86
5399 14601 2.584791 CAGTGTAAATTGTGAAGGCGC 58.415 47.619 0.00 0.00 0.00 6.53
5400 14602 2.584791 GCAGTGTAAATTGTGAAGGCG 58.415 47.619 0.00 0.00 0.00 5.52
5401 14603 2.031157 ACGCAGTGTAAATTGTGAAGGC 60.031 45.455 0.00 0.00 42.51 4.35
5402 14604 3.896648 ACGCAGTGTAAATTGTGAAGG 57.103 42.857 0.00 0.00 42.51 3.46
5417 14619 1.370414 CGCCCAAAAGAACACGCAG 60.370 57.895 0.00 0.00 0.00 5.18
5418 14620 2.718731 CGCCCAAAAGAACACGCA 59.281 55.556 0.00 0.00 0.00 5.24
5419 14621 2.729491 GCGCCCAAAAGAACACGC 60.729 61.111 0.00 0.00 39.49 5.34
5420 14622 2.426752 CGCGCCCAAAAGAACACG 60.427 61.111 0.00 0.00 0.00 4.49
5421 14623 2.729491 GCGCGCCCAAAAGAACAC 60.729 61.111 23.24 0.00 0.00 3.32
5422 14624 4.320928 CGCGCGCCCAAAAGAACA 62.321 61.111 27.72 0.00 0.00 3.18
5423 14625 3.817274 AACGCGCGCCCAAAAGAAC 62.817 57.895 32.58 0.00 0.00 3.01
5424 14626 2.615262 AAAACGCGCGCCCAAAAGAA 62.615 50.000 32.58 0.00 0.00 2.52
5425 14627 2.615262 AAAAACGCGCGCCCAAAAGA 62.615 50.000 32.58 0.00 0.00 2.52
5426 14628 2.234335 AAAAACGCGCGCCCAAAAG 61.234 52.632 32.58 13.10 0.00 2.27
5427 14629 2.202756 AAAAACGCGCGCCCAAAA 60.203 50.000 32.58 0.00 0.00 2.44
5428 14630 2.956964 CAAAAACGCGCGCCCAAA 60.957 55.556 32.58 0.00 0.00 3.28
5429 14631 4.933064 CCAAAAACGCGCGCCCAA 62.933 61.111 32.58 0.00 0.00 4.12
5434 14636 3.171911 GATGCCCAAAAACGCGCG 61.172 61.111 30.96 30.96 0.00 6.86
5435 14637 2.088178 CAGATGCCCAAAAACGCGC 61.088 57.895 5.73 0.00 0.00 6.86
5436 14638 2.088178 GCAGATGCCCAAAAACGCG 61.088 57.895 3.53 3.53 34.31 6.01
5437 14639 2.088178 CGCAGATGCCCAAAAACGC 61.088 57.895 0.00 0.00 37.91 4.84
5438 14640 0.039617 TTCGCAGATGCCCAAAAACG 60.040 50.000 0.00 0.00 37.91 3.60
5439 14641 2.061028 CTTTCGCAGATGCCCAAAAAC 58.939 47.619 0.00 0.00 37.91 2.43
5440 14642 1.686052 ACTTTCGCAGATGCCCAAAAA 59.314 42.857 0.00 0.00 37.91 1.94
5441 14643 1.327303 ACTTTCGCAGATGCCCAAAA 58.673 45.000 0.00 0.00 37.91 2.44
5442 14644 2.192664 TACTTTCGCAGATGCCCAAA 57.807 45.000 0.00 0.00 37.91 3.28
5443 14645 1.810151 GTTACTTTCGCAGATGCCCAA 59.190 47.619 0.00 0.00 37.91 4.12
5444 14646 1.448985 GTTACTTTCGCAGATGCCCA 58.551 50.000 0.00 0.00 37.91 5.36
5445 14647 0.373716 CGTTACTTTCGCAGATGCCC 59.626 55.000 0.00 0.00 37.91 5.36
5446 14648 1.076332 ACGTTACTTTCGCAGATGCC 58.924 50.000 0.00 0.00 37.91 4.40
5447 14649 2.495939 CAACGTTACTTTCGCAGATGC 58.504 47.619 0.00 0.00 35.04 3.91
5448 14650 2.159707 CCCAACGTTACTTTCGCAGATG 60.160 50.000 0.00 0.00 35.04 2.90
5449 14651 2.073816 CCCAACGTTACTTTCGCAGAT 58.926 47.619 0.00 0.00 35.04 2.90
5450 14652 1.202557 ACCCAACGTTACTTTCGCAGA 60.203 47.619 0.00 0.00 0.00 4.26
5451 14653 1.193874 GACCCAACGTTACTTTCGCAG 59.806 52.381 0.00 0.00 0.00 5.18
5452 14654 1.202557 AGACCCAACGTTACTTTCGCA 60.203 47.619 0.00 0.00 0.00 5.10
5453 14655 1.193874 CAGACCCAACGTTACTTTCGC 59.806 52.381 0.00 0.00 0.00 4.70
5454 14656 2.473984 GTCAGACCCAACGTTACTTTCG 59.526 50.000 0.00 0.00 0.00 3.46
5455 14657 2.804527 GGTCAGACCCAACGTTACTTTC 59.195 50.000 8.65 0.00 30.04 2.62
5456 14658 2.842457 GGTCAGACCCAACGTTACTTT 58.158 47.619 8.65 0.00 30.04 2.66
5457 14659 2.538512 GGTCAGACCCAACGTTACTT 57.461 50.000 8.65 0.00 30.04 2.24
5468 14670 2.152016 GCACTTTTAGTGGGTCAGACC 58.848 52.381 11.70 11.70 46.01 3.85
5469 14671 3.127425 AGCACTTTTAGTGGGTCAGAC 57.873 47.619 8.73 0.00 46.01 3.51
5470 14672 4.157246 TCTAGCACTTTTAGTGGGTCAGA 58.843 43.478 8.73 0.00 46.01 3.27
5471 14673 4.021016 ACTCTAGCACTTTTAGTGGGTCAG 60.021 45.833 8.73 0.07 46.01 3.51
5472 14674 3.901844 ACTCTAGCACTTTTAGTGGGTCA 59.098 43.478 8.73 0.00 46.01 4.02
5473 14675 4.021368 TCACTCTAGCACTTTTAGTGGGTC 60.021 45.833 8.73 0.00 46.01 4.46
5474 14676 3.901844 TCACTCTAGCACTTTTAGTGGGT 59.098 43.478 8.73 0.00 46.01 4.51
5475 14677 4.246458 GTCACTCTAGCACTTTTAGTGGG 58.754 47.826 8.73 0.00 46.01 4.61
5476 14678 3.921021 CGTCACTCTAGCACTTTTAGTGG 59.079 47.826 8.73 0.00 46.01 4.00
5478 14680 3.576648 GCGTCACTCTAGCACTTTTAGT 58.423 45.455 0.00 0.00 0.00 2.24
5479 14681 2.594654 CGCGTCACTCTAGCACTTTTAG 59.405 50.000 0.00 0.00 0.00 1.85
5480 14682 2.592194 CGCGTCACTCTAGCACTTTTA 58.408 47.619 0.00 0.00 0.00 1.52
5481 14683 1.419374 CGCGTCACTCTAGCACTTTT 58.581 50.000 0.00 0.00 0.00 2.27
5482 14684 1.009389 GCGCGTCACTCTAGCACTTT 61.009 55.000 8.43 0.00 0.00 2.66
5483 14685 1.444553 GCGCGTCACTCTAGCACTT 60.445 57.895 8.43 0.00 0.00 3.16
5484 14686 1.025113 TAGCGCGTCACTCTAGCACT 61.025 55.000 8.43 0.00 0.00 4.40
5485 14687 0.179171 TTAGCGCGTCACTCTAGCAC 60.179 55.000 8.43 0.00 0.00 4.40
5486 14688 0.524414 TTTAGCGCGTCACTCTAGCA 59.476 50.000 8.43 0.00 0.00 3.49
5487 14689 1.320852 GTTTTAGCGCGTCACTCTAGC 59.679 52.381 8.43 0.00 0.00 3.42
5488 14690 2.864968 AGTTTTAGCGCGTCACTCTAG 58.135 47.619 8.43 0.00 0.00 2.43
5489 14691 4.627611 ATAGTTTTAGCGCGTCACTCTA 57.372 40.909 8.43 4.85 0.00 2.43
5490 14692 3.505464 ATAGTTTTAGCGCGTCACTCT 57.495 42.857 8.43 0.00 0.00 3.24
5491 14693 4.579270 AAATAGTTTTAGCGCGTCACTC 57.421 40.909 8.43 0.00 0.00 3.51
5492 14694 5.063060 CCTAAAATAGTTTTAGCGCGTCACT 59.937 40.000 8.43 5.76 46.75 3.41
5493 14695 5.062558 TCCTAAAATAGTTTTAGCGCGTCAC 59.937 40.000 8.43 0.00 46.75 3.67
5494 14696 5.062558 GTCCTAAAATAGTTTTAGCGCGTCA 59.937 40.000 8.43 0.00 46.75 4.35
5495 14697 5.487581 GTCCTAAAATAGTTTTAGCGCGTC 58.512 41.667 8.43 0.00 46.75 5.19
5496 14698 4.032104 CGTCCTAAAATAGTTTTAGCGCGT 59.968 41.667 8.43 0.00 46.75 6.01
5497 14699 4.502558 CGTCCTAAAATAGTTTTAGCGCG 58.497 43.478 0.00 0.00 46.75 6.86
5498 14700 4.269312 GCGTCCTAAAATAGTTTTAGCGC 58.731 43.478 20.37 20.37 46.56 5.92
5499 14701 5.459110 TGCGTCCTAAAATAGTTTTAGCG 57.541 39.130 13.91 13.51 46.75 4.26
5500 14702 8.683550 ATTTTGCGTCCTAAAATAGTTTTAGC 57.316 30.769 13.91 6.84 46.75 3.09
5507 14709 9.900264 GCATAAAAATTTTGCGTCCTAAAATAG 57.100 29.630 3.73 0.00 36.89 1.73
5508 14710 9.424319 TGCATAAAAATTTTGCGTCCTAAAATA 57.576 25.926 3.73 0.00 36.89 1.40
5509 14711 8.227119 GTGCATAAAAATTTTGCGTCCTAAAAT 58.773 29.630 3.73 0.00 38.88 1.82
5510 14712 7.307455 GGTGCATAAAAATTTTGCGTCCTAAAA 60.307 33.333 3.73 0.00 39.23 1.52
5511 14713 6.146347 GGTGCATAAAAATTTTGCGTCCTAAA 59.854 34.615 3.73 0.00 39.23 1.85
5512 14714 5.635700 GGTGCATAAAAATTTTGCGTCCTAA 59.364 36.000 3.73 0.00 39.23 2.69
5513 14715 5.047660 AGGTGCATAAAAATTTTGCGTCCTA 60.048 36.000 19.24 4.81 39.63 2.94
5514 14716 3.993736 GGTGCATAAAAATTTTGCGTCCT 59.006 39.130 3.73 0.00 39.23 3.85
5515 14717 3.993736 AGGTGCATAAAAATTTTGCGTCC 59.006 39.130 3.73 10.72 39.23 4.79
5516 14718 4.447389 ACAGGTGCATAAAAATTTTGCGTC 59.553 37.500 3.73 2.64 39.23 5.19
5517 14719 4.376146 ACAGGTGCATAAAAATTTTGCGT 58.624 34.783 3.73 0.00 39.23 5.24
5518 14720 4.988708 ACAGGTGCATAAAAATTTTGCG 57.011 36.364 3.73 0.00 39.23 4.85
5519 14721 5.238214 TCCAACAGGTGCATAAAAATTTTGC 59.762 36.000 3.73 5.29 36.91 3.68
5520 14722 6.705381 TCTCCAACAGGTGCATAAAAATTTTG 59.295 34.615 3.73 0.00 0.00 2.44
5521 14723 6.825610 TCTCCAACAGGTGCATAAAAATTTT 58.174 32.000 0.00 0.00 0.00 1.82
5522 14724 6.418057 TCTCCAACAGGTGCATAAAAATTT 57.582 33.333 0.00 0.00 0.00 1.82
5523 14725 6.400568 CATCTCCAACAGGTGCATAAAAATT 58.599 36.000 0.00 0.00 0.00 1.82
5524 14726 5.969423 CATCTCCAACAGGTGCATAAAAAT 58.031 37.500 0.00 0.00 0.00 1.82
5525 14727 5.389859 CATCTCCAACAGGTGCATAAAAA 57.610 39.130 0.00 0.00 0.00 1.94
5544 14746 8.694394 GTTGAGTTTCATTTTTGTAAGAGCATC 58.306 33.333 0.00 0.00 0.00 3.91
5545 14747 7.379529 CGTTGAGTTTCATTTTTGTAAGAGCAT 59.620 33.333 0.00 0.00 0.00 3.79
5546 14748 6.690957 CGTTGAGTTTCATTTTTGTAAGAGCA 59.309 34.615 0.00 0.00 0.00 4.26
5547 14749 6.345015 GCGTTGAGTTTCATTTTTGTAAGAGC 60.345 38.462 0.00 0.00 0.00 4.09
5548 14750 6.690957 TGCGTTGAGTTTCATTTTTGTAAGAG 59.309 34.615 0.00 0.00 0.00 2.85
5549 14751 6.556212 TGCGTTGAGTTTCATTTTTGTAAGA 58.444 32.000 0.00 0.00 0.00 2.10
5550 14752 6.804534 TGCGTTGAGTTTCATTTTTGTAAG 57.195 33.333 0.00 0.00 0.00 2.34
5551 14753 6.975197 TCATGCGTTGAGTTTCATTTTTGTAA 59.025 30.769 0.00 0.00 0.00 2.41
5552 14754 6.499172 TCATGCGTTGAGTTTCATTTTTGTA 58.501 32.000 0.00 0.00 0.00 2.41
5553 14755 5.347342 TCATGCGTTGAGTTTCATTTTTGT 58.653 33.333 0.00 0.00 0.00 2.83
5554 14756 5.886715 TCATGCGTTGAGTTTCATTTTTG 57.113 34.783 0.00 0.00 0.00 2.44
5593 14795 2.036958 TCGGAACCTATGTTGCATGG 57.963 50.000 3.53 0.00 42.41 3.66
5655 14857 3.456277 CCTAATCTTCTGTACTTGGGGCT 59.544 47.826 0.00 0.00 0.00 5.19
5683 14885 1.914634 ACATCGTTGAGTGATCTCGC 58.085 50.000 0.00 0.00 43.09 5.03
5702 14904 6.298361 TGATCCAATCACTTCAGAGTTCAAA 58.702 36.000 0.00 0.00 33.59 2.69
5703 14905 5.868454 TGATCCAATCACTTCAGAGTTCAA 58.132 37.500 0.00 0.00 33.59 2.69
5704 14906 5.485620 CTGATCCAATCACTTCAGAGTTCA 58.514 41.667 0.00 0.00 38.25 3.18
5705 14907 4.332268 GCTGATCCAATCACTTCAGAGTTC 59.668 45.833 3.11 0.00 38.25 3.01
5706 14908 4.260170 GCTGATCCAATCACTTCAGAGTT 58.740 43.478 3.11 0.00 38.25 3.01
5707 14909 3.262660 TGCTGATCCAATCACTTCAGAGT 59.737 43.478 3.11 0.00 38.25 3.24
5708 14910 3.870274 TGCTGATCCAATCACTTCAGAG 58.130 45.455 3.11 0.00 38.25 3.35
5753 14955 0.447801 GATGCACGGAAAAGCGACAT 59.552 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.