Multiple sequence alignment - TraesCS1A01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G225200 chr1A 100.000 5775 0 0 1 5775 395463091 395457317 0.000000e+00 10665.0
1 TraesCS1A01G225200 chr1A 82.671 277 39 7 5452 5721 476074296 476074022 2.690000e-58 237.0
2 TraesCS1A01G225200 chr1A 84.328 134 13 4 2547 2672 444171812 444171679 2.180000e-24 124.0
3 TraesCS1A01G225200 chr1A 83.206 131 14 4 2547 2669 575548284 575548154 4.730000e-21 113.0
4 TraesCS1A01G225200 chr1A 95.588 68 3 0 5374 5441 395457651 395457584 6.120000e-20 110.0
5 TraesCS1A01G225200 chr1A 95.588 68 3 0 5441 5508 395457718 395457651 6.120000e-20 110.0
6 TraesCS1A01G225200 chr1D 94.484 4333 133 21 1168 5441 314989594 314985309 0.000000e+00 6580.0
7 TraesCS1A01G225200 chr1D 90.525 591 19 17 587 1158 314990290 314989718 0.000000e+00 747.0
8 TraesCS1A01G225200 chr1D 87.714 350 22 11 262 597 314990657 314990315 7.020000e-104 388.0
9 TraesCS1A01G225200 chr1D 96.178 157 6 0 5433 5589 314985384 314985228 2.060000e-64 257.0
10 TraesCS1A01G225200 chr1D 89.326 178 10 5 1 171 314990867 314990692 1.260000e-51 215.0
11 TraesCS1A01G225200 chr1D 97.222 72 2 0 5650 5721 314985227 314985156 7.860000e-24 122.0
12 TraesCS1A01G225200 chr1D 100.000 44 0 0 5732 5775 314985117 314985074 1.330000e-11 82.4
13 TraesCS1A01G225200 chr1B 93.589 2137 72 18 1168 3261 426686608 426684494 0.000000e+00 3127.0
14 TraesCS1A01G225200 chr1B 94.894 1645 62 11 3497 5135 426684430 426682802 0.000000e+00 2553.0
15 TraesCS1A01G225200 chr1B 85.533 947 53 35 256 1173 426687625 426686734 0.000000e+00 913.0
16 TraesCS1A01G225200 chr1B 81.949 277 44 3 5450 5721 502983196 502982921 4.500000e-56 230.0
17 TraesCS1A01G225200 chr1B 87.425 167 6 6 1 165 426687776 426687623 1.650000e-40 178.0
18 TraesCS1A01G225200 chr2B 81.985 272 41 6 5454 5719 159598208 159597939 2.090000e-54 224.0
19 TraesCS1A01G225200 chrUn 82.800 250 36 5 5476 5719 110390845 110390597 3.500000e-52 217.0
20 TraesCS1A01G225200 chr7B 81.102 254 38 7 5475 5721 734504982 734504732 1.640000e-45 195.0
21 TraesCS1A01G225200 chr4B 79.264 299 33 7 5451 5721 105010958 105010661 1.280000e-41 182.0
22 TraesCS1A01G225200 chr2A 85.065 154 19 2 5570 5719 105686316 105686469 2.790000e-33 154.0
23 TraesCS1A01G225200 chr6B 83.766 154 15 5 2524 2669 11401323 11401474 2.810000e-28 137.0
24 TraesCS1A01G225200 chr3A 83.969 131 13 4 2547 2669 698287652 698287782 1.020000e-22 119.0
25 TraesCS1A01G225200 chr6D 85.593 118 9 4 2547 2656 57462882 57462999 3.660000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G225200 chr1A 395457317 395463091 5774 True 10665.000000 10665 100.000000 1 5775 1 chr1A.!!$R1 5774
1 TraesCS1A01G225200 chr1D 314985074 314990867 5793 True 1198.771429 6580 93.635571 1 5775 7 chr1D.!!$R1 5774
2 TraesCS1A01G225200 chr1B 426682802 426687776 4974 True 1692.750000 3127 90.360250 1 5135 4 chr1B.!!$R2 5134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 814 0.033601 TCCTCCTGTCTCTCTCTGCC 60.034 60.000 0.00 0.0 0.00 4.85 F
1162 1247 1.005037 CACAGCGGCTACAAGACCA 60.005 57.895 0.26 0.0 0.00 4.02 F
2099 2337 0.106217 CAAGTTGTTGGGTGAGGGGT 60.106 55.000 0.00 0.0 0.00 4.95 F
2799 3064 0.188342 AAAGTTGGGCCAGTGACCAT 59.812 50.000 6.23 0.0 36.48 3.55 F
3032 3303 0.875059 GCAGCTTGTAGGTGGTGTTC 59.125 55.000 7.85 0.0 43.49 3.18 F
3924 4227 0.521291 AATTGGATCGTGTGGTTGCG 59.479 50.000 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1912 0.458669 CGGCCAATACGACTGTAGGT 59.541 55.000 2.24 0.00 33.17 3.08 R
2980 3251 0.392193 AGCAAACTCCTGCATCTCCG 60.392 55.000 0.00 0.00 45.18 4.63 R
3009 3280 1.302752 CCACCTACAAGCTGCTGCA 60.303 57.895 18.42 0.88 42.74 4.41 R
3924 4227 1.598601 GTCTCGAGGATCTGTCGGTAC 59.401 57.143 13.56 10.88 38.02 3.34 R
4639 4943 2.123897 AACTTGCGTGGGTTGGCT 60.124 55.556 0.00 0.00 0.00 4.75 R
5278 5588 0.166814 GTAGCGCACTGAGCAAAAGG 59.833 55.000 11.47 0.00 46.13 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 113 2.124011 CATGCATTAACATGGCCGTC 57.876 50.000 0.00 0.00 43.05 4.79
123 127 4.973055 CGTCGCCCGTCCAACCAA 62.973 66.667 0.00 0.00 0.00 3.67
139 145 1.081513 ACCAACCACCCTACCCTATCA 59.918 52.381 0.00 0.00 0.00 2.15
141 147 1.489230 CAACCACCCTACCCTATCACC 59.511 57.143 0.00 0.00 0.00 4.02
166 172 7.148069 CCCCTAATCAGTTCAGAAAATTACCAC 60.148 40.741 0.00 0.00 0.00 4.16
167 173 7.148069 CCCTAATCAGTTCAGAAAATTACCACC 60.148 40.741 0.00 0.00 0.00 4.61
168 174 7.393234 CCTAATCAGTTCAGAAAATTACCACCA 59.607 37.037 0.00 0.00 0.00 4.17
169 175 7.781324 AATCAGTTCAGAAAATTACCACCAT 57.219 32.000 0.00 0.00 0.00 3.55
170 176 6.573664 TCAGTTCAGAAAATTACCACCATG 57.426 37.500 0.00 0.00 0.00 3.66
171 177 6.303054 TCAGTTCAGAAAATTACCACCATGA 58.697 36.000 0.00 0.00 0.00 3.07
172 178 6.775142 TCAGTTCAGAAAATTACCACCATGAA 59.225 34.615 0.00 0.00 0.00 2.57
173 179 7.451255 TCAGTTCAGAAAATTACCACCATGAAT 59.549 33.333 0.00 0.00 0.00 2.57
174 180 8.090214 CAGTTCAGAAAATTACCACCATGAATT 58.910 33.333 0.00 0.00 0.00 2.17
175 181 8.650490 AGTTCAGAAAATTACCACCATGAATTT 58.350 29.630 0.00 0.00 34.94 1.82
176 182 8.925700 GTTCAGAAAATTACCACCATGAATTTC 58.074 33.333 0.00 0.00 32.88 2.17
177 183 8.187913 TCAGAAAATTACCACCATGAATTTCA 57.812 30.769 0.75 0.75 32.88 2.69
178 184 8.646004 TCAGAAAATTACCACCATGAATTTCAA 58.354 29.630 2.68 0.00 32.88 2.69
179 185 9.270640 CAGAAAATTACCACCATGAATTTCAAA 57.729 29.630 2.68 0.00 32.88 2.69
180 186 9.844257 AGAAAATTACCACCATGAATTTCAAAA 57.156 25.926 2.68 0.00 32.88 2.44
188 194 9.625747 ACCACCATGAATTTCAAAATAAAAAGT 57.374 25.926 2.68 0.00 0.00 2.66
201 207 8.705594 TCAAAATAAAAAGTTACCACCATGGAA 58.294 29.630 21.47 0.00 40.96 3.53
205 211 9.500785 AATAAAAAGTTACCACCATGGAAAATG 57.499 29.630 21.47 5.85 40.96 2.32
209 215 5.831103 AGTTACCACCATGGAAAATGATCT 58.169 37.500 21.47 4.15 40.96 2.75
210 216 5.888161 AGTTACCACCATGGAAAATGATCTC 59.112 40.000 21.47 0.00 40.96 2.75
211 217 3.635591 ACCACCATGGAAAATGATCTCC 58.364 45.455 21.47 0.00 40.96 3.71
212 218 2.961062 CCACCATGGAAAATGATCTCCC 59.039 50.000 21.47 0.00 40.96 4.30
213 219 3.373438 CCACCATGGAAAATGATCTCCCT 60.373 47.826 21.47 0.00 40.96 4.20
238 244 1.667724 AGCGAGCGAGAATGGATTTTG 59.332 47.619 0.00 0.00 0.00 2.44
239 245 1.857602 GCGAGCGAGAATGGATTTTGC 60.858 52.381 0.00 0.00 0.00 3.68
240 246 1.667724 CGAGCGAGAATGGATTTTGCT 59.332 47.619 0.00 0.00 0.00 3.91
241 247 2.096496 CGAGCGAGAATGGATTTTGCTT 59.904 45.455 0.00 0.00 0.00 3.91
242 248 3.309682 CGAGCGAGAATGGATTTTGCTTA 59.690 43.478 0.00 0.00 0.00 3.09
243 249 4.592179 GAGCGAGAATGGATTTTGCTTAC 58.408 43.478 0.00 0.00 0.00 2.34
244 250 4.265073 AGCGAGAATGGATTTTGCTTACT 58.735 39.130 0.00 0.00 0.00 2.24
245 251 5.428253 AGCGAGAATGGATTTTGCTTACTA 58.572 37.500 0.00 0.00 0.00 1.82
246 252 6.058183 AGCGAGAATGGATTTTGCTTACTAT 58.942 36.000 0.00 0.00 0.00 2.12
247 253 6.203723 AGCGAGAATGGATTTTGCTTACTATC 59.796 38.462 0.00 0.00 0.00 2.08
248 254 6.584954 CGAGAATGGATTTTGCTTACTATCG 58.415 40.000 0.00 0.00 0.00 2.92
249 255 6.420903 CGAGAATGGATTTTGCTTACTATCGA 59.579 38.462 0.00 0.00 0.00 3.59
250 256 7.484035 AGAATGGATTTTGCTTACTATCGAC 57.516 36.000 0.00 0.00 0.00 4.20
251 257 5.907197 ATGGATTTTGCTTACTATCGACG 57.093 39.130 0.00 0.00 0.00 5.12
252 258 5.001237 TGGATTTTGCTTACTATCGACGA 57.999 39.130 0.00 0.00 0.00 4.20
253 259 5.412640 TGGATTTTGCTTACTATCGACGAA 58.587 37.500 0.00 0.00 0.00 3.85
254 260 5.518847 TGGATTTTGCTTACTATCGACGAAG 59.481 40.000 0.00 3.62 0.00 3.79
255 261 5.747197 GGATTTTGCTTACTATCGACGAAGA 59.253 40.000 0.00 0.00 0.00 2.87
256 262 6.291690 GGATTTTGCTTACTATCGACGAAGAC 60.292 42.308 0.00 0.00 0.00 3.01
257 263 3.687572 TGCTTACTATCGACGAAGACC 57.312 47.619 0.00 0.00 0.00 3.85
260 266 2.602257 TACTATCGACGAAGACCGGA 57.398 50.000 9.46 0.00 43.93 5.14
276 282 1.215647 GGAGTGCACGTCCCACTAG 59.784 63.158 19.08 0.00 43.17 2.57
277 283 1.215647 GAGTGCACGTCCCACTAGG 59.784 63.158 16.01 0.00 43.17 3.02
278 284 1.228769 AGTGCACGTCCCACTAGGA 60.229 57.895 12.01 0.00 44.91 2.94
292 298 1.282157 ACTAGGAAATGGCTGGTGGAC 59.718 52.381 0.00 0.00 0.00 4.02
301 308 2.579201 CTGGTGGACAGTAGGCGG 59.421 66.667 0.00 0.00 42.42 6.13
311 318 2.818274 GTAGGCGGCAAGGAACGG 60.818 66.667 13.08 0.00 0.00 4.44
332 339 3.252484 GTCATACGCGCCGTGGAC 61.252 66.667 5.73 15.30 41.39 4.02
364 371 4.355720 TGGCAGGCAGAAGCAGGG 62.356 66.667 0.00 0.00 44.61 4.45
367 374 2.435586 CAGGCAGAAGCAGGGTCG 60.436 66.667 0.00 0.00 44.61 4.79
375 382 1.073923 AGAAGCAGGGTCGTCCAAAAT 59.926 47.619 0.04 0.00 38.24 1.82
376 383 2.304761 AGAAGCAGGGTCGTCCAAAATA 59.695 45.455 0.04 0.00 38.24 1.40
377 384 2.403252 AGCAGGGTCGTCCAAAATAG 57.597 50.000 0.04 0.00 38.24 1.73
378 385 1.065418 AGCAGGGTCGTCCAAAATAGG 60.065 52.381 0.04 0.00 38.24 2.57
379 386 1.339727 GCAGGGTCGTCCAAAATAGGT 60.340 52.381 0.04 0.00 38.24 3.08
425 444 3.541093 TTTGACCGTCCGTCCGTCG 62.541 63.158 0.00 0.00 41.18 5.12
545 566 2.502130 GAGAAAGGGGGAAGATTCGAGT 59.498 50.000 0.00 0.00 0.00 4.18
578 599 1.764854 GGGCCATCTCCCTCCGTTA 60.765 63.158 4.39 0.00 43.13 3.18
628 686 2.022918 AGGACTACTAGTCAAGGCCCAT 60.023 50.000 13.20 0.00 46.79 4.00
745 803 2.178984 CTCCCCTTCTATCTCCTCCTGT 59.821 54.545 0.00 0.00 0.00 4.00
746 804 2.178106 TCCCCTTCTATCTCCTCCTGTC 59.822 54.545 0.00 0.00 0.00 3.51
752 810 4.974645 TCTATCTCCTCCTGTCTCTCTC 57.025 50.000 0.00 0.00 0.00 3.20
754 812 3.582998 ATCTCCTCCTGTCTCTCTCTG 57.417 52.381 0.00 0.00 0.00 3.35
756 814 0.033601 TCCTCCTGTCTCTCTCTGCC 60.034 60.000 0.00 0.00 0.00 4.85
778 836 3.429080 CTGCTCTGCCGCTCTCTCC 62.429 68.421 0.00 0.00 0.00 3.71
780 838 2.757508 CTCTGCCGCTCTCTCCCA 60.758 66.667 0.00 0.00 0.00 4.37
794 857 2.326992 TCCCAGGGAGAGGAGAGAG 58.673 63.158 3.01 0.00 0.00 3.20
798 861 1.411501 CCAGGGAGAGGAGAGAGGAAG 60.412 61.905 0.00 0.00 0.00 3.46
819 886 2.505118 GAGTTCGCTCGCTCGCTT 60.505 61.111 0.00 0.00 34.17 4.68
904 986 1.469703 CTGATTGATTCGGTTGCTGCA 59.530 47.619 0.00 0.00 0.00 4.41
1160 1245 3.876300 CCACAGCGGCTACAAGAC 58.124 61.111 0.26 0.00 0.00 3.01
1161 1246 1.741770 CCACAGCGGCTACAAGACC 60.742 63.158 0.26 0.00 0.00 3.85
1162 1247 1.005037 CACAGCGGCTACAAGACCA 60.005 57.895 0.26 0.00 0.00 4.02
1251 1467 3.474570 CTTGGGGCGGAGGAGGAG 61.475 72.222 0.00 0.00 0.00 3.69
1267 1483 1.196012 GGAGGGGGTGTCTAAGTCTG 58.804 60.000 0.00 0.00 0.00 3.51
1270 1486 1.433592 AGGGGGTGTCTAAGTCTGACT 59.566 52.381 4.06 4.06 35.63 3.41
1328 1544 2.463441 TCCTCAAGGAAGTGGTGGG 58.537 57.895 0.00 0.00 42.18 4.61
1550 1766 9.974980 TTTGTTTTTCTTTGTATGTATTCCCTC 57.025 29.630 0.00 0.00 0.00 4.30
1625 1842 3.876198 CGCTACGCAATGGCCACC 61.876 66.667 8.16 0.00 36.38 4.61
1694 1912 1.538512 AGTGAGAGTTTACGCGTGCTA 59.461 47.619 24.59 3.96 0.00 3.49
1699 1917 2.159462 AGAGTTTACGCGTGCTACCTAC 60.159 50.000 24.59 8.82 0.00 3.18
1701 1919 1.916000 GTTTACGCGTGCTACCTACAG 59.084 52.381 24.59 0.00 0.00 2.74
1707 1925 1.332997 GCGTGCTACCTACAGTCGTAT 59.667 52.381 0.00 0.00 0.00 3.06
1791 2012 6.474751 GTCTACCGAAAATACACTCATGGTAC 59.525 42.308 0.00 0.00 0.00 3.34
1937 2158 2.308570 TGGTGCACCTGATTCATTACCT 59.691 45.455 34.75 0.00 36.82 3.08
2034 2269 6.529220 AGGCTGCTATATGGTCTTTCTTTAG 58.471 40.000 0.00 0.00 0.00 1.85
2038 2273 9.364989 GCTGCTATATGGTCTTTCTTTAGATAG 57.635 37.037 0.00 0.00 0.00 2.08
2099 2337 0.106217 CAAGTTGTTGGGTGAGGGGT 60.106 55.000 0.00 0.00 0.00 4.95
2136 2382 5.200483 ACAGAGTGGTTTGGAATCTGAAAA 58.800 37.500 7.45 0.00 39.80 2.29
2168 2414 6.347725 GGAGTTGTTGTCTAACATGACATCAC 60.348 42.308 0.00 1.62 45.56 3.06
2169 2415 6.054941 AGTTGTTGTCTAACATGACATCACA 58.945 36.000 0.00 3.81 45.56 3.58
2263 2517 3.649073 TGAACGTATTGCCCTATCGATG 58.351 45.455 8.54 0.00 0.00 3.84
2279 2533 7.273598 CCCTATCGATGTAAGTGAATTGTATCG 59.726 40.741 8.54 6.90 38.42 2.92
2284 2538 6.344002 CGATGTAAGTGAATTGTATCGACGTC 60.344 42.308 5.18 5.18 38.91 4.34
2301 2557 5.063944 TCGACGTCAGTATACTAAAGACACC 59.936 44.000 17.16 9.76 0.00 4.16
2315 2571 2.065906 GACACCGCCTTCCGCAAAAA 62.066 55.000 0.00 0.00 37.30 1.94
2341 2597 7.266922 TGTATTGAAAGTTAGGTCAACCAAC 57.733 36.000 1.33 4.51 36.62 3.77
2343 2599 6.635030 ATTGAAAGTTAGGTCAACCAACTC 57.365 37.500 13.67 6.94 36.81 3.01
2344 2600 5.367945 TGAAAGTTAGGTCAACCAACTCT 57.632 39.130 13.67 4.59 36.81 3.24
2424 2680 5.679734 ATGCGATCCTTCAATGTTCATAC 57.320 39.130 0.00 0.00 0.00 2.39
2481 2745 3.355626 TCTTCTATCAGGTTCGATGCG 57.644 47.619 0.00 0.00 0.00 4.73
2798 3063 0.847373 TAAAGTTGGGCCAGTGACCA 59.153 50.000 6.23 0.00 34.29 4.02
2799 3064 0.188342 AAAGTTGGGCCAGTGACCAT 59.812 50.000 6.23 0.00 36.48 3.55
2814 3079 1.754234 CCATACCAGCCAAGCCACC 60.754 63.158 0.00 0.00 0.00 4.61
2816 3081 2.297895 ATACCAGCCAAGCCACCGA 61.298 57.895 0.00 0.00 0.00 4.69
2913 3184 4.188462 CGTGTTAGCAGTTCCATCCATTA 58.812 43.478 0.00 0.00 0.00 1.90
2917 3188 7.173218 CGTGTTAGCAGTTCCATCCATTAATAT 59.827 37.037 0.00 0.00 0.00 1.28
2978 3249 9.066892 TCTAGTAGAAAAATGTTCTTGTGCATT 57.933 29.630 0.00 0.00 36.95 3.56
2980 3251 8.579682 AGTAGAAAAATGTTCTTGTGCATTTC 57.420 30.769 0.00 0.00 42.39 2.17
3009 3280 1.141053 AGGAGTTTGCTTGAACCGAGT 59.859 47.619 0.00 0.00 0.00 4.18
3030 3301 4.800554 GCAGCTTGTAGGTGGTGT 57.199 55.556 7.85 0.00 43.49 4.16
3031 3302 3.021451 GCAGCTTGTAGGTGGTGTT 57.979 52.632 7.85 0.00 43.49 3.32
3032 3303 0.875059 GCAGCTTGTAGGTGGTGTTC 59.125 55.000 7.85 0.00 43.49 3.18
3033 3304 1.523758 CAGCTTGTAGGTGGTGTTCC 58.476 55.000 0.00 0.00 39.87 3.62
3034 3305 1.136828 AGCTTGTAGGTGGTGTTCCA 58.863 50.000 0.00 0.00 42.05 3.53
3058 3329 7.606839 CCACAGAATAGATGATGATGCATAGTT 59.393 37.037 0.00 0.00 0.00 2.24
3145 3417 7.944729 AAAATAATCGATGGGAATATGGGAG 57.055 36.000 0.00 0.00 0.00 4.30
3186 3458 3.774766 TGGGGTATAGTGGCTGCTATATG 59.225 47.826 0.00 0.00 36.62 1.78
3207 3479 4.489771 GGTCCCTCGGGGCACATG 62.490 72.222 9.12 0.00 43.94 3.21
3342 3618 6.085573 TCATTATGATTTGCAGTGTGTTTCG 58.914 36.000 0.00 0.00 0.00 3.46
3345 3621 3.951306 TGATTTGCAGTGTGTTTCGAAG 58.049 40.909 0.00 0.00 0.00 3.79
3364 3640 2.440409 AGAGGATGCAGCGAAACATTT 58.560 42.857 0.00 0.00 0.00 2.32
3365 3641 2.163010 AGAGGATGCAGCGAAACATTTG 59.837 45.455 0.00 0.00 0.00 2.32
3389 3665 6.947733 TGGTTGGATTGTCTGAATCATTTAGT 59.052 34.615 0.00 0.00 0.00 2.24
3476 3752 6.659824 TCTGTGATCTTTATTTCCCCTAACC 58.340 40.000 0.00 0.00 0.00 2.85
3482 3758 4.043184 TCTTTATTTCCCCTAACCGTGGTT 59.957 41.667 9.57 9.57 41.65 3.67
3500 3776 5.639506 CGTGGTTTGATGACTATTGACTCTT 59.360 40.000 0.00 0.00 0.00 2.85
3527 3826 8.445275 AATATTCTTTGGTATGTATTGACGCA 57.555 30.769 0.00 0.00 0.00 5.24
3536 3835 6.203915 TGGTATGTATTGACGCATGAATTACC 59.796 38.462 0.00 0.00 0.00 2.85
3806 4106 6.909550 TGAACATTAAACCAGTTTGCCTAT 57.090 33.333 6.03 0.00 34.23 2.57
3835 4138 3.208594 TGAGAGTAATGTGCATCATGGC 58.791 45.455 0.00 0.00 36.81 4.40
3846 4149 2.355444 TGCATCATGGCATTCTTACACG 59.645 45.455 0.00 0.00 39.25 4.49
3851 4154 3.188254 TCATGGCATTCTTACACGTGTTG 59.812 43.478 28.55 19.18 0.00 3.33
3924 4227 0.521291 AATTGGATCGTGTGGTTGCG 59.479 50.000 0.00 0.00 0.00 4.85
3984 4287 7.502060 AGAAGAGAATGTAGATCCCAAAAGA 57.498 36.000 0.00 0.00 0.00 2.52
4008 4311 6.748333 ACAATGGTCTTATTCATGAGTGTG 57.252 37.500 0.13 0.00 0.00 3.82
4252 4556 2.233431 TGCAAATATTCCCCAACAGTGC 59.767 45.455 0.00 0.00 0.00 4.40
4336 4640 4.585879 ACCTTGTACTATTGTTTCGGCAT 58.414 39.130 0.00 0.00 0.00 4.40
5116 5426 6.154363 TGAGAATATTTAACCTTTTGGGCTGG 59.846 38.462 0.00 0.00 46.08 4.85
5177 5487 4.450082 TGTGTGATAACAGATGCGTACT 57.550 40.909 0.00 0.00 0.00 2.73
5178 5488 4.816392 TGTGTGATAACAGATGCGTACTT 58.184 39.130 0.00 0.00 0.00 2.24
5201 5511 3.696898 CACTTCTCTACTACATCACCGC 58.303 50.000 0.00 0.00 0.00 5.68
5216 5526 6.119536 ACATCACCGCCATTAAAATCTTCTA 58.880 36.000 0.00 0.00 0.00 2.10
5264 5574 3.820195 ATAACCCCTTCCCGAAAGTTT 57.180 42.857 0.00 0.00 32.69 2.66
5265 5575 2.464796 AACCCCTTCCCGAAAGTTTT 57.535 45.000 0.00 0.00 32.69 2.43
5266 5576 3.598693 AACCCCTTCCCGAAAGTTTTA 57.401 42.857 0.00 0.00 32.69 1.52
5267 5577 2.867624 ACCCCTTCCCGAAAGTTTTAC 58.132 47.619 0.00 0.00 32.69 2.01
5269 5579 3.652387 ACCCCTTCCCGAAAGTTTTACTA 59.348 43.478 0.00 0.00 32.69 1.82
5270 5580 4.259356 CCCCTTCCCGAAAGTTTTACTAG 58.741 47.826 0.00 0.00 32.69 2.57
5271 5581 4.019950 CCCCTTCCCGAAAGTTTTACTAGA 60.020 45.833 0.00 0.00 32.69 2.43
5273 5583 6.126968 CCCCTTCCCGAAAGTTTTACTAGATA 60.127 42.308 0.00 0.00 32.69 1.98
5274 5584 7.419865 CCCCTTCCCGAAAGTTTTACTAGATAT 60.420 40.741 0.00 0.00 32.69 1.63
5275 5585 7.441458 CCCTTCCCGAAAGTTTTACTAGATATG 59.559 40.741 0.00 0.00 32.69 1.78
5276 5586 8.202137 CCTTCCCGAAAGTTTTACTAGATATGA 58.798 37.037 0.00 0.00 32.69 2.15
5277 5587 9.595823 CTTCCCGAAAGTTTTACTAGATATGAA 57.404 33.333 0.00 0.00 0.00 2.57
5278 5588 8.937634 TCCCGAAAGTTTTACTAGATATGAAC 57.062 34.615 0.00 0.00 0.00 3.18
5279 5589 7.983484 TCCCGAAAGTTTTACTAGATATGAACC 59.017 37.037 0.00 0.00 0.00 3.62
5280 5590 7.985752 CCCGAAAGTTTTACTAGATATGAACCT 59.014 37.037 0.00 0.00 0.00 3.50
5281 5591 9.379791 CCGAAAGTTTTACTAGATATGAACCTT 57.620 33.333 0.00 0.00 0.00 3.50
5382 5692 7.183580 GGATACAACTTATGATGAGCAACTC 57.816 40.000 0.00 0.00 0.00 3.01
5383 5693 6.074088 GGATACAACTTATGATGAGCAACTCG 60.074 42.308 0.00 0.00 32.35 4.18
5384 5694 4.569943 ACAACTTATGATGAGCAACTCGT 58.430 39.130 0.00 0.00 32.35 4.18
5385 5695 4.627467 ACAACTTATGATGAGCAACTCGTC 59.373 41.667 9.41 9.41 44.25 4.20
5392 5702 4.256140 GATGAGCAACTCGTCATTTCTG 57.744 45.455 11.10 0.00 43.66 3.02
5393 5703 3.111853 TGAGCAACTCGTCATTTCTGT 57.888 42.857 0.00 0.00 32.35 3.41
5394 5704 3.466836 TGAGCAACTCGTCATTTCTGTT 58.533 40.909 0.00 0.00 32.35 3.16
5395 5705 4.627058 TGAGCAACTCGTCATTTCTGTTA 58.373 39.130 0.00 0.00 32.35 2.41
5396 5706 5.053811 TGAGCAACTCGTCATTTCTGTTAA 58.946 37.500 0.00 0.00 32.35 2.01
5397 5707 5.050363 TGAGCAACTCGTCATTTCTGTTAAC 60.050 40.000 0.00 0.00 32.35 2.01
5398 5708 4.814234 AGCAACTCGTCATTTCTGTTAACA 59.186 37.500 8.28 8.28 0.00 2.41
5399 5709 5.295787 AGCAACTCGTCATTTCTGTTAACAA 59.704 36.000 10.03 0.00 0.00 2.83
5400 5710 6.017109 AGCAACTCGTCATTTCTGTTAACAAT 60.017 34.615 10.03 0.00 0.00 2.71
5401 5711 7.172532 AGCAACTCGTCATTTCTGTTAACAATA 59.827 33.333 10.03 0.00 0.00 1.90
5402 5712 7.962918 GCAACTCGTCATTTCTGTTAACAATAT 59.037 33.333 10.03 0.72 0.00 1.28
5403 5713 9.825972 CAACTCGTCATTTCTGTTAACAATATT 57.174 29.630 10.03 0.00 0.00 1.28
5404 5714 9.825972 AACTCGTCATTTCTGTTAACAATATTG 57.174 29.630 14.01 14.01 0.00 1.90
5405 5715 9.214957 ACTCGTCATTTCTGTTAACAATATTGA 57.785 29.630 22.16 8.07 0.00 2.57
5410 5720 9.619316 TCATTTCTGTTAACAATATTGAAACGG 57.381 29.630 25.26 25.26 36.37 4.44
5411 5721 9.405587 CATTTCTGTTAACAATATTGAAACGGT 57.594 29.630 27.39 16.68 36.40 4.83
5412 5722 9.974980 ATTTCTGTTAACAATATTGAAACGGTT 57.025 25.926 27.39 18.68 36.40 4.44
5413 5723 8.789881 TTCTGTTAACAATATTGAAACGGTTG 57.210 30.769 27.39 18.72 36.40 3.77
5414 5724 7.932335 TCTGTTAACAATATTGAAACGGTTGT 58.068 30.769 27.39 6.85 36.40 3.32
5415 5725 7.858382 TCTGTTAACAATATTGAAACGGTTGTG 59.142 33.333 27.39 16.33 36.40 3.33
5416 5726 6.418226 TGTTAACAATATTGAAACGGTTGTGC 59.582 34.615 22.16 2.94 33.67 4.57
5417 5727 3.560503 ACAATATTGAAACGGTTGTGCG 58.439 40.909 22.16 0.00 32.30 5.34
5418 5728 3.251245 ACAATATTGAAACGGTTGTGCGA 59.749 39.130 22.16 0.00 32.30 5.10
5419 5729 4.222886 CAATATTGAAACGGTTGTGCGAA 58.777 39.130 10.04 0.00 0.00 4.70
5420 5730 4.695217 ATATTGAAACGGTTGTGCGAAT 57.305 36.364 0.00 0.00 0.00 3.34
5421 5731 2.112475 TTGAAACGGTTGTGCGAATG 57.888 45.000 0.00 0.00 0.00 2.67
5422 5732 1.018148 TGAAACGGTTGTGCGAATGT 58.982 45.000 0.00 0.00 0.00 2.71
5423 5733 2.210961 TGAAACGGTTGTGCGAATGTA 58.789 42.857 0.00 0.00 0.00 2.29
5424 5734 2.032722 TGAAACGGTTGTGCGAATGTAC 60.033 45.455 0.00 0.00 0.00 2.90
5425 5735 0.509499 AACGGTTGTGCGAATGTACG 59.491 50.000 0.00 0.00 32.77 3.67
5437 5747 4.833469 CGAATGTACGCACATGAACTAA 57.167 40.909 1.08 0.00 44.83 2.24
5438 5748 4.811208 CGAATGTACGCACATGAACTAAG 58.189 43.478 1.08 0.00 44.83 2.18
5439 5749 4.326278 CGAATGTACGCACATGAACTAAGT 59.674 41.667 1.08 0.00 44.83 2.24
5515 5825 4.641396 CACATGAACTAAGTTCTGGACCA 58.359 43.478 0.00 0.00 42.39 4.02
5556 5866 0.736325 CTGGCCGAGACCAACGTTAG 60.736 60.000 0.00 0.00 39.86 2.34
5568 5878 4.952460 ACCAACGTTAGAAAGAACTGCTA 58.048 39.130 0.00 0.00 0.00 3.49
5593 5903 8.773404 AGTAATAACTTTATCTGTTTCAGCGT 57.227 30.769 0.00 0.00 29.00 5.07
5594 5904 9.216117 AGTAATAACTTTATCTGTTTCAGCGTT 57.784 29.630 0.00 0.00 29.00 4.84
5595 5905 9.474249 GTAATAACTTTATCTGTTTCAGCGTTC 57.526 33.333 0.00 0.00 0.00 3.95
5596 5906 7.667043 ATAACTTTATCTGTTTCAGCGTTCA 57.333 32.000 0.00 0.00 0.00 3.18
5597 5907 6.560253 AACTTTATCTGTTTCAGCGTTCAT 57.440 33.333 0.00 0.00 0.00 2.57
5598 5908 6.560253 ACTTTATCTGTTTCAGCGTTCATT 57.440 33.333 0.00 0.00 0.00 2.57
5599 5909 6.373779 ACTTTATCTGTTTCAGCGTTCATTG 58.626 36.000 0.00 0.00 0.00 2.82
5600 5910 2.686558 TCTGTTTCAGCGTTCATTGC 57.313 45.000 0.00 0.00 0.00 3.56
5601 5911 1.946081 TCTGTTTCAGCGTTCATTGCA 59.054 42.857 0.00 0.00 33.85 4.08
5602 5912 2.046313 CTGTTTCAGCGTTCATTGCAC 58.954 47.619 0.00 0.00 33.85 4.57
5603 5913 1.403323 TGTTTCAGCGTTCATTGCACA 59.597 42.857 0.00 0.00 33.85 4.57
5604 5914 2.159324 TGTTTCAGCGTTCATTGCACAA 60.159 40.909 0.00 0.00 33.85 3.33
5605 5915 2.118228 TTCAGCGTTCATTGCACAAC 57.882 45.000 0.00 0.00 33.85 3.32
5606 5916 1.020437 TCAGCGTTCATTGCACAACA 58.980 45.000 0.00 0.00 33.85 3.33
5607 5917 1.608109 TCAGCGTTCATTGCACAACAT 59.392 42.857 0.00 0.00 33.85 2.71
5608 5918 2.034432 TCAGCGTTCATTGCACAACATT 59.966 40.909 0.00 0.00 33.85 2.71
5609 5919 2.796031 CAGCGTTCATTGCACAACATTT 59.204 40.909 0.00 0.00 33.85 2.32
5610 5920 2.796031 AGCGTTCATTGCACAACATTTG 59.204 40.909 0.00 0.00 33.85 2.32
5611 5921 2.539274 GCGTTCATTGCACAACATTTGT 59.461 40.909 0.00 0.00 46.75 2.83
5612 5922 3.361917 GCGTTCATTGCACAACATTTGTC 60.362 43.478 0.00 0.00 43.23 3.18
5613 5923 3.795639 CGTTCATTGCACAACATTTGTCA 59.204 39.130 0.00 0.00 43.23 3.58
5614 5924 4.445052 CGTTCATTGCACAACATTTGTCAT 59.555 37.500 0.00 0.00 43.23 3.06
5615 5925 5.050904 CGTTCATTGCACAACATTTGTCATT 60.051 36.000 0.00 0.00 43.23 2.57
5616 5926 6.509837 CGTTCATTGCACAACATTTGTCATTT 60.510 34.615 0.00 0.00 43.23 2.32
5617 5927 7.306457 CGTTCATTGCACAACATTTGTCATTTA 60.306 33.333 0.00 0.00 43.23 1.40
5618 5928 8.333908 GTTCATTGCACAACATTTGTCATTTAA 58.666 29.630 0.00 0.00 43.23 1.52
5619 5929 8.429493 TCATTGCACAACATTTGTCATTTAAA 57.571 26.923 0.00 0.00 43.23 1.52
5620 5930 8.886719 TCATTGCACAACATTTGTCATTTAAAA 58.113 25.926 0.00 0.00 43.23 1.52
5621 5931 9.666626 CATTGCACAACATTTGTCATTTAAAAT 57.333 25.926 0.00 0.00 43.23 1.82
5625 5935 9.264782 GCACAACATTTGTCATTTAAAATATGC 57.735 29.630 0.00 0.00 43.23 3.14
5626 5936 9.757859 CACAACATTTGTCATTTAAAATATGCC 57.242 29.630 0.00 0.00 43.23 4.40
5627 5937 9.499479 ACAACATTTGTCATTTAAAATATGCCA 57.501 25.926 0.00 0.00 40.56 4.92
5630 5940 9.887629 ACATTTGTCATTTAAAATATGCCATCA 57.112 25.926 0.00 0.00 0.00 3.07
5634 5944 9.979578 TTGTCATTTAAAATATGCCATCATACC 57.020 29.630 0.00 0.00 37.94 2.73
5635 5945 9.140874 TGTCATTTAAAATATGCCATCATACCA 57.859 29.630 0.00 0.00 37.94 3.25
5636 5946 9.979578 GTCATTTAAAATATGCCATCATACCAA 57.020 29.630 0.00 0.00 37.94 3.67
5638 5948 9.985730 CATTTAAAATATGCCATCATACCAAGT 57.014 29.630 0.00 0.00 37.94 3.16
5642 5952 8.532186 AAAATATGCCATCATACCAAGTAACA 57.468 30.769 0.00 0.00 37.94 2.41
5643 5953 8.532186 AAATATGCCATCATACCAAGTAACAA 57.468 30.769 0.00 0.00 37.94 2.83
5644 5954 8.710749 AATATGCCATCATACCAAGTAACAAT 57.289 30.769 0.00 0.00 37.94 2.71
5645 5955 6.639632 ATGCCATCATACCAAGTAACAATC 57.360 37.500 0.00 0.00 0.00 2.67
5646 5956 5.504853 TGCCATCATACCAAGTAACAATCA 58.495 37.500 0.00 0.00 0.00 2.57
5647 5957 6.128486 TGCCATCATACCAAGTAACAATCAT 58.872 36.000 0.00 0.00 0.00 2.45
5648 5958 6.039605 TGCCATCATACCAAGTAACAATCATG 59.960 38.462 0.00 0.00 0.00 3.07
5694 6004 2.604914 CGTGTCCTTCCTGATCAAATCG 59.395 50.000 0.00 0.00 0.00 3.34
5696 6006 3.619038 GTGTCCTTCCTGATCAAATCGAC 59.381 47.826 0.00 0.11 0.00 4.20
5722 6032 9.188588 CATGGTGAAATGAGAATTATTATGTGC 57.811 33.333 0.00 0.00 0.00 4.57
5723 6033 8.523915 TGGTGAAATGAGAATTATTATGTGCT 57.476 30.769 0.00 0.00 0.00 4.40
5725 6035 8.623903 GGTGAAATGAGAATTATTATGTGCTCA 58.376 33.333 0.00 0.00 36.88 4.26
5726 6036 9.443283 GTGAAATGAGAATTATTATGTGCTCAC 57.557 33.333 0.00 0.00 35.49 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 45 0.877071 TTTCTCGTACCGTCTCGCTT 59.123 50.000 0.00 0.00 0.00 4.68
75 79 4.415150 ATGGGCACGCACAGGAGG 62.415 66.667 0.00 0.00 30.39 4.30
109 113 4.939368 TGGTTGGTTGGACGGGCG 62.939 66.667 0.00 0.00 0.00 6.13
123 127 0.030399 GGGTGATAGGGTAGGGTGGT 60.030 60.000 0.00 0.00 0.00 4.16
139 145 6.890268 GGTAATTTTCTGAACTGATTAGGGGT 59.110 38.462 0.00 0.00 0.00 4.95
141 147 7.148069 GGTGGTAATTTTCTGAACTGATTAGGG 60.148 40.741 0.00 0.00 0.00 3.53
173 179 9.331282 CCATGGTGGTAACTTTTTATTTTGAAA 57.669 29.630 2.57 0.00 31.35 2.69
174 180 8.705594 TCCATGGTGGTAACTTTTTATTTTGAA 58.294 29.630 12.58 0.00 39.03 2.69
175 181 8.251383 TCCATGGTGGTAACTTTTTATTTTGA 57.749 30.769 12.58 0.00 39.03 2.69
176 182 8.894768 TTCCATGGTGGTAACTTTTTATTTTG 57.105 30.769 12.58 0.00 39.03 2.44
177 183 9.907229 TTTTCCATGGTGGTAACTTTTTATTTT 57.093 25.926 12.58 0.00 39.03 1.82
179 185 9.500785 CATTTTCCATGGTGGTAACTTTTTATT 57.499 29.630 12.58 0.00 39.03 1.40
180 186 8.875168 TCATTTTCCATGGTGGTAACTTTTTAT 58.125 29.630 12.58 0.00 39.03 1.40
181 187 8.251383 TCATTTTCCATGGTGGTAACTTTTTA 57.749 30.769 12.58 0.00 39.03 1.52
182 188 7.130681 TCATTTTCCATGGTGGTAACTTTTT 57.869 32.000 12.58 0.00 39.03 1.94
183 189 6.739331 TCATTTTCCATGGTGGTAACTTTT 57.261 33.333 12.58 0.00 39.03 2.27
184 190 6.725834 AGATCATTTTCCATGGTGGTAACTTT 59.274 34.615 12.58 0.00 39.03 2.66
185 191 6.256053 AGATCATTTTCCATGGTGGTAACTT 58.744 36.000 12.58 0.00 39.03 2.66
186 192 5.831103 AGATCATTTTCCATGGTGGTAACT 58.169 37.500 12.58 0.87 39.03 2.24
187 193 5.067805 GGAGATCATTTTCCATGGTGGTAAC 59.932 44.000 12.58 0.00 39.03 2.50
188 194 5.200483 GGAGATCATTTTCCATGGTGGTAA 58.800 41.667 12.58 2.50 39.03 2.85
189 195 4.386312 GGGAGATCATTTTCCATGGTGGTA 60.386 45.833 12.58 0.00 39.03 3.25
190 196 3.628257 GGGAGATCATTTTCCATGGTGGT 60.628 47.826 12.58 0.00 39.03 4.16
191 197 2.961062 GGGAGATCATTTTCCATGGTGG 59.039 50.000 12.58 0.00 39.43 4.61
192 198 3.887716 GAGGGAGATCATTTTCCATGGTG 59.112 47.826 12.58 2.27 35.09 4.17
193 199 3.117360 GGAGGGAGATCATTTTCCATGGT 60.117 47.826 12.58 0.00 35.09 3.55
201 207 1.415659 CGCTCTGGAGGGAGATCATTT 59.584 52.381 8.68 0.00 43.22 2.32
205 211 4.589046 TCGCTCTGGAGGGAGATC 57.411 61.111 12.30 0.00 44.07 2.75
210 216 3.898509 CTCGCTCGCTCTGGAGGG 61.899 72.222 8.14 8.14 45.43 4.30
211 217 1.733402 ATTCTCGCTCGCTCTGGAGG 61.733 60.000 0.00 0.00 34.56 4.30
212 218 0.594540 CATTCTCGCTCGCTCTGGAG 60.595 60.000 0.00 0.00 37.11 3.86
213 219 1.435105 CATTCTCGCTCGCTCTGGA 59.565 57.895 0.00 0.00 0.00 3.86
238 244 2.601741 CCGGTCTTCGTCGATAGTAAGC 60.602 54.545 0.00 0.00 37.11 3.09
239 245 2.868583 TCCGGTCTTCGTCGATAGTAAG 59.131 50.000 0.00 0.00 37.11 2.34
240 246 2.868583 CTCCGGTCTTCGTCGATAGTAA 59.131 50.000 0.00 0.00 37.11 2.24
241 247 2.159043 ACTCCGGTCTTCGTCGATAGTA 60.159 50.000 0.00 0.00 37.11 1.82
242 248 1.297664 CTCCGGTCTTCGTCGATAGT 58.702 55.000 0.00 0.00 37.11 2.12
243 249 1.003759 CACTCCGGTCTTCGTCGATAG 60.004 57.143 0.00 0.00 37.11 2.08
244 250 1.012086 CACTCCGGTCTTCGTCGATA 58.988 55.000 0.00 0.00 37.11 2.92
245 251 1.801332 CACTCCGGTCTTCGTCGAT 59.199 57.895 0.00 0.00 37.11 3.59
246 252 2.974489 GCACTCCGGTCTTCGTCGA 61.974 63.158 0.00 0.00 37.11 4.20
247 253 2.504244 GCACTCCGGTCTTCGTCG 60.504 66.667 0.00 0.00 37.11 5.12
248 254 1.733399 GTGCACTCCGGTCTTCGTC 60.733 63.158 10.32 0.00 37.11 4.20
249 255 2.338984 GTGCACTCCGGTCTTCGT 59.661 61.111 10.32 0.00 37.11 3.85
250 256 2.805353 CGTGCACTCCGGTCTTCG 60.805 66.667 16.19 0.00 38.88 3.79
251 257 1.733399 GACGTGCACTCCGGTCTTC 60.733 63.158 16.19 0.00 0.00 2.87
252 258 2.338984 GACGTGCACTCCGGTCTT 59.661 61.111 16.19 0.00 0.00 3.01
253 259 3.681835 GGACGTGCACTCCGGTCT 61.682 66.667 16.19 0.00 0.00 3.85
254 260 4.736896 GGGACGTGCACTCCGGTC 62.737 72.222 21.52 17.47 0.00 4.79
257 263 2.543687 CTAGTGGGACGTGCACTCCG 62.544 65.000 21.52 10.62 0.00 4.63
260 266 0.830444 TTCCTAGTGGGACGTGCACT 60.830 55.000 16.19 12.70 45.03 4.40
276 282 0.251341 ACTGTCCACCAGCCATTTCC 60.251 55.000 0.00 0.00 45.68 3.13
277 283 2.359900 CTACTGTCCACCAGCCATTTC 58.640 52.381 0.00 0.00 45.68 2.17
278 284 1.004745 CCTACTGTCCACCAGCCATTT 59.995 52.381 0.00 0.00 45.68 2.32
279 285 0.620556 CCTACTGTCCACCAGCCATT 59.379 55.000 0.00 0.00 45.68 3.16
292 298 2.100631 CGTTCCTTGCCGCCTACTG 61.101 63.158 0.00 0.00 0.00 2.74
294 300 2.818274 CCGTTCCTTGCCGCCTAC 60.818 66.667 0.00 0.00 0.00 3.18
364 371 1.395954 GGCGAACCTATTTTGGACGAC 59.604 52.381 0.00 0.00 34.62 4.34
367 374 1.395954 GACGGCGAACCTATTTTGGAC 59.604 52.381 16.62 0.00 0.00 4.02
375 382 2.967397 CAGGTGACGGCGAACCTA 59.033 61.111 28.97 4.37 45.21 3.08
460 479 1.157585 CTCACTCTCGTCGGTTGAGA 58.842 55.000 14.39 2.93 40.07 3.27
659 717 0.813821 GAAGATGACAAGCAAGGGGC 59.186 55.000 0.00 0.00 45.30 5.80
660 718 1.467920 GGAAGATGACAAGCAAGGGG 58.532 55.000 0.00 0.00 0.00 4.79
745 803 1.381056 GCAGAGGGGCAGAGAGAGA 60.381 63.158 0.00 0.00 0.00 3.10
746 804 1.381599 AGCAGAGGGGCAGAGAGAG 60.382 63.158 0.00 0.00 35.83 3.20
752 810 4.486503 GGCAGAGCAGAGGGGCAG 62.487 72.222 0.00 0.00 35.83 4.85
756 814 4.527583 GAGCGGCAGAGCAGAGGG 62.528 72.222 1.45 0.00 40.15 4.30
778 836 0.633921 TTCCTCTCTCCTCTCCCTGG 59.366 60.000 0.00 0.00 0.00 4.45
780 838 0.933700 CCTTCCTCTCTCCTCTCCCT 59.066 60.000 0.00 0.00 0.00 4.20
794 857 1.807573 CGAGCGAACTCTGCCTTCC 60.808 63.158 0.00 0.00 41.09 3.46
798 861 2.883253 GAGCGAGCGAACTCTGCC 60.883 66.667 0.00 0.00 40.81 4.85
819 886 1.617018 CGGGGAATCTGAGGAGTGCA 61.617 60.000 0.00 0.00 29.67 4.57
822 889 2.066999 GGCGGGGAATCTGAGGAGT 61.067 63.158 0.00 0.00 0.00 3.85
1158 1243 2.125106 GGTGTGGCGGAGATGGTC 60.125 66.667 0.00 0.00 0.00 4.02
1160 1245 4.838152 CCGGTGTGGCGGAGATGG 62.838 72.222 0.00 0.00 0.00 3.51
1247 1463 1.094269 AGACTTAGACACCCCCTCCT 58.906 55.000 0.00 0.00 0.00 3.69
1248 1464 1.196012 CAGACTTAGACACCCCCTCC 58.804 60.000 0.00 0.00 0.00 4.30
1249 1465 1.826096 GTCAGACTTAGACACCCCCTC 59.174 57.143 0.00 0.00 36.06 4.30
1250 1466 1.433592 AGTCAGACTTAGACACCCCCT 59.566 52.381 0.00 0.00 38.46 4.79
1251 1467 1.826096 GAGTCAGACTTAGACACCCCC 59.174 57.143 4.05 0.00 38.46 5.40
1252 1468 1.826096 GGAGTCAGACTTAGACACCCC 59.174 57.143 4.05 0.00 39.79 4.95
1314 1530 0.251341 CTTCCCCCACCACTTCCTTG 60.251 60.000 0.00 0.00 0.00 3.61
1340 1556 0.529992 GTACATGTCGCAGGTAGCCC 60.530 60.000 0.00 0.00 41.38 5.19
1625 1842 5.278604 CACCTTTTTCTTTAGAACCAACCG 58.721 41.667 0.00 0.00 33.13 4.44
1694 1912 0.458669 CGGCCAATACGACTGTAGGT 59.541 55.000 2.24 0.00 33.17 3.08
1699 1917 2.173669 CAGCCGGCCAATACGACTG 61.174 63.158 26.15 7.59 35.64 3.51
1701 1919 2.862674 TTCCAGCCGGCCAATACGAC 62.863 60.000 26.15 0.00 0.00 4.34
1791 2012 3.009026 TCATCGTCATGAACACCCATTG 58.991 45.455 0.00 0.00 35.99 2.82
1899 2120 5.049954 GTGCACCAAACGTTTTCTCTGTATA 60.050 40.000 11.66 0.00 0.00 1.47
1900 2121 3.880490 TGCACCAAACGTTTTCTCTGTAT 59.120 39.130 11.66 0.00 0.00 2.29
1937 2158 8.514330 ACCAATCTTAGTTAACAAGAAACACA 57.486 30.769 18.18 2.68 35.73 3.72
2099 2337 3.117246 CCACTCTGTACCATACCCCTCTA 60.117 52.174 0.00 0.00 0.00 2.43
2263 2517 5.798934 ACTGACGTCGATACAATTCACTTAC 59.201 40.000 11.62 0.00 0.00 2.34
2279 2533 5.261661 CGGTGTCTTTAGTATACTGACGTC 58.738 45.833 15.90 9.11 0.00 4.34
2284 2538 4.650754 AGGCGGTGTCTTTAGTATACTG 57.349 45.455 15.90 0.00 0.00 2.74
2315 2571 8.357402 GTTGGTTGACCTAACTTTCAATACATT 58.643 33.333 1.34 0.00 39.31 2.71
2316 2572 7.724061 AGTTGGTTGACCTAACTTTCAATACAT 59.276 33.333 1.34 0.00 39.31 2.29
2424 2680 4.815308 TCAGCACCAAAAACCATCAAATTG 59.185 37.500 0.00 0.00 0.00 2.32
2462 2726 3.355626 TCGCATCGAACCTGATAGAAG 57.644 47.619 0.00 0.00 31.06 2.85
2798 3063 2.257409 CTCGGTGGCTTGGCTGGTAT 62.257 60.000 0.00 0.00 0.00 2.73
2799 3064 2.925706 TCGGTGGCTTGGCTGGTA 60.926 61.111 0.00 0.00 0.00 3.25
2913 3184 8.650143 ACTCATGTTTGTAAGGGTCAAATATT 57.350 30.769 0.00 0.00 35.54 1.28
2917 3188 6.783708 AAACTCATGTTTGTAAGGGTCAAA 57.216 33.333 0.00 0.00 43.90 2.69
2978 3249 1.945819 GCAAACTCCTGCATCTCCGAA 60.946 52.381 0.00 0.00 42.17 4.30
2980 3251 0.392193 AGCAAACTCCTGCATCTCCG 60.392 55.000 0.00 0.00 45.18 4.63
3009 3280 1.302752 CCACCTACAAGCTGCTGCA 60.303 57.895 18.42 0.88 42.74 4.41
3030 3301 5.932455 TGCATCATCATCTATTCTGTGGAA 58.068 37.500 0.00 0.00 35.78 3.53
3031 3302 5.556006 TGCATCATCATCTATTCTGTGGA 57.444 39.130 0.00 0.00 0.00 4.02
3032 3303 7.104290 ACTATGCATCATCATCTATTCTGTGG 58.896 38.462 0.19 0.00 0.00 4.17
3033 3304 8.549338 AACTATGCATCATCATCTATTCTGTG 57.451 34.615 0.19 0.00 0.00 3.66
3034 3305 8.373220 TGAACTATGCATCATCATCTATTCTGT 58.627 33.333 0.19 0.00 0.00 3.41
3039 3310 6.928520 TCGTGAACTATGCATCATCATCTAT 58.071 36.000 0.19 0.00 0.00 1.98
3130 3402 5.014123 TCACATAACCTCCCATATTCCCATC 59.986 44.000 0.00 0.00 0.00 3.51
3137 3409 4.044571 CCCCATTCACATAACCTCCCATAT 59.955 45.833 0.00 0.00 0.00 1.78
3145 3417 3.895041 CCCATAACCCCATTCACATAACC 59.105 47.826 0.00 0.00 0.00 2.85
3207 3479 1.902508 TGGGTCAGGACAGTCTCAATC 59.097 52.381 0.00 0.00 0.00 2.67
3333 3609 2.143122 TGCATCCTCTTCGAAACACAC 58.857 47.619 0.00 0.00 0.00 3.82
3334 3610 2.416747 CTGCATCCTCTTCGAAACACA 58.583 47.619 0.00 0.00 0.00 3.72
3342 3618 1.442769 TGTTTCGCTGCATCCTCTTC 58.557 50.000 0.00 0.00 0.00 2.87
3345 3621 2.523015 CAAATGTTTCGCTGCATCCTC 58.477 47.619 0.00 0.00 0.00 3.71
3364 3640 6.947733 ACTAAATGATTCAGACAATCCAACCA 59.052 34.615 0.00 0.00 0.00 3.67
3365 3641 7.396540 ACTAAATGATTCAGACAATCCAACC 57.603 36.000 0.00 0.00 0.00 3.77
3476 3752 5.171476 AGAGTCAATAGTCATCAAACCACG 58.829 41.667 0.00 0.00 0.00 4.94
3500 3776 8.556194 GCGTCAATACATACCAAAGAATATTCA 58.444 33.333 17.56 0.00 0.00 2.57
3510 3809 6.691754 AATTCATGCGTCAATACATACCAA 57.308 33.333 0.00 0.00 0.00 3.67
3512 3811 6.426937 AGGTAATTCATGCGTCAATACATACC 59.573 38.462 0.00 0.00 0.00 2.73
3519 3818 3.884895 TCCAGGTAATTCATGCGTCAAT 58.115 40.909 0.00 0.00 0.00 2.57
3525 3824 6.044682 CCTGAAAATTCCAGGTAATTCATGC 58.955 40.000 15.20 0.00 44.66 4.06
3536 3835 5.183713 TGCATTGTACTCCTGAAAATTCCAG 59.816 40.000 0.00 1.89 0.00 3.86
3777 4077 7.151976 GCAAACTGGTTTAATGTTCATAAGGT 58.848 34.615 0.00 0.00 0.00 3.50
3806 4106 3.072330 TGCACATTACTCTCAAGGTTGGA 59.928 43.478 0.00 0.00 0.00 3.53
3835 4138 6.255215 AGTCAAAACAACACGTGTAAGAATG 58.745 36.000 23.69 18.20 40.60 2.67
3846 4149 2.949644 AGGCCTGTAGTCAAAACAACAC 59.050 45.455 3.11 0.00 0.00 3.32
3851 4154 1.798813 CGTCAGGCCTGTAGTCAAAAC 59.201 52.381 31.58 18.40 0.00 2.43
3924 4227 1.598601 GTCTCGAGGATCTGTCGGTAC 59.401 57.143 13.56 10.88 38.02 3.34
3984 4287 6.716628 ACACACTCATGAATAAGACCATTGTT 59.283 34.615 0.00 0.00 0.00 2.83
4008 4311 4.508124 GCTTACTGCATATGTACTGGTGAC 59.492 45.833 4.29 0.00 42.31 3.67
4051 4354 5.824097 TGCAGCAGATATGAATTATGTGTGT 59.176 36.000 0.00 0.00 34.75 3.72
4082 4385 5.878406 TCTAGGATCACCCAAAGAATCTC 57.122 43.478 0.00 0.00 37.41 2.75
4252 4556 7.307632 CCAACATCTTCGCTTTCATCCTAATAG 60.308 40.741 0.00 0.00 0.00 1.73
4336 4640 7.202066 GCCTGGTACCCTTATACTAAGAATTCA 60.202 40.741 10.07 0.00 0.00 2.57
4359 4663 2.821969 GTCAACCATTGTTCATCAGCCT 59.178 45.455 0.00 0.00 30.42 4.58
4639 4943 2.123897 AACTTGCGTGGGTTGGCT 60.124 55.556 0.00 0.00 0.00 4.75
4794 5104 3.782656 AACGGGAACTACCAGATTTGT 57.217 42.857 0.00 0.00 41.20 2.83
5177 5487 4.380550 CGGTGATGTAGTAGAGAAGTGCAA 60.381 45.833 0.00 0.00 0.00 4.08
5178 5488 3.128764 CGGTGATGTAGTAGAGAAGTGCA 59.871 47.826 0.00 0.00 0.00 4.57
5201 5511 7.531871 CGCATTCGACATAGAAGATTTTAATGG 59.468 37.037 0.00 0.00 38.10 3.16
5264 5574 8.540388 ACTGAGCAAAAGGTTCATATCTAGTAA 58.460 33.333 0.00 0.00 36.07 2.24
5265 5575 7.981789 CACTGAGCAAAAGGTTCATATCTAGTA 59.018 37.037 0.00 0.00 36.07 1.82
5266 5576 6.820656 CACTGAGCAAAAGGTTCATATCTAGT 59.179 38.462 0.00 0.00 36.07 2.57
5267 5577 6.238320 GCACTGAGCAAAAGGTTCATATCTAG 60.238 42.308 0.00 0.00 44.79 2.43
5269 5579 4.397417 GCACTGAGCAAAAGGTTCATATCT 59.603 41.667 0.00 0.00 44.79 1.98
5270 5580 4.666237 GCACTGAGCAAAAGGTTCATATC 58.334 43.478 0.00 0.00 44.79 1.63
5271 5581 3.127548 CGCACTGAGCAAAAGGTTCATAT 59.872 43.478 0.00 0.00 46.13 1.78
5273 5583 1.267806 CGCACTGAGCAAAAGGTTCAT 59.732 47.619 0.00 0.00 46.13 2.57
5274 5584 0.662619 CGCACTGAGCAAAAGGTTCA 59.337 50.000 0.00 0.00 46.13 3.18
5275 5585 0.661483 GCGCACTGAGCAAAAGGTTC 60.661 55.000 0.30 0.00 46.13 3.62
5276 5586 1.103398 AGCGCACTGAGCAAAAGGTT 61.103 50.000 11.47 0.00 46.13 3.50
5277 5587 0.250295 TAGCGCACTGAGCAAAAGGT 60.250 50.000 11.47 0.00 46.13 3.50
5278 5588 0.166814 GTAGCGCACTGAGCAAAAGG 59.833 55.000 11.47 0.00 46.13 3.11
5279 5589 0.867746 TGTAGCGCACTGAGCAAAAG 59.132 50.000 11.47 0.00 46.13 2.27
5280 5590 0.586319 GTGTAGCGCACTGAGCAAAA 59.414 50.000 11.47 0.00 46.13 2.44
5281 5591 1.227999 GGTGTAGCGCACTGAGCAAA 61.228 55.000 11.47 0.00 46.86 3.68
5282 5592 1.667830 GGTGTAGCGCACTGAGCAA 60.668 57.895 11.47 0.00 46.86 3.91
5283 5593 2.048222 GGTGTAGCGCACTGAGCA 60.048 61.111 11.47 0.00 46.86 4.26
5284 5594 1.374758 AAGGTGTAGCGCACTGAGC 60.375 57.895 11.47 0.00 46.86 4.26
5285 5595 1.016130 CCAAGGTGTAGCGCACTGAG 61.016 60.000 11.47 0.00 46.86 3.35
5370 5680 3.681417 CAGAAATGACGAGTTGCTCATCA 59.319 43.478 0.00 0.00 37.12 3.07
5371 5681 3.681897 ACAGAAATGACGAGTTGCTCATC 59.318 43.478 0.00 0.00 0.00 2.92
5372 5682 3.668447 ACAGAAATGACGAGTTGCTCAT 58.332 40.909 0.00 0.00 0.00 2.90
5373 5683 3.111853 ACAGAAATGACGAGTTGCTCA 57.888 42.857 0.00 0.00 0.00 4.26
5374 5684 5.050363 TGTTAACAGAAATGACGAGTTGCTC 60.050 40.000 3.59 0.00 0.00 4.26
5375 5685 4.814234 TGTTAACAGAAATGACGAGTTGCT 59.186 37.500 3.59 0.00 0.00 3.91
5376 5686 5.090652 TGTTAACAGAAATGACGAGTTGC 57.909 39.130 3.59 0.00 0.00 4.17
5377 5687 9.825972 AATATTGTTAACAGAAATGACGAGTTG 57.174 29.630 8.56 0.00 0.00 3.16
5378 5688 9.825972 CAATATTGTTAACAGAAATGACGAGTT 57.174 29.630 8.56 0.00 0.00 3.01
5379 5689 9.214957 TCAATATTGTTAACAGAAATGACGAGT 57.785 29.630 14.97 0.00 0.00 4.18
5384 5694 9.619316 CCGTTTCAATATTGTTAACAGAAATGA 57.381 29.630 25.84 18.87 34.25 2.57
5385 5695 9.405587 ACCGTTTCAATATTGTTAACAGAAATG 57.594 29.630 21.34 21.34 32.93 2.32
5386 5696 9.974980 AACCGTTTCAATATTGTTAACAGAAAT 57.025 25.926 23.25 9.10 0.00 2.17
5387 5697 9.239002 CAACCGTTTCAATATTGTTAACAGAAA 57.761 29.630 23.25 11.35 0.00 2.52
5388 5698 8.407064 ACAACCGTTTCAATATTGTTAACAGAA 58.593 29.630 23.25 5.82 29.30 3.02
5389 5699 7.858382 CACAACCGTTTCAATATTGTTAACAGA 59.142 33.333 23.25 1.55 31.25 3.41
5390 5700 7.358023 GCACAACCGTTTCAATATTGTTAACAG 60.358 37.037 23.25 18.39 31.25 3.16
5391 5701 6.418226 GCACAACCGTTTCAATATTGTTAACA 59.582 34.615 23.25 3.59 31.25 2.41
5392 5702 6.398101 CGCACAACCGTTTCAATATTGTTAAC 60.398 38.462 14.97 16.96 31.25 2.01
5393 5703 5.625721 CGCACAACCGTTTCAATATTGTTAA 59.374 36.000 14.97 8.20 31.25 2.01
5394 5704 5.049612 TCGCACAACCGTTTCAATATTGTTA 60.050 36.000 14.97 2.51 31.25 2.41
5395 5705 3.978217 CGCACAACCGTTTCAATATTGTT 59.022 39.130 14.97 0.00 31.25 2.83
5396 5706 3.251245 TCGCACAACCGTTTCAATATTGT 59.749 39.130 14.97 0.00 33.86 2.71
5397 5707 3.816091 TCGCACAACCGTTTCAATATTG 58.184 40.909 9.29 9.29 0.00 1.90
5398 5708 4.491234 TTCGCACAACCGTTTCAATATT 57.509 36.364 0.00 0.00 0.00 1.28
5399 5709 4.083003 ACATTCGCACAACCGTTTCAATAT 60.083 37.500 0.00 0.00 0.00 1.28
5400 5710 3.251245 ACATTCGCACAACCGTTTCAATA 59.749 39.130 0.00 0.00 0.00 1.90
5401 5711 2.034053 ACATTCGCACAACCGTTTCAAT 59.966 40.909 0.00 0.00 0.00 2.57
5402 5712 1.402259 ACATTCGCACAACCGTTTCAA 59.598 42.857 0.00 0.00 0.00 2.69
5403 5713 1.018148 ACATTCGCACAACCGTTTCA 58.982 45.000 0.00 0.00 0.00 2.69
5404 5714 2.567067 GTACATTCGCACAACCGTTTC 58.433 47.619 0.00 0.00 0.00 2.78
5405 5715 1.070443 CGTACATTCGCACAACCGTTT 60.070 47.619 0.00 0.00 0.00 3.60
5406 5716 0.509499 CGTACATTCGCACAACCGTT 59.491 50.000 0.00 0.00 0.00 4.44
5407 5717 2.146954 CGTACATTCGCACAACCGT 58.853 52.632 0.00 0.00 0.00 4.83
5416 5726 4.326278 ACTTAGTTCATGTGCGTACATTCG 59.674 41.667 16.99 7.00 45.01 3.34
5417 5727 5.779806 ACTTAGTTCATGTGCGTACATTC 57.220 39.130 16.99 10.17 45.01 2.67
5418 5728 5.699001 TCAACTTAGTTCATGTGCGTACATT 59.301 36.000 16.99 5.11 45.01 2.71
5420 5730 4.623002 TCAACTTAGTTCATGTGCGTACA 58.377 39.130 9.28 9.28 41.89 2.90
5421 5731 4.434330 GCTCAACTTAGTTCATGTGCGTAC 60.434 45.833 0.00 0.00 0.00 3.67
5422 5732 3.678072 GCTCAACTTAGTTCATGTGCGTA 59.322 43.478 0.00 0.00 0.00 4.42
5423 5733 2.480419 GCTCAACTTAGTTCATGTGCGT 59.520 45.455 0.00 0.00 0.00 5.24
5424 5734 2.480037 TGCTCAACTTAGTTCATGTGCG 59.520 45.455 0.00 0.00 35.64 5.34
5425 5735 4.023707 ACTTGCTCAACTTAGTTCATGTGC 60.024 41.667 0.00 0.00 34.02 4.57
5426 5736 5.613360 CGACTTGCTCAACTTAGTTCATGTG 60.613 44.000 0.00 0.00 0.00 3.21
5427 5737 4.449068 CGACTTGCTCAACTTAGTTCATGT 59.551 41.667 0.00 0.00 0.00 3.21
5428 5738 4.449068 ACGACTTGCTCAACTTAGTTCATG 59.551 41.667 0.00 0.00 0.00 3.07
5429 5739 4.632153 ACGACTTGCTCAACTTAGTTCAT 58.368 39.130 0.00 0.00 0.00 2.57
5430 5740 4.049186 GACGACTTGCTCAACTTAGTTCA 58.951 43.478 0.00 0.00 0.00 3.18
5431 5741 4.049186 TGACGACTTGCTCAACTTAGTTC 58.951 43.478 0.00 0.00 0.00 3.01
5432 5742 4.054780 TGACGACTTGCTCAACTTAGTT 57.945 40.909 0.00 0.00 0.00 2.24
5433 5743 3.728076 TGACGACTTGCTCAACTTAGT 57.272 42.857 0.00 0.00 0.00 2.24
5434 5744 5.406780 AGAAATGACGACTTGCTCAACTTAG 59.593 40.000 0.00 0.00 0.00 2.18
5435 5745 5.177511 CAGAAATGACGACTTGCTCAACTTA 59.822 40.000 0.00 0.00 0.00 2.24
5436 5746 4.024556 CAGAAATGACGACTTGCTCAACTT 60.025 41.667 0.00 0.00 0.00 2.66
5437 5747 3.496130 CAGAAATGACGACTTGCTCAACT 59.504 43.478 0.00 0.00 0.00 3.16
5438 5748 3.248602 ACAGAAATGACGACTTGCTCAAC 59.751 43.478 0.00 0.00 0.00 3.18
5439 5749 3.466836 ACAGAAATGACGACTTGCTCAA 58.533 40.909 0.00 0.00 0.00 3.02
5515 5825 7.212976 CCAGAGTGTGCATTAGTATCTTGTAT 58.787 38.462 0.00 0.00 0.00 2.29
5568 5878 8.773404 ACGCTGAAACAGATAAAGTTATTACT 57.227 30.769 2.81 0.00 32.23 2.24
5582 5892 2.046313 GTGCAATGAACGCTGAAACAG 58.954 47.619 0.00 0.00 34.12 3.16
5589 5899 2.796031 CAAATGTTGTGCAATGAACGCT 59.204 40.909 0.00 0.00 0.00 5.07
5590 5900 2.539274 ACAAATGTTGTGCAATGAACGC 59.461 40.909 0.00 0.00 43.48 4.84
5591 5901 3.795639 TGACAAATGTTGTGCAATGAACG 59.204 39.130 0.00 0.00 45.52 3.95
5592 5902 5.910637 ATGACAAATGTTGTGCAATGAAC 57.089 34.783 0.00 0.00 45.52 3.18
5593 5903 6.922247 AAATGACAAATGTTGTGCAATGAA 57.078 29.167 0.00 0.00 45.52 2.57
5594 5904 8.429493 TTTAAATGACAAATGTTGTGCAATGA 57.571 26.923 0.00 0.00 45.52 2.57
5595 5905 9.666626 ATTTTAAATGACAAATGTTGTGCAATG 57.333 25.926 0.00 0.00 45.52 2.82
5599 5909 9.264782 GCATATTTTAAATGACAAATGTTGTGC 57.735 29.630 0.00 0.00 45.52 4.57
5600 5910 9.757859 GGCATATTTTAAATGACAAATGTTGTG 57.242 29.630 0.00 0.00 45.52 3.33
5604 5914 9.887629 TGATGGCATATTTTAAATGACAAATGT 57.112 25.926 0.00 0.00 45.23 2.71
5608 5918 9.979578 GGTATGATGGCATATTTTAAATGACAA 57.020 29.630 0.00 0.00 45.23 3.18
5609 5919 9.140874 TGGTATGATGGCATATTTTAAATGACA 57.859 29.630 0.00 0.00 46.11 3.58
5610 5920 9.979578 TTGGTATGATGGCATATTTTAAATGAC 57.020 29.630 0.00 0.00 39.09 3.06
5612 5922 9.985730 ACTTGGTATGATGGCATATTTTAAATG 57.014 29.630 0.00 0.00 39.09 2.32
5616 5926 9.634021 TGTTACTTGGTATGATGGCATATTTTA 57.366 29.630 0.00 0.00 39.09 1.52
5617 5927 8.532186 TGTTACTTGGTATGATGGCATATTTT 57.468 30.769 0.00 0.00 39.09 1.82
5618 5928 8.532186 TTGTTACTTGGTATGATGGCATATTT 57.468 30.769 0.00 0.00 39.09 1.40
5619 5929 8.710749 ATTGTTACTTGGTATGATGGCATATT 57.289 30.769 0.00 0.00 39.09 1.28
5620 5930 7.944000 TGATTGTTACTTGGTATGATGGCATAT 59.056 33.333 0.00 0.00 39.09 1.78
5621 5931 7.286313 TGATTGTTACTTGGTATGATGGCATA 58.714 34.615 0.00 0.00 35.94 3.14
5622 5932 6.128486 TGATTGTTACTTGGTATGATGGCAT 58.872 36.000 0.00 0.00 38.54 4.40
5623 5933 5.504853 TGATTGTTACTTGGTATGATGGCA 58.495 37.500 0.00 0.00 0.00 4.92
5624 5934 6.039717 ACATGATTGTTACTTGGTATGATGGC 59.960 38.462 0.00 0.00 29.55 4.40
5625 5935 7.572523 ACATGATTGTTACTTGGTATGATGG 57.427 36.000 0.00 0.00 29.55 3.51
5640 5950 6.432162 AGTCTCTGTTGCAATAACATGATTGT 59.568 34.615 0.59 0.00 38.77 2.71
5641 5951 6.849502 AGTCTCTGTTGCAATAACATGATTG 58.150 36.000 0.59 0.71 39.41 2.67
5642 5952 6.183360 CGAGTCTCTGTTGCAATAACATGATT 60.183 38.462 0.59 0.00 0.00 2.57
5643 5953 5.292834 CGAGTCTCTGTTGCAATAACATGAT 59.707 40.000 0.59 0.00 0.00 2.45
5644 5954 4.627035 CGAGTCTCTGTTGCAATAACATGA 59.373 41.667 0.59 0.00 0.00 3.07
5645 5955 4.726021 GCGAGTCTCTGTTGCAATAACATG 60.726 45.833 0.59 0.00 0.00 3.21
5646 5956 3.372206 GCGAGTCTCTGTTGCAATAACAT 59.628 43.478 0.59 0.00 0.00 2.71
5647 5957 2.736721 GCGAGTCTCTGTTGCAATAACA 59.263 45.455 0.59 0.00 0.00 2.41
5648 5958 2.996621 AGCGAGTCTCTGTTGCAATAAC 59.003 45.455 0.59 0.00 0.00 1.89
5696 6006 9.188588 GCACATAATAATTCTCATTTCACCATG 57.811 33.333 0.00 0.00 0.00 3.66
5721 6031 5.065218 ACGTCCATCTTTTTCATATGTGAGC 59.935 40.000 1.90 0.00 35.39 4.26
5722 6032 6.536582 AGACGTCCATCTTTTTCATATGTGAG 59.463 38.462 13.01 0.00 35.39 3.51
5723 6033 6.406370 AGACGTCCATCTTTTTCATATGTGA 58.594 36.000 13.01 0.00 0.00 3.58
5725 6035 6.406370 TGAGACGTCCATCTTTTTCATATGT 58.594 36.000 13.01 0.00 0.00 2.29
5726 6036 6.908870 TGAGACGTCCATCTTTTTCATATG 57.091 37.500 13.01 0.00 0.00 1.78
5729 6039 7.275183 TCATATGAGACGTCCATCTTTTTCAT 58.725 34.615 18.79 16.61 0.00 2.57
5730 6040 6.639563 TCATATGAGACGTCCATCTTTTTCA 58.360 36.000 18.79 11.44 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.