Multiple sequence alignment - TraesCS1A01G226300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G226300 chr1A 100.000 5876 0 0 1 5876 396433110 396427235 0.000000e+00 10852.0
1 TraesCS1A01G226300 chr1B 94.910 2456 93 14 3371 5809 428070874 428068434 0.000000e+00 3814.0
2 TraesCS1A01G226300 chr1B 91.481 2735 127 37 1 2678 428074252 428071567 0.000000e+00 3663.0
3 TraesCS1A01G226300 chr1B 94.872 663 28 5 2673 3334 428071532 428070875 0.000000e+00 1031.0
4 TraesCS1A01G226300 chr1B 82.500 160 14 10 4698 4852 630935613 630935463 1.720000e-25 128.0
5 TraesCS1A01G226300 chr1B 93.750 48 3 0 4618 4665 630935659 630935612 8.170000e-09 73.1
6 TraesCS1A01G226300 chr1D 96.229 2042 68 8 3371 5407 315980620 315978583 0.000000e+00 3336.0
7 TraesCS1A01G226300 chr1D 91.879 2315 113 28 1 2276 315984138 315981860 0.000000e+00 3164.0
8 TraesCS1A01G226300 chr1D 94.542 1081 46 5 2264 3334 315981698 315980621 0.000000e+00 1657.0
9 TraesCS1A01G226300 chr1D 94.211 380 21 1 5494 5872 315978588 315978209 3.950000e-161 579.0
10 TraesCS1A01G226300 chr5B 91.429 140 11 1 4527 4666 702235123 702234985 2.160000e-44 191.0
11 TraesCS1A01G226300 chr4D 94.048 84 5 0 5404 5487 497058712 497058795 1.720000e-25 128.0
12 TraesCS1A01G226300 chr4D 89.655 87 8 1 5404 5490 504090794 504090709 6.230000e-20 110.0
13 TraesCS1A01G226300 chr5D 89.474 95 9 1 5394 5487 498655274 498655368 1.030000e-22 119.0
14 TraesCS1A01G226300 chr5D 91.667 84 6 1 5404 5487 122198431 122198513 1.340000e-21 115.0
15 TraesCS1A01G226300 chr5A 89.362 94 10 0 5394 5487 131645818 131645725 1.030000e-22 119.0
16 TraesCS1A01G226300 chr3D 91.667 84 7 0 5404 5487 437189809 437189892 3.720000e-22 117.0
17 TraesCS1A01G226300 chr6D 90.476 84 8 0 5404 5487 39676415 39676498 1.730000e-20 111.0
18 TraesCS1A01G226300 chr6A 90.476 84 8 0 5404 5487 616434185 616434268 1.730000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G226300 chr1A 396427235 396433110 5875 True 10852 10852 100.000000 1 5876 1 chr1A.!!$R1 5875
1 TraesCS1A01G226300 chr1B 428068434 428074252 5818 True 2836 3814 93.754333 1 5809 3 chr1B.!!$R1 5808
2 TraesCS1A01G226300 chr1D 315978209 315984138 5929 True 2184 3336 94.215250 1 5872 4 chr1D.!!$R1 5871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 478 0.250467 ACACGCAGCCATTTGAGTCT 60.250 50.0 0.0 0.0 0.00 3.24 F
2452 2681 0.109597 GAACGGTGAAGGCTGCATTG 60.110 55.0 3.5 0.0 0.00 2.82 F
4005 4286 0.179124 GGAGTAAGAGCTGGTGCGAG 60.179 60.0 0.0 0.0 45.42 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2454 2683 0.250124 ACGCGTCCAGATGTTTTCCA 60.250 50.0 5.58 0.0 0.00 3.53 R
4046 4327 0.107508 CGGATGCCTTCCTCATGTGT 60.108 55.0 0.00 0.0 42.99 3.72 R
5537 5830 0.671781 TCAGAGCGCAAAAGGAGAGC 60.672 55.0 11.47 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.324991 GGGGCCGTTCGGTCAGTT 62.325 66.667 17.39 0.00 0.00 3.16
215 216 4.856801 ATTGCTACGCTGGGCCCG 62.857 66.667 19.37 13.51 0.00 6.13
239 240 4.980805 GGTGACGTGGCAGCGGAA 62.981 66.667 12.66 0.09 35.98 4.30
279 280 2.048222 TGGCCTTGTCTCGCGAAG 60.048 61.111 11.33 4.10 0.00 3.79
317 322 6.539103 ACAGGAGTAAACAAGTTCTCTGAAAC 59.461 38.462 0.00 0.00 0.00 2.78
320 325 8.652290 AGGAGTAAACAAGTTCTCTGAAACTAT 58.348 33.333 5.92 0.00 38.52 2.12
447 458 1.073199 GACACTTGGGTCCCACCAG 59.927 63.158 11.24 9.29 42.47 4.00
467 478 0.250467 ACACGCAGCCATTTGAGTCT 60.250 50.000 0.00 0.00 0.00 3.24
530 541 0.526524 GGTGTCGAGAATCCAGAGCG 60.527 60.000 0.00 0.00 0.00 5.03
570 581 1.770749 AACCAACCCCGTCCATTCGA 61.771 55.000 0.00 0.00 0.00 3.71
571 582 1.449601 CCAACCCCGTCCATTCGAG 60.450 63.158 0.00 0.00 0.00 4.04
572 583 1.295423 CAACCCCGTCCATTCGAGT 59.705 57.895 0.00 0.00 0.00 4.18
632 643 2.200370 ACTCGTCAGTGTGGGGGA 59.800 61.111 0.00 0.00 0.00 4.81
633 644 1.229209 ACTCGTCAGTGTGGGGGAT 60.229 57.895 0.00 0.00 0.00 3.85
770 800 2.037121 GGAGGAAGGAATAGAGCAGCTC 59.963 54.545 15.25 15.25 0.00 4.09
783 813 1.079127 CAGCTCACGAATTCCCCGT 60.079 57.895 0.00 0.00 41.36 5.28
784 814 1.084370 CAGCTCACGAATTCCCCGTC 61.084 60.000 0.00 0.00 38.29 4.79
785 815 1.814169 GCTCACGAATTCCCCGTCC 60.814 63.158 0.00 0.00 38.29 4.79
786 816 1.153429 CTCACGAATTCCCCGTCCC 60.153 63.158 0.00 0.00 38.29 4.46
952 996 3.431725 GCCGGGCTTCTGTTTCCG 61.432 66.667 12.87 0.00 41.90 4.30
1139 1192 2.487892 CGCCGGTAATTTGTGGCC 59.512 61.111 1.90 0.00 44.71 5.36
1190 1243 0.406361 TTCGGCTTGGGGGTGTATTT 59.594 50.000 0.00 0.00 0.00 1.40
1192 1245 1.897423 GGCTTGGGGGTGTATTTGC 59.103 57.895 0.00 0.00 0.00 3.68
1245 1298 4.449568 TGCGCAGGCGTGATAGCA 62.450 61.111 5.66 14.59 44.10 3.49
1361 1414 7.627939 GCATTTCTTCAGATGAACTATTGCAGT 60.628 37.037 12.75 0.00 40.05 4.40
1408 1461 3.631144 TGTTAGAACACTACACGAACGG 58.369 45.455 0.00 0.00 33.17 4.44
1425 1478 2.173519 ACGGATGAACCTACTTTCGGA 58.826 47.619 0.00 0.00 36.31 4.55
1429 1482 3.933332 GGATGAACCTACTTTCGGAACAG 59.067 47.826 0.00 0.00 35.41 3.16
1442 1495 4.265904 TCGGAACAGAGTTTTGATGCTA 57.734 40.909 0.00 0.00 0.00 3.49
1444 1497 4.021456 TCGGAACAGAGTTTTGATGCTAGA 60.021 41.667 0.00 0.00 0.00 2.43
1464 1517 5.505181 AGACTTGAATGTATCCACTGGTT 57.495 39.130 0.00 0.00 0.00 3.67
1476 1529 1.674221 CCACTGGTTAGAGCAGAGTGC 60.674 57.143 13.44 0.00 45.98 4.40
1514 1567 4.925054 TGTCGTGTAGTATTAGTTTGTGGC 59.075 41.667 0.00 0.00 0.00 5.01
1515 1568 5.166398 GTCGTGTAGTATTAGTTTGTGGCT 58.834 41.667 0.00 0.00 0.00 4.75
1519 1572 6.034683 CGTGTAGTATTAGTTTGTGGCTTCTC 59.965 42.308 0.00 0.00 0.00 2.87
1522 1575 7.602644 TGTAGTATTAGTTTGTGGCTTCTCTTG 59.397 37.037 0.00 0.00 0.00 3.02
1526 1580 3.620488 AGTTTGTGGCTTCTCTTGACAA 58.380 40.909 0.00 0.00 0.00 3.18
1531 1585 2.746362 GTGGCTTCTCTTGACAATCCAG 59.254 50.000 0.00 0.00 0.00 3.86
1536 1590 4.391523 GCTTCTCTTGACAATCCAGAAGTC 59.608 45.833 21.38 14.82 41.42 3.01
1652 1706 1.003233 CCTCGGCCTTCTTACAGGTTT 59.997 52.381 0.00 0.00 36.15 3.27
1653 1707 2.235402 CCTCGGCCTTCTTACAGGTTTA 59.765 50.000 0.00 0.00 36.15 2.01
1673 1727 2.717580 TGTCTTGCGTAATCGTCACT 57.282 45.000 0.00 0.00 39.49 3.41
1674 1728 3.021269 TGTCTTGCGTAATCGTCACTT 57.979 42.857 0.00 0.00 39.49 3.16
1675 1729 4.163458 TGTCTTGCGTAATCGTCACTTA 57.837 40.909 0.00 0.00 39.49 2.24
1676 1730 4.740268 TGTCTTGCGTAATCGTCACTTAT 58.260 39.130 0.00 0.00 39.49 1.73
1677 1731 5.165676 TGTCTTGCGTAATCGTCACTTATT 58.834 37.500 0.00 0.00 39.49 1.40
1678 1732 6.324042 TGTCTTGCGTAATCGTCACTTATTA 58.676 36.000 0.00 0.00 39.49 0.98
1679 1733 6.471198 TGTCTTGCGTAATCGTCACTTATTAG 59.529 38.462 0.00 0.00 39.49 1.73
1733 1787 2.562738 TCACGTGGTGATCTGAGATTGT 59.437 45.455 17.00 0.00 37.67 2.71
1770 1824 0.890683 GCATGTTGAGTGGAAAGGGG 59.109 55.000 0.00 0.00 0.00 4.79
1778 1832 2.301346 GAGTGGAAAGGGGTATGCATG 58.699 52.381 10.16 0.00 0.00 4.06
1819 1873 3.841643 CATGTGAAAAGCATGGAGAACC 58.158 45.455 0.00 0.00 39.82 3.62
1835 1889 0.467290 AACCCGCATGAACAACCAGT 60.467 50.000 0.00 0.00 0.00 4.00
1848 1902 2.229792 CAACCAGTTGTACATGTGGCT 58.770 47.619 19.35 8.52 35.92 4.75
1854 1908 4.441792 CAGTTGTACATGTGGCTGCTATA 58.558 43.478 9.11 0.00 0.00 1.31
1888 1942 7.393234 AGGTTGCTTTAGTGCTGAATATGTTTA 59.607 33.333 0.00 0.00 0.00 2.01
1913 1967 1.678101 GGTATTCAGTGATTGCCAGGC 59.322 52.381 14.94 3.66 0.00 4.85
1929 1983 2.563702 CAGGCAAAACAAATGCTTGGT 58.436 42.857 3.05 0.00 44.42 3.67
1966 2020 1.757340 CTGTCCTACCCCGACCTCC 60.757 68.421 0.00 0.00 0.00 4.30
2065 2119 1.073763 ACTGCCAATCTGGTTGTGCTA 59.926 47.619 12.93 2.76 40.46 3.49
2086 2140 5.473846 GCTATTGCCCCTTAATAAGTCTTCC 59.526 44.000 0.00 0.00 0.00 3.46
2135 2189 9.076596 CACTAGCAAATAAGTTTAAATTCCAGC 57.923 33.333 0.00 0.00 0.00 4.85
2139 2193 9.154847 AGCAAATAAGTTTAAATTCCAGCATTC 57.845 29.630 0.00 0.00 0.00 2.67
2179 2233 8.961092 CAATACTGAAGAACACAACAATTTCTG 58.039 33.333 0.00 0.00 29.89 3.02
2180 2234 5.343249 ACTGAAGAACACAACAATTTCTGC 58.657 37.500 0.00 0.00 29.89 4.26
2232 2286 8.514594 GTCTTTCTGACAAAATGGAATGACATA 58.485 33.333 12.03 0.00 44.73 2.29
2251 2305 1.123077 ATTCTAGACGCCATCTGCCA 58.877 50.000 0.00 0.00 38.49 4.92
2293 2522 6.659824 TGCTAAAAGGGTAATAGGGAAAGAG 58.340 40.000 0.00 0.00 0.00 2.85
2340 2569 1.379576 GCTGCCATCTGCCCTCTTT 60.380 57.895 0.00 0.00 40.16 2.52
2354 2583 6.213600 TCTGCCCTCTTTAGTAGAATCAGTTT 59.786 38.462 0.00 0.00 30.91 2.66
2393 2622 2.229784 GGTTTGGATGAGCAGAAGGTTG 59.770 50.000 0.00 0.00 0.00 3.77
2424 2653 6.931281 GTGCAGCTAATTACAGGAGAATATCA 59.069 38.462 0.00 0.00 0.00 2.15
2436 2665 8.729805 ACAGGAGAATATCATGAAAGAAGAAC 57.270 34.615 0.00 0.00 42.40 3.01
2452 2681 0.109597 GAACGGTGAAGGCTGCATTG 60.110 55.000 3.50 0.00 0.00 2.82
2454 2683 0.823356 ACGGTGAAGGCTGCATTGTT 60.823 50.000 3.50 0.00 0.00 2.83
2548 2777 5.736486 TCTACGTGTTTTTGTGCAATGTA 57.264 34.783 0.00 0.00 0.00 2.29
2606 2843 5.613116 TCCCATTCCACACCCAATATGTATA 59.387 40.000 0.00 0.00 0.00 1.47
2608 2845 6.240147 CCCATTCCACACCCAATATGTATAGA 60.240 42.308 0.00 0.00 0.00 1.98
2628 2865 3.189287 AGACTATTTTTCTTGGCAGCACG 59.811 43.478 0.00 0.00 0.00 5.34
2712 2990 5.518847 TGCACAGAACATAGAGCGTAATAAC 59.481 40.000 0.00 0.00 0.00 1.89
2775 3053 9.807649 ATGCTGAGCTTACAATTAAATTTTAGG 57.192 29.630 5.83 0.00 0.00 2.69
2791 3069 7.573968 AATTTTAGGACTTATGCTCATCCAC 57.426 36.000 0.00 0.00 33.33 4.02
2802 3080 0.729116 CTCATCCACGTGGTGAATGC 59.271 55.000 32.74 0.00 35.23 3.56
2890 3168 1.757118 TGATACTCCAGGAGAAAGCCG 59.243 52.381 24.45 0.00 33.32 5.52
2910 3188 0.462375 TCAGCAAATCCCATGCATGC 59.538 50.000 21.69 11.82 46.22 4.06
3033 3311 1.608055 TGTGTGCTGGACTTCCATTG 58.392 50.000 0.00 0.00 46.46 2.82
3037 3315 1.067295 TGCTGGACTTCCATTGGACT 58.933 50.000 4.45 0.00 46.46 3.85
3299 3577 5.660460 GGTGAGTATTTGCCCCTATTTTTG 58.340 41.667 0.00 0.00 0.00 2.44
3306 3584 4.799564 TTGCCCCTATTTTTGCTAACAG 57.200 40.909 0.00 0.00 0.00 3.16
3334 3612 7.815840 TCACTGTTATGTTTTTCTTCCATGA 57.184 32.000 0.00 0.00 0.00 3.07
3335 3613 7.874940 TCACTGTTATGTTTTTCTTCCATGAG 58.125 34.615 0.00 0.00 0.00 2.90
3336 3614 7.502226 TCACTGTTATGTTTTTCTTCCATGAGT 59.498 33.333 0.00 0.00 0.00 3.41
3337 3615 8.783093 CACTGTTATGTTTTTCTTCCATGAGTA 58.217 33.333 0.00 0.00 0.00 2.59
3338 3616 9.520515 ACTGTTATGTTTTTCTTCCATGAGTAT 57.479 29.630 0.00 0.00 0.00 2.12
3339 3617 9.778993 CTGTTATGTTTTTCTTCCATGAGTATG 57.221 33.333 0.00 0.00 0.00 2.39
3340 3618 9.513906 TGTTATGTTTTTCTTCCATGAGTATGA 57.486 29.630 0.00 0.00 36.36 2.15
3392 3670 2.028748 TGTTGTAGAGCTAACCGTTCCC 60.029 50.000 0.00 0.00 0.00 3.97
3473 3751 3.998341 CAGCGGTTAGTGCTTTAACCTTA 59.002 43.478 20.38 0.00 46.78 2.69
3490 3768 9.765795 TTTAACCTTACAATGGTATTGTTTTGG 57.234 29.630 11.88 12.88 36.69 3.28
3537 3815 6.577103 TCATGTCATATCAGTTCTCAAGTCC 58.423 40.000 0.00 0.00 0.00 3.85
3541 3819 6.892456 TGTCATATCAGTTCTCAAGTCCTACT 59.108 38.462 0.00 0.00 0.00 2.57
3703 3981 0.610174 TGCCTTGTCCTGAGCAGTAG 59.390 55.000 0.00 0.00 0.00 2.57
3715 3993 6.712998 GTCCTGAGCAGTAGTAGAGATGATAA 59.287 42.308 0.00 0.00 0.00 1.75
3791 4070 6.877611 AGTACGGATTGTTCAAAATGTCTT 57.122 33.333 0.00 0.00 0.00 3.01
3890 4169 8.454570 TTTAACTTTTCGGGTCTCTTGTATTT 57.545 30.769 0.00 0.00 0.00 1.40
4005 4286 0.179124 GGAGTAAGAGCTGGTGCGAG 60.179 60.000 0.00 0.00 45.42 5.03
4046 4327 3.126858 GGTTGCTGCATTGACGAGAATAA 59.873 43.478 1.84 0.00 0.00 1.40
4101 4382 5.357032 GGTAACTTTTGACGGAATGATGGAT 59.643 40.000 0.00 0.00 0.00 3.41
4112 4393 4.937620 CGGAATGATGGATACCTATTGTGG 59.062 45.833 0.00 0.00 0.00 4.17
4113 4394 5.256474 GGAATGATGGATACCTATTGTGGG 58.744 45.833 0.00 0.00 0.00 4.61
4123 4404 6.378848 GGATACCTATTGTGGGCAACTTTTAA 59.621 38.462 0.00 0.00 37.44 1.52
4132 4413 2.298729 GGGCAACTTTTAACCATGCTGA 59.701 45.455 0.00 0.00 37.20 4.26
4141 4422 6.265196 ACTTTTAACCATGCTGATGACTCAAA 59.735 34.615 0.00 0.00 0.00 2.69
4168 4449 6.698008 TCTATGTTTTGATATGGTTGCTGG 57.302 37.500 0.00 0.00 0.00 4.85
4313 4596 7.437862 GCAAATGTTTTTCCACAGAGAAATGTA 59.562 33.333 0.00 0.00 35.74 2.29
4321 4604 7.675161 TTCCACAGAGAAATGTATCTGGATA 57.325 36.000 12.13 0.00 45.64 2.59
4367 4650 3.234234 CCATATTGGATGGCCTGTCTT 57.766 47.619 3.32 0.00 40.96 3.01
4376 4659 3.307762 GGATGGCCTGTCTTGTAGTTCTT 60.308 47.826 3.32 0.00 0.00 2.52
4386 4669 6.920817 TGTCTTGTAGTTCTTCGTATGACAT 58.079 36.000 0.00 0.00 0.00 3.06
4428 4711 4.638304 ACACTACCGTTGAAGCATTAAGT 58.362 39.130 0.00 0.00 0.00 2.24
4437 4720 5.920273 CGTTGAAGCATTAAGTTTTGGTGAT 59.080 36.000 0.00 0.00 0.00 3.06
4473 4756 1.072173 TCTCTGGCAAAACTAGCTGCA 59.928 47.619 12.54 0.00 40.46 4.41
4531 4814 7.118971 GTCAATCCTCTGCAATTATGATCTACC 59.881 40.741 0.00 0.00 0.00 3.18
4546 4829 7.589958 ATGATCTACCCTACTCTTGTTACTG 57.410 40.000 0.00 0.00 0.00 2.74
4831 5114 3.454082 CAGGTTCCTTCTCAATCTAGGCT 59.546 47.826 0.00 0.00 0.00 4.58
4951 5234 4.336532 AACTATCAAACGACGCCATTTC 57.663 40.909 0.00 0.00 0.00 2.17
5086 5374 1.552578 ACGCAGTGTGGAGGTATACA 58.447 50.000 8.84 0.00 42.51 2.29
5089 5377 1.831736 GCAGTGTGGAGGTATACAGGT 59.168 52.381 5.01 0.00 0.00 4.00
5100 5388 2.512476 GGTATACAGGTTGTGGGGGAAT 59.488 50.000 5.01 0.00 0.00 3.01
5248 5539 4.217550 GCACTTTACTGGATTTGGTGCTAA 59.782 41.667 0.00 0.00 43.21 3.09
5253 5545 8.052748 ACTTTACTGGATTTGGTGCTAATATGA 58.947 33.333 0.00 0.00 0.00 2.15
5315 5607 2.679837 CTGGTTGACATATCTGGTGCAC 59.320 50.000 8.80 8.80 0.00 4.57
5318 5610 4.080638 TGGTTGACATATCTGGTGCACATA 60.081 41.667 20.43 8.51 0.00 2.29
5408 5700 6.541278 GGTGGGTATGTTTTATGTCTTACTCC 59.459 42.308 0.00 0.00 0.00 3.85
5412 5704 6.990939 GGTATGTTTTATGTCTTACTCCCTCC 59.009 42.308 0.00 0.00 0.00 4.30
5416 5708 2.830651 ATGTCTTACTCCCTCCGTCT 57.169 50.000 0.00 0.00 0.00 4.18
5451 5743 4.347813 TCGTTTTGCAAGCTAAAACAGTC 58.652 39.130 18.63 5.59 44.28 3.51
5466 5759 7.383300 GCTAAAACAGTCTGCAAAATGATCTTT 59.617 33.333 0.00 0.00 0.00 2.52
5486 5779 5.917087 TCTTTTATTATGGGATGGAGGGAGT 59.083 40.000 0.00 0.00 0.00 3.85
5487 5780 5.582950 TTTATTATGGGATGGAGGGAGTG 57.417 43.478 0.00 0.00 0.00 3.51
5536 5829 1.505353 GCACCATCTCAGCAAGTGC 59.495 57.895 0.00 0.00 45.99 4.40
5564 5858 4.277174 TCCTTTTGCGCTCTGAAAATACAA 59.723 37.500 9.73 0.00 0.00 2.41
5565 5859 5.048083 TCCTTTTGCGCTCTGAAAATACAAT 60.048 36.000 9.73 0.00 0.00 2.71
5566 5860 5.634859 CCTTTTGCGCTCTGAAAATACAATT 59.365 36.000 9.73 0.00 0.00 2.32
5567 5861 6.400303 CCTTTTGCGCTCTGAAAATACAATTG 60.400 38.462 9.73 3.24 0.00 2.32
5568 5862 4.095410 TGCGCTCTGAAAATACAATTGG 57.905 40.909 9.73 0.00 0.00 3.16
5569 5863 3.755905 TGCGCTCTGAAAATACAATTGGA 59.244 39.130 9.73 0.10 0.00 3.53
5570 5864 4.217334 TGCGCTCTGAAAATACAATTGGAA 59.783 37.500 9.73 0.00 0.00 3.53
5571 5865 5.105797 TGCGCTCTGAAAATACAATTGGAAT 60.106 36.000 9.73 0.00 0.00 3.01
5572 5866 6.094742 TGCGCTCTGAAAATACAATTGGAATA 59.905 34.615 9.73 0.00 0.00 1.75
5573 5867 7.141363 GCGCTCTGAAAATACAATTGGAATAT 58.859 34.615 10.83 0.00 0.00 1.28
5574 5868 8.289618 GCGCTCTGAAAATACAATTGGAATATA 58.710 33.333 10.83 0.00 0.00 0.86
5611 5917 4.802248 GCGGAGATTTAGATCATCTTGCCT 60.802 45.833 0.00 0.00 34.60 4.75
5688 5994 4.623167 GGTACATCTTCATATACGCTGCTG 59.377 45.833 0.00 0.00 0.00 4.41
5758 6064 3.981071 TCTGTTCTGGTGGTGGAATAG 57.019 47.619 0.00 0.00 33.82 1.73
5803 6109 9.985318 CTTTATCTGAATTTTGCTGTTCTAGAG 57.015 33.333 0.00 0.00 0.00 2.43
5865 6171 9.717942 GTAGCACCATCTCTATGATCTAAAATT 57.282 33.333 0.00 0.00 34.84 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.324991 AACTGACCGAACGGCCCC 62.325 66.667 13.32 3.85 39.32 5.80
151 152 1.002366 CATGTGGTAGCTGAGCGTTC 58.998 55.000 0.00 0.00 0.00 3.95
215 216 1.007038 TGCCACGTCACCGTCTTAC 60.007 57.895 0.00 0.00 46.28 2.34
239 240 4.021925 GTCTCCCGTGCAAGCCCT 62.022 66.667 0.00 0.00 0.00 5.19
279 280 3.123620 CCTGTGCTGCTTCGGCTC 61.124 66.667 0.00 0.00 42.37 4.70
326 331 9.698617 GTGAAACTCGTTCGCTTATTAATATTT 57.301 29.630 0.00 0.00 42.47 1.40
366 377 1.191647 CCGTGTAGCACTTGTTCGTTC 59.808 52.381 0.00 0.00 31.34 3.95
393 404 2.687370 GCATTTTTGGGAGCAATCGTT 58.313 42.857 0.00 0.00 0.00 3.85
447 458 0.166814 GACTCAAATGGCTGCGTGTC 59.833 55.000 0.00 0.00 0.00 3.67
513 524 0.452184 GTCGCTCTGGATTCTCGACA 59.548 55.000 8.01 0.00 45.94 4.35
530 541 0.653636 TTTCCTTGCACGAACACGTC 59.346 50.000 0.00 0.00 38.21 4.34
539 550 1.068588 GGGTTGGTTCTTTCCTTGCAC 59.931 52.381 0.00 0.00 0.00 4.57
570 581 3.318275 CCCGCATGTCATGTACTACTACT 59.682 47.826 14.26 0.00 0.00 2.57
571 582 3.639538 CCCGCATGTCATGTACTACTAC 58.360 50.000 14.26 0.00 0.00 2.73
572 583 2.035449 GCCCGCATGTCATGTACTACTA 59.965 50.000 14.26 0.00 0.00 1.82
669 690 2.671070 CGGAGGTGAACATGCCCT 59.329 61.111 0.00 0.00 0.00 5.19
700 721 0.040499 ATATCCTCCTCCCTCCTCGC 59.960 60.000 0.00 0.00 0.00 5.03
701 722 1.356059 TGATATCCTCCTCCCTCCTCG 59.644 57.143 0.00 0.00 0.00 4.63
702 723 3.774842 ATGATATCCTCCTCCCTCCTC 57.225 52.381 0.00 0.00 0.00 3.71
770 800 1.153429 GAGGGACGGGGAATTCGTG 60.153 63.158 0.00 0.00 41.22 4.35
939 983 2.041115 GCCTCCGGAAACAGAAGCC 61.041 63.158 5.23 0.00 0.00 4.35
1139 1192 1.066573 ACCGAAATGGAGAGAGCTGTG 60.067 52.381 0.00 0.00 42.00 3.66
1190 1243 2.230992 GCAATTACTTCCCACACATGCA 59.769 45.455 0.00 0.00 0.00 3.96
1192 1245 3.119388 CCAGCAATTACTTCCCACACATG 60.119 47.826 0.00 0.00 0.00 3.21
1236 1289 1.202973 CGAAGGTCGCTGCTATCACG 61.203 60.000 0.00 0.00 31.14 4.35
1245 1298 4.681978 GGGCACACGAAGGTCGCT 62.682 66.667 0.00 0.00 45.12 4.93
1402 1455 2.597305 CGAAAGTAGGTTCATCCGTTCG 59.403 50.000 0.00 0.00 41.99 3.95
1403 1456 2.928116 CCGAAAGTAGGTTCATCCGTTC 59.072 50.000 0.00 0.00 41.99 3.95
1404 1457 2.564062 TCCGAAAGTAGGTTCATCCGTT 59.436 45.455 0.00 0.00 41.99 4.44
1405 1458 2.173519 TCCGAAAGTAGGTTCATCCGT 58.826 47.619 0.00 0.00 41.99 4.69
1406 1459 2.928116 GTTCCGAAAGTAGGTTCATCCG 59.072 50.000 0.00 0.00 41.99 4.18
1407 1460 3.933332 CTGTTCCGAAAGTAGGTTCATCC 59.067 47.826 0.00 0.00 0.00 3.51
1408 1461 4.817517 TCTGTTCCGAAAGTAGGTTCATC 58.182 43.478 0.00 0.00 0.00 2.92
1425 1478 6.291377 TCAAGTCTAGCATCAAAACTCTGTT 58.709 36.000 0.00 0.00 0.00 3.16
1429 1482 7.138692 ACATTCAAGTCTAGCATCAAAACTC 57.861 36.000 0.00 0.00 0.00 3.01
1476 1529 3.391665 GACATCCCCTCCACGCAGG 62.392 68.421 0.00 0.00 39.47 4.85
1481 1534 0.460311 CTACACGACATCCCCTCCAC 59.540 60.000 0.00 0.00 0.00 4.02
1514 1567 5.545588 TGACTTCTGGATTGTCAAGAGAAG 58.454 41.667 20.22 20.22 43.48 2.85
1515 1568 5.512060 CCTGACTTCTGGATTGTCAAGAGAA 60.512 44.000 0.00 0.00 39.74 2.87
1519 1572 3.008375 TCCCTGACTTCTGGATTGTCAAG 59.992 47.826 3.80 0.00 39.74 3.02
1522 1575 2.569404 ACTCCCTGACTTCTGGATTGTC 59.431 50.000 3.80 0.00 37.15 3.18
1526 1580 2.836981 CTCAACTCCCTGACTTCTGGAT 59.163 50.000 3.80 0.00 37.15 3.41
1531 1585 3.426615 TCTCTCTCAACTCCCTGACTTC 58.573 50.000 0.00 0.00 0.00 3.01
1536 1590 3.373830 AGGATTCTCTCTCAACTCCCTG 58.626 50.000 0.00 0.00 0.00 4.45
1652 1706 4.365899 AGTGACGATTACGCAAGACATA 57.634 40.909 0.00 0.00 43.96 2.29
1653 1707 3.232213 AGTGACGATTACGCAAGACAT 57.768 42.857 0.00 0.00 43.96 3.06
1733 1787 5.255687 ACATGCAAGATTTCATAGGTCACA 58.744 37.500 0.00 0.00 0.00 3.58
1819 1873 3.477504 CAACTGGTTGTTCATGCGG 57.522 52.632 5.41 0.00 36.63 5.69
1835 1889 3.814842 GCATATAGCAGCCACATGTACAA 59.185 43.478 0.00 0.00 44.79 2.41
1854 1908 3.629398 GCACTAAAGCAACCTATCAGCAT 59.371 43.478 0.00 0.00 0.00 3.79
1888 1942 4.343231 TGGCAATCACTGAATACCAACAT 58.657 39.130 0.00 0.00 0.00 2.71
1913 1967 7.816031 AGATTGATCTACCAAGCATTTGTTTTG 59.184 33.333 0.00 0.00 35.12 2.44
1929 1983 5.478679 GGACAGCTAAGCCTAGATTGATCTA 59.521 44.000 0.00 1.12 38.32 1.98
1966 2020 3.063997 CGAAATCGTGGGAGATTGGAAAG 59.936 47.826 0.00 0.00 40.39 2.62
2065 2119 4.231890 TGGGAAGACTTATTAAGGGGCAAT 59.768 41.667 8.26 0.00 0.00 3.56
2086 2140 7.017056 AGTGAGATCTTCCTTAATCCCTAATGG 59.983 40.741 0.00 0.00 0.00 3.16
2135 2189 9.695526 TCAGTATTGTTCAAAATCAAAGGAATG 57.304 29.630 0.00 0.00 0.00 2.67
2139 2193 9.748708 TTCTTCAGTATTGTTCAAAATCAAAGG 57.251 29.630 0.00 0.00 0.00 3.11
2226 2280 4.559502 GCAGATGGCGTCTAGAATATGTCA 60.560 45.833 9.29 0.00 34.69 3.58
2232 2286 1.123077 TGGCAGATGGCGTCTAGAAT 58.877 50.000 9.29 0.00 46.16 2.40
2285 2514 9.736023 CAATTGCTATTATTTACACTCTTTCCC 57.264 33.333 0.00 0.00 0.00 3.97
2293 2522 9.937175 GGTCTCTTCAATTGCTATTATTTACAC 57.063 33.333 0.00 0.00 0.00 2.90
2354 2583 5.514834 CCAAACCCTCAGAGGAGACATTTTA 60.515 44.000 19.21 0.00 44.26 1.52
2393 2622 2.006888 TGTAATTAGCTGCACCTTCGC 58.993 47.619 1.02 0.00 0.00 4.70
2395 2624 3.873910 TCCTGTAATTAGCTGCACCTTC 58.126 45.455 1.02 0.00 0.00 3.46
2399 2628 6.931281 TGATATTCTCCTGTAATTAGCTGCAC 59.069 38.462 1.02 0.00 0.00 4.57
2424 2653 2.814336 GCCTTCACCGTTCTTCTTTCAT 59.186 45.455 0.00 0.00 0.00 2.57
2436 2665 0.387622 CAACAATGCAGCCTTCACCG 60.388 55.000 0.00 0.00 0.00 4.94
2452 2681 1.399727 CGCGTCCAGATGTTTTCCAAC 60.400 52.381 0.00 0.00 0.00 3.77
2454 2683 0.250124 ACGCGTCCAGATGTTTTCCA 60.250 50.000 5.58 0.00 0.00 3.53
2548 2777 2.644798 ACTAGGTGCAAAGGAACTCCAT 59.355 45.455 0.00 0.00 38.49 3.41
2606 2843 3.189287 CGTGCTGCCAAGAAAAATAGTCT 59.811 43.478 0.00 0.00 0.00 3.24
2608 2845 2.884639 ACGTGCTGCCAAGAAAAATAGT 59.115 40.909 0.00 0.00 0.00 2.12
2712 2990 4.337555 CCTGGAACATCAGGCTTAGAAATG 59.662 45.833 0.00 0.00 46.47 2.32
2749 3027 9.807649 CCTAAAATTTAATTGTAAGCTCAGCAT 57.192 29.630 0.00 0.00 0.00 3.79
2767 3045 6.260936 CGTGGATGAGCATAAGTCCTAAAATT 59.739 38.462 0.00 0.00 0.00 1.82
2775 3053 2.205074 CCACGTGGATGAGCATAAGTC 58.795 52.381 31.31 0.00 37.39 3.01
2788 3066 3.567576 TTATTTGCATTCACCACGTGG 57.432 42.857 32.83 32.83 42.17 4.94
2791 3069 9.475505 CATTTTATTTTATTTGCATTCACCACG 57.524 29.630 0.00 0.00 0.00 4.94
2831 3109 1.683943 AAAGCATCACCGCAGCATAT 58.316 45.000 0.00 0.00 0.00 1.78
2834 3112 1.286570 CAAAAGCATCACCGCAGCA 59.713 52.632 0.00 0.00 0.00 4.41
2890 3168 1.805120 GCATGCATGGGATTTGCTGAC 60.805 52.381 27.34 2.90 40.77 3.51
2910 3188 1.511850 TGCACACATCACTTTCTCCG 58.488 50.000 0.00 0.00 0.00 4.63
2944 3222 9.443283 CAAAGTCAATAGTAATGAGCATTAAGC 57.557 33.333 4.61 0.00 46.19 3.09
3024 3302 3.660865 GACGTAACAGTCCAATGGAAGT 58.339 45.455 2.31 2.82 35.22 3.01
3067 3345 9.284968 TCTAAGCCATCCTAAAATATAAGCAAC 57.715 33.333 0.00 0.00 0.00 4.17
3276 3554 5.660460 CAAAAATAGGGGCAAATACTCACC 58.340 41.667 0.00 0.00 0.00 4.02
3306 3584 6.922957 TGGAAGAAAAACATAACAGTGATTGC 59.077 34.615 0.00 0.00 0.00 3.56
3347 3625 9.733556 ACAGAATTTACCATATGTGTGAAAGTA 57.266 29.630 1.24 0.00 0.00 2.24
3348 3626 8.635765 ACAGAATTTACCATATGTGTGAAAGT 57.364 30.769 1.24 0.00 0.00 2.66
3349 3627 9.345517 CAACAGAATTTACCATATGTGTGAAAG 57.654 33.333 1.24 0.00 0.00 2.62
3350 3628 8.855110 ACAACAGAATTTACCATATGTGTGAAA 58.145 29.630 1.24 0.00 0.00 2.69
3351 3629 8.402798 ACAACAGAATTTACCATATGTGTGAA 57.597 30.769 1.24 3.39 0.00 3.18
3352 3630 7.994425 ACAACAGAATTTACCATATGTGTGA 57.006 32.000 1.24 0.00 0.00 3.58
3353 3631 9.161629 TCTACAACAGAATTTACCATATGTGTG 57.838 33.333 1.24 0.00 0.00 3.82
3354 3632 9.383519 CTCTACAACAGAATTTACCATATGTGT 57.616 33.333 1.24 2.24 31.12 3.72
3355 3633 8.338259 GCTCTACAACAGAATTTACCATATGTG 58.662 37.037 1.24 0.00 31.12 3.21
3356 3634 8.267894 AGCTCTACAACAGAATTTACCATATGT 58.732 33.333 1.24 0.00 31.12 2.29
3357 3635 8.668510 AGCTCTACAACAGAATTTACCATATG 57.331 34.615 0.00 0.00 31.12 1.78
3359 3637 9.595823 GTTAGCTCTACAACAGAATTTACCATA 57.404 33.333 0.00 0.00 31.12 2.74
3360 3638 7.553044 GGTTAGCTCTACAACAGAATTTACCAT 59.447 37.037 0.00 0.00 31.12 3.55
3361 3639 6.877322 GGTTAGCTCTACAACAGAATTTACCA 59.123 38.462 0.00 0.00 31.12 3.25
3362 3640 6.035758 CGGTTAGCTCTACAACAGAATTTACC 59.964 42.308 0.00 0.00 31.12 2.85
3363 3641 6.589139 ACGGTTAGCTCTACAACAGAATTTAC 59.411 38.462 4.54 0.00 31.12 2.01
3364 3642 6.694447 ACGGTTAGCTCTACAACAGAATTTA 58.306 36.000 4.54 0.00 31.12 1.40
3365 3643 5.548406 ACGGTTAGCTCTACAACAGAATTT 58.452 37.500 4.54 0.00 31.12 1.82
3366 3644 5.148651 ACGGTTAGCTCTACAACAGAATT 57.851 39.130 4.54 0.00 31.12 2.17
3367 3645 4.803098 ACGGTTAGCTCTACAACAGAAT 57.197 40.909 4.54 0.00 31.12 2.40
3368 3646 4.553323 GAACGGTTAGCTCTACAACAGAA 58.447 43.478 4.54 0.00 31.12 3.02
3369 3647 3.057033 GGAACGGTTAGCTCTACAACAGA 60.057 47.826 4.54 0.00 0.00 3.41
3392 3670 2.365617 AGTAGACCTGCCCATTCATACG 59.634 50.000 0.00 0.00 0.00 3.06
3473 3751 6.183361 ACAACATCCCAAAACAATACCATTGT 60.183 34.615 0.00 0.00 0.00 2.71
3490 3768 5.367945 TCCTATGGAAGGTTACAACATCC 57.632 43.478 8.47 8.47 46.62 3.51
3744 4022 9.739276 ACTTATTGGTGAATGAAGTATTTCAGA 57.261 29.630 6.81 0.00 45.89 3.27
3761 4039 7.513371 TTTTGAACAATCCGTACTTATTGGT 57.487 32.000 16.71 12.43 37.40 3.67
3772 4050 3.674753 GCCAAGACATTTTGAACAATCCG 59.325 43.478 0.00 0.00 0.00 4.18
3823 4102 3.258123 GCTAAAGATGGTTCCCTTGCAAA 59.742 43.478 0.00 0.00 0.00 3.68
3864 4143 8.631480 AATACAAGAGACCCGAAAAGTTAAAT 57.369 30.769 0.00 0.00 0.00 1.40
3865 4144 8.454570 AAATACAAGAGACCCGAAAAGTTAAA 57.545 30.769 0.00 0.00 0.00 1.52
3867 4146 8.370182 ACTAAATACAAGAGACCCGAAAAGTTA 58.630 33.333 0.00 0.00 0.00 2.24
3890 4169 6.785466 TGGAATAATGCTAGGTATGACCACTA 59.215 38.462 0.00 0.00 41.95 2.74
3924 4205 5.318889 AGGAATCCTGGTATCTACTGGGATA 59.681 44.000 0.00 0.00 36.93 2.59
4005 4286 1.308998 CGTGCCTTTGTATGGGATCC 58.691 55.000 1.92 1.92 0.00 3.36
4046 4327 0.107508 CGGATGCCTTCCTCATGTGT 60.108 55.000 0.00 0.00 42.99 3.72
4101 4382 5.477637 GGTTAAAAGTTGCCCACAATAGGTA 59.522 40.000 0.00 0.00 38.27 3.08
4112 4393 3.658757 TCAGCATGGTTAAAAGTTGCC 57.341 42.857 0.00 0.00 36.16 4.52
4113 4394 4.622740 GTCATCAGCATGGTTAAAAGTTGC 59.377 41.667 0.00 0.00 36.16 4.17
4123 4404 5.479375 AGAAATTTTGAGTCATCAGCATGGT 59.521 36.000 0.00 0.00 36.61 3.55
4141 4422 9.590451 CAGCAACCATATCAAAACATAGAAATT 57.410 29.630 0.00 0.00 0.00 1.82
4313 4596 5.509832 TTAGCAGCCATGATTATCCAGAT 57.490 39.130 0.00 0.00 0.00 2.90
4321 4604 6.040166 CCTCTACAAATTTAGCAGCCATGATT 59.960 38.462 0.00 0.00 0.00 2.57
4364 4647 7.153217 TGATGTCATACGAAGAACTACAAGA 57.847 36.000 0.00 0.00 0.00 3.02
4365 4648 7.918033 AGATGATGTCATACGAAGAACTACAAG 59.082 37.037 0.00 0.00 36.57 3.16
4367 4650 7.334844 AGATGATGTCATACGAAGAACTACA 57.665 36.000 0.00 0.00 36.57 2.74
4376 4659 6.648725 TGTGAAAACAAGATGATGTCATACGA 59.351 34.615 0.00 0.00 36.57 3.43
4386 4669 8.988934 GTAGTGTTATCTGTGAAAACAAGATGA 58.011 33.333 0.00 0.00 35.08 2.92
4428 4711 1.268999 GCAACAGCGACATCACCAAAA 60.269 47.619 0.00 0.00 0.00 2.44
4437 4720 1.001293 AGAGATGAAGCAACAGCGACA 59.999 47.619 0.00 0.00 0.00 4.35
4531 4814 8.842358 TTCATTTAACCAGTAACAAGAGTAGG 57.158 34.615 0.00 0.00 0.00 3.18
4831 5114 3.390967 TGATGTTGTTCAGGTTCAGGAGA 59.609 43.478 0.00 0.00 0.00 3.71
5086 5374 2.053747 TCACTATTCCCCCACAACCT 57.946 50.000 0.00 0.00 0.00 3.50
5089 5377 4.480537 ACCAATATCACTATTCCCCCACAA 59.519 41.667 0.00 0.00 0.00 3.33
5100 5388 4.020928 ACAACACACCGACCAATATCACTA 60.021 41.667 0.00 0.00 0.00 2.74
5202 5493 7.443575 GTGCTCCAAGATAATGTACAAGATCAT 59.556 37.037 17.85 7.42 0.00 2.45
5248 5539 7.439356 TCGAGCTCGAAATTTCAAGAATCATAT 59.561 33.333 35.16 0.00 46.30 1.78
5276 5568 5.125367 ACCAGTTTAAACCTTCTGTCCTT 57.875 39.130 14.72 0.00 0.00 3.36
5315 5607 9.408648 AGGGAAATTTTACACTAACTCCATATG 57.591 33.333 0.00 0.00 0.00 1.78
5318 5610 8.721133 AAAGGGAAATTTTACACTAACTCCAT 57.279 30.769 0.00 0.00 0.00 3.41
5408 5700 7.323049 ACGATCTTATATTATGAGACGGAGG 57.677 40.000 16.71 4.72 0.00 4.30
5412 5704 8.699749 TGCAAAACGATCTTATATTATGAGACG 58.300 33.333 13.57 13.57 0.00 4.18
5416 5708 9.056005 AGCTTGCAAAACGATCTTATATTATGA 57.944 29.630 0.00 0.00 0.00 2.15
5451 5743 9.991906 ATCCCATAATAAAAGATCATTTTGCAG 57.008 29.630 0.62 0.00 0.00 4.41
5466 5759 3.330701 GCACTCCCTCCATCCCATAATAA 59.669 47.826 0.00 0.00 0.00 1.40
5474 5767 1.771255 AGTATTGCACTCCCTCCATCC 59.229 52.381 0.00 0.00 28.33 3.51
5501 5794 7.984475 AGATGGTGCCCAAACAATATACTATA 58.016 34.615 0.00 0.00 36.95 1.31
5537 5830 0.671781 TCAGAGCGCAAAAGGAGAGC 60.672 55.000 11.47 0.00 0.00 4.09
5538 5831 1.800805 TTCAGAGCGCAAAAGGAGAG 58.199 50.000 11.47 0.00 0.00 3.20
5539 5832 2.254546 TTTCAGAGCGCAAAAGGAGA 57.745 45.000 11.47 0.00 0.00 3.71
5540 5833 3.565905 ATTTTCAGAGCGCAAAAGGAG 57.434 42.857 11.47 0.00 0.00 3.69
5541 5834 3.818210 TGTATTTTCAGAGCGCAAAAGGA 59.182 39.130 11.47 0.00 0.00 3.36
5565 5859 9.689976 CCGCAAAAATGTCAATATATATTCCAA 57.310 29.630 4.93 0.00 0.00 3.53
5566 5860 9.072375 TCCGCAAAAATGTCAATATATATTCCA 57.928 29.630 4.93 6.01 0.00 3.53
5567 5861 9.559958 CTCCGCAAAAATGTCAATATATATTCC 57.440 33.333 4.93 0.64 0.00 3.01
5574 5868 8.902806 TCTAAATCTCCGCAAAAATGTCAATAT 58.097 29.630 0.00 0.00 0.00 1.28
5575 5869 8.275015 TCTAAATCTCCGCAAAAATGTCAATA 57.725 30.769 0.00 0.00 0.00 1.90
5611 5917 9.545105 AGATTTTCAAAACAATTAACAGATGCA 57.455 25.926 0.00 0.00 0.00 3.96
5681 5987 1.466360 GCACTTAAATGGTCAGCAGCG 60.466 52.381 0.00 0.00 0.00 5.18
5688 5994 4.156008 CAGGTAAGGTGCACTTAAATGGTC 59.844 45.833 17.98 0.00 42.99 4.02
5758 6064 4.574599 AAGATGCACCAAACACTTTCTC 57.425 40.909 0.00 0.00 0.00 2.87
5817 6123 9.923143 GCTACCAAATTCTTATAGGTTGTTTTT 57.077 29.630 0.00 0.00 33.91 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.