Multiple sequence alignment - TraesCS1A01G226000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G226000 chr1A 100.000 3633 0 0 1 3633 396295939 396299571 0.000000e+00 6709.0
1 TraesCS1A01G226000 chr1A 93.151 146 10 0 109 254 17321154 17321009 7.900000e-52 215.0
2 TraesCS1A01G226000 chr1A 92.982 114 7 1 1 113 49966928 49967041 8.070000e-37 165.0
3 TraesCS1A01G226000 chr1A 93.636 110 7 0 1 110 521246577 521246468 8.070000e-37 165.0
4 TraesCS1A01G226000 chr1A 93.519 108 7 0 3 110 405822434 405822327 1.040000e-35 161.0
5 TraesCS1A01G226000 chr1A 92.727 110 8 0 1 110 465431647 465431756 3.750000e-35 159.0
6 TraesCS1A01G226000 chr1A 94.643 56 3 0 1846 1901 396297733 396297788 1.800000e-13 87.9
7 TraesCS1A01G226000 chr1A 94.643 56 3 0 1795 1850 396297784 396297839 1.800000e-13 87.9
8 TraesCS1A01G226000 chr1D 84.949 2053 165 74 781 2752 315967095 315969084 0.000000e+00 1947.0
9 TraesCS1A01G226000 chr1D 90.000 290 17 2 258 547 315965787 315966064 7.410000e-97 364.0
10 TraesCS1A01G226000 chr1D 87.137 241 24 4 559 796 315966905 315967141 2.150000e-67 267.0
11 TraesCS1A01G226000 chr1D 87.892 223 12 7 575 796 315966348 315966556 7.790000e-62 248.0
12 TraesCS1A01G226000 chr1D 92.373 118 8 1 2750 2867 340555509 340555625 2.240000e-37 167.0
13 TraesCS1A01G226000 chr6D 94.263 767 44 0 2867 3633 22240884 22241650 0.000000e+00 1173.0
14 TraesCS1A01G226000 chr6D 93.351 767 51 0 2867 3633 162123765 162122999 0.000000e+00 1134.0
15 TraesCS1A01G226000 chr6D 93.103 116 7 1 2752 2867 162124036 162123922 6.240000e-38 169.0
16 TraesCS1A01G226000 chr1B 82.663 1442 133 62 781 2159 427970975 427972362 0.000000e+00 1170.0
17 TraesCS1A01G226000 chr1B 92.490 253 13 3 545 796 427970774 427971021 1.240000e-94 357.0
18 TraesCS1A01G226000 chr1B 90.217 276 19 5 253 527 427970397 427970665 1.600000e-93 353.0
19 TraesCS1A01G226000 chr1B 89.167 240 15 4 2228 2463 427973086 427973318 4.590000e-74 289.0
20 TraesCS1A01G226000 chr4D 93.742 767 48 0 2867 3633 84782057 84781291 0.000000e+00 1151.0
21 TraesCS1A01G226000 chr7D 93.473 766 49 1 2867 3631 72161180 72160415 0.000000e+00 1136.0
22 TraesCS1A01G226000 chr7D 93.256 771 48 1 2867 3633 65868265 65869035 0.000000e+00 1133.0
23 TraesCS1A01G226000 chr7D 93.351 767 47 2 2867 3633 131312669 131313431 0.000000e+00 1131.0
24 TraesCS1A01G226000 chr2D 93.351 767 51 0 2867 3633 528991770 528992536 0.000000e+00 1134.0
25 TraesCS1A01G226000 chr2D 88.542 96 11 0 108 203 9778463 9778558 2.290000e-22 117.0
26 TraesCS1A01G226000 chr5D 92.960 767 54 0 2867 3633 379231198 379230432 0.000000e+00 1118.0
27 TraesCS1A01G226000 chr5D 91.667 120 9 1 2748 2867 440636486 440636604 8.070000e-37 165.0
28 TraesCS1A01G226000 chr6A 92.829 767 55 0 2867 3633 595068655 595067889 0.000000e+00 1112.0
29 TraesCS1A01G226000 chr3D 93.548 124 7 1 2744 2867 294349581 294349459 2.230000e-42 183.0
30 TraesCS1A01G226000 chr3B 88.889 144 14 1 108 251 474370553 474370412 3.730000e-40 176.0
31 TraesCS1A01G226000 chr7A 92.500 120 8 1 2748 2867 554464585 554464467 1.730000e-38 171.0
32 TraesCS1A01G226000 chr7A 91.525 118 9 1 2750 2867 519167288 519167172 1.040000e-35 161.0
33 TraesCS1A01G226000 chr5A 93.694 111 7 0 1 111 120028561 120028671 2.240000e-37 167.0
34 TraesCS1A01G226000 chr3A 94.444 108 6 0 1 108 57968496 57968389 2.240000e-37 167.0
35 TraesCS1A01G226000 chr3A 91.667 120 9 1 2748 2867 18772780 18772662 8.070000e-37 165.0
36 TraesCS1A01G226000 chr3A 90.000 130 10 3 2739 2867 453817260 453817387 8.070000e-37 165.0
37 TraesCS1A01G226000 chr2B 92.373 118 8 1 2750 2867 669332318 669332434 2.240000e-37 167.0
38 TraesCS1A01G226000 chr2A 94.444 108 6 0 1 108 66521271 66521378 2.240000e-37 167.0
39 TraesCS1A01G226000 chr2A 92.727 110 6 1 1 110 33334411 33334518 1.350000e-34 158.0
40 TraesCS1A01G226000 chr4A 93.519 108 7 0 1 108 625966930 625966823 1.040000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G226000 chr1A 396295939 396299571 3632 False 2294.933333 6709 96.428667 1 3633 3 chr1A.!!$F3 3632
1 TraesCS1A01G226000 chr1D 315965787 315969084 3297 False 706.500000 1947 87.494500 258 2752 4 chr1D.!!$F2 2494
2 TraesCS1A01G226000 chr6D 22240884 22241650 766 False 1173.000000 1173 94.263000 2867 3633 1 chr6D.!!$F1 766
3 TraesCS1A01G226000 chr6D 162122999 162124036 1037 True 651.500000 1134 93.227000 2752 3633 2 chr6D.!!$R1 881
4 TraesCS1A01G226000 chr1B 427970397 427973318 2921 False 542.250000 1170 88.634250 253 2463 4 chr1B.!!$F1 2210
5 TraesCS1A01G226000 chr4D 84781291 84782057 766 True 1151.000000 1151 93.742000 2867 3633 1 chr4D.!!$R1 766
6 TraesCS1A01G226000 chr7D 72160415 72161180 765 True 1136.000000 1136 93.473000 2867 3631 1 chr7D.!!$R1 764
7 TraesCS1A01G226000 chr7D 65868265 65869035 770 False 1133.000000 1133 93.256000 2867 3633 1 chr7D.!!$F1 766
8 TraesCS1A01G226000 chr7D 131312669 131313431 762 False 1131.000000 1131 93.351000 2867 3633 1 chr7D.!!$F2 766
9 TraesCS1A01G226000 chr2D 528991770 528992536 766 False 1134.000000 1134 93.351000 2867 3633 1 chr2D.!!$F2 766
10 TraesCS1A01G226000 chr5D 379230432 379231198 766 True 1118.000000 1118 92.960000 2867 3633 1 chr5D.!!$R1 766
11 TraesCS1A01G226000 chr6A 595067889 595068655 766 True 1112.000000 1112 92.829000 2867 3633 1 chr6A.!!$R1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.034616 GCGCCTATTGGAGATGCTCT 59.965 55.0 0.00 0.0 34.95 4.09 F
180 181 0.037512 CTCTGACACAGCAGACCCTG 60.038 60.0 0.00 0.0 39.84 4.45 F
442 444 0.103572 CCATTGCCATTGCTGCCTAC 59.896 55.0 0.00 0.0 38.71 3.18 F
1224 2102 0.324183 TGAGCTCTACTCTGGCTGCT 60.324 55.0 16.19 0.0 46.41 4.24 F
2423 4082 0.176910 GGCTGGTGCTCTTCTAGGTC 59.823 60.0 0.00 0.0 39.59 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 2048 0.312102 GCAACAGGAGAAGGCAACAC 59.688 55.000 0.00 0.0 41.41 3.32 R
2162 3818 0.180406 CTCCGGGGATTAGGTGTTGG 59.820 60.000 0.00 0.0 0.00 3.77 R
2163 3819 0.463833 GCTCCGGGGATTAGGTGTTG 60.464 60.000 4.80 0.0 0.00 3.33 R
2584 4244 0.100503 AGGCTGAAAACAACACGTGC 59.899 50.000 17.22 0.0 0.00 5.34 R
3443 5268 1.218047 CGGGCAAGGATTCGTCTGA 59.782 57.895 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.072088 CGCCGCGTCAAACCAGAC 62.072 66.667 4.92 0.00 35.19 3.51
45 46 2.970324 GCCGCGTCAAACCAGACA 60.970 61.111 4.92 0.00 38.43 3.41
46 47 2.539338 GCCGCGTCAAACCAGACAA 61.539 57.895 4.92 0.00 38.43 3.18
47 48 1.852067 GCCGCGTCAAACCAGACAAT 61.852 55.000 4.92 0.00 38.43 2.71
48 49 0.110238 CCGCGTCAAACCAGACAATG 60.110 55.000 4.92 0.00 38.43 2.82
49 50 0.725784 CGCGTCAAACCAGACAATGC 60.726 55.000 0.00 0.00 38.43 3.56
50 51 0.725784 GCGTCAAACCAGACAATGCG 60.726 55.000 0.00 0.00 38.43 4.73
51 52 0.725784 CGTCAAACCAGACAATGCGC 60.726 55.000 0.00 0.00 38.43 6.09
52 53 0.725784 GTCAAACCAGACAATGCGCG 60.726 55.000 0.00 0.00 38.40 6.86
53 54 2.082366 CAAACCAGACAATGCGCGC 61.082 57.895 27.26 27.26 0.00 6.86
54 55 3.593551 AAACCAGACAATGCGCGCG 62.594 57.895 28.44 28.44 0.00 6.86
67 68 4.236416 GCGCGCGGCATATGTGTT 62.236 61.111 33.06 0.00 42.87 3.32
68 69 2.403186 CGCGCGGCATATGTGTTT 59.597 55.556 24.84 0.00 0.00 2.83
69 70 1.226267 CGCGCGGCATATGTGTTTT 60.226 52.632 24.84 0.00 0.00 2.43
70 71 0.796491 CGCGCGGCATATGTGTTTTT 60.796 50.000 24.84 0.00 0.00 1.94
98 99 3.887868 GCAACCGGCGCCTATTGG 61.888 66.667 29.77 23.86 0.00 3.16
99 100 2.124901 CAACCGGCGCCTATTGGA 60.125 61.111 26.68 0.00 34.57 3.53
100 101 2.180204 CAACCGGCGCCTATTGGAG 61.180 63.158 26.68 12.21 36.16 3.86
101 102 2.363975 AACCGGCGCCTATTGGAGA 61.364 57.895 26.68 0.00 34.95 3.71
102 103 1.696097 AACCGGCGCCTATTGGAGAT 61.696 55.000 26.68 7.36 34.95 2.75
103 104 1.669115 CCGGCGCCTATTGGAGATG 60.669 63.158 26.68 4.04 34.95 2.90
104 105 2.320587 CGGCGCCTATTGGAGATGC 61.321 63.158 26.68 0.00 34.95 3.91
105 106 1.072159 GGCGCCTATTGGAGATGCT 59.928 57.895 22.15 0.00 34.95 3.79
106 107 0.952984 GGCGCCTATTGGAGATGCTC 60.953 60.000 22.15 0.00 34.95 4.26
107 108 0.034616 GCGCCTATTGGAGATGCTCT 59.965 55.000 0.00 0.00 34.95 4.09
108 109 1.273606 GCGCCTATTGGAGATGCTCTA 59.726 52.381 0.00 0.00 34.95 2.43
109 110 2.289072 GCGCCTATTGGAGATGCTCTAA 60.289 50.000 0.00 0.00 35.57 2.10
110 111 3.803715 GCGCCTATTGGAGATGCTCTAAA 60.804 47.826 0.00 0.00 34.82 1.85
111 112 3.993081 CGCCTATTGGAGATGCTCTAAAG 59.007 47.826 0.00 0.00 34.82 1.85
112 113 3.750652 GCCTATTGGAGATGCTCTAAAGC 59.249 47.826 0.00 0.00 41.78 3.51
126 127 5.757850 CTCTAAAGCAACAACTCCAAGTT 57.242 39.130 0.00 0.00 39.39 2.66
127 128 6.861065 CTCTAAAGCAACAACTCCAAGTTA 57.139 37.500 0.00 0.00 36.03 2.24
128 129 7.440523 CTCTAAAGCAACAACTCCAAGTTAT 57.559 36.000 0.00 0.00 36.03 1.89
129 130 8.547967 CTCTAAAGCAACAACTCCAAGTTATA 57.452 34.615 0.00 0.00 36.03 0.98
130 131 8.319143 TCTAAAGCAACAACTCCAAGTTATAC 57.681 34.615 0.00 0.00 36.03 1.47
131 132 6.952773 AAAGCAACAACTCCAAGTTATACA 57.047 33.333 0.00 0.00 36.03 2.29
132 133 6.560253 AAGCAACAACTCCAAGTTATACAG 57.440 37.500 0.00 0.00 36.03 2.74
133 134 4.455877 AGCAACAACTCCAAGTTATACAGC 59.544 41.667 0.00 0.00 36.03 4.40
134 135 4.669197 GCAACAACTCCAAGTTATACAGCG 60.669 45.833 0.00 0.00 36.03 5.18
135 136 3.596214 ACAACTCCAAGTTATACAGCGG 58.404 45.455 0.00 0.00 36.03 5.52
136 137 3.259876 ACAACTCCAAGTTATACAGCGGA 59.740 43.478 0.00 0.00 36.03 5.54
137 138 4.250464 CAACTCCAAGTTATACAGCGGAA 58.750 43.478 0.00 0.00 36.03 4.30
138 139 3.858247 ACTCCAAGTTATACAGCGGAAC 58.142 45.455 0.00 0.00 0.00 3.62
139 140 5.149263 AACTCCAAGTTATACAGCGGAACG 61.149 45.833 0.00 0.00 46.96 3.95
158 159 7.573916 GGAACGATACAATGTGATGAGATAG 57.426 40.000 0.00 0.00 0.00 2.08
159 160 6.090088 GGAACGATACAATGTGATGAGATAGC 59.910 42.308 0.00 0.00 0.00 2.97
160 161 5.473931 ACGATACAATGTGATGAGATAGCC 58.526 41.667 0.00 0.00 0.00 3.93
161 162 4.867047 CGATACAATGTGATGAGATAGCCC 59.133 45.833 0.00 0.00 0.00 5.19
162 163 5.337089 CGATACAATGTGATGAGATAGCCCT 60.337 44.000 0.00 0.00 0.00 5.19
163 164 4.348863 ACAATGTGATGAGATAGCCCTC 57.651 45.455 0.00 0.00 0.00 4.30
164 165 3.972638 ACAATGTGATGAGATAGCCCTCT 59.027 43.478 0.00 0.00 34.38 3.69
165 166 4.202336 ACAATGTGATGAGATAGCCCTCTG 60.202 45.833 0.00 0.00 34.38 3.35
166 167 3.319031 TGTGATGAGATAGCCCTCTGA 57.681 47.619 0.00 0.00 34.38 3.27
167 168 2.961741 TGTGATGAGATAGCCCTCTGAC 59.038 50.000 0.00 0.00 34.38 3.51
168 169 2.961741 GTGATGAGATAGCCCTCTGACA 59.038 50.000 0.00 0.00 34.38 3.58
169 170 2.961741 TGATGAGATAGCCCTCTGACAC 59.038 50.000 0.00 0.00 34.38 3.67
170 171 2.532250 TGAGATAGCCCTCTGACACA 57.468 50.000 0.00 0.00 34.38 3.72
171 172 2.382882 TGAGATAGCCCTCTGACACAG 58.617 52.381 0.00 0.00 34.38 3.66
172 173 1.068434 GAGATAGCCCTCTGACACAGC 59.932 57.143 0.00 0.00 0.00 4.40
173 174 0.826715 GATAGCCCTCTGACACAGCA 59.173 55.000 0.00 0.00 0.00 4.41
174 175 0.829333 ATAGCCCTCTGACACAGCAG 59.171 55.000 0.00 0.00 37.24 4.24
175 176 0.251787 TAGCCCTCTGACACAGCAGA 60.252 55.000 0.00 0.00 42.31 4.26
176 177 1.375268 GCCCTCTGACACAGCAGAC 60.375 63.158 0.00 0.00 39.84 3.51
177 178 1.294780 CCCTCTGACACAGCAGACC 59.705 63.158 0.00 0.00 39.84 3.85
178 179 1.294780 CCTCTGACACAGCAGACCC 59.705 63.158 0.00 0.00 39.84 4.46
179 180 1.190833 CCTCTGACACAGCAGACCCT 61.191 60.000 0.00 0.00 39.84 4.34
180 181 0.037512 CTCTGACACAGCAGACCCTG 60.038 60.000 0.00 0.00 39.84 4.45
181 182 0.469892 TCTGACACAGCAGACCCTGA 60.470 55.000 0.00 0.00 39.84 3.86
182 183 0.394192 CTGACACAGCAGACCCTGAA 59.606 55.000 0.00 0.00 38.14 3.02
183 184 0.836606 TGACACAGCAGACCCTGAAA 59.163 50.000 0.00 0.00 36.67 2.69
184 185 1.421268 TGACACAGCAGACCCTGAAAT 59.579 47.619 0.00 0.00 36.67 2.17
185 186 1.808945 GACACAGCAGACCCTGAAATG 59.191 52.381 0.00 0.00 36.67 2.32
186 187 1.421268 ACACAGCAGACCCTGAAATGA 59.579 47.619 0.00 0.00 36.67 2.57
187 188 2.040813 ACACAGCAGACCCTGAAATGAT 59.959 45.455 0.00 0.00 36.67 2.45
188 189 3.264193 ACACAGCAGACCCTGAAATGATA 59.736 43.478 0.00 0.00 36.67 2.15
189 190 3.875727 CACAGCAGACCCTGAAATGATAG 59.124 47.826 0.00 0.00 36.67 2.08
190 191 3.118112 ACAGCAGACCCTGAAATGATAGG 60.118 47.826 0.00 0.00 36.67 2.57
191 192 2.158696 AGCAGACCCTGAAATGATAGGC 60.159 50.000 0.00 0.00 32.44 3.93
192 193 2.856222 CAGACCCTGAAATGATAGGCC 58.144 52.381 0.00 0.00 32.44 5.19
193 194 2.173356 CAGACCCTGAAATGATAGGCCA 59.827 50.000 5.01 0.00 32.44 5.36
194 195 2.852449 AGACCCTGAAATGATAGGCCAA 59.148 45.455 5.01 0.00 32.58 4.52
195 196 2.952310 GACCCTGAAATGATAGGCCAAC 59.048 50.000 5.01 0.00 32.58 3.77
196 197 2.311542 ACCCTGAAATGATAGGCCAACA 59.688 45.455 5.01 1.63 32.58 3.33
197 198 3.052642 ACCCTGAAATGATAGGCCAACAT 60.053 43.478 5.01 4.36 32.58 2.71
198 199 4.167892 ACCCTGAAATGATAGGCCAACATA 59.832 41.667 5.01 0.00 32.58 2.29
199 200 5.139727 CCCTGAAATGATAGGCCAACATAA 58.860 41.667 5.01 0.00 32.58 1.90
200 201 5.010012 CCCTGAAATGATAGGCCAACATAAC 59.990 44.000 5.01 5.99 32.58 1.89
201 202 5.010012 CCTGAAATGATAGGCCAACATAACC 59.990 44.000 5.01 1.62 0.00 2.85
202 203 5.514169 TGAAATGATAGGCCAACATAACCA 58.486 37.500 5.01 4.03 0.00 3.67
203 204 6.135454 TGAAATGATAGGCCAACATAACCAT 58.865 36.000 5.01 0.00 0.00 3.55
204 205 7.293828 TGAAATGATAGGCCAACATAACCATA 58.706 34.615 5.01 0.00 0.00 2.74
205 206 7.949565 TGAAATGATAGGCCAACATAACCATAT 59.050 33.333 5.01 0.00 0.00 1.78
206 207 7.707624 AATGATAGGCCAACATAACCATATG 57.292 36.000 5.01 0.00 43.79 1.78
207 208 6.446909 TGATAGGCCAACATAACCATATGA 57.553 37.500 5.01 0.00 41.25 2.15
208 209 6.237901 TGATAGGCCAACATAACCATATGAC 58.762 40.000 5.01 0.00 41.25 3.06
209 210 4.796110 AGGCCAACATAACCATATGACT 57.204 40.909 5.01 0.00 41.25 3.41
210 211 5.904984 AGGCCAACATAACCATATGACTA 57.095 39.130 5.01 0.00 41.25 2.59
211 212 5.621193 AGGCCAACATAACCATATGACTAC 58.379 41.667 5.01 0.00 41.25 2.73
212 213 4.451096 GGCCAACATAACCATATGACTACG 59.549 45.833 3.65 0.00 41.25 3.51
213 214 5.054477 GCCAACATAACCATATGACTACGT 58.946 41.667 3.65 0.00 41.25 3.57
214 215 5.050363 GCCAACATAACCATATGACTACGTG 60.050 44.000 3.65 0.00 41.25 4.49
215 216 5.465390 CCAACATAACCATATGACTACGTGG 59.535 44.000 3.65 0.00 41.25 4.94
216 217 4.628074 ACATAACCATATGACTACGTGGC 58.372 43.478 3.65 0.00 41.25 5.01
217 218 2.614829 AACCATATGACTACGTGGCC 57.385 50.000 3.65 0.00 35.11 5.36
218 219 0.387929 ACCATATGACTACGTGGCCG 59.612 55.000 3.65 0.00 40.83 6.13
219 220 0.671796 CCATATGACTACGTGGCCGA 59.328 55.000 3.65 0.00 37.88 5.54
220 221 1.067974 CCATATGACTACGTGGCCGAA 59.932 52.381 3.65 0.00 37.88 4.30
221 222 2.124903 CATATGACTACGTGGCCGAAC 58.875 52.381 0.00 0.00 37.88 3.95
222 223 1.175654 TATGACTACGTGGCCGAACA 58.824 50.000 0.00 0.00 37.88 3.18
223 224 0.389426 ATGACTACGTGGCCGAACAC 60.389 55.000 0.00 0.00 37.88 3.32
224 225 1.735559 GACTACGTGGCCGAACACC 60.736 63.158 0.00 0.00 38.11 4.16
225 226 2.151049 GACTACGTGGCCGAACACCT 62.151 60.000 0.00 0.00 38.11 4.00
226 227 0.895100 ACTACGTGGCCGAACACCTA 60.895 55.000 0.00 0.00 38.11 3.08
227 228 0.244450 CTACGTGGCCGAACACCTAA 59.756 55.000 0.00 0.00 38.11 2.69
228 229 0.244450 TACGTGGCCGAACACCTAAG 59.756 55.000 0.00 0.00 38.11 2.18
229 230 1.005394 CGTGGCCGAACACCTAAGT 60.005 57.895 0.00 0.00 38.11 2.24
230 231 0.244450 CGTGGCCGAACACCTAAGTA 59.756 55.000 0.00 0.00 38.11 2.24
231 232 1.718396 GTGGCCGAACACCTAAGTAC 58.282 55.000 0.00 0.00 35.34 2.73
232 233 1.001181 GTGGCCGAACACCTAAGTACA 59.999 52.381 0.00 0.00 35.34 2.90
233 234 1.274167 TGGCCGAACACCTAAGTACAG 59.726 52.381 0.00 0.00 0.00 2.74
234 235 1.405121 GGCCGAACACCTAAGTACAGG 60.405 57.143 0.00 0.00 41.87 4.00
235 236 1.547372 GCCGAACACCTAAGTACAGGA 59.453 52.381 6.26 0.00 39.18 3.86
236 237 2.673326 GCCGAACACCTAAGTACAGGAC 60.673 54.545 6.26 0.00 39.18 3.85
237 238 2.415090 CCGAACACCTAAGTACAGGACG 60.415 54.545 6.26 6.23 39.18 4.79
238 239 2.485426 CGAACACCTAAGTACAGGACGA 59.515 50.000 6.26 0.00 39.18 4.20
239 240 3.669023 CGAACACCTAAGTACAGGACGAC 60.669 52.174 6.26 0.00 39.18 4.34
240 241 2.165998 ACACCTAAGTACAGGACGACC 58.834 52.381 6.26 0.00 39.18 4.79
241 242 2.165167 CACCTAAGTACAGGACGACCA 58.835 52.381 6.71 0.00 39.18 4.02
242 243 2.163815 CACCTAAGTACAGGACGACCAG 59.836 54.545 6.71 0.00 39.18 4.00
243 244 2.040813 ACCTAAGTACAGGACGACCAGA 59.959 50.000 6.71 0.00 39.18 3.86
244 245 3.288964 CCTAAGTACAGGACGACCAGAT 58.711 50.000 6.71 0.00 38.00 2.90
245 246 3.700038 CCTAAGTACAGGACGACCAGATT 59.300 47.826 6.71 0.00 38.00 2.40
246 247 4.885907 CCTAAGTACAGGACGACCAGATTA 59.114 45.833 6.71 1.02 38.00 1.75
247 248 4.715527 AAGTACAGGACGACCAGATTAC 57.284 45.455 6.71 1.93 38.94 1.89
248 249 3.693807 AGTACAGGACGACCAGATTACA 58.306 45.455 6.71 0.00 38.94 2.41
249 250 4.084287 AGTACAGGACGACCAGATTACAA 58.916 43.478 6.71 0.00 38.94 2.41
250 251 3.314541 ACAGGACGACCAGATTACAAC 57.685 47.619 6.71 0.00 38.94 3.32
251 252 2.259618 CAGGACGACCAGATTACAACG 58.740 52.381 6.71 0.00 38.94 4.10
312 313 6.405278 TCTCTCGGATTATGAAATGCTGTA 57.595 37.500 0.00 0.00 31.64 2.74
337 339 1.633945 TCCTGCTACCCCTCTTTTTCC 59.366 52.381 0.00 0.00 0.00 3.13
442 444 0.103572 CCATTGCCATTGCTGCCTAC 59.896 55.000 0.00 0.00 38.71 3.18
443 445 1.108776 CATTGCCATTGCTGCCTACT 58.891 50.000 0.00 0.00 38.71 2.57
470 472 4.399978 GCATCAAGCATTTTGACAATTGC 58.600 39.130 5.05 13.15 44.79 3.56
478 480 4.093850 GCATTTTGACAATTGCCATTCTCC 59.906 41.667 5.05 0.00 34.49 3.71
479 481 5.484715 CATTTTGACAATTGCCATTCTCCT 58.515 37.500 5.05 0.00 0.00 3.69
480 482 4.789012 TTTGACAATTGCCATTCTCCTC 57.211 40.909 5.05 0.00 0.00 3.71
481 483 3.726557 TGACAATTGCCATTCTCCTCT 57.273 42.857 5.05 0.00 0.00 3.69
482 484 3.614092 TGACAATTGCCATTCTCCTCTC 58.386 45.455 5.05 0.00 0.00 3.20
530 532 4.275936 ACAATGCATAAAGATTACTCCCGC 59.724 41.667 0.00 0.00 0.00 6.13
547 549 0.958382 CGCCCCGTCCATTTTTCAGA 60.958 55.000 0.00 0.00 0.00 3.27
553 555 3.367292 CCCGTCCATTTTTCAGACCAATG 60.367 47.826 0.00 0.00 0.00 2.82
564 827 0.968901 AGACCAATGCAGGTGCCATG 60.969 55.000 1.69 0.00 43.38 3.66
569 832 2.162338 AATGCAGGTGCCATGTGTGC 62.162 55.000 0.00 0.00 41.18 4.57
570 833 4.409218 GCAGGTGCCATGTGTGCG 62.409 66.667 0.00 0.00 34.31 5.34
571 834 2.979676 CAGGTGCCATGTGTGCGT 60.980 61.111 0.00 0.00 0.00 5.24
572 835 1.670730 CAGGTGCCATGTGTGCGTA 60.671 57.895 0.00 0.00 0.00 4.42
573 836 1.026182 CAGGTGCCATGTGTGCGTAT 61.026 55.000 0.00 0.00 0.00 3.06
600 863 2.203153 ACTGCCCACACCACGAAC 60.203 61.111 0.00 0.00 0.00 3.95
635 898 8.405531 TGAAAACTTGTGAATCTTGGTAAGAAG 58.594 33.333 0.00 0.00 41.63 2.85
637 900 8.974060 AAACTTGTGAATCTTGGTAAGAAGTA 57.026 30.769 0.00 0.00 41.63 2.24
649 912 7.495279 TCTTGGTAAGAAGTAAAAACACGCTTA 59.505 33.333 0.00 0.00 33.83 3.09
682 1518 0.539051 ATCGGAAGCCCTGAACTGAG 59.461 55.000 0.00 0.00 0.00 3.35
763 1599 2.609459 CGATGCCAGTTTAGGTGTGATC 59.391 50.000 0.00 0.00 0.00 2.92
767 1603 5.435686 TGCCAGTTTAGGTGTGATCTTAT 57.564 39.130 0.00 0.00 0.00 1.73
768 1604 5.815581 TGCCAGTTTAGGTGTGATCTTATT 58.184 37.500 0.00 0.00 0.00 1.40
769 1605 6.245408 TGCCAGTTTAGGTGTGATCTTATTT 58.755 36.000 0.00 0.00 0.00 1.40
770 1606 6.719370 TGCCAGTTTAGGTGTGATCTTATTTT 59.281 34.615 0.00 0.00 0.00 1.82
771 1607 7.232534 TGCCAGTTTAGGTGTGATCTTATTTTT 59.767 33.333 0.00 0.00 0.00 1.94
772 1608 7.755373 GCCAGTTTAGGTGTGATCTTATTTTTC 59.245 37.037 0.00 0.00 0.00 2.29
773 1609 9.014297 CCAGTTTAGGTGTGATCTTATTTTTCT 57.986 33.333 0.00 0.00 0.00 2.52
774 1610 9.831737 CAGTTTAGGTGTGATCTTATTTTTCTG 57.168 33.333 0.00 0.00 0.00 3.02
775 1611 9.793259 AGTTTAGGTGTGATCTTATTTTTCTGA 57.207 29.630 0.00 0.00 0.00 3.27
778 1614 9.658799 TTAGGTGTGATCTTATTTTTCTGAGAG 57.341 33.333 0.00 0.00 0.00 3.20
779 1615 7.911651 AGGTGTGATCTTATTTTTCTGAGAGA 58.088 34.615 0.00 0.00 0.00 3.10
780 1616 8.378565 AGGTGTGATCTTATTTTTCTGAGAGAA 58.621 33.333 0.00 0.00 31.28 2.87
781 1617 8.663911 GGTGTGATCTTATTTTTCTGAGAGAAG 58.336 37.037 0.00 0.00 35.37 2.85
782 1618 9.213799 GTGTGATCTTATTTTTCTGAGAGAAGT 57.786 33.333 0.00 0.00 35.37 3.01
783 1619 9.784531 TGTGATCTTATTTTTCTGAGAGAAGTT 57.215 29.630 0.00 0.00 35.37 2.66
790 1626 9.847224 TTATTTTTCTGAGAGAAGTTTAGGTGT 57.153 29.630 0.00 0.00 35.37 4.16
791 1627 7.553881 TTTTTCTGAGAGAAGTTTAGGTGTG 57.446 36.000 0.00 0.00 35.37 3.82
792 1628 6.479972 TTTCTGAGAGAAGTTTAGGTGTGA 57.520 37.500 0.00 0.00 35.37 3.58
793 1629 6.672266 TTCTGAGAGAAGTTTAGGTGTGAT 57.328 37.500 0.00 0.00 29.50 3.06
794 1630 6.672266 TCTGAGAGAAGTTTAGGTGTGATT 57.328 37.500 0.00 0.00 0.00 2.57
795 1631 7.067496 TCTGAGAGAAGTTTAGGTGTGATTT 57.933 36.000 0.00 0.00 0.00 2.17
844 1680 2.029844 GCAGACGTCCTCAGGCAAC 61.030 63.158 13.01 0.00 0.00 4.17
845 1681 1.367471 CAGACGTCCTCAGGCAACA 59.633 57.895 13.01 0.00 41.41 3.33
846 1682 0.946221 CAGACGTCCTCAGGCAACAC 60.946 60.000 13.01 0.00 41.41 3.32
854 1690 1.546323 CCTCAGGCAACACAAGTCCAT 60.546 52.381 0.00 0.00 41.41 3.41
856 1692 0.599558 CAGGCAACACAAGTCCATGG 59.400 55.000 4.97 4.97 41.41 3.66
857 1693 0.478072 AGGCAACACAAGTCCATGGA 59.522 50.000 11.44 11.44 41.41 3.41
895 1731 4.082949 GCTGGTTCTTGTATACCAAACACC 60.083 45.833 0.00 1.40 43.46 4.16
939 1775 4.935352 TCATTTTTATATGGCACTGGGC 57.065 40.909 0.00 0.00 43.74 5.36
961 1797 3.117171 CAGTCGCAGCTCACAGGC 61.117 66.667 0.00 0.00 0.00 4.85
983 1819 4.934001 GCCCATATATAGCATCGATCATGG 59.066 45.833 0.00 0.50 32.37 3.66
1033 1886 2.558359 AGGCCACAGTTGTTTAAGCATC 59.442 45.455 5.01 0.00 0.00 3.91
1071 1943 6.126652 ACCAATAATCTGCACAGATAGGAAGT 60.127 38.462 13.32 6.64 46.75 3.01
1072 1944 6.204301 CCAATAATCTGCACAGATAGGAAGTG 59.796 42.308 13.32 8.86 46.75 3.16
1077 1949 1.661341 CACAGATAGGAAGTGCAGGC 58.339 55.000 0.00 0.00 0.00 4.85
1078 1950 1.209019 CACAGATAGGAAGTGCAGGCT 59.791 52.381 0.00 0.00 0.00 4.58
1079 1951 2.432146 CACAGATAGGAAGTGCAGGCTA 59.568 50.000 0.00 0.00 0.00 3.93
1080 1952 2.697751 ACAGATAGGAAGTGCAGGCTAG 59.302 50.000 0.00 0.00 0.00 3.42
1081 1953 2.961741 CAGATAGGAAGTGCAGGCTAGA 59.038 50.000 0.00 0.00 0.00 2.43
1082 1954 3.386078 CAGATAGGAAGTGCAGGCTAGAA 59.614 47.826 0.00 0.00 0.00 2.10
1083 1955 3.640967 AGATAGGAAGTGCAGGCTAGAAG 59.359 47.826 0.00 0.00 0.00 2.85
1086 1958 1.611673 GGAAGTGCAGGCTAGAAGCAA 60.612 52.381 0.00 0.00 44.75 3.91
1126 2004 1.284198 AGATCTCTTGTTGCCATGGCT 59.716 47.619 35.53 13.80 42.51 4.75
1145 2023 3.409026 CTTCCTTCAAGCTGGTACACT 57.591 47.619 0.00 0.00 0.00 3.55
1155 2033 1.264288 GCTGGTACACTTGTGCTTCAC 59.736 52.381 0.10 0.00 34.56 3.18
1158 2036 1.264288 GGTACACTTGTGCTTCACAGC 59.736 52.381 0.10 0.00 45.39 4.40
1159 2037 1.264288 GTACACTTGTGCTTCACAGCC 59.736 52.381 0.10 0.00 45.39 4.85
1162 2040 1.280746 CTTGTGCTTCACAGCCGTG 59.719 57.895 0.00 0.00 45.39 4.94
1163 2041 2.722130 CTTGTGCTTCACAGCCGTGC 62.722 60.000 0.00 0.00 45.39 5.34
1173 2051 3.933722 AGCCGTGCTGCTCTGTGT 61.934 61.111 0.00 0.00 36.75 3.72
1176 2054 2.250485 CGTGCTGCTCTGTGTTGC 59.750 61.111 0.00 0.00 0.00 4.17
1198 2076 3.594134 CTTCTCCTGTTGCAGAGGTAAG 58.406 50.000 12.36 12.58 32.44 2.34
1199 2077 2.609747 TCTCCTGTTGCAGAGGTAAGT 58.390 47.619 12.36 0.00 32.44 2.24
1200 2078 3.774734 TCTCCTGTTGCAGAGGTAAGTA 58.225 45.455 12.36 0.00 32.44 2.24
1201 2079 4.157246 TCTCCTGTTGCAGAGGTAAGTAA 58.843 43.478 12.36 0.00 32.44 2.24
1206 2084 5.049405 CCTGTTGCAGAGGTAAGTAAAGTTG 60.049 44.000 5.81 0.00 32.44 3.16
1213 2091 6.350277 GCAGAGGTAAGTAAAGTTGAGCTCTA 60.350 42.308 16.19 4.09 41.70 2.43
1214 2092 7.030768 CAGAGGTAAGTAAAGTTGAGCTCTAC 58.969 42.308 19.04 19.04 41.70 2.59
1216 2094 7.121611 AGAGGTAAGTAAAGTTGAGCTCTACTC 59.878 40.741 27.29 16.78 41.79 2.59
1219 2097 5.652994 AGTAAAGTTGAGCTCTACTCTGG 57.347 43.478 27.29 0.00 46.41 3.86
1220 2098 3.326836 AAAGTTGAGCTCTACTCTGGC 57.673 47.619 27.29 2.47 46.41 4.85
1222 2100 1.824230 AGTTGAGCTCTACTCTGGCTG 59.176 52.381 22.83 0.00 46.41 4.85
1223 2101 0.534412 TTGAGCTCTACTCTGGCTGC 59.466 55.000 16.19 0.00 46.41 5.25
1224 2102 0.324183 TGAGCTCTACTCTGGCTGCT 60.324 55.000 16.19 0.00 46.41 4.24
1226 2104 0.823460 AGCTCTACTCTGGCTGCTTC 59.177 55.000 0.00 0.00 34.82 3.86
1227 2105 0.534412 GCTCTACTCTGGCTGCTTCA 59.466 55.000 0.00 0.00 0.00 3.02
1228 2106 1.738700 GCTCTACTCTGGCTGCTTCAC 60.739 57.143 0.00 0.00 0.00 3.18
1230 2108 2.233431 CTCTACTCTGGCTGCTTCACTT 59.767 50.000 0.00 0.00 0.00 3.16
1231 2109 2.634940 TCTACTCTGGCTGCTTCACTTT 59.365 45.455 0.00 0.00 0.00 2.66
1232 2110 1.602311 ACTCTGGCTGCTTCACTTTG 58.398 50.000 0.00 0.00 0.00 2.77
1233 2111 1.133976 ACTCTGGCTGCTTCACTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
1234 2112 1.534595 CTCTGGCTGCTTCACTTTGTC 59.465 52.381 0.00 0.00 0.00 3.18
1235 2113 1.141657 TCTGGCTGCTTCACTTTGTCT 59.858 47.619 0.00 0.00 0.00 3.41
1236 2114 1.266175 CTGGCTGCTTCACTTTGTCTG 59.734 52.381 0.00 0.00 0.00 3.51
1238 2116 1.678101 GGCTGCTTCACTTTGTCTGTT 59.322 47.619 0.00 0.00 0.00 3.16
1239 2117 2.287248 GGCTGCTTCACTTTGTCTGTTC 60.287 50.000 0.00 0.00 0.00 3.18
1240 2118 2.355756 GCTGCTTCACTTTGTCTGTTCA 59.644 45.455 0.00 0.00 0.00 3.18
1241 2119 3.004106 GCTGCTTCACTTTGTCTGTTCAT 59.996 43.478 0.00 0.00 0.00 2.57
1242 2120 4.534168 CTGCTTCACTTTGTCTGTTCATG 58.466 43.478 0.00 0.00 0.00 3.07
1243 2121 4.198530 TGCTTCACTTTGTCTGTTCATGA 58.801 39.130 0.00 0.00 0.00 3.07
1244 2122 4.035558 TGCTTCACTTTGTCTGTTCATGAC 59.964 41.667 0.00 0.00 35.21 3.06
1245 2123 4.555511 GCTTCACTTTGTCTGTTCATGACC 60.556 45.833 0.00 0.00 33.83 4.02
1247 2125 2.224079 CACTTTGTCTGTTCATGACCCG 59.776 50.000 0.00 0.00 33.83 5.28
1249 2127 3.070446 ACTTTGTCTGTTCATGACCCGTA 59.930 43.478 0.00 0.00 33.83 4.02
1250 2128 2.736144 TGTCTGTTCATGACCCGTAC 57.264 50.000 0.00 0.00 33.83 3.67
1253 2131 2.093658 GTCTGTTCATGACCCGTACCAT 60.094 50.000 0.00 0.00 0.00 3.55
1254 2132 2.093711 TCTGTTCATGACCCGTACCATG 60.094 50.000 0.00 4.07 40.97 3.66
1255 2133 1.065782 TGTTCATGACCCGTACCATGG 60.066 52.381 11.19 11.19 40.26 3.66
1256 2134 1.065709 GTTCATGACCCGTACCATGGT 60.066 52.381 23.55 23.55 40.26 3.55
1257 2135 1.281419 TCATGACCCGTACCATGGTT 58.719 50.000 25.38 3.66 40.26 3.67
1258 2136 1.631388 TCATGACCCGTACCATGGTTT 59.369 47.619 25.38 0.23 40.26 3.27
1259 2137 2.838813 TCATGACCCGTACCATGGTTTA 59.161 45.455 25.38 2.07 40.26 2.01
1260 2138 2.766345 TGACCCGTACCATGGTTTAC 57.234 50.000 25.38 15.41 34.20 2.01
1261 2139 2.259012 TGACCCGTACCATGGTTTACT 58.741 47.619 25.38 0.00 34.20 2.24
1262 2140 2.027929 TGACCCGTACCATGGTTTACTG 60.028 50.000 25.38 12.31 34.20 2.74
1263 2141 1.980036 ACCCGTACCATGGTTTACTGT 59.020 47.619 25.38 12.61 0.00 3.55
1264 2142 2.027837 ACCCGTACCATGGTTTACTGTC 60.028 50.000 25.38 4.58 0.00 3.51
1265 2143 2.027929 CCCGTACCATGGTTTACTGTCA 60.028 50.000 25.38 0.00 0.00 3.58
1266 2144 3.259064 CCGTACCATGGTTTACTGTCAG 58.741 50.000 25.38 2.79 0.00 3.51
1267 2145 3.056393 CCGTACCATGGTTTACTGTCAGA 60.056 47.826 25.38 0.00 0.00 3.27
1268 2146 4.561938 CCGTACCATGGTTTACTGTCAGAA 60.562 45.833 25.38 0.00 0.00 3.02
1269 2147 4.387862 CGTACCATGGTTTACTGTCAGAAC 59.612 45.833 25.38 9.33 0.00 3.01
1270 2148 3.751518 ACCATGGTTTACTGTCAGAACC 58.248 45.455 13.00 14.00 42.44 3.62
1273 2151 2.828877 TGGTTTACTGTCAGAACCACG 58.171 47.619 17.94 0.00 45.69 4.94
1274 2152 2.168936 TGGTTTACTGTCAGAACCACGT 59.831 45.455 17.94 0.00 45.69 4.49
1275 2153 3.200483 GGTTTACTGTCAGAACCACGTT 58.800 45.455 15.39 0.00 41.86 3.99
1276 2154 4.141981 TGGTTTACTGTCAGAACCACGTTA 60.142 41.667 17.94 0.82 45.69 3.18
1283 2161 5.243283 ACTGTCAGAACCACGTTACTAATCT 59.757 40.000 6.91 0.00 0.00 2.40
1285 2163 4.863131 GTCAGAACCACGTTACTAATCTGG 59.137 45.833 0.00 0.00 34.91 3.86
1291 2169 4.081807 ACCACGTTACTAATCTGGTTCTCC 60.082 45.833 0.00 0.00 30.73 3.71
1293 2171 5.341617 CACGTTACTAATCTGGTTCTCCTC 58.658 45.833 0.00 0.00 34.23 3.71
1295 2173 5.125739 ACGTTACTAATCTGGTTCTCCTCTG 59.874 44.000 0.00 0.00 34.23 3.35
1298 2176 4.430441 ACTAATCTGGTTCTCCTCTGGTT 58.570 43.478 0.00 0.00 34.23 3.67
1321 2199 2.614969 AATGCAGGGCAGGGAGGA 60.615 61.111 0.00 0.00 43.65 3.71
1354 2241 3.397439 GGAGCAGGAGCAGGAGCA 61.397 66.667 0.00 0.00 45.49 4.26
1462 2350 7.880713 TGCTTTGACAACAGACCAGTAATAATA 59.119 33.333 0.00 0.00 0.00 0.98
1463 2351 8.391106 GCTTTGACAACAGACCAGTAATAATAG 58.609 37.037 0.00 0.00 0.00 1.73
1464 2352 7.843490 TTGACAACAGACCAGTAATAATAGC 57.157 36.000 0.00 0.00 0.00 2.97
1480 2368 2.124277 TAGCCTCTCGTCTGCACTTA 57.876 50.000 0.00 0.00 0.00 2.24
1481 2369 0.528470 AGCCTCTCGTCTGCACTTAC 59.472 55.000 0.00 0.00 0.00 2.34
1482 2370 0.528470 GCCTCTCGTCTGCACTTACT 59.472 55.000 0.00 0.00 0.00 2.24
1483 2371 1.468395 GCCTCTCGTCTGCACTTACTC 60.468 57.143 0.00 0.00 0.00 2.59
1484 2372 1.202087 CCTCTCGTCTGCACTTACTCG 60.202 57.143 0.00 0.00 0.00 4.18
1485 2373 1.465387 CTCTCGTCTGCACTTACTCGT 59.535 52.381 0.00 0.00 0.00 4.18
1486 2374 2.671888 CTCTCGTCTGCACTTACTCGTA 59.328 50.000 0.00 0.00 0.00 3.43
1487 2375 2.671888 TCTCGTCTGCACTTACTCGTAG 59.328 50.000 0.00 0.00 0.00 3.51
1488 2376 2.415857 CTCGTCTGCACTTACTCGTAGT 59.584 50.000 0.00 0.00 0.00 2.73
1489 2377 2.414481 TCGTCTGCACTTACTCGTAGTC 59.586 50.000 0.00 0.00 0.00 2.59
1492 2380 2.747989 TCTGCACTTACTCGTAGTCAGG 59.252 50.000 0.00 0.00 0.00 3.86
1518 2410 2.506962 CGGCCGGCTAATGGGTAA 59.493 61.111 28.56 0.00 0.00 2.85
1523 2415 2.028876 GCCGGCTAATGGGTAACAAAT 58.971 47.619 22.15 0.00 39.74 2.32
1524 2416 2.223711 GCCGGCTAATGGGTAACAAATG 60.224 50.000 22.15 0.00 39.74 2.32
1531 2423 2.783828 TGGGTAACAAATGTTGCGTG 57.216 45.000 8.99 0.00 40.77 5.34
1532 2424 1.269309 TGGGTAACAAATGTTGCGTGC 60.269 47.619 8.99 0.00 40.77 5.34
1533 2425 1.269309 GGGTAACAAATGTTGCGTGCA 60.269 47.619 8.99 0.00 40.77 4.57
1534 2426 2.609244 GGGTAACAAATGTTGCGTGCAT 60.609 45.455 8.99 0.00 40.77 3.96
1873 2813 4.856801 CCGGCGGTGGAATGGGAG 62.857 72.222 19.97 0.00 0.00 4.30
1874 2814 4.856801 CGGCGGTGGAATGGGAGG 62.857 72.222 0.00 0.00 0.00 4.30
1877 2817 4.856801 CGGTGGAATGGGAGGCGG 62.857 72.222 0.00 0.00 0.00 6.13
1878 2818 4.506255 GGTGGAATGGGAGGCGGG 62.506 72.222 0.00 0.00 0.00 6.13
1947 2917 1.376609 CCGGTGGCATTCCTAACAGC 61.377 60.000 0.00 0.00 0.00 4.40
2021 2991 2.528797 CCAGTGGCACTACGAACAC 58.471 57.895 21.59 0.00 0.00 3.32
2162 3818 2.489938 TCACCCAATGCAGGTAAGAC 57.510 50.000 0.00 0.00 35.24 3.01
2163 3819 1.004277 TCACCCAATGCAGGTAAGACC 59.996 52.381 0.00 0.00 38.99 3.85
2177 3833 3.371273 GGTAAGACCAACACCTAATCCCC 60.371 52.174 0.00 0.00 38.42 4.81
2193 3849 1.616374 TCCCCGGAGCAAAATTTCAAC 59.384 47.619 0.73 0.00 0.00 3.18
2202 3858 6.346838 CGGAGCAAAATTTCAACATTTCCTTC 60.347 38.462 0.00 0.00 0.00 3.46
2225 3881 4.609559 CGAGATCGAGAGACTATTGGAACG 60.610 50.000 0.00 0.00 46.97 3.95
2234 3890 1.535462 ACTATTGGAACGCTGCAACAC 59.465 47.619 0.00 0.00 35.51 3.32
2245 3901 0.436913 CTGCAACACGCGACGAAATA 59.563 50.000 15.93 0.00 46.97 1.40
2254 3910 3.544682 CACGCGACGAAATATTCAGTGTA 59.455 43.478 15.93 0.00 0.00 2.90
2271 3930 5.524281 TCAGTGTAGTAACATTTTTGCGTGA 59.476 36.000 0.00 0.00 38.08 4.35
2272 3931 6.037281 TCAGTGTAGTAACATTTTTGCGTGAA 59.963 34.615 0.00 0.00 38.08 3.18
2273 3932 6.140108 CAGTGTAGTAACATTTTTGCGTGAAC 59.860 38.462 0.00 0.00 38.08 3.18
2274 3933 5.112937 GTGTAGTAACATTTTTGCGTGAACG 59.887 40.000 0.00 0.00 38.08 3.95
2423 4082 0.176910 GGCTGGTGCTCTTCTAGGTC 59.823 60.000 0.00 0.00 39.59 3.85
2430 4089 1.821753 TGCTCTTCTAGGTCTGACAGC 59.178 52.381 10.38 8.43 0.00 4.40
2463 4122 3.873883 GCTGCAGCGGCTGTGATC 61.874 66.667 28.88 14.18 41.91 2.92
2464 4123 2.125229 CTGCAGCGGCTGTGATCT 60.125 61.111 28.88 0.00 41.91 2.75
2465 4124 2.125391 TGCAGCGGCTGTGATCTC 60.125 61.111 28.88 13.14 41.91 2.75
2466 4125 3.260483 GCAGCGGCTGTGATCTCG 61.260 66.667 28.88 3.61 36.96 4.04
2467 4126 2.182791 CAGCGGCTGTGATCTCGT 59.817 61.111 21.60 0.00 0.00 4.18
2468 4127 1.446792 CAGCGGCTGTGATCTCGTT 60.447 57.895 21.60 0.00 0.00 3.85
2477 4136 3.175152 CTGTGATCTCGTTTCTTCTCCG 58.825 50.000 0.00 0.00 0.00 4.63
2489 4148 5.220989 CGTTTCTTCTCCGGATGACATACTA 60.221 44.000 3.57 0.00 0.00 1.82
2490 4149 6.210078 GTTTCTTCTCCGGATGACATACTAG 58.790 44.000 3.57 0.00 0.00 2.57
2552 4212 3.125316 TCTTATATGTAACCGCAACGCC 58.875 45.455 0.00 0.00 0.00 5.68
2580 4240 3.806521 CCCTCGTCTTGATGAATGATGTC 59.193 47.826 0.00 0.00 0.00 3.06
2584 4244 6.413018 TCGTCTTGATGAATGATGTCTTTG 57.587 37.500 0.00 0.00 0.00 2.77
2589 4249 3.752747 TGATGAATGATGTCTTTGCACGT 59.247 39.130 0.00 0.00 0.00 4.49
2598 4258 3.238441 TGTCTTTGCACGTGTTGTTTTC 58.762 40.909 18.38 0.00 0.00 2.29
2607 4268 1.676006 CGTGTTGTTTTCAGCCTCCTT 59.324 47.619 0.00 0.00 0.00 3.36
2621 4283 3.026694 GCCTCCTTATGTTGATGGCTTT 58.973 45.455 0.00 0.00 36.32 3.51
2675 4337 5.053145 GGTTGTGCTTGATCACTCCTATAG 58.947 45.833 0.00 0.00 37.81 1.31
2676 4338 4.327982 TGTGCTTGATCACTCCTATAGC 57.672 45.455 6.39 6.39 37.81 2.97
2697 4359 3.866651 CTCGGATCAGTTTTGTCCAGAT 58.133 45.455 0.00 0.00 32.23 2.90
2698 4360 3.599343 TCGGATCAGTTTTGTCCAGATG 58.401 45.455 0.00 0.00 32.23 2.90
2699 4361 3.260632 TCGGATCAGTTTTGTCCAGATGA 59.739 43.478 0.00 0.00 32.23 2.92
2736 4399 6.293462 GGCACCTCCATCGTAATATTTTCTTC 60.293 42.308 0.00 0.00 34.01 2.87
2767 4430 3.127895 CGTAAGAGCAACTCTAGCAGACT 59.872 47.826 0.00 0.00 40.28 3.24
2769 4432 3.085952 AGAGCAACTCTAGCAGACTCT 57.914 47.619 0.00 0.00 39.28 3.24
2822 4485 0.171455 TCACGCAAAAACGCCTTTGT 59.829 45.000 10.48 0.00 38.35 2.83
2853 4516 3.052082 CGGGCCACAGTTGCAGAG 61.052 66.667 4.39 0.00 0.00 3.35
2856 4519 2.282040 GCCACAGTTGCAGAGCCT 60.282 61.111 0.00 0.00 0.00 4.58
2874 4694 4.284178 AGCCTGCATAATGGAAAGACATT 58.716 39.130 0.00 0.00 43.13 2.71
2962 4782 6.894103 AGATTTCCAATTTCCATAACTGCTCT 59.106 34.615 0.00 0.00 0.00 4.09
2981 4801 6.711277 TGCTCTCACAAGTTGGACTAATATT 58.289 36.000 7.96 0.00 0.00 1.28
2986 4806 9.793259 TCTCACAAGTTGGACTAATATTTTCTT 57.207 29.630 7.96 0.00 0.00 2.52
3046 4866 7.514784 TGCATTCTTCTTTCTTCATCTTTGA 57.485 32.000 0.00 0.00 0.00 2.69
3119 4943 5.972935 TCATTGCCTTCGATTGTACTAAGA 58.027 37.500 0.00 0.00 0.00 2.10
3217 5042 6.288941 TCCATCGTCCTACACAAAAGAATA 57.711 37.500 0.00 0.00 0.00 1.75
3254 5079 5.960105 GTGAGCTATCGCAATTGAACTAAAC 59.040 40.000 10.34 0.00 39.10 2.01
3326 5151 2.940994 TTTGAAGAACACCCATCCGA 57.059 45.000 0.00 0.00 0.00 4.55
3411 5236 1.006337 GCATCGGCAAGCCACAAAA 60.006 52.632 12.19 0.00 40.72 2.44
3455 5280 0.611062 TGGACGGTCAGACGAATCCT 60.611 55.000 10.76 0.00 37.61 3.24
3472 5297 2.203224 TTGCCCGCAAACCTTCGA 60.203 55.556 0.00 0.00 32.44 3.71
3481 5306 3.509137 AAACCTTCGACGGCAGCGA 62.509 57.895 8.05 0.03 35.76 4.93
3571 5396 2.043652 ATCGCTTGGGGCAGCAAT 60.044 55.556 0.00 0.00 40.09 3.56
3600 5425 1.538075 GGAAAAAGCCAAATCCGACGA 59.462 47.619 0.00 0.00 0.00 4.20
3601 5426 2.163613 GGAAAAAGCCAAATCCGACGAT 59.836 45.455 0.00 0.00 0.00 3.73
3603 5428 2.403252 AAAGCCAAATCCGACGATCT 57.597 45.000 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.072088 GTCTGGTTTGACGCGGCG 62.072 66.667 22.36 22.36 0.00 6.46
28 29 1.852067 ATTGTCTGGTTTGACGCGGC 61.852 55.000 12.47 8.67 39.64 6.53
29 30 0.110238 CATTGTCTGGTTTGACGCGG 60.110 55.000 12.47 0.00 39.64 6.46
30 31 0.725784 GCATTGTCTGGTTTGACGCG 60.726 55.000 3.53 3.53 39.64 6.01
31 32 0.725784 CGCATTGTCTGGTTTGACGC 60.726 55.000 0.00 0.00 39.64 5.19
32 33 0.725784 GCGCATTGTCTGGTTTGACG 60.726 55.000 0.30 0.00 39.64 4.35
33 34 0.725784 CGCGCATTGTCTGGTTTGAC 60.726 55.000 8.75 0.00 37.47 3.18
34 35 1.573932 CGCGCATTGTCTGGTTTGA 59.426 52.632 8.75 0.00 0.00 2.69
35 36 2.082366 GCGCGCATTGTCTGGTTTG 61.082 57.895 29.10 0.00 0.00 2.93
36 37 2.255252 GCGCGCATTGTCTGGTTT 59.745 55.556 29.10 0.00 0.00 3.27
37 38 4.088762 CGCGCGCATTGTCTGGTT 62.089 61.111 32.61 0.00 0.00 3.67
50 51 3.733190 AAACACATATGCCGCGCGC 62.733 57.895 27.36 23.91 38.31 6.86
51 52 0.796491 AAAAACACATATGCCGCGCG 60.796 50.000 25.67 25.67 0.00 6.86
52 53 3.028760 AAAAACACATATGCCGCGC 57.971 47.368 0.00 0.00 0.00 6.86
81 82 3.887868 CCAATAGGCGCCGGTTGC 61.888 66.667 29.81 11.81 0.00 4.17
82 83 2.124901 TCCAATAGGCGCCGGTTG 60.125 61.111 28.85 28.85 33.74 3.77
83 84 1.696097 ATCTCCAATAGGCGCCGGTT 61.696 55.000 23.20 17.23 33.74 4.44
84 85 2.140792 ATCTCCAATAGGCGCCGGT 61.141 57.895 23.20 11.27 33.74 5.28
85 86 1.669115 CATCTCCAATAGGCGCCGG 60.669 63.158 23.20 16.80 33.74 6.13
86 87 2.320587 GCATCTCCAATAGGCGCCG 61.321 63.158 23.20 6.32 33.74 6.46
87 88 0.952984 GAGCATCTCCAATAGGCGCC 60.953 60.000 21.89 21.89 33.74 6.53
88 89 2.537863 GAGCATCTCCAATAGGCGC 58.462 57.895 0.00 0.00 33.74 6.53
100 101 9.333750 AACTTGGAGTTGTTGCTTTAGAGCATC 62.334 40.741 9.01 8.96 46.61 3.91
101 102 7.638476 AACTTGGAGTTGTTGCTTTAGAGCAT 61.638 38.462 9.01 0.00 46.61 3.79
102 103 6.381815 AACTTGGAGTTGTTGCTTTAGAGCA 61.382 40.000 3.36 3.36 46.16 4.26
103 104 4.036852 AACTTGGAGTTGTTGCTTTAGAGC 59.963 41.667 0.00 0.00 42.24 4.09
104 105 5.757850 AACTTGGAGTTGTTGCTTTAGAG 57.242 39.130 0.00 0.00 37.00 2.43
105 106 7.934665 TGTATAACTTGGAGTTGTTGCTTTAGA 59.065 33.333 3.70 0.00 39.11 2.10
106 107 8.094798 TGTATAACTTGGAGTTGTTGCTTTAG 57.905 34.615 3.70 0.00 39.11 1.85
107 108 7.308348 GCTGTATAACTTGGAGTTGTTGCTTTA 60.308 37.037 3.70 0.00 39.11 1.85
108 109 6.515035 GCTGTATAACTTGGAGTTGTTGCTTT 60.515 38.462 3.70 0.00 39.11 3.51
109 110 5.048713 GCTGTATAACTTGGAGTTGTTGCTT 60.049 40.000 3.70 0.00 39.11 3.91
110 111 4.455877 GCTGTATAACTTGGAGTTGTTGCT 59.544 41.667 3.70 0.00 39.11 3.91
111 112 4.669197 CGCTGTATAACTTGGAGTTGTTGC 60.669 45.833 3.70 2.95 39.11 4.17
112 113 4.142902 CCGCTGTATAACTTGGAGTTGTTG 60.143 45.833 3.70 0.00 39.11 3.33
113 114 4.000988 CCGCTGTATAACTTGGAGTTGTT 58.999 43.478 3.70 0.00 39.11 2.83
114 115 3.259876 TCCGCTGTATAACTTGGAGTTGT 59.740 43.478 3.70 0.00 39.11 3.32
115 116 3.857052 TCCGCTGTATAACTTGGAGTTG 58.143 45.455 3.70 0.00 39.11 3.16
116 117 4.251268 GTTCCGCTGTATAACTTGGAGTT 58.749 43.478 0.00 0.00 41.97 3.01
117 118 3.675228 CGTTCCGCTGTATAACTTGGAGT 60.675 47.826 0.00 0.00 0.00 3.85
118 119 2.858344 CGTTCCGCTGTATAACTTGGAG 59.142 50.000 0.00 0.00 0.00 3.86
119 120 2.492881 TCGTTCCGCTGTATAACTTGGA 59.507 45.455 0.00 0.00 0.00 3.53
120 121 2.883574 TCGTTCCGCTGTATAACTTGG 58.116 47.619 0.00 0.00 0.00 3.61
121 122 5.038683 TGTATCGTTCCGCTGTATAACTTG 58.961 41.667 0.00 0.00 0.00 3.16
122 123 5.252969 TGTATCGTTCCGCTGTATAACTT 57.747 39.130 0.00 0.00 0.00 2.66
123 124 4.906065 TGTATCGTTCCGCTGTATAACT 57.094 40.909 0.00 0.00 0.00 2.24
124 125 5.461078 ACATTGTATCGTTCCGCTGTATAAC 59.539 40.000 0.00 0.00 0.00 1.89
125 126 5.460748 CACATTGTATCGTTCCGCTGTATAA 59.539 40.000 0.00 0.00 0.00 0.98
126 127 4.979815 CACATTGTATCGTTCCGCTGTATA 59.020 41.667 0.00 0.00 0.00 1.47
127 128 3.802139 CACATTGTATCGTTCCGCTGTAT 59.198 43.478 0.00 0.00 0.00 2.29
128 129 3.119424 TCACATTGTATCGTTCCGCTGTA 60.119 43.478 0.00 0.00 0.00 2.74
129 130 1.999735 CACATTGTATCGTTCCGCTGT 59.000 47.619 0.00 0.00 0.00 4.40
130 131 2.267426 TCACATTGTATCGTTCCGCTG 58.733 47.619 0.00 0.00 0.00 5.18
131 132 2.665649 TCACATTGTATCGTTCCGCT 57.334 45.000 0.00 0.00 0.00 5.52
132 133 2.863740 TCATCACATTGTATCGTTCCGC 59.136 45.455 0.00 0.00 0.00 5.54
133 134 4.359706 TCTCATCACATTGTATCGTTCCG 58.640 43.478 0.00 0.00 0.00 4.30
134 135 6.090088 GCTATCTCATCACATTGTATCGTTCC 59.910 42.308 0.00 0.00 0.00 3.62
135 136 6.090088 GGCTATCTCATCACATTGTATCGTTC 59.910 42.308 0.00 0.00 0.00 3.95
136 137 5.928839 GGCTATCTCATCACATTGTATCGTT 59.071 40.000 0.00 0.00 0.00 3.85
137 138 5.473931 GGCTATCTCATCACATTGTATCGT 58.526 41.667 0.00 0.00 0.00 3.73
138 139 4.867047 GGGCTATCTCATCACATTGTATCG 59.133 45.833 0.00 0.00 0.00 2.92
139 140 6.047511 AGGGCTATCTCATCACATTGTATC 57.952 41.667 0.00 0.00 0.00 2.24
140 141 5.784390 AGAGGGCTATCTCATCACATTGTAT 59.216 40.000 0.00 0.00 36.30 2.29
141 142 5.011431 CAGAGGGCTATCTCATCACATTGTA 59.989 44.000 0.00 0.00 36.30 2.41
142 143 3.972638 AGAGGGCTATCTCATCACATTGT 59.027 43.478 0.00 0.00 36.30 2.71
143 144 4.040095 TCAGAGGGCTATCTCATCACATTG 59.960 45.833 0.00 0.00 36.30 2.82
144 145 4.040217 GTCAGAGGGCTATCTCATCACATT 59.960 45.833 0.00 0.00 36.30 2.71
145 146 3.577848 GTCAGAGGGCTATCTCATCACAT 59.422 47.826 0.00 0.00 36.30 3.21
146 147 2.961741 GTCAGAGGGCTATCTCATCACA 59.038 50.000 0.00 0.00 36.30 3.58
147 148 2.961741 TGTCAGAGGGCTATCTCATCAC 59.038 50.000 0.00 0.00 36.30 3.06
148 149 2.961741 GTGTCAGAGGGCTATCTCATCA 59.038 50.000 0.00 0.00 36.30 3.07
149 150 2.961741 TGTGTCAGAGGGCTATCTCATC 59.038 50.000 0.00 0.00 36.30 2.92
150 151 2.964464 CTGTGTCAGAGGGCTATCTCAT 59.036 50.000 0.00 0.00 36.30 2.90
151 152 2.382882 CTGTGTCAGAGGGCTATCTCA 58.617 52.381 0.00 0.00 36.30 3.27
152 153 1.068434 GCTGTGTCAGAGGGCTATCTC 59.932 57.143 0.00 0.00 32.44 2.75
153 154 1.118838 GCTGTGTCAGAGGGCTATCT 58.881 55.000 0.00 0.00 32.44 1.98
154 155 0.826715 TGCTGTGTCAGAGGGCTATC 59.173 55.000 0.00 0.00 32.44 2.08
155 156 0.829333 CTGCTGTGTCAGAGGGCTAT 59.171 55.000 0.00 0.00 36.19 2.97
156 157 0.251787 TCTGCTGTGTCAGAGGGCTA 60.252 55.000 0.00 0.00 38.11 3.93
157 158 1.534959 TCTGCTGTGTCAGAGGGCT 60.535 57.895 0.00 0.00 38.11 5.19
158 159 1.375268 GTCTGCTGTGTCAGAGGGC 60.375 63.158 0.00 0.00 43.10 5.19
159 160 1.294780 GGTCTGCTGTGTCAGAGGG 59.705 63.158 0.00 0.00 43.10 4.30
160 161 1.190833 AGGGTCTGCTGTGTCAGAGG 61.191 60.000 0.00 0.00 43.10 3.69
161 162 0.037512 CAGGGTCTGCTGTGTCAGAG 60.038 60.000 0.66 0.00 43.10 3.35
162 163 0.469892 TCAGGGTCTGCTGTGTCAGA 60.470 55.000 0.66 0.00 40.50 3.27
163 164 0.394192 TTCAGGGTCTGCTGTGTCAG 59.606 55.000 0.00 0.00 35.46 3.51
164 165 0.836606 TTTCAGGGTCTGCTGTGTCA 59.163 50.000 0.00 0.00 0.00 3.58
165 166 1.808945 CATTTCAGGGTCTGCTGTGTC 59.191 52.381 0.00 0.00 0.00 3.67
166 167 1.421268 TCATTTCAGGGTCTGCTGTGT 59.579 47.619 0.00 0.00 0.00 3.72
167 168 2.189594 TCATTTCAGGGTCTGCTGTG 57.810 50.000 0.00 0.00 0.00 3.66
168 169 3.118112 CCTATCATTTCAGGGTCTGCTGT 60.118 47.826 0.00 0.00 0.00 4.40
169 170 3.474600 CCTATCATTTCAGGGTCTGCTG 58.525 50.000 0.00 0.00 0.00 4.41
170 171 2.158696 GCCTATCATTTCAGGGTCTGCT 60.159 50.000 0.00 0.00 32.15 4.24
171 172 2.225467 GCCTATCATTTCAGGGTCTGC 58.775 52.381 0.00 0.00 32.15 4.26
172 173 2.173356 TGGCCTATCATTTCAGGGTCTG 59.827 50.000 3.32 0.00 32.15 3.51
173 174 2.492025 TGGCCTATCATTTCAGGGTCT 58.508 47.619 3.32 0.00 32.15 3.85
174 175 2.952310 GTTGGCCTATCATTTCAGGGTC 59.048 50.000 3.32 0.00 32.15 4.46
175 176 2.311542 TGTTGGCCTATCATTTCAGGGT 59.688 45.455 3.32 0.00 32.15 4.34
176 177 3.017048 TGTTGGCCTATCATTTCAGGG 57.983 47.619 3.32 0.00 32.15 4.45
177 178 5.010012 GGTTATGTTGGCCTATCATTTCAGG 59.990 44.000 3.32 0.00 34.85 3.86
178 179 5.593909 TGGTTATGTTGGCCTATCATTTCAG 59.406 40.000 3.32 0.00 0.00 3.02
179 180 5.514169 TGGTTATGTTGGCCTATCATTTCA 58.486 37.500 3.32 3.34 0.00 2.69
180 181 6.655078 ATGGTTATGTTGGCCTATCATTTC 57.345 37.500 3.32 3.33 0.00 2.17
181 182 7.949565 TCATATGGTTATGTTGGCCTATCATTT 59.050 33.333 3.32 0.00 37.16 2.32
182 183 7.394359 GTCATATGGTTATGTTGGCCTATCATT 59.606 37.037 3.32 0.00 37.16 2.57
183 184 6.886459 GTCATATGGTTATGTTGGCCTATCAT 59.114 38.462 3.32 8.62 37.16 2.45
184 185 6.044287 AGTCATATGGTTATGTTGGCCTATCA 59.956 38.462 3.32 0.33 37.16 2.15
185 186 6.476378 AGTCATATGGTTATGTTGGCCTATC 58.524 40.000 3.32 0.00 37.16 2.08
186 187 6.454223 AGTCATATGGTTATGTTGGCCTAT 57.546 37.500 3.32 0.00 37.16 2.57
187 188 5.904984 AGTCATATGGTTATGTTGGCCTA 57.095 39.130 3.32 0.00 37.16 3.93
188 189 4.796110 AGTCATATGGTTATGTTGGCCT 57.204 40.909 3.32 0.00 37.16 5.19
189 190 4.451096 CGTAGTCATATGGTTATGTTGGCC 59.549 45.833 2.13 0.00 37.16 5.36
190 191 5.050363 CACGTAGTCATATGGTTATGTTGGC 60.050 44.000 2.13 0.00 41.61 4.52
191 192 5.465390 CCACGTAGTCATATGGTTATGTTGG 59.535 44.000 2.13 7.84 41.61 3.77
192 193 5.050363 GCCACGTAGTCATATGGTTATGTTG 60.050 44.000 2.13 5.06 41.61 3.33
193 194 5.054477 GCCACGTAGTCATATGGTTATGTT 58.946 41.667 2.13 0.00 41.61 2.71
194 195 4.502604 GGCCACGTAGTCATATGGTTATGT 60.503 45.833 0.00 4.90 41.61 2.29
195 196 3.994392 GGCCACGTAGTCATATGGTTATG 59.006 47.826 0.00 4.31 41.61 1.90
196 197 3.305813 CGGCCACGTAGTCATATGGTTAT 60.306 47.826 2.24 0.00 41.61 1.89
197 198 2.034939 CGGCCACGTAGTCATATGGTTA 59.965 50.000 2.24 0.00 41.61 2.85
198 199 1.202486 CGGCCACGTAGTCATATGGTT 60.202 52.381 2.24 0.00 41.61 3.67
199 200 0.387929 CGGCCACGTAGTCATATGGT 59.612 55.000 2.24 0.00 41.61 3.55
200 201 0.671796 TCGGCCACGTAGTCATATGG 59.328 55.000 2.24 0.00 41.61 2.74
201 202 2.124903 GTTCGGCCACGTAGTCATATG 58.875 52.381 2.24 0.00 41.61 1.78
202 203 1.752498 TGTTCGGCCACGTAGTCATAT 59.248 47.619 2.24 0.00 41.61 1.78
203 204 1.135315 GTGTTCGGCCACGTAGTCATA 60.135 52.381 2.24 0.00 41.61 2.15
204 205 0.389426 GTGTTCGGCCACGTAGTCAT 60.389 55.000 2.24 0.00 41.61 3.06
205 206 1.007038 GTGTTCGGCCACGTAGTCA 60.007 57.895 2.24 0.00 41.61 3.41
206 207 1.735559 GGTGTTCGGCCACGTAGTC 60.736 63.158 2.24 0.00 41.61 2.59
208 209 0.244450 TTAGGTGTTCGGCCACGTAG 59.756 55.000 2.24 0.00 41.85 3.51
209 210 0.244450 CTTAGGTGTTCGGCCACGTA 59.756 55.000 2.24 0.00 41.85 3.57
210 211 1.005394 CTTAGGTGTTCGGCCACGT 60.005 57.895 2.24 0.00 41.85 4.49
211 212 0.244450 TACTTAGGTGTTCGGCCACG 59.756 55.000 2.24 0.00 42.74 4.94
212 213 1.001181 TGTACTTAGGTGTTCGGCCAC 59.999 52.381 2.24 0.00 34.52 5.01
213 214 1.274167 CTGTACTTAGGTGTTCGGCCA 59.726 52.381 2.24 0.00 0.00 5.36
214 215 1.405121 CCTGTACTTAGGTGTTCGGCC 60.405 57.143 0.00 0.00 32.99 6.13
215 216 1.547372 TCCTGTACTTAGGTGTTCGGC 59.453 52.381 0.00 0.00 38.99 5.54
216 217 2.415090 CGTCCTGTACTTAGGTGTTCGG 60.415 54.545 0.00 0.00 38.99 4.30
217 218 2.485426 TCGTCCTGTACTTAGGTGTTCG 59.515 50.000 0.00 0.00 38.99 3.95
218 219 3.366781 GGTCGTCCTGTACTTAGGTGTTC 60.367 52.174 0.00 0.00 38.99 3.18
219 220 2.560105 GGTCGTCCTGTACTTAGGTGTT 59.440 50.000 0.00 0.00 38.99 3.32
220 221 2.165998 GGTCGTCCTGTACTTAGGTGT 58.834 52.381 0.00 0.00 38.99 4.16
221 222 2.163815 CTGGTCGTCCTGTACTTAGGTG 59.836 54.545 0.00 0.00 38.99 4.00
222 223 2.040813 TCTGGTCGTCCTGTACTTAGGT 59.959 50.000 0.00 0.00 38.99 3.08
223 224 2.719739 TCTGGTCGTCCTGTACTTAGG 58.280 52.381 0.00 0.00 39.29 2.69
224 225 4.985538 AATCTGGTCGTCCTGTACTTAG 57.014 45.455 0.00 0.00 34.80 2.18
225 226 5.255687 TGTAATCTGGTCGTCCTGTACTTA 58.744 41.667 0.00 0.00 34.80 2.24
226 227 4.084287 TGTAATCTGGTCGTCCTGTACTT 58.916 43.478 0.00 0.00 34.80 2.24
227 228 3.693807 TGTAATCTGGTCGTCCTGTACT 58.306 45.455 0.00 0.00 34.80 2.73
228 229 4.171754 GTTGTAATCTGGTCGTCCTGTAC 58.828 47.826 0.00 0.66 34.80 2.90
229 230 3.119743 CGTTGTAATCTGGTCGTCCTGTA 60.120 47.826 0.00 0.00 34.80 2.74
230 231 2.352421 CGTTGTAATCTGGTCGTCCTGT 60.352 50.000 0.00 0.00 34.80 4.00
231 232 2.259618 CGTTGTAATCTGGTCGTCCTG 58.740 52.381 0.00 0.00 34.23 3.86
232 233 1.403780 GCGTTGTAATCTGGTCGTCCT 60.404 52.381 0.00 0.00 34.23 3.85
233 234 0.997196 GCGTTGTAATCTGGTCGTCC 59.003 55.000 0.00 0.00 0.00 4.79
234 235 0.638746 CGCGTTGTAATCTGGTCGTC 59.361 55.000 0.00 0.00 0.00 4.20
235 236 0.038892 ACGCGTTGTAATCTGGTCGT 60.039 50.000 5.58 0.00 0.00 4.34
236 237 0.365523 CACGCGTTGTAATCTGGTCG 59.634 55.000 10.22 0.00 0.00 4.79
237 238 0.094730 GCACGCGTTGTAATCTGGTC 59.905 55.000 10.22 0.00 0.00 4.02
238 239 0.601576 TGCACGCGTTGTAATCTGGT 60.602 50.000 10.22 0.00 0.00 4.00
239 240 0.515127 TTGCACGCGTTGTAATCTGG 59.485 50.000 10.22 0.00 0.00 3.86
240 241 2.525750 ATTGCACGCGTTGTAATCTG 57.474 45.000 10.22 0.00 35.80 2.90
241 242 3.306166 GTCTATTGCACGCGTTGTAATCT 59.694 43.478 21.02 8.63 39.54 2.40
242 243 3.594312 GTCTATTGCACGCGTTGTAATC 58.406 45.455 21.02 9.55 39.54 1.75
243 244 2.028763 CGTCTATTGCACGCGTTGTAAT 59.971 45.455 10.22 17.95 42.58 1.89
244 245 1.387420 CGTCTATTGCACGCGTTGTAA 59.613 47.619 10.22 11.81 33.93 2.41
245 246 0.986270 CGTCTATTGCACGCGTTGTA 59.014 50.000 10.22 1.58 0.00 2.41
246 247 1.779061 CGTCTATTGCACGCGTTGT 59.221 52.632 10.22 0.00 0.00 3.32
247 248 4.624747 CGTCTATTGCACGCGTTG 57.375 55.556 10.22 6.68 0.00 4.10
324 325 4.407621 ACAAATTTTCGGAAAAAGAGGGGT 59.592 37.500 18.78 9.37 37.76 4.95
337 339 6.255453 ACATTCAAGTGAACCACAAATTTTCG 59.745 34.615 0.00 0.00 36.74 3.46
388 390 0.402504 TTATGCGGAAACCCCACTGT 59.597 50.000 0.00 0.00 34.14 3.55
396 398 7.328249 TCAGTTTTCAAATGATTATGCGGAAAC 59.672 33.333 0.00 0.00 0.00 2.78
442 444 1.392168 CAAAATGCTTGATGCGCCAAG 59.608 47.619 18.60 18.60 46.63 3.61
443 445 1.000618 TCAAAATGCTTGATGCGCCAA 59.999 42.857 4.18 1.18 46.63 4.52
448 450 4.399978 GCAATTGTCAAAATGCTTGATGC 58.600 39.130 15.70 0.00 38.85 3.91
470 472 2.279784 GCGCGGAGAGGAGAATGG 60.280 66.667 8.83 0.00 0.00 3.16
478 480 2.829003 TCAGGTAGGCGCGGAGAG 60.829 66.667 8.83 0.00 0.00 3.20
479 481 3.138798 GTCAGGTAGGCGCGGAGA 61.139 66.667 8.83 0.00 0.00 3.71
480 482 4.554363 CGTCAGGTAGGCGCGGAG 62.554 72.222 8.83 0.00 39.16 4.63
530 532 1.173913 GGTCTGAAAAATGGACGGGG 58.826 55.000 0.00 0.00 0.00 5.73
547 549 1.228956 ACATGGCACCTGCATTGGT 60.229 52.632 0.00 0.00 44.36 3.67
553 555 4.409218 CGCACACATGGCACCTGC 62.409 66.667 0.00 0.00 41.14 4.85
564 827 1.835121 TGCAGATACGATACGCACAC 58.165 50.000 0.00 0.00 0.00 3.82
569 832 1.409412 GGCAGTGCAGATACGATACG 58.591 55.000 18.61 0.00 0.00 3.06
570 833 1.068588 TGGGCAGTGCAGATACGATAC 59.931 52.381 18.61 0.00 0.00 2.24
571 834 1.068588 GTGGGCAGTGCAGATACGATA 59.931 52.381 18.61 0.00 0.00 2.92
572 835 0.179073 GTGGGCAGTGCAGATACGAT 60.179 55.000 18.61 0.00 0.00 3.73
573 836 1.218047 GTGGGCAGTGCAGATACGA 59.782 57.895 18.61 0.00 0.00 3.43
600 863 4.963276 TCACAAGTTTTCACCAGTTCTG 57.037 40.909 0.00 0.00 0.00 3.02
635 898 5.049267 TGAGGAATGGTAAGCGTGTTTTTAC 60.049 40.000 0.00 0.00 0.00 2.01
637 900 3.886505 TGAGGAATGGTAAGCGTGTTTTT 59.113 39.130 0.00 0.00 0.00 1.94
649 912 1.806496 TCCGATGGATGAGGAATGGT 58.194 50.000 0.00 0.00 0.00 3.55
682 1518 3.197983 ACCTAGTTCTGTACCTTGATGCC 59.802 47.826 0.00 0.00 0.00 4.40
767 1603 7.335627 TCACACCTAAACTTCTCTCAGAAAAA 58.664 34.615 0.00 0.00 33.19 1.94
768 1604 6.884832 TCACACCTAAACTTCTCTCAGAAAA 58.115 36.000 0.00 0.00 33.19 2.29
769 1605 6.479972 TCACACCTAAACTTCTCTCAGAAA 57.520 37.500 0.00 0.00 33.19 2.52
770 1606 6.672266 ATCACACCTAAACTTCTCTCAGAA 57.328 37.500 0.00 0.00 32.50 3.02
771 1607 6.672266 AATCACACCTAAACTTCTCTCAGA 57.328 37.500 0.00 0.00 0.00 3.27
772 1608 7.736447 AAAATCACACCTAAACTTCTCTCAG 57.264 36.000 0.00 0.00 0.00 3.35
844 1680 3.213506 TCACTTGTTCCATGGACTTGTG 58.786 45.455 15.91 19.40 0.00 3.33
845 1681 3.576078 TCACTTGTTCCATGGACTTGT 57.424 42.857 15.91 8.44 0.00 3.16
846 1682 4.136796 TCTTCACTTGTTCCATGGACTTG 58.863 43.478 15.91 7.77 0.00 3.16
854 1690 3.244215 CCAGCTACTCTTCACTTGTTCCA 60.244 47.826 0.00 0.00 0.00 3.53
856 1692 3.996480 ACCAGCTACTCTTCACTTGTTC 58.004 45.455 0.00 0.00 0.00 3.18
857 1693 4.101741 AGAACCAGCTACTCTTCACTTGTT 59.898 41.667 0.00 0.00 0.00 2.83
873 1709 4.153475 CGGTGTTTGGTATACAAGAACCAG 59.847 45.833 5.01 0.04 46.11 4.00
895 1731 4.624364 TGTGCCAGTCAGGTGCCG 62.624 66.667 0.00 0.00 40.61 5.69
961 1797 6.350629 TCCATGATCGATGCTATATATGGG 57.649 41.667 0.54 0.00 35.65 4.00
983 1819 5.163301 TGTTACTTGCTCTATTCCAGGGATC 60.163 44.000 0.00 0.00 0.00 3.36
1033 1886 8.623903 TGCAGATTATTGGTTTAAGCTTATGAG 58.376 33.333 7.08 0.00 0.00 2.90
1048 1901 7.187244 CACTTCCTATCTGTGCAGATTATTG 57.813 40.000 18.34 9.18 45.31 1.90
1064 1936 1.482593 GCTTCTAGCCTGCACTTCCTA 59.517 52.381 0.00 0.00 34.48 2.94
1071 1943 0.321919 CCTGTTGCTTCTAGCCTGCA 60.322 55.000 0.00 0.00 41.51 4.41
1072 1944 1.652167 GCCTGTTGCTTCTAGCCTGC 61.652 60.000 0.00 0.00 41.51 4.85
1073 1945 2.475666 GCCTGTTGCTTCTAGCCTG 58.524 57.895 0.00 0.00 41.51 4.85
1083 1955 3.797546 GCTCTCGCAGCCTGTTGC 61.798 66.667 0.00 0.00 43.17 4.17
1126 2004 3.118038 ACAAGTGTACCAGCTTGAAGGAA 60.118 43.478 21.07 0.00 43.29 3.36
1139 2017 1.264288 GGCTGTGAAGCACAAGTGTAC 59.736 52.381 1.64 0.00 44.08 2.90
1140 2018 1.593196 GGCTGTGAAGCACAAGTGTA 58.407 50.000 1.64 0.00 44.08 2.90
1141 2019 1.439353 CGGCTGTGAAGCACAAGTGT 61.439 55.000 1.64 0.00 44.08 3.55
1142 2020 1.280746 CGGCTGTGAAGCACAAGTG 59.719 57.895 1.64 0.00 44.08 3.16
1158 2036 2.941333 CAACACAGAGCAGCACGG 59.059 61.111 0.00 0.00 0.00 4.94
1159 2037 2.250485 GCAACACAGAGCAGCACG 59.750 61.111 0.00 0.00 0.00 5.34
1162 2040 0.888285 AGAAGGCAACACAGAGCAGC 60.888 55.000 0.00 0.00 41.41 5.25
1163 2041 1.155042 GAGAAGGCAACACAGAGCAG 58.845 55.000 0.00 0.00 41.41 4.24
1166 2044 1.071385 ACAGGAGAAGGCAACACAGAG 59.929 52.381 0.00 0.00 41.41 3.35
1170 2048 0.312102 GCAACAGGAGAAGGCAACAC 59.688 55.000 0.00 0.00 41.41 3.32
1173 2051 0.473755 TCTGCAACAGGAGAAGGCAA 59.526 50.000 0.00 0.00 33.58 4.52
1176 2054 0.689623 ACCTCTGCAACAGGAGAAGG 59.310 55.000 16.72 3.19 34.75 3.46
1198 2076 4.081917 AGCCAGAGTAGAGCTCAACTTTAC 60.082 45.833 17.77 9.17 46.47 2.01
1199 2077 4.081972 CAGCCAGAGTAGAGCTCAACTTTA 60.082 45.833 17.77 0.00 46.47 1.85
1200 2078 2.903135 AGCCAGAGTAGAGCTCAACTTT 59.097 45.455 17.77 0.00 46.47 2.66
1201 2079 2.233431 CAGCCAGAGTAGAGCTCAACTT 59.767 50.000 17.77 0.00 46.47 2.66
1206 2084 0.823460 AAGCAGCCAGAGTAGAGCTC 59.177 55.000 5.27 5.27 44.45 4.09
1213 2091 1.133976 ACAAAGTGAAGCAGCCAGAGT 60.134 47.619 0.00 0.00 0.00 3.24
1214 2092 1.534595 GACAAAGTGAAGCAGCCAGAG 59.465 52.381 0.00 0.00 0.00 3.35
1216 2094 1.266175 CAGACAAAGTGAAGCAGCCAG 59.734 52.381 0.00 0.00 0.00 4.85
1219 2097 2.355756 TGAACAGACAAAGTGAAGCAGC 59.644 45.455 0.00 0.00 0.00 5.25
1220 2098 4.274214 TCATGAACAGACAAAGTGAAGCAG 59.726 41.667 0.00 0.00 0.00 4.24
1222 2100 4.531332 GTCATGAACAGACAAAGTGAAGC 58.469 43.478 0.00 0.00 36.06 3.86
1223 2101 4.023707 GGGTCATGAACAGACAAAGTGAAG 60.024 45.833 13.90 0.00 37.74 3.02
1224 2102 3.882888 GGGTCATGAACAGACAAAGTGAA 59.117 43.478 13.90 0.00 37.74 3.18
1226 2104 2.224079 CGGGTCATGAACAGACAAAGTG 59.776 50.000 13.90 0.00 37.74 3.16
1227 2105 2.158813 ACGGGTCATGAACAGACAAAGT 60.159 45.455 18.23 0.26 37.74 2.66
1228 2106 2.494059 ACGGGTCATGAACAGACAAAG 58.506 47.619 18.23 0.00 37.74 2.77
1230 2108 2.289195 GGTACGGGTCATGAACAGACAA 60.289 50.000 18.23 0.00 37.74 3.18
1231 2109 1.274167 GGTACGGGTCATGAACAGACA 59.726 52.381 18.23 1.99 37.74 3.41
1232 2110 1.274167 TGGTACGGGTCATGAACAGAC 59.726 52.381 18.23 10.69 35.29 3.51
1233 2111 1.634960 TGGTACGGGTCATGAACAGA 58.365 50.000 18.23 0.00 0.00 3.41
1234 2112 2.279741 CATGGTACGGGTCATGAACAG 58.720 52.381 13.90 11.65 42.25 3.16
1235 2113 1.065782 CCATGGTACGGGTCATGAACA 60.066 52.381 13.90 0.00 42.25 3.18
1236 2114 1.065709 ACCATGGTACGGGTCATGAAC 60.066 52.381 18.10 0.73 42.25 3.18
1238 2116 1.281419 AACCATGGTACGGGTCATGA 58.719 50.000 20.12 0.00 42.25 3.07
1239 2117 2.122783 AAACCATGGTACGGGTCATG 57.877 50.000 20.12 3.47 37.65 3.07
1240 2118 2.841881 AGTAAACCATGGTACGGGTCAT 59.158 45.455 20.12 0.00 37.65 3.06
1241 2119 2.027929 CAGTAAACCATGGTACGGGTCA 60.028 50.000 20.12 0.00 37.65 4.02
1242 2120 2.027837 ACAGTAAACCATGGTACGGGTC 60.028 50.000 20.12 6.10 37.65 4.46
1243 2121 1.980036 ACAGTAAACCATGGTACGGGT 59.020 47.619 20.12 14.04 40.39 5.28
1244 2122 2.027929 TGACAGTAAACCATGGTACGGG 60.028 50.000 20.12 13.42 0.00 5.28
1245 2123 3.056393 TCTGACAGTAAACCATGGTACGG 60.056 47.826 20.12 16.56 0.00 4.02
1247 2125 4.694037 GGTTCTGACAGTAAACCATGGTAC 59.306 45.833 20.12 14.08 41.69 3.34
1249 2127 3.137544 TGGTTCTGACAGTAAACCATGGT 59.862 43.478 19.75 13.00 45.62 3.55
1250 2128 3.750371 TGGTTCTGACAGTAAACCATGG 58.250 45.455 19.75 11.19 45.62 3.66
1254 2132 2.830104 ACGTGGTTCTGACAGTAAACC 58.170 47.619 15.86 15.86 42.28 3.27
1255 2133 5.045872 AGTAACGTGGTTCTGACAGTAAAC 58.954 41.667 1.59 0.42 0.00 2.01
1256 2134 5.266733 AGTAACGTGGTTCTGACAGTAAA 57.733 39.130 1.59 0.00 0.00 2.01
1257 2135 4.924305 AGTAACGTGGTTCTGACAGTAA 57.076 40.909 1.59 0.00 0.00 2.24
1258 2136 6.432162 AGATTAGTAACGTGGTTCTGACAGTA 59.568 38.462 1.59 0.00 0.00 2.74
1259 2137 4.924305 TTAGTAACGTGGTTCTGACAGT 57.076 40.909 1.59 0.00 0.00 3.55
1260 2138 5.573282 CAGATTAGTAACGTGGTTCTGACAG 59.427 44.000 0.00 0.00 32.77 3.51
1261 2139 5.466819 CAGATTAGTAACGTGGTTCTGACA 58.533 41.667 3.75 0.00 32.77 3.58
1262 2140 4.863131 CCAGATTAGTAACGTGGTTCTGAC 59.137 45.833 9.51 0.00 32.77 3.51
1263 2141 4.525487 ACCAGATTAGTAACGTGGTTCTGA 59.475 41.667 10.88 0.00 38.39 3.27
1264 2142 4.817517 ACCAGATTAGTAACGTGGTTCTG 58.182 43.478 10.88 6.96 38.39 3.02
1265 2143 5.479124 AACCAGATTAGTAACGTGGTTCT 57.521 39.130 18.83 5.00 46.33 3.01
1268 2146 4.081807 GGAGAACCAGATTAGTAACGTGGT 60.082 45.833 10.88 10.88 43.54 4.16
1269 2147 4.159879 AGGAGAACCAGATTAGTAACGTGG 59.840 45.833 9.81 9.81 38.94 4.94
1270 2148 5.125739 AGAGGAGAACCAGATTAGTAACGTG 59.874 44.000 0.00 0.00 38.94 4.49
1271 2149 5.125739 CAGAGGAGAACCAGATTAGTAACGT 59.874 44.000 0.00 0.00 38.94 3.99
1272 2150 5.450688 CCAGAGGAGAACCAGATTAGTAACG 60.451 48.000 0.00 0.00 38.94 3.18
1273 2151 5.422650 ACCAGAGGAGAACCAGATTAGTAAC 59.577 44.000 0.00 0.00 38.94 2.50
1274 2152 5.590818 ACCAGAGGAGAACCAGATTAGTAA 58.409 41.667 0.00 0.00 38.94 2.24
1275 2153 5.208294 ACCAGAGGAGAACCAGATTAGTA 57.792 43.478 0.00 0.00 38.94 1.82
1276 2154 4.067944 ACCAGAGGAGAACCAGATTAGT 57.932 45.455 0.00 0.00 38.94 2.24
1283 2161 2.507886 TGTTGAAACCAGAGGAGAACCA 59.492 45.455 0.00 0.00 38.94 3.67
1285 2163 4.557496 GCATTGTTGAAACCAGAGGAGAAC 60.557 45.833 0.00 0.00 0.00 3.01
1288 2166 2.886523 TGCATTGTTGAAACCAGAGGAG 59.113 45.455 0.00 0.00 0.00 3.69
1291 2169 2.029649 CCCTGCATTGTTGAAACCAGAG 60.030 50.000 0.00 0.00 0.00 3.35
1293 2171 1.606224 GCCCTGCATTGTTGAAACCAG 60.606 52.381 0.00 0.00 0.00 4.00
1295 2173 0.392336 TGCCCTGCATTGTTGAAACC 59.608 50.000 0.00 0.00 31.71 3.27
1298 2176 1.186917 CCCTGCCCTGCATTGTTGAA 61.187 55.000 0.00 0.00 38.13 2.69
1335 2213 3.847602 CTCCTGCTCCTGCTCCGG 61.848 72.222 0.00 0.00 40.48 5.14
1336 2214 4.527583 GCTCCTGCTCCTGCTCCG 62.528 72.222 0.00 0.00 40.48 4.63
1337 2215 3.388703 CTGCTCCTGCTCCTGCTCC 62.389 68.421 0.00 0.00 40.48 4.70
1338 2216 2.187424 CTGCTCCTGCTCCTGCTC 59.813 66.667 0.00 0.00 40.48 4.26
1339 2217 3.400928 CCTGCTCCTGCTCCTGCT 61.401 66.667 0.00 0.00 40.48 4.24
1381 2268 1.432251 CGTCCCTGGTACTACTGCG 59.568 63.158 0.00 0.00 0.00 5.18
1463 2351 0.528470 AGTAAGTGCAGACGAGAGGC 59.472 55.000 0.00 0.00 42.06 4.70
1464 2352 1.202087 CGAGTAAGTGCAGACGAGAGG 60.202 57.143 0.00 0.00 0.00 3.69
1480 2368 0.324368 TGATGCCCCTGACTACGAGT 60.324 55.000 0.00 0.00 0.00 4.18
1481 2369 0.387202 CTGATGCCCCTGACTACGAG 59.613 60.000 0.00 0.00 0.00 4.18
1482 2370 1.676678 GCTGATGCCCCTGACTACGA 61.677 60.000 0.00 0.00 0.00 3.43
1483 2371 1.227380 GCTGATGCCCCTGACTACG 60.227 63.158 0.00 0.00 0.00 3.51
1484 2372 1.227380 CGCTGATGCCCCTGACTAC 60.227 63.158 0.00 0.00 35.36 2.73
1485 2373 2.434843 CCGCTGATGCCCCTGACTA 61.435 63.158 0.00 0.00 35.36 2.59
1486 2374 3.790437 CCGCTGATGCCCCTGACT 61.790 66.667 0.00 0.00 35.36 3.41
1506 2398 4.180817 GCAACATTTGTTACCCATTAGCC 58.819 43.478 0.00 0.00 36.32 3.93
1514 2406 2.126914 TGCACGCAACATTTGTTACC 57.873 45.000 0.00 0.00 36.32 2.85
1515 2407 2.408032 CCATGCACGCAACATTTGTTAC 59.592 45.455 0.00 0.00 36.32 2.50
1518 2410 0.945265 GCCATGCACGCAACATTTGT 60.945 50.000 0.00 0.00 0.00 2.83
1523 2415 3.672447 CCTGCCATGCACGCAACA 61.672 61.111 11.16 0.00 35.40 3.33
1524 2416 3.673484 ACCTGCCATGCACGCAAC 61.673 61.111 11.16 0.00 35.40 4.17
1804 2696 2.690881 TCCCATTCCACCTCCGGG 60.691 66.667 0.00 0.00 38.34 5.73
1809 2701 3.411517 CCGCCTCCCATTCCACCT 61.412 66.667 0.00 0.00 0.00 4.00
1856 2796 4.856801 CTCCCATTCCACCGCCGG 62.857 72.222 0.00 0.00 0.00 6.13
1857 2797 4.856801 CCTCCCATTCCACCGCCG 62.857 72.222 0.00 0.00 0.00 6.46
1860 2800 4.856801 CCGCCTCCCATTCCACCG 62.857 72.222 0.00 0.00 0.00 4.94
1861 2801 4.506255 CCCGCCTCCCATTCCACC 62.506 72.222 0.00 0.00 0.00 4.61
1883 2823 3.118454 CACCGCCAGCGTTACCAG 61.118 66.667 11.55 0.00 37.81 4.00
1897 2837 3.580319 AACTCCCCCACTGGCACC 61.580 66.667 0.00 0.00 0.00 5.01
2010 2980 1.410737 CGCCGATGGTGTTCGTAGTG 61.411 60.000 0.00 0.00 37.42 2.74
2118 3094 4.465512 GTGATGTTGCCGCTGCCG 62.466 66.667 0.00 0.00 36.33 5.69
2162 3818 0.180406 CTCCGGGGATTAGGTGTTGG 59.820 60.000 0.00 0.00 0.00 3.77
2163 3819 0.463833 GCTCCGGGGATTAGGTGTTG 60.464 60.000 4.80 0.00 0.00 3.33
2177 3833 4.990426 AGGAAATGTTGAAATTTTGCTCCG 59.010 37.500 0.00 0.00 29.89 4.63
2202 3858 4.609559 CGTTCCAATAGTCTCTCGATCTCG 60.610 50.000 0.00 0.00 41.45 4.04
2216 3872 0.515127 CGTGTTGCAGCGTTCCAATA 59.485 50.000 0.00 0.00 0.00 1.90
2225 3881 2.764251 ATTTCGTCGCGTGTTGCAGC 62.764 55.000 5.77 0.00 46.97 5.25
2234 3890 3.789756 ACTACACTGAATATTTCGTCGCG 59.210 43.478 0.00 0.00 0.00 5.87
2245 3901 6.855914 CACGCAAAAATGTTACTACACTGAAT 59.144 34.615 0.00 0.00 37.03 2.57
2254 3910 3.312973 TCCGTTCACGCAAAAATGTTACT 59.687 39.130 0.00 0.00 38.18 2.24
2414 4073 2.600731 CGTTGCTGTCAGACCTAGAAG 58.399 52.381 3.32 0.00 0.00 2.85
2423 4082 3.767230 CGTCGCCGTTGCTGTCAG 61.767 66.667 0.00 0.00 34.43 3.51
2447 4106 2.125229 AGATCACAGCCGCTGCAG 60.125 61.111 20.56 10.11 41.13 4.41
2456 4115 3.175152 CGGAGAAGAAACGAGATCACAG 58.825 50.000 0.00 0.00 0.00 3.66
2458 4117 2.163815 TCCGGAGAAGAAACGAGATCAC 59.836 50.000 0.00 0.00 0.00 3.06
2459 4118 2.443416 TCCGGAGAAGAAACGAGATCA 58.557 47.619 0.00 0.00 0.00 2.92
2460 4119 3.066900 TCATCCGGAGAAGAAACGAGATC 59.933 47.826 11.34 0.00 0.00 2.75
2461 4120 3.024547 TCATCCGGAGAAGAAACGAGAT 58.975 45.455 11.34 0.00 0.00 2.75
2462 4121 2.163815 GTCATCCGGAGAAGAAACGAGA 59.836 50.000 11.34 0.00 0.00 4.04
2463 4122 2.094700 TGTCATCCGGAGAAGAAACGAG 60.095 50.000 11.34 0.00 0.00 4.18
2464 4123 1.890489 TGTCATCCGGAGAAGAAACGA 59.110 47.619 11.34 0.00 0.00 3.85
2465 4124 2.363788 TGTCATCCGGAGAAGAAACG 57.636 50.000 11.34 0.00 0.00 3.60
2466 4125 5.012328 AGTATGTCATCCGGAGAAGAAAC 57.988 43.478 11.34 4.44 0.00 2.78
2467 4126 6.127101 TCTAGTATGTCATCCGGAGAAGAAA 58.873 40.000 11.34 3.26 0.00 2.52
2468 4127 5.691896 TCTAGTATGTCATCCGGAGAAGAA 58.308 41.667 11.34 0.00 0.00 2.52
2477 4136 8.723942 AAAATCAACACTCTAGTATGTCATCC 57.276 34.615 2.73 0.00 0.00 3.51
2519 4179 7.398024 GGTTACATATAAGATCATCCAGCCTT 58.602 38.462 0.00 0.00 0.00 4.35
2552 4212 3.808466 TCATCAAGACGAGGGAATCAG 57.192 47.619 0.00 0.00 0.00 2.90
2580 4240 2.027926 GCTGAAAACAACACGTGCAAAG 59.972 45.455 17.22 5.50 0.00 2.77
2584 4244 0.100503 AGGCTGAAAACAACACGTGC 59.899 50.000 17.22 0.00 0.00 5.34
2589 4249 4.469657 ACATAAGGAGGCTGAAAACAACA 58.530 39.130 0.00 0.00 0.00 3.33
2598 4258 1.952296 GCCATCAACATAAGGAGGCTG 59.048 52.381 0.00 0.00 37.67 4.85
2633 4295 5.071653 ACAACCAGGCCAATAACATCTTTTT 59.928 36.000 5.01 0.00 0.00 1.94
2638 4300 2.417243 GCACAACCAGGCCAATAACATC 60.417 50.000 5.01 0.00 0.00 3.06
2644 4306 0.469705 TCAAGCACAACCAGGCCAAT 60.470 50.000 5.01 0.00 0.00 3.16
2645 4307 0.469705 ATCAAGCACAACCAGGCCAA 60.470 50.000 5.01 0.00 0.00 4.52
2675 4337 1.734465 CTGGACAAAACTGATCCGAGC 59.266 52.381 0.00 0.00 35.06 5.03
2676 4338 3.319137 TCTGGACAAAACTGATCCGAG 57.681 47.619 0.00 0.00 35.06 4.63
2697 4359 1.074775 GTGCCACCCAGTTGGATCA 59.925 57.895 0.00 0.00 39.24 2.92
2698 4360 1.678970 GGTGCCACCCAGTTGGATC 60.679 63.158 1.17 0.00 39.24 3.36
2699 4361 2.142292 GAGGTGCCACCCAGTTGGAT 62.142 60.000 11.06 0.00 39.75 3.41
2736 4399 5.826586 AGAGTTGCTCTTACGAGTATCATG 58.173 41.667 0.00 0.00 37.60 3.07
2745 4408 3.127895 AGTCTGCTAGAGTTGCTCTTACG 59.872 47.826 3.87 0.00 41.50 3.18
2804 4467 0.297230 CACAAAGGCGTTTTTGCGTG 59.703 50.000 0.70 3.87 40.80 5.34
2805 4468 0.804156 CCACAAAGGCGTTTTTGCGT 60.804 50.000 11.56 0.41 40.80 5.24
2839 4502 2.282040 AGGCTCTGCAACTGTGGC 60.282 61.111 0.00 0.00 0.00 5.01
2853 4516 4.660789 AATGTCTTTCCATTATGCAGGC 57.339 40.909 0.00 0.00 33.37 4.85
2856 4519 7.473735 TTTGGTAATGTCTTTCCATTATGCA 57.526 32.000 0.00 0.00 38.98 3.96
2947 4767 4.973168 ACTTGTGAGAGCAGTTATGGAAA 58.027 39.130 0.00 0.00 0.00 3.13
2962 4782 9.567776 TGAAGAAAATATTAGTCCAACTTGTGA 57.432 29.630 0.00 0.00 0.00 3.58
2981 4801 7.544217 CAGATCAACAATGAATGCATGAAGAAA 59.456 33.333 0.00 0.00 39.49 2.52
2986 4806 4.678622 GCAGATCAACAATGAATGCATGA 58.321 39.130 0.00 0.00 45.03 3.07
3046 4866 4.557205 AGCAACGTCTACTTCTTTCGAAT 58.443 39.130 0.00 0.00 0.00 3.34
3119 4943 9.726438 AGAAACTTAATAGATGTTAGTGCACTT 57.274 29.630 27.06 6.57 0.00 3.16
3238 5063 5.048782 AGCTCATTGTTTAGTTCAATTGCGA 60.049 36.000 0.00 0.00 37.31 5.10
3254 5079 5.107182 CGGTAGCTCATTTCATAGCTCATTG 60.107 44.000 0.00 0.00 45.92 2.82
3411 5236 4.134187 CGACGCTCGCGCAACATT 62.134 61.111 8.75 0.00 44.19 2.71
3443 5268 1.218047 CGGGCAAGGATTCGTCTGA 59.782 57.895 0.00 0.00 0.00 3.27
3445 5270 2.125106 GCGGGCAAGGATTCGTCT 60.125 61.111 0.00 0.00 0.00 4.18
3455 5280 2.203224 TCGAAGGTTTGCGGGCAA 60.203 55.556 1.21 1.21 0.00 4.52
3493 5318 4.830765 TCGCCGCATGCAGGTACC 62.831 66.667 19.57 2.73 41.33 3.34
3600 5425 4.115279 CGGCACTTCATCGCAGAT 57.885 55.556 0.00 0.00 45.12 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.