Multiple sequence alignment - TraesCS1A01G225700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G225700 chr1A 100.000 4700 0 0 1 4700 396109015 396104316 0.000000e+00 8680
1 TraesCS1A01G225700 chr1A 93.000 100 5 2 1 98 508050964 508051063 1.360000e-30 145
2 TraesCS1A01G225700 chr1D 91.056 4651 210 83 97 4639 315544896 315540344 0.000000e+00 6095
3 TraesCS1A01G225700 chr1B 90.122 4434 228 95 141 4451 427207449 427211795 0.000000e+00 5568
4 TraesCS1A01G225700 chr1B 97.628 253 6 0 4448 4700 427211907 427212159 7.220000e-118 435
5 TraesCS1A01G225700 chr1B 92.143 140 9 1 97 236 427207285 427207422 3.710000e-46 196
6 TraesCS1A01G225700 chr1B 95.556 90 4 0 10 99 242246905 242246816 1.360000e-30 145
7 TraesCS1A01G225700 chr7A 92.523 107 3 5 1 103 77477175 77477070 1.050000e-31 148
8 TraesCS1A01G225700 chr3A 96.552 87 3 0 13 99 686191120 686191206 1.360000e-30 145
9 TraesCS1A01G225700 chr3A 90.476 105 8 2 1 104 628192009 628191906 2.280000e-28 137
10 TraesCS1A01G225700 chr3A 88.288 111 7 4 1 105 684752426 684752536 1.370000e-25 128
11 TraesCS1A01G225700 chr6A 92.000 100 7 1 1 99 76084804 76084705 6.340000e-29 139
12 TraesCS1A01G225700 chr6A 92.000 100 2 5 4 98 520357211 520357113 8.200000e-28 135
13 TraesCS1A01G225700 chr4A 88.889 117 7 6 10 120 544173450 544173566 6.340000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G225700 chr1A 396104316 396109015 4699 True 8680.000000 8680 100.000000 1 4700 1 chr1A.!!$R1 4699
1 TraesCS1A01G225700 chr1D 315540344 315544896 4552 True 6095.000000 6095 91.056000 97 4639 1 chr1D.!!$R1 4542
2 TraesCS1A01G225700 chr1B 427207285 427212159 4874 False 2066.333333 5568 93.297667 97 4700 3 chr1B.!!$F1 4603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 905 0.753848 CGTCTCTCTTCTCCCTCCCC 60.754 65.0 0.00 0.00 0.00 4.81 F
2507 2627 0.379669 AAGCGATGCTACATTGCTGC 59.620 50.0 20.18 5.32 38.25 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2736 2866 0.186386 ACAGGATACCTCCCTCTCGG 59.814 60.0 0.0 0.00 43.21 4.63 R
3831 4015 0.458669 CACATTTGAGGCCTCCATGC 59.541 55.0 29.6 10.97 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.489792 TTCCTCTTTATGCTTGACTCACT 57.510 39.130 0.00 0.00 0.00 3.41
44 45 5.078411 TCCTCTTTATGCTTGACTCACTC 57.922 43.478 0.00 0.00 0.00 3.51
46 47 4.629200 CCTCTTTATGCTTGACTCACTCAC 59.371 45.833 0.00 0.00 0.00 3.51
48 49 5.858381 TCTTTATGCTTGACTCACTCACTT 58.142 37.500 0.00 0.00 0.00 3.16
49 50 6.993079 TCTTTATGCTTGACTCACTCACTTA 58.007 36.000 0.00 0.00 0.00 2.24
50 51 7.093354 TCTTTATGCTTGACTCACTCACTTAG 58.907 38.462 0.00 0.00 0.00 2.18
52 53 5.674052 ATGCTTGACTCACTCACTTAGAT 57.326 39.130 0.00 0.00 0.00 1.98
53 54 4.814147 TGCTTGACTCACTCACTTAGATG 58.186 43.478 0.00 0.00 0.00 2.90
54 55 4.281941 TGCTTGACTCACTCACTTAGATGT 59.718 41.667 0.00 0.00 0.00 3.06
55 56 4.624882 GCTTGACTCACTCACTTAGATGTG 59.375 45.833 0.00 0.00 39.15 3.21
56 57 4.179926 TGACTCACTCACTTAGATGTGC 57.820 45.455 0.00 0.00 37.81 4.57
57 58 3.573967 TGACTCACTCACTTAGATGTGCA 59.426 43.478 0.00 0.00 37.81 4.57
59 60 5.157940 ACTCACTCACTTAGATGTGCAAT 57.842 39.130 0.00 0.00 37.81 3.56
60 61 6.071391 TGACTCACTCACTTAGATGTGCAATA 60.071 38.462 0.00 0.00 37.81 1.90
61 62 6.701340 ACTCACTCACTTAGATGTGCAATAA 58.299 36.000 0.00 0.00 37.81 1.40
63 64 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
65 66 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
66 67 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
67 68 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
68 69 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
69 70 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
111 112 8.203681 AGACACACCCTAATTATATTCTACCC 57.796 38.462 0.00 0.00 0.00 3.69
112 113 7.792736 AGACACACCCTAATTATATTCTACCCA 59.207 37.037 0.00 0.00 0.00 4.51
135 136 8.296000 CCCAATATTAACGTGCAATCAATATCA 58.704 33.333 0.00 0.00 0.00 2.15
161 192 9.865321 ATTCCTAATATCAATATGCAATGCAAC 57.135 29.630 13.45 0.00 43.62 4.17
469 527 5.525378 AGAAGAGATGGTATGTTTGAATCGC 59.475 40.000 0.00 0.00 0.00 4.58
470 528 4.769688 AGAGATGGTATGTTTGAATCGCA 58.230 39.130 0.00 0.00 0.00 5.10
486 544 1.875262 GCACCAATGATGACACGCA 59.125 52.632 0.00 0.00 0.00 5.24
562 629 7.757624 TGAATGGACGGCTCAAATAAATTTTAC 59.242 33.333 0.00 0.00 0.00 2.01
584 651 1.709578 TGGCACCATAAACAAAGGCA 58.290 45.000 0.00 0.00 0.00 4.75
586 653 2.224161 TGGCACCATAAACAAAGGCAAC 60.224 45.455 0.00 0.00 0.00 4.17
588 655 2.799978 GCACCATAAACAAAGGCAACAC 59.200 45.455 0.00 0.00 41.41 3.32
700 777 1.134159 GCATCCACCAGAGAGCAGAAT 60.134 52.381 0.00 0.00 31.55 2.40
791 868 1.968540 GACAGCAGCTGGTTCACCC 60.969 63.158 26.38 0.00 35.51 4.61
827 905 0.753848 CGTCTCTCTTCTCCCTCCCC 60.754 65.000 0.00 0.00 0.00 4.81
880 958 1.263217 ACGTCACAGCGTTTGGATTTC 59.737 47.619 0.00 0.00 43.04 2.17
965 1044 7.069455 AGAGAGAGGAAAAGAAAGGATAGCTAC 59.931 40.741 0.00 0.00 0.00 3.58
1005 1084 1.671850 GCAAGAGACGAACCGATGGAA 60.672 52.381 0.00 0.00 0.00 3.53
1021 1100 2.317040 TGGAACAAGAAGACGACCTCT 58.683 47.619 0.00 0.00 31.92 3.69
1022 1101 2.296471 TGGAACAAGAAGACGACCTCTC 59.704 50.000 0.00 0.00 31.92 3.20
1023 1102 2.559231 GGAACAAGAAGACGACCTCTCT 59.441 50.000 0.00 0.00 0.00 3.10
1024 1103 3.006003 GGAACAAGAAGACGACCTCTCTT 59.994 47.826 0.00 0.00 0.00 2.85
1025 1104 3.926821 ACAAGAAGACGACCTCTCTTC 57.073 47.619 4.92 4.92 42.77 2.87
1113 1195 3.894947 GAGGACGAGAGCTCCGCC 61.895 72.222 20.11 19.97 36.71 6.13
1134 1216 3.376935 AATGGAGTCTCCCTGCGCG 62.377 63.158 16.60 0.00 35.03 6.86
1180 1262 1.067985 CATGGATCGTCATCTCTCCCG 60.068 57.143 0.00 0.00 0.00 5.14
1192 1274 2.022240 CTCTCCCGTGCCTAGCCTTC 62.022 65.000 0.00 0.00 0.00 3.46
1254 1341 2.105134 TCCATGTTGGTGTTCTTACCGT 59.895 45.455 0.00 0.00 43.87 4.83
1281 1368 7.318909 GTCTAATCGATATGTTTTGTTCATGCG 59.681 37.037 0.00 0.00 0.00 4.73
1286 1373 5.447846 CGATATGTTTTGTTCATGCGTGTAC 59.552 40.000 8.62 8.62 0.00 2.90
1365 1452 2.670414 CTGCGAGATTTGTCTTCAGGTC 59.330 50.000 0.00 0.00 0.00 3.85
1384 1471 1.212751 GGTTCGCCATTTCTGCACC 59.787 57.895 0.00 0.00 37.19 5.01
1412 1499 5.505780 TCGATTTCTTGTGGGGATTGTATT 58.494 37.500 0.00 0.00 0.00 1.89
1414 1501 5.125417 CGATTTCTTGTGGGGATTGTATTGT 59.875 40.000 0.00 0.00 0.00 2.71
1531 1637 1.069227 GCGCCCACTAACTCTGTTTTG 60.069 52.381 0.00 0.00 0.00 2.44
1536 1642 4.083271 GCCCACTAACTCTGTTTTGTGATC 60.083 45.833 13.52 0.00 35.12 2.92
1537 1643 4.455877 CCCACTAACTCTGTTTTGTGATCC 59.544 45.833 13.52 0.00 35.12 3.36
1538 1644 5.063204 CCACTAACTCTGTTTTGTGATCCA 58.937 41.667 13.52 0.00 35.12 3.41
1539 1645 5.707298 CCACTAACTCTGTTTTGTGATCCAT 59.293 40.000 13.52 0.00 35.12 3.41
1540 1646 6.878923 CCACTAACTCTGTTTTGTGATCCATA 59.121 38.462 13.52 0.00 35.12 2.74
1655 1765 6.639686 CGCTCTAGCCTTTTCGTGTAATAATA 59.360 38.462 0.00 0.00 37.91 0.98
1656 1766 7.168637 CGCTCTAGCCTTTTCGTGTAATAATAA 59.831 37.037 0.00 0.00 37.91 1.40
1657 1767 8.989980 GCTCTAGCCTTTTCGTGTAATAATAAT 58.010 33.333 0.00 0.00 34.31 1.28
1741 1852 1.864862 CAAGGACTTGCTGCTGTCG 59.135 57.895 15.82 3.97 34.31 4.35
1759 1870 3.262420 GTCGATTACAGCACACTCCATT 58.738 45.455 0.00 0.00 0.00 3.16
1760 1871 3.307242 GTCGATTACAGCACACTCCATTC 59.693 47.826 0.00 0.00 0.00 2.67
1789 1900 5.346181 AGTGCCTTCATCTTTAGTAGGAC 57.654 43.478 0.00 0.00 0.00 3.85
1791 1902 4.081087 GTGCCTTCATCTTTAGTAGGACCA 60.081 45.833 0.00 0.00 0.00 4.02
1792 1903 4.162320 TGCCTTCATCTTTAGTAGGACCAG 59.838 45.833 0.00 0.00 0.00 4.00
1793 1904 4.406003 GCCTTCATCTTTAGTAGGACCAGA 59.594 45.833 0.00 0.00 0.00 3.86
1847 1958 2.159142 ACAGGGTTTCGAGCCGTATAAG 60.159 50.000 3.54 0.00 0.00 1.73
1853 1964 2.048444 TCGAGCCGTATAAGGTGTCT 57.952 50.000 6.57 0.00 0.00 3.41
1863 1974 6.106673 CCGTATAAGGTGTCTTCATCTTTGT 58.893 40.000 0.00 0.00 41.64 2.83
1963 2074 0.875059 GTTGAGGTGCTGGTTACTGC 59.125 55.000 0.00 0.00 41.41 4.40
2030 2143 1.109296 CGAACGGAAAAACTGTTGCG 58.891 50.000 0.00 0.00 46.60 4.85
2043 2156 3.694734 ACTGTTGCGTTGTCAATTCAAG 58.305 40.909 3.59 0.00 0.00 3.02
2047 2160 1.675483 TGCGTTGTCAATTCAAGCTGT 59.325 42.857 0.00 0.00 0.00 4.40
2048 2161 2.098934 TGCGTTGTCAATTCAAGCTGTT 59.901 40.909 0.00 0.00 0.00 3.16
2201 2321 1.340017 ACTGGTGTCATGCCCATACAC 60.340 52.381 6.16 6.16 42.17 2.90
2265 2385 0.967380 GAAGGCAATCAGGGTGGGTG 60.967 60.000 0.00 0.00 0.00 4.61
2266 2386 1.729267 AAGGCAATCAGGGTGGGTGT 61.729 55.000 0.00 0.00 0.00 4.16
2267 2387 1.978617 GGCAATCAGGGTGGGTGTG 60.979 63.158 0.00 0.00 0.00 3.82
2268 2388 1.228552 GCAATCAGGGTGGGTGTGT 60.229 57.895 0.00 0.00 0.00 3.72
2269 2389 1.244019 GCAATCAGGGTGGGTGTGTC 61.244 60.000 0.00 0.00 0.00 3.67
2270 2390 0.609131 CAATCAGGGTGGGTGTGTCC 60.609 60.000 0.00 0.00 0.00 4.02
2271 2391 2.124507 AATCAGGGTGGGTGTGTCCG 62.125 60.000 0.00 0.00 37.00 4.79
2317 2437 2.431782 TGATGAGATCTGTCGCCATTGA 59.568 45.455 0.00 0.00 0.00 2.57
2318 2438 3.070590 TGATGAGATCTGTCGCCATTGAT 59.929 43.478 0.00 0.00 0.00 2.57
2319 2439 3.103447 TGAGATCTGTCGCCATTGATC 57.897 47.619 0.00 0.00 36.51 2.92
2335 2455 7.225145 CGCCATTGATCATCATTTTTAAATGGT 59.775 33.333 12.05 5.40 44.51 3.55
2408 2528 3.671410 CCATTCCCAGGCCCCACA 61.671 66.667 0.00 0.00 0.00 4.17
2430 2550 3.163467 GGGCAGGTATACCTTACGATCT 58.837 50.000 22.36 0.00 46.09 2.75
2431 2551 4.043812 AGGGCAGGTATACCTTACGATCTA 59.956 45.833 22.36 0.00 46.09 1.98
2432 2552 4.398673 GGGCAGGTATACCTTACGATCTAG 59.601 50.000 22.36 8.58 46.09 2.43
2470 2590 3.306710 CCACGGGATTCGGATCATCAATA 60.307 47.826 5.94 0.00 44.45 1.90
2500 2620 2.988010 AAGATCCAAGCGATGCTACA 57.012 45.000 0.00 0.00 38.25 2.74
2502 2622 3.482156 AGATCCAAGCGATGCTACATT 57.518 42.857 0.00 0.00 38.25 2.71
2503 2623 3.136763 AGATCCAAGCGATGCTACATTG 58.863 45.455 0.00 0.00 38.25 2.82
2504 2624 1.016627 TCCAAGCGATGCTACATTGC 58.983 50.000 11.13 11.13 38.25 3.56
2505 2625 1.019673 CCAAGCGATGCTACATTGCT 58.980 50.000 15.10 15.10 38.25 3.91
2506 2626 1.268386 CCAAGCGATGCTACATTGCTG 60.268 52.381 20.18 14.37 38.25 4.41
2507 2627 0.379669 AAGCGATGCTACATTGCTGC 59.620 50.000 20.18 5.32 38.25 5.25
2508 2628 0.463295 AGCGATGCTACATTGCTGCT 60.463 50.000 19.09 6.62 36.99 4.24
2509 2629 0.379669 GCGATGCTACATTGCTGCTT 59.620 50.000 11.70 0.00 0.00 3.91
2510 2630 1.858798 GCGATGCTACATTGCTGCTTG 60.859 52.381 11.70 1.24 0.00 4.01
2511 2631 1.836383 GATGCTACATTGCTGCTTGC 58.164 50.000 0.00 0.00 43.25 4.01
2512 2632 1.404391 GATGCTACATTGCTGCTTGCT 59.596 47.619 0.00 0.00 43.37 3.91
2513 2633 0.524414 TGCTACATTGCTGCTTGCTG 59.476 50.000 0.00 0.00 43.37 4.41
2514 2634 0.524862 GCTACATTGCTGCTTGCTGT 59.475 50.000 0.00 2.02 43.37 4.40
2515 2635 1.739466 GCTACATTGCTGCTTGCTGTA 59.261 47.619 0.00 3.07 43.37 2.74
2516 2636 2.223203 GCTACATTGCTGCTTGCTGTAG 60.223 50.000 18.17 18.17 45.48 2.74
2517 2637 1.901591 ACATTGCTGCTTGCTGTAGT 58.098 45.000 0.00 0.00 43.37 2.73
2518 2638 3.057969 ACATTGCTGCTTGCTGTAGTA 57.942 42.857 0.00 0.00 43.37 1.82
2530 2653 6.316640 TGCTTGCTGTAGTAGTAGTAGAGAAG 59.683 42.308 12.28 12.27 0.00 2.85
2700 2823 4.384940 AGAGAAAAGACAGCCAGAAGAAC 58.615 43.478 0.00 0.00 0.00 3.01
2711 2834 2.487934 CCAGAAGAACACTGACCTGTG 58.512 52.381 5.64 5.64 43.07 3.66
2736 2866 2.588585 GGCTGTTGCTTTGCGTTGC 61.589 57.895 0.00 0.00 39.59 4.17
2771 2905 2.970324 GTCAAAGGCGTGCGTCCA 60.970 61.111 7.53 0.00 0.00 4.02
2809 2943 0.968405 AAACCGGCAATGTCAATGCT 59.032 45.000 12.50 0.00 43.34 3.79
2862 3001 0.461870 ATTCCAGCTAATGCGACGCA 60.462 50.000 26.68 26.68 45.42 5.24
2920 3059 1.742880 GCACGGCAGAGCAGAATGA 60.743 57.895 0.79 0.00 39.69 2.57
2938 3093 1.009829 GATGTGCCGTCCATCAACTC 58.990 55.000 0.00 0.00 38.82 3.01
2942 3097 0.396435 TGCCGTCCATCAACTCAACT 59.604 50.000 0.00 0.00 0.00 3.16
2943 3098 1.621317 TGCCGTCCATCAACTCAACTA 59.379 47.619 0.00 0.00 0.00 2.24
2944 3099 2.037902 TGCCGTCCATCAACTCAACTAA 59.962 45.455 0.00 0.00 0.00 2.24
2945 3100 3.071479 GCCGTCCATCAACTCAACTAAA 58.929 45.455 0.00 0.00 0.00 1.85
2951 3109 5.858581 GTCCATCAACTCAACTAAACATTGC 59.141 40.000 0.00 0.00 0.00 3.56
2956 3114 5.769662 TCAACTCAACTAAACATTGCCTGAT 59.230 36.000 0.00 0.00 0.00 2.90
2969 3127 1.339055 TGCCTGATGCTGTACTTGTCC 60.339 52.381 0.00 0.00 42.00 4.02
2975 3134 4.256110 TGATGCTGTACTTGTCCATTCTG 58.744 43.478 0.00 0.00 0.00 3.02
2987 3146 0.179065 CCATTCTGATGCAGCGAGGA 60.179 55.000 0.00 0.00 31.67 3.71
2988 3147 0.935898 CATTCTGATGCAGCGAGGAC 59.064 55.000 0.00 0.00 0.00 3.85
2989 3148 0.529337 ATTCTGATGCAGCGAGGACG 60.529 55.000 0.00 0.00 42.93 4.79
2990 3149 1.595093 TTCTGATGCAGCGAGGACGA 61.595 55.000 0.00 0.00 42.66 4.20
2991 3150 1.067084 CTGATGCAGCGAGGACGAT 59.933 57.895 0.00 0.00 42.66 3.73
3034 3196 3.731728 GGCACCAGGGGATGCAGA 61.732 66.667 0.00 0.00 43.93 4.26
3070 3232 4.664677 CGATGGACGGCCCGGATC 62.665 72.222 3.83 0.00 37.93 3.36
3117 3279 1.100510 TGGCGATAACAGTACGAGCT 58.899 50.000 0.00 0.00 0.00 4.09
3123 3285 4.675404 ACAGTACGAGCTGTTGCC 57.325 55.556 9.98 0.00 46.45 4.52
3124 3286 2.050269 ACAGTACGAGCTGTTGCCT 58.950 52.632 9.98 0.00 46.45 4.75
3148 3310 2.663826 TGGCACAAAACTGAACCAAC 57.336 45.000 0.00 0.00 31.92 3.77
3150 3312 1.555477 GCACAAAACTGAACCAACCG 58.445 50.000 0.00 0.00 0.00 4.44
3151 3313 1.555477 CACAAAACTGAACCAACCGC 58.445 50.000 0.00 0.00 0.00 5.68
3152 3314 1.135257 CACAAAACTGAACCAACCGCA 60.135 47.619 0.00 0.00 0.00 5.69
3153 3315 1.754226 ACAAAACTGAACCAACCGCAT 59.246 42.857 0.00 0.00 0.00 4.73
3154 3316 2.167487 ACAAAACTGAACCAACCGCATT 59.833 40.909 0.00 0.00 0.00 3.56
3155 3317 3.194062 CAAAACTGAACCAACCGCATTT 58.806 40.909 0.00 0.00 0.00 2.32
3156 3318 2.793278 AACTGAACCAACCGCATTTC 57.207 45.000 0.00 0.00 0.00 2.17
3158 3320 1.608590 ACTGAACCAACCGCATTTCTG 59.391 47.619 0.00 0.00 0.00 3.02
3159 3321 1.608590 CTGAACCAACCGCATTTCTGT 59.391 47.619 0.00 0.00 0.00 3.41
3160 3322 1.606668 TGAACCAACCGCATTTCTGTC 59.393 47.619 0.00 0.00 0.00 3.51
3162 3324 1.234615 ACCAACCGCATTTCTGTCCG 61.235 55.000 0.00 0.00 0.00 4.79
3163 3325 1.234615 CCAACCGCATTTCTGTCCGT 61.235 55.000 0.00 0.00 0.00 4.69
3164 3326 0.591170 CAACCGCATTTCTGTCCGTT 59.409 50.000 0.00 0.00 0.00 4.44
3165 3327 1.801771 CAACCGCATTTCTGTCCGTTA 59.198 47.619 0.00 0.00 0.00 3.18
3166 3328 1.435577 ACCGCATTTCTGTCCGTTAC 58.564 50.000 0.00 0.00 0.00 2.50
3168 3330 0.368907 CGCATTTCTGTCCGTTACCG 59.631 55.000 0.00 0.00 0.00 4.02
3194 3362 3.810579 CAGAGCTGTCTGTCACCTC 57.189 57.895 0.00 0.00 44.72 3.85
3275 3445 2.655073 ATCGCCGTGGTGACCATCA 61.655 57.895 7.94 0.00 37.47 3.07
3399 3575 2.979151 CAGATCGATCAGATGACGAAGC 59.021 50.000 26.47 0.00 40.26 3.86
3416 3592 1.059913 AGCAACTAACAGCTGAGGGT 58.940 50.000 23.35 12.22 40.13 4.34
3622 3802 6.430864 TCATGTATCTTCTCTCTTCCTCTGT 58.569 40.000 0.00 0.00 0.00 3.41
3737 3917 2.289840 GCAGGGGGCAATGTTCAAT 58.710 52.632 0.00 0.00 43.97 2.57
3831 4015 4.428209 CAGTCTAGCACAGTTCACTATGG 58.572 47.826 0.00 0.00 0.00 2.74
3927 4124 3.369756 TCACTTCCGTGCGCTATAAAAAG 59.630 43.478 9.73 7.55 40.99 2.27
4030 4233 3.831911 ACCACCCCATAACACTTGAAATG 59.168 43.478 0.00 0.00 0.00 2.32
4038 4241 7.981225 CCCCATAACACTTGAAATGGATTTTAG 59.019 37.037 13.07 0.00 41.20 1.85
4082 4286 6.096846 ACCAAGCAGAAAAATATCCATGTACC 59.903 38.462 0.00 0.00 0.00 3.34
4084 4288 6.018433 AGCAGAAAAATATCCATGTACCCT 57.982 37.500 0.00 0.00 0.00 4.34
4095 4299 1.985895 CATGTACCCTATTCCCTCCCC 59.014 57.143 0.00 0.00 0.00 4.81
4149 4353 2.768527 CTCATCCAGGTTAGGCTTCTCA 59.231 50.000 0.00 0.00 0.00 3.27
4399 4604 8.986929 AATTAAGAGTGGGGATCAGAATAAAG 57.013 34.615 0.00 0.00 0.00 1.85
4534 4854 3.005791 ACCAAAAAGGCTAGCATGTGTTC 59.994 43.478 18.24 0.00 43.14 3.18
4561 4881 5.869888 GGACATATTAAGATACAAGGCCTCG 59.130 44.000 5.23 0.00 0.00 4.63
4690 5010 8.449251 TGCAAGAAATATATGTAATCTGCACA 57.551 30.769 0.00 0.00 0.00 4.57
4691 5011 8.562052 TGCAAGAAATATATGTAATCTGCACAG 58.438 33.333 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.299141 AGTGAGTCAAGCATAAAGAGGAAAA 58.701 36.000 0.00 0.00 0.00 2.29
22 23 4.528206 TGAGTGAGTCAAGCATAAAGAGGA 59.472 41.667 0.00 0.00 29.64 3.71
23 24 4.629200 GTGAGTGAGTCAAGCATAAAGAGG 59.371 45.833 0.00 0.00 36.74 3.69
25 26 5.474578 AGTGAGTGAGTCAAGCATAAAGA 57.525 39.130 0.00 0.00 36.74 2.52
26 27 7.093354 TCTAAGTGAGTGAGTCAAGCATAAAG 58.907 38.462 0.00 0.00 36.74 1.85
27 28 6.993079 TCTAAGTGAGTGAGTCAAGCATAAA 58.007 36.000 0.00 0.00 36.74 1.40
28 29 6.590234 TCTAAGTGAGTGAGTCAAGCATAA 57.410 37.500 0.00 0.00 36.74 1.90
29 30 6.153510 ACATCTAAGTGAGTGAGTCAAGCATA 59.846 38.462 0.00 0.00 36.74 3.14
32 33 4.624882 CACATCTAAGTGAGTGAGTCAAGC 59.375 45.833 0.00 0.00 42.05 4.01
33 34 4.624882 GCACATCTAAGTGAGTGAGTCAAG 59.375 45.833 0.00 0.00 42.05 3.02
34 35 4.039124 TGCACATCTAAGTGAGTGAGTCAA 59.961 41.667 0.00 0.00 42.05 3.18
36 37 4.179926 TGCACATCTAAGTGAGTGAGTC 57.820 45.455 0.00 0.00 42.05 3.36
37 38 4.607293 TTGCACATCTAAGTGAGTGAGT 57.393 40.909 0.00 0.00 42.05 3.41
40 41 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
41 42 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
43 44 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
44 45 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
70 71 5.046529 GTGTGTCTTAGGCACATCTAGATG 58.953 45.833 27.63 27.63 46.66 2.90
71 72 4.100189 GGTGTGTCTTAGGCACATCTAGAT 59.900 45.833 22.76 0.00 46.66 1.98
72 73 3.447586 GGTGTGTCTTAGGCACATCTAGA 59.552 47.826 22.76 0.00 46.66 2.43
73 74 3.430929 GGGTGTGTCTTAGGCACATCTAG 60.431 52.174 26.30 0.00 46.66 2.43
75 76 1.279271 GGGTGTGTCTTAGGCACATCT 59.721 52.381 26.30 0.00 46.66 2.90
76 77 1.279271 AGGGTGTGTCTTAGGCACATC 59.721 52.381 22.76 21.70 46.66 3.06
77 78 1.362224 AGGGTGTGTCTTAGGCACAT 58.638 50.000 22.76 4.23 46.66 3.21
78 79 2.018355 TAGGGTGTGTCTTAGGCACA 57.982 50.000 16.22 16.22 43.60 4.57
79 80 3.629142 ATTAGGGTGTGTCTTAGGCAC 57.371 47.619 10.36 10.36 37.37 5.01
81 82 8.376270 AGAATATAATTAGGGTGTGTCTTAGGC 58.624 37.037 0.00 0.00 0.00 3.93
85 86 8.657712 GGGTAGAATATAATTAGGGTGTGTCTT 58.342 37.037 0.00 0.00 0.00 3.01
87 88 7.970102 TGGGTAGAATATAATTAGGGTGTGTC 58.030 38.462 0.00 0.00 0.00 3.67
88 89 7.941053 TGGGTAGAATATAATTAGGGTGTGT 57.059 36.000 0.00 0.00 0.00 3.72
135 136 9.865321 GTTGCATTGCATATTGATATTAGGAAT 57.135 29.630 12.95 0.00 38.76 3.01
332 382 6.214191 TGTCTTCTCTTAGCTAAGTGATGG 57.786 41.667 30.89 25.85 36.20 3.51
374 432 8.194769 GGTGATTGTTTAGTTGGAAGAGAAAAA 58.805 33.333 0.00 0.00 0.00 1.94
399 457 1.064758 TGTTAGCAATGCCACCTAGGG 60.065 52.381 14.81 1.73 38.09 3.53
469 527 1.725611 CGTTGCGTGTCATCATTGGTG 60.726 52.381 0.00 0.00 0.00 4.17
470 528 0.516877 CGTTGCGTGTCATCATTGGT 59.483 50.000 0.00 0.00 0.00 3.67
486 544 8.842280 TGGTTGTCATTTTACTCTTTATTCGTT 58.158 29.630 0.00 0.00 0.00 3.85
562 629 3.002102 GCCTTTGTTTATGGTGCCAATG 58.998 45.455 0.00 0.00 0.00 2.82
584 651 4.453480 TGGAAGAGAAATTCCCTGTGTT 57.547 40.909 3.18 0.00 46.98 3.32
586 653 5.789643 TTTTGGAAGAGAAATTCCCTGTG 57.210 39.130 3.18 0.00 46.98 3.66
621 698 6.927416 TGCTCTCTCTTTTTGTACGGTATAA 58.073 36.000 0.00 0.00 0.00 0.98
624 701 4.859304 TGCTCTCTCTTTTTGTACGGTA 57.141 40.909 0.00 0.00 0.00 4.02
700 777 4.503370 CGCGTAACCTTTGGCTTTTAAAAA 59.497 37.500 0.00 0.00 0.00 1.94
791 868 1.672356 CGGTGCCCTCTGTTCCTTG 60.672 63.158 0.00 0.00 0.00 3.61
827 905 3.440173 CCTAATGCTTACCAACCACTGTG 59.560 47.826 0.00 0.00 0.00 3.66
965 1044 0.808125 TTCCAATTCAATGGCGGTCG 59.192 50.000 0.00 0.00 40.46 4.79
1005 1084 3.926821 GAAGAGAGGTCGTCTTCTTGT 57.073 47.619 5.74 0.00 44.46 3.16
1011 1090 4.028993 AGAAGAAGAAGAGAGGTCGTCT 57.971 45.455 0.00 0.00 42.66 4.18
1016 1095 6.014584 GGAAGAAGAAGAAGAAGAAGAGAGGT 60.015 42.308 0.00 0.00 0.00 3.85
1021 1100 6.081356 AGGAGGAAGAAGAAGAAGAAGAAGA 58.919 40.000 0.00 0.00 0.00 2.87
1022 1101 6.358974 AGGAGGAAGAAGAAGAAGAAGAAG 57.641 41.667 0.00 0.00 0.00 2.85
1023 1102 6.071840 CGTAGGAGGAAGAAGAAGAAGAAGAA 60.072 42.308 0.00 0.00 0.00 2.52
1024 1103 5.416326 CGTAGGAGGAAGAAGAAGAAGAAGA 59.584 44.000 0.00 0.00 0.00 2.87
1025 1104 5.646606 CGTAGGAGGAAGAAGAAGAAGAAG 58.353 45.833 0.00 0.00 0.00 2.85
1026 1105 4.082136 GCGTAGGAGGAAGAAGAAGAAGAA 60.082 45.833 0.00 0.00 0.00 2.52
1027 1106 3.444388 GCGTAGGAGGAAGAAGAAGAAGA 59.556 47.826 0.00 0.00 0.00 2.87
1028 1107 3.429684 GGCGTAGGAGGAAGAAGAAGAAG 60.430 52.174 0.00 0.00 0.00 2.85
1029 1108 2.496470 GGCGTAGGAGGAAGAAGAAGAA 59.504 50.000 0.00 0.00 0.00 2.52
1078 1160 0.181114 TCCTCCTCATGGCAAATCCG 59.819 55.000 0.00 0.00 37.80 4.18
1113 1195 1.817099 GCAGGGAGACTCCATTGCG 60.817 63.158 25.42 10.17 38.35 4.85
1134 1216 1.153667 CTTGAGAGAGCCGGAGCAC 60.154 63.158 5.05 0.00 43.56 4.40
1180 1262 0.610687 ACTGACAGAAGGCTAGGCAC 59.389 55.000 19.70 11.85 0.00 5.01
1192 1274 3.818387 CATGCAAGCAGTTAACTGACAG 58.182 45.455 34.43 23.07 46.59 3.51
1254 1341 8.122330 GCATGAACAAAACATATCGATTAGACA 58.878 33.333 1.71 0.00 0.00 3.41
1365 1452 1.154225 GTGCAGAAATGGCGAACCG 60.154 57.895 0.00 0.00 39.70 4.44
1384 1471 1.407437 CCCCACAAGAAATCGAGGAGG 60.407 57.143 0.00 0.00 0.00 4.30
1412 1499 3.622612 ACGAAATGAATGATGCGATCACA 59.377 39.130 0.00 0.00 43.01 3.58
1414 1501 3.248363 GGACGAAATGAATGATGCGATCA 59.752 43.478 0.00 2.05 44.55 2.92
1538 1644 9.672673 GGCACTTGATTAGGATTATGTATGTAT 57.327 33.333 0.00 0.00 0.00 2.29
1539 1645 8.100791 GGGCACTTGATTAGGATTATGTATGTA 58.899 37.037 0.00 0.00 0.00 2.29
1540 1646 6.942576 GGGCACTTGATTAGGATTATGTATGT 59.057 38.462 0.00 0.00 0.00 2.29
1655 1765 2.564062 CCAGCCCAGTTGTTGATTGATT 59.436 45.455 0.00 0.00 0.00 2.57
1656 1766 2.173519 CCAGCCCAGTTGTTGATTGAT 58.826 47.619 0.00 0.00 0.00 2.57
1657 1767 1.133513 ACCAGCCCAGTTGTTGATTGA 60.134 47.619 0.00 0.00 0.00 2.57
1667 1777 4.189580 ACGTTGCACCAGCCCAGT 62.190 61.111 0.00 0.00 41.13 4.00
1741 1852 8.607441 TTATATGAATGGAGTGTGCTGTAATC 57.393 34.615 0.00 0.00 0.00 1.75
1879 1990 6.590234 AACCCTGTCAACAAAAGGATTATC 57.410 37.500 0.00 0.00 32.43 1.75
2030 2143 4.305989 TCCAACAGCTTGAATTGACAAC 57.694 40.909 0.00 0.00 0.00 3.32
2043 2156 2.158711 TCTGATCCATCCATCCAACAGC 60.159 50.000 0.00 0.00 0.00 4.40
2047 2160 4.659835 TGTGTATCTGATCCATCCATCCAA 59.340 41.667 0.00 0.00 0.00 3.53
2048 2161 4.040829 GTGTGTATCTGATCCATCCATCCA 59.959 45.833 0.00 0.00 0.00 3.41
2141 2256 4.220602 AGACCGCTGCATCATATACACATA 59.779 41.667 0.00 0.00 0.00 2.29
2142 2257 3.007290 AGACCGCTGCATCATATACACAT 59.993 43.478 0.00 0.00 0.00 3.21
2143 2258 2.365293 AGACCGCTGCATCATATACACA 59.635 45.455 0.00 0.00 0.00 3.72
2144 2259 3.032017 AGACCGCTGCATCATATACAC 57.968 47.619 0.00 0.00 0.00 2.90
2201 2321 8.279970 TGAAAAGAATGTGGTACCTAATCATG 57.720 34.615 14.36 0.00 0.00 3.07
2265 2385 0.949105 CTGGTGGTTAGCACGGACAC 60.949 60.000 8.49 0.00 0.00 3.67
2266 2386 1.369692 CTGGTGGTTAGCACGGACA 59.630 57.895 8.49 0.54 0.00 4.02
2267 2387 1.375523 CCTGGTGGTTAGCACGGAC 60.376 63.158 8.49 0.00 0.00 4.79
2268 2388 2.589157 CCCTGGTGGTTAGCACGGA 61.589 63.158 8.49 0.00 33.87 4.69
2269 2389 2.046314 CCCTGGTGGTTAGCACGG 60.046 66.667 8.49 5.10 0.00 4.94
2270 2390 1.079127 CTCCCTGGTGGTTAGCACG 60.079 63.158 8.49 0.00 34.77 5.34
2271 2391 1.299976 CCTCCCTGGTGGTTAGCAC 59.700 63.158 5.94 5.94 34.77 4.40
2317 2437 7.185318 TGGCTCACCATTTAAAAATGATGAT 57.815 32.000 11.91 0.00 45.36 2.45
2318 2438 6.602410 TGGCTCACCATTTAAAAATGATGA 57.398 33.333 15.37 13.21 44.56 2.92
2335 2455 1.229177 TGTCTACCTGGCTGGCTCA 60.229 57.895 10.71 2.25 40.22 4.26
2430 2550 0.468771 GGTCCCTAAGCGGCCTACTA 60.469 60.000 0.00 0.00 0.00 1.82
2431 2551 1.761271 GGTCCCTAAGCGGCCTACT 60.761 63.158 0.00 0.00 0.00 2.57
2432 2552 2.062177 TGGTCCCTAAGCGGCCTAC 61.062 63.158 0.00 0.00 0.00 3.18
2470 2590 6.710597 TCGCTTGGATCTTACTACTAACAT 57.289 37.500 0.00 0.00 0.00 2.71
2503 2623 3.512033 ACTACTACTACAGCAAGCAGC 57.488 47.619 0.00 0.00 46.19 5.25
2504 2624 5.818336 TCTCTACTACTACTACAGCAAGCAG 59.182 44.000 0.00 0.00 0.00 4.24
2505 2625 5.742063 TCTCTACTACTACTACAGCAAGCA 58.258 41.667 0.00 0.00 0.00 3.91
2506 2626 6.238538 CCTTCTCTACTACTACTACAGCAAGC 60.239 46.154 0.00 0.00 0.00 4.01
2507 2627 7.049133 TCCTTCTCTACTACTACTACAGCAAG 58.951 42.308 0.00 0.00 0.00 4.01
2508 2628 6.955364 TCCTTCTCTACTACTACTACAGCAA 58.045 40.000 0.00 0.00 0.00 3.91
2509 2629 6.556974 TCCTTCTCTACTACTACTACAGCA 57.443 41.667 0.00 0.00 0.00 4.41
2510 2630 7.012610 CCTTTCCTTCTCTACTACTACTACAGC 59.987 44.444 0.00 0.00 0.00 4.40
2511 2631 8.266473 TCCTTTCCTTCTCTACTACTACTACAG 58.734 40.741 0.00 0.00 0.00 2.74
2512 2632 8.155620 TCCTTTCCTTCTCTACTACTACTACA 57.844 38.462 0.00 0.00 0.00 2.74
2513 2633 8.892723 GTTCCTTTCCTTCTCTACTACTACTAC 58.107 40.741 0.00 0.00 0.00 2.73
2514 2634 8.052141 GGTTCCTTTCCTTCTCTACTACTACTA 58.948 40.741 0.00 0.00 0.00 1.82
2515 2635 6.891361 GGTTCCTTTCCTTCTCTACTACTACT 59.109 42.308 0.00 0.00 0.00 2.57
2516 2636 6.096705 GGGTTCCTTTCCTTCTCTACTACTAC 59.903 46.154 0.00 0.00 0.00 2.73
2517 2637 6.193504 GGGTTCCTTTCCTTCTCTACTACTA 58.806 44.000 0.00 0.00 0.00 1.82
2518 2638 5.024785 GGGTTCCTTTCCTTCTCTACTACT 58.975 45.833 0.00 0.00 0.00 2.57
2530 2653 1.613520 GGTGCTACTGGGTTCCTTTCC 60.614 57.143 0.00 0.00 0.00 3.13
2700 2823 1.239296 CCCACATGCACAGGTCAGTG 61.239 60.000 0.00 0.00 42.37 3.66
2711 2834 0.947180 CAAAGCAACAGCCCACATGC 60.947 55.000 0.00 0.00 39.06 4.06
2736 2866 0.186386 ACAGGATACCTCCCTCTCGG 59.814 60.000 0.00 0.00 43.21 4.63
2771 2905 5.670485 GGTTTGGTGAGATTTGGAGTTTTT 58.330 37.500 0.00 0.00 0.00 1.94
2809 2943 1.267574 GGCTGGACTGGACTGGATGA 61.268 60.000 0.00 0.00 0.00 2.92
2843 2982 0.461870 TGCGTCGCATTAGCTGGAAT 60.462 50.000 17.58 0.00 39.10 3.01
2844 2983 1.079474 TGCGTCGCATTAGCTGGAA 60.079 52.632 17.58 0.00 39.10 3.53
2920 3059 0.324614 TGAGTTGATGGACGGCACAT 59.675 50.000 0.00 0.00 0.00 3.21
2924 3079 2.380084 TAGTTGAGTTGATGGACGGC 57.620 50.000 0.00 0.00 0.00 5.68
2951 3109 2.768253 TGGACAAGTACAGCATCAGG 57.232 50.000 0.00 0.00 0.00 3.86
2956 3114 4.256110 CATCAGAATGGACAAGTACAGCA 58.744 43.478 0.00 0.00 36.16 4.41
2969 3127 0.935898 GTCCTCGCTGCATCAGAATG 59.064 55.000 0.00 0.00 32.44 2.67
2975 3134 0.319383 ATCATCGTCCTCGCTGCATC 60.319 55.000 0.00 0.00 33.91 3.91
2987 3146 1.480312 CCTCCTCCTCCTCATCATCGT 60.480 57.143 0.00 0.00 0.00 3.73
2988 3147 1.202989 TCCTCCTCCTCCTCATCATCG 60.203 57.143 0.00 0.00 0.00 3.84
2989 3148 2.528564 CTCCTCCTCCTCCTCATCATC 58.471 57.143 0.00 0.00 0.00 2.92
2990 3149 1.482930 GCTCCTCCTCCTCCTCATCAT 60.483 57.143 0.00 0.00 0.00 2.45
2991 3150 0.105760 GCTCCTCCTCCTCCTCATCA 60.106 60.000 0.00 0.00 0.00 3.07
2992 3151 0.188342 AGCTCCTCCTCCTCCTCATC 59.812 60.000 0.00 0.00 0.00 2.92
3027 3189 2.325857 GACGCCGCATTCTGCATC 59.674 61.111 0.00 0.00 45.36 3.91
3108 3270 1.293498 CCAGGCAACAGCTCGTACT 59.707 57.895 0.00 0.00 41.41 2.73
3122 3284 0.249573 CAGTTTTGTGCCAAGCCAGG 60.250 55.000 0.00 0.00 0.00 4.45
3123 3285 0.746063 TCAGTTTTGTGCCAAGCCAG 59.254 50.000 0.00 0.00 0.00 4.85
3124 3286 1.134848 GTTCAGTTTTGTGCCAAGCCA 60.135 47.619 0.00 0.00 0.00 4.75
3135 3297 3.132111 AGAAATGCGGTTGGTTCAGTTTT 59.868 39.130 0.00 0.00 0.00 2.43
3147 3309 1.435577 GTAACGGACAGAAATGCGGT 58.564 50.000 0.00 0.00 37.80 5.68
3148 3310 0.725117 GGTAACGGACAGAAATGCGG 59.275 55.000 0.00 0.00 37.80 5.69
3166 3328 2.279069 ACAGCTCTGACCTGTCCGG 61.279 63.158 3.60 0.00 39.19 5.14
3170 3332 0.965439 GACAGACAGCTCTGACCTGT 59.035 55.000 20.29 20.29 46.32 4.00
3172 3334 0.965439 GTGACAGACAGCTCTGACCT 59.035 55.000 9.77 0.00 46.32 3.85
3173 3335 0.037790 GGTGACAGACAGCTCTGACC 60.038 60.000 9.77 4.41 46.32 4.02
3174 3336 3.505808 GGTGACAGACAGCTCTGAC 57.494 57.895 9.77 4.48 46.32 3.51
3194 3362 4.624882 CAGAAGTTTCAGAGATCAGAACCG 59.375 45.833 0.00 0.00 0.00 4.44
3399 3575 4.610945 CAAAAACCCTCAGCTGTTAGTTG 58.389 43.478 14.67 6.70 0.00 3.16
3416 3592 6.457355 AGAATGTACATCTGCAATGCAAAAA 58.543 32.000 9.92 0.00 38.41 1.94
3556 3732 5.163258 ACCATGTTCCTAGGAATGACAGATC 60.163 44.000 26.74 11.92 36.45 2.75
3558 3734 4.080919 CACCATGTTCCTAGGAATGACAGA 60.081 45.833 26.74 3.44 36.45 3.41
3737 3917 7.232330 TGAATGGTTTACAACTGATGGAATTGA 59.768 33.333 0.00 0.00 29.94 2.57
3831 4015 0.458669 CACATTTGAGGCCTCCATGC 59.541 55.000 29.60 10.97 0.00 4.06
3882 4066 3.342377 TCATACGCAGGGACATTTTCA 57.658 42.857 0.00 0.00 0.00 2.69
3883 4067 4.900635 ATTCATACGCAGGGACATTTTC 57.099 40.909 0.00 0.00 0.00 2.29
3965 4167 3.330701 AGTTATTTCTCTCCAGTTGCCCA 59.669 43.478 0.00 0.00 0.00 5.36
4030 4233 8.570068 TGTAACACATACCCTTTCTAAAATCC 57.430 34.615 0.00 0.00 33.27 3.01
4038 4241 6.394025 TTGGTTTGTAACACATACCCTTTC 57.606 37.500 13.95 0.00 45.72 2.62
4058 4262 6.461509 GGGTACATGGATATTTTTCTGCTTGG 60.462 42.308 0.00 0.00 0.00 3.61
4095 4299 1.004320 TCGGATTTCGTGTGTGGGG 60.004 57.895 0.00 0.00 40.32 4.96
4097 4301 1.194547 CAACTCGGATTTCGTGTGTGG 59.805 52.381 0.00 0.00 43.59 4.17
4173 4377 3.937814 TGTTGTACTGCTACCATCCTTG 58.062 45.455 0.00 0.00 0.00 3.61
4185 4389 3.367992 TGCAAGCCATTTGTTGTACTG 57.632 42.857 0.00 0.00 39.08 2.74
4239 4444 6.039616 AGAAAATACTGAGTGCGAGATCTTC 58.960 40.000 0.00 0.00 0.00 2.87
4399 4604 5.402270 GCACACTTATGTTTGGTGAATTCAC 59.598 40.000 27.16 27.16 40.77 3.18
4534 4854 5.940470 GGCCTTGTATCTTAATATGTCCCAG 59.060 44.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.