Multiple sequence alignment - TraesCS1A01G224000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G224000 chr1A 100.000 4058 0 0 814 4871 394328535 394324478 0.000000e+00 7494
1 TraesCS1A01G224000 chr1A 100.000 464 0 0 1 464 394329348 394328885 0.000000e+00 857
2 TraesCS1A01G224000 chr1A 92.014 288 22 1 4585 4871 564569185 564568898 2.110000e-108 403
3 TraesCS1A01G224000 chr1D 95.016 3451 122 23 814 4247 314125081 314121664 0.000000e+00 5374
4 TraesCS1A01G224000 chr1D 95.410 305 6 4 165 464 314125384 314125083 3.410000e-131 479
5 TraesCS1A01G224000 chr1D 89.806 206 16 4 4301 4506 314119230 314119030 4.840000e-65 259
6 TraesCS1A01G224000 chr1D 90.361 166 9 4 4 169 314125581 314125423 1.370000e-50 211
7 TraesCS1A01G224000 chr1B 93.333 2685 138 21 814 3481 424180181 424177521 0.000000e+00 3928
8 TraesCS1A01G224000 chr1B 88.621 870 63 11 3298 4160 424177525 424176685 0.000000e+00 1026
9 TraesCS1A01G224000 chr1B 92.667 300 10 5 175 464 424180480 424180183 5.830000e-114 422
10 TraesCS1A01G224000 chr1B 80.548 365 52 8 1346 1707 424179543 424179195 3.740000e-66 263
11 TraesCS1A01G224000 chr1B 79.292 367 54 14 1445 1794 424179641 424179280 2.270000e-58 237
12 TraesCS1A01G224000 chr6B 92.388 289 20 2 4585 4871 463557041 463556753 1.260000e-110 411
13 TraesCS1A01G224000 chr6B 91.126 293 24 2 4579 4871 161601845 161602135 3.530000e-106 396
14 TraesCS1A01G224000 chr5A 91.837 294 22 2 4579 4871 667034277 667034569 4.540000e-110 409
15 TraesCS1A01G224000 chr2A 92.334 287 20 2 4585 4871 12333308 12333024 1.630000e-109 407
16 TraesCS1A01G224000 chr2A 93.333 75 5 0 4508 4582 720228964 720228890 1.430000e-20 111
17 TraesCS1A01G224000 chr7A 91.468 293 24 1 4579 4871 269081472 269081763 7.590000e-108 401
18 TraesCS1A01G224000 chr7A 93.750 80 5 0 4503 4582 716713567 716713488 2.380000e-23 121
19 TraesCS1A01G224000 chr7A 93.590 78 5 0 4505 4582 27193611 27193688 3.080000e-22 117
20 TraesCS1A01G224000 chr5B 91.986 287 22 1 4585 4871 684004436 684004151 7.590000e-108 401
21 TraesCS1A01G224000 chr5B 85.294 238 31 3 1253 1490 217630673 217630906 4.870000e-60 243
22 TraesCS1A01G224000 chr5B 96.104 77 3 0 4506 4582 690372342 690372418 5.120000e-25 126
23 TraesCS1A01G224000 chr5B 96.000 75 3 0 4508 4582 319798921 319798847 6.620000e-24 122
24 TraesCS1A01G224000 chr6A 91.126 293 26 0 4579 4871 410889530 410889822 9.820000e-107 398
25 TraesCS1A01G224000 chr7B 91.409 291 22 3 4582 4871 21718069 21718357 3.530000e-106 396
26 TraesCS1A01G224000 chr2D 76.380 326 51 20 2352 2663 638786635 638786322 8.440000e-33 152
27 TraesCS1A01G224000 chr4D 94.872 78 3 1 4505 4582 145530449 145530373 2.380000e-23 121
28 TraesCS1A01G224000 chr4D 94.444 72 4 0 4511 4582 496376490 496376419 1.430000e-20 111
29 TraesCS1A01G224000 chr4B 93.333 75 5 0 4508 4582 655775976 655775902 1.430000e-20 111
30 TraesCS1A01G224000 chr3A 92.208 77 6 0 4506 4582 17689379 17689303 5.150000e-20 110
31 TraesCS1A01G224000 chr2B 76.818 220 29 14 2462 2668 784192836 784192626 2.400000e-18 104
32 TraesCS1A01G224000 chr5D 89.873 79 7 1 19 97 543492029 543492106 3.100000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G224000 chr1A 394324478 394329348 4870 True 4175.50 7494 100.00000 1 4871 2 chr1A.!!$R2 4870
1 TraesCS1A01G224000 chr1D 314119030 314125581 6551 True 1580.75 5374 92.64825 4 4506 4 chr1D.!!$R1 4502
2 TraesCS1A01G224000 chr1B 424176685 424180480 3795 True 1175.20 3928 86.89220 175 4160 5 chr1B.!!$R1 3985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 965 0.106967 GTGAGGAATTCCCAGGCTCC 60.107 60.0 21.22 3.34 37.41 4.70 F
1864 1932 0.321346 GGGCTGTTTTTGTGGGATGG 59.679 55.0 0.00 0.00 0.00 3.51 F
3485 3735 0.602562 TTGCTGGTGTTTATGCAGGC 59.397 50.0 0.00 0.00 36.75 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 2139 0.035881 TCCAGCAAGGAGACAGCAAG 59.964 55.0 0.0 0.0 43.07 4.01 R
3605 3855 0.968405 CCAAAGCAAGCCAAGCCTTA 59.032 50.0 0.0 0.0 0.00 2.69 R
4790 7430 0.107268 TCTGTGCAGCTCTCAGCAAA 59.893 50.0 0.0 0.0 45.56 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.116753 GCTATATGATTAAAATCGGATCCAACG 58.883 37.037 13.41 0.00 38.26 4.10
74 75 2.228241 CGCACGCATCGTTATCCGT 61.228 57.895 0.00 0.00 38.32 4.69
76 77 1.924335 CACGCATCGTTATCCGTGG 59.076 57.895 4.30 0.00 45.08 4.94
89 90 2.779429 TCCGTGGGGTGATCCTAATA 57.221 50.000 0.00 0.00 35.33 0.98
100 101 6.787458 GGGGTGATCCTAATAATTTCCCATTT 59.213 38.462 0.00 0.00 34.62 2.32
112 113 3.281727 TTCCCATTTGAGAATCCCTCG 57.718 47.619 0.00 0.00 44.92 4.63
113 114 2.196595 TCCCATTTGAGAATCCCTCGT 58.803 47.619 0.00 0.00 44.92 4.18
194 238 1.853319 CCACAACAACTCTCGCGTC 59.147 57.895 5.77 0.00 0.00 5.19
199 243 2.067091 AACAACTCTCGCGTCGTCCA 62.067 55.000 5.77 0.00 0.00 4.02
346 390 4.840005 GCACCGAGCCCTAGCCAC 62.840 72.222 0.00 0.00 41.25 5.01
347 391 3.077556 CACCGAGCCCTAGCCACT 61.078 66.667 0.00 0.00 41.25 4.00
443 500 1.461268 CCAAAGCCCCAAACCCCTT 60.461 57.895 0.00 0.00 0.00 3.95
908 965 0.106967 GTGAGGAATTCCCAGGCTCC 60.107 60.000 21.22 3.34 37.41 4.70
962 1019 2.203582 GCCTTCCCCGGGTGTTTT 60.204 61.111 21.85 0.00 0.00 2.43
965 1022 2.595172 TTCCCCGGGTGTTTTCGC 60.595 61.111 21.85 0.00 0.00 4.70
966 1023 4.992511 TCCCCGGGTGTTTTCGCG 62.993 66.667 21.85 0.00 42.02 5.87
974 1032 1.006825 GGTGTTTTCGCGGCCATTTC 61.007 55.000 6.13 0.00 0.00 2.17
1092 1150 3.792053 GACCGCCGCCGAGATCATT 62.792 63.158 0.00 0.00 36.29 2.57
1117 1175 2.175069 AGTAATCTCGCCTCCCTAGACA 59.825 50.000 0.00 0.00 0.00 3.41
1130 1190 2.548067 CCCTAGACACTCGTTTGCTGTT 60.548 50.000 0.00 0.00 0.00 3.16
1174 1239 3.303791 GCGATTTTTAGTTATCGGGGCAG 60.304 47.826 0.00 0.00 42.81 4.85
1206 1271 5.395990 CGGATTAGGGTGTGTATTGTTACCT 60.396 44.000 0.00 0.00 33.71 3.08
1207 1272 5.820947 GGATTAGGGTGTGTATTGTTACCTG 59.179 44.000 0.00 0.00 33.71 4.00
1231 1296 3.058293 TGCTGAATTTAGCTGTTTGGTCG 60.058 43.478 21.34 0.00 44.01 4.79
1284 1350 0.473326 GCTCCCTGCAGAGGAATGAT 59.527 55.000 17.39 0.00 42.93 2.45
1338 1404 5.686753 TGGTTGTAGTTTTATGACACTGGT 58.313 37.500 0.00 0.00 0.00 4.00
1440 1506 4.370364 AAATTCAGTGTGCACGTCTTTT 57.630 36.364 13.13 7.99 36.20 2.27
1493 1559 1.283029 ACCCTGCTCTGTTATGTGCAT 59.717 47.619 0.00 0.00 36.16 3.96
1498 1564 3.156293 TGCTCTGTTATGTGCATGGTTT 58.844 40.909 0.00 0.00 32.50 3.27
1571 1637 6.239120 GCTCCATTTTGCTGGTGATATTGTAT 60.239 38.462 0.00 0.00 37.57 2.29
1622 1690 1.081242 CAAAATTCAGCGCACGCCT 60.081 52.632 11.47 0.00 43.17 5.52
1732 1800 7.432350 TTCATTCTTTGTTTGCTTTTGTTGT 57.568 28.000 0.00 0.00 0.00 3.32
1758 1826 3.080319 GACTCACCCTACTCTGTTACGT 58.920 50.000 0.00 0.00 0.00 3.57
1759 1827 3.494332 ACTCACCCTACTCTGTTACGTT 58.506 45.455 0.00 0.00 0.00 3.99
1794 1862 6.713520 TGCAATTTTAAAATTCAGTGTGCAC 58.286 32.000 22.59 10.75 36.52 4.57
1814 1882 1.461127 CGTGCTGAGAAAGGCTGTAAC 59.539 52.381 0.00 0.00 0.00 2.50
1864 1932 0.321346 GGGCTGTTTTTGTGGGATGG 59.679 55.000 0.00 0.00 0.00 3.51
1882 1950 1.227438 GGCCATGGCATGTGAATGC 60.227 57.895 36.56 19.39 46.27 3.56
2046 2114 9.182214 ACAATTTCATAACAGAGTAATGCATCT 57.818 29.630 0.00 0.00 0.00 2.90
2079 2147 8.125448 GTCTTTCATAACATATTCCTTGCTGTC 58.875 37.037 0.00 0.00 0.00 3.51
2412 2480 2.569404 TGTGGTGGCTCATACACATGTA 59.431 45.455 0.00 0.00 38.76 2.29
2524 2592 6.126478 ACCTGGCAAGAAGGTACATTATGTAT 60.126 38.462 8.39 0.00 46.44 2.29
2600 2668 4.717877 TGGTTGCTGAAATTTCTCTCTGA 58.282 39.130 18.64 0.00 0.00 3.27
2603 2671 6.942005 TGGTTGCTGAAATTTCTCTCTGAATA 59.058 34.615 18.64 0.00 34.24 1.75
2605 2673 7.967303 GGTTGCTGAAATTTCTCTCTGAATAAG 59.033 37.037 18.64 5.31 34.24 1.73
2680 2748 9.924650 TTAGTAATCCGCTCCTTATATTTTCTC 57.075 33.333 0.00 0.00 0.00 2.87
2818 2886 3.245754 TGGTACTTAGTGTTTCAAACGCG 59.754 43.478 3.53 3.53 46.18 6.01
2821 2889 2.286025 ACTTAGTGTTTCAAACGCGGAC 59.714 45.455 12.47 0.00 46.18 4.79
2908 2976 3.042682 TGGCGAGGGAAAGGTGATAATA 58.957 45.455 0.00 0.00 0.00 0.98
2915 2983 6.647067 CGAGGGAAAGGTGATAATAGATGTTC 59.353 42.308 0.00 0.00 0.00 3.18
2948 3016 8.039538 TGATGATATTTTGGCTTGCATGTTTTA 58.960 29.630 1.14 0.00 0.00 1.52
2949 3017 8.967664 ATGATATTTTGGCTTGCATGTTTTAT 57.032 26.923 1.14 0.00 0.00 1.40
2951 3019 9.311916 TGATATTTTGGCTTGCATGTTTTATAC 57.688 29.630 1.14 0.00 0.00 1.47
2952 3020 9.533253 GATATTTTGGCTTGCATGTTTTATACT 57.467 29.630 1.14 0.00 0.00 2.12
2953 3021 7.599630 ATTTTGGCTTGCATGTTTTATACTG 57.400 32.000 1.14 0.00 0.00 2.74
2954 3022 5.720371 TTGGCTTGCATGTTTTATACTGT 57.280 34.783 1.14 0.00 0.00 3.55
2955 3023 5.309323 TGGCTTGCATGTTTTATACTGTC 57.691 39.130 1.14 0.00 0.00 3.51
2956 3024 4.157656 TGGCTTGCATGTTTTATACTGTCC 59.842 41.667 1.14 0.00 0.00 4.02
2957 3025 4.399303 GGCTTGCATGTTTTATACTGTCCT 59.601 41.667 1.14 0.00 0.00 3.85
2958 3026 5.105756 GGCTTGCATGTTTTATACTGTCCTT 60.106 40.000 1.14 0.00 0.00 3.36
2959 3027 6.094881 GGCTTGCATGTTTTATACTGTCCTTA 59.905 38.462 1.14 0.00 0.00 2.69
2960 3028 7.362574 GGCTTGCATGTTTTATACTGTCCTTAA 60.363 37.037 1.14 0.00 0.00 1.85
2999 3067 5.163754 AAATGTAATTCACAGCCGAAGCTAC 60.164 40.000 0.00 0.00 42.06 3.58
3312 3383 7.220030 AGCAAGGTAGTTATGATAATCCACTG 58.780 38.462 0.00 0.00 0.00 3.66
3458 3708 1.969923 TCCCTTCCATGCTTGTTTTGG 59.030 47.619 0.00 0.00 0.00 3.28
3485 3735 0.602562 TTGCTGGTGTTTATGCAGGC 59.397 50.000 0.00 0.00 36.75 4.85
3605 3855 1.068753 CGAGGGCGATGCTGAGATT 59.931 57.895 0.00 0.00 40.82 2.40
3685 3935 3.457610 AGGTTTGCTTGGTTGACATTG 57.542 42.857 0.00 0.00 0.00 2.82
3722 3975 6.000840 TGTTTGGTTGCTGATACATGAGTTA 58.999 36.000 0.00 0.00 0.00 2.24
3758 4011 5.105716 GCTAGACTGGTTTACATCTGTCTCA 60.106 44.000 5.09 0.00 40.75 3.27
3768 4021 2.304180 ACATCTGTCTCAAGTCCCTTGG 59.696 50.000 4.30 0.00 41.33 3.61
3778 4031 1.807814 AGTCCCTTGGAACTCACAGT 58.192 50.000 0.00 0.00 31.38 3.55
3783 4036 3.023832 CCCTTGGAACTCACAGTGTTTT 58.976 45.455 0.00 0.00 0.00 2.43
3816 4069 4.516652 AATAGGCAAGAAAGGAGATGCT 57.483 40.909 0.00 0.00 38.79 3.79
4005 4259 6.378280 GTCTAATGAAAATGGTTGATCCTGGT 59.622 38.462 0.00 0.00 37.07 4.00
4041 4295 7.930217 TCAAAGTACAAGCCTGATAATTATGC 58.070 34.615 1.78 0.31 0.00 3.14
4133 4388 4.555348 TTACCTGTGCTTTACCGTTTTG 57.445 40.909 0.00 0.00 0.00 2.44
4170 4425 5.236911 TGGTGTTCACCTACGTTATTTGTTC 59.763 40.000 20.48 0.00 0.00 3.18
4181 4436 3.367630 CGTTATTTGTTCTGGGCAATTGC 59.632 43.478 22.47 22.47 41.14 3.56
4182 4437 4.568956 GTTATTTGTTCTGGGCAATTGCT 58.431 39.130 28.42 8.43 41.70 3.91
4185 4440 0.961019 TGTTCTGGGCAATTGCTCAC 59.039 50.000 29.00 19.40 45.86 3.51
4196 4451 2.399396 ATTGCTCACGAACGTTTTGG 57.601 45.000 0.46 0.00 0.00 3.28
4200 4455 1.533129 GCTCACGAACGTTTTGGCTTT 60.533 47.619 0.46 0.00 0.00 3.51
4211 4466 5.278604 ACGTTTTGGCTTTTATGTCTGTTC 58.721 37.500 0.00 0.00 0.00 3.18
4244 4503 6.711277 TGGTGTTTCTCTATACAATCTTGCT 58.289 36.000 0.00 0.00 0.00 3.91
4247 4506 8.768955 GGTGTTTCTCTATACAATCTTGCTATG 58.231 37.037 0.00 0.00 0.00 2.23
4248 4507 8.768955 GTGTTTCTCTATACAATCTTGCTATGG 58.231 37.037 0.00 0.00 0.00 2.74
4254 5076 8.893219 TCTATACAATCTTGCTATGGTTGAAG 57.107 34.615 4.66 0.00 0.00 3.02
4262 5084 2.734606 TGCTATGGTTGAAGTTTCGTCG 59.265 45.455 0.00 0.00 0.00 5.12
4274 5096 5.735427 TGAAGTTTCGTCGTTTTGTTGAATC 59.265 36.000 0.00 0.00 0.00 2.52
4279 5101 2.656422 CGTCGTTTTGTTGAATCCATGC 59.344 45.455 0.00 0.00 0.00 4.06
4284 5106 5.461737 TCGTTTTGTTGAATCCATGCTTTTC 59.538 36.000 0.00 0.00 0.00 2.29
4330 6970 3.553096 CCATGAGGAGCACGGTATAAGAC 60.553 52.174 0.00 0.00 36.89 3.01
4354 6994 8.579850 ACTTGAGGATTCATGCAATAAGTAAA 57.420 30.769 0.00 0.00 33.08 2.01
4382 7022 7.584987 ACGAATTCATGTAAAAGGTGAGAAAG 58.415 34.615 6.22 0.00 0.00 2.62
4386 7026 9.753674 AATTCATGTAAAAGGTGAGAAAGGATA 57.246 29.630 0.00 0.00 0.00 2.59
4401 7041 1.827969 AGGATAGATGTGGCGGCTATC 59.172 52.381 11.43 13.98 39.66 2.08
4411 7051 4.203226 TGTGGCGGCTATCAATCAATTTA 58.797 39.130 11.43 0.00 0.00 1.40
4417 7057 6.426937 GGCGGCTATCAATCAATTTAGTCTTA 59.573 38.462 0.00 0.00 0.00 2.10
4418 7058 7.119846 GGCGGCTATCAATCAATTTAGTCTTAT 59.880 37.037 0.00 0.00 0.00 1.73
4419 7059 8.507249 GCGGCTATCAATCAATTTAGTCTTATT 58.493 33.333 0.00 0.00 0.00 1.40
4437 7077 2.649531 TTTGGTTGTCAGGGGTACAG 57.350 50.000 0.00 0.00 0.00 2.74
4443 7083 2.018355 TGTCAGGGGTACAGCACTTA 57.982 50.000 0.00 0.00 0.00 2.24
4462 7102 0.889186 AGGTAAACAAGCAGCGGGTG 60.889 55.000 2.14 2.14 0.00 4.61
4526 7166 6.902224 AAATCAATGTTTTAAATAGCGGGC 57.098 33.333 0.00 0.00 0.00 6.13
4527 7167 5.852282 ATCAATGTTTTAAATAGCGGGCT 57.148 34.783 0.00 0.00 0.00 5.19
4528 7168 6.952773 ATCAATGTTTTAAATAGCGGGCTA 57.047 33.333 2.42 2.42 0.00 3.93
4529 7169 6.952773 TCAATGTTTTAAATAGCGGGCTAT 57.047 33.333 7.36 7.36 40.63 2.97
4530 7170 6.734137 TCAATGTTTTAAATAGCGGGCTATG 58.266 36.000 13.53 0.00 39.03 2.23
4531 7171 5.705609 ATGTTTTAAATAGCGGGCTATGG 57.294 39.130 13.53 0.00 39.03 2.74
4532 7172 3.316868 TGTTTTAAATAGCGGGCTATGGC 59.683 43.478 13.53 0.00 39.03 4.40
4533 7173 2.940994 TTAAATAGCGGGCTATGGCA 57.059 45.000 13.53 0.00 39.03 4.92
4534 7174 3.433306 TTAAATAGCGGGCTATGGCAT 57.567 42.857 13.53 4.88 39.03 4.40
4535 7175 2.292828 AAATAGCGGGCTATGGCATT 57.707 45.000 13.53 2.26 39.03 3.56
4536 7176 2.292828 AATAGCGGGCTATGGCATTT 57.707 45.000 13.53 0.00 39.03 2.32
4537 7177 3.433306 AATAGCGGGCTATGGCATTTA 57.567 42.857 13.53 0.00 39.03 1.40
4538 7178 2.472695 TAGCGGGCTATGGCATTTAG 57.527 50.000 4.78 0.00 40.87 1.85
4539 7179 0.890996 AGCGGGCTATGGCATTTAGC 60.891 55.000 12.79 12.79 41.08 3.09
4548 7188 4.049393 GCATTTAGCGGCGATCCT 57.951 55.556 12.98 0.00 0.00 3.24
4549 7189 2.321213 GCATTTAGCGGCGATCCTT 58.679 52.632 12.98 0.00 0.00 3.36
4550 7190 1.508632 GCATTTAGCGGCGATCCTTA 58.491 50.000 12.98 0.00 0.00 2.69
4551 7191 1.871039 GCATTTAGCGGCGATCCTTAA 59.129 47.619 12.98 0.00 0.00 1.85
4552 7192 2.289547 GCATTTAGCGGCGATCCTTAAA 59.710 45.455 12.98 1.25 0.00 1.52
4553 7193 3.242936 GCATTTAGCGGCGATCCTTAAAA 60.243 43.478 12.98 0.79 0.00 1.52
4554 7194 4.732355 GCATTTAGCGGCGATCCTTAAAAA 60.732 41.667 12.98 0.00 0.00 1.94
4555 7195 4.345271 TTTAGCGGCGATCCTTAAAAAC 57.655 40.909 12.98 0.00 0.00 2.43
4556 7196 1.816074 AGCGGCGATCCTTAAAAACA 58.184 45.000 12.98 0.00 0.00 2.83
4557 7197 1.737793 AGCGGCGATCCTTAAAAACAG 59.262 47.619 12.98 0.00 0.00 3.16
4558 7198 1.794076 GCGGCGATCCTTAAAAACAGC 60.794 52.381 12.98 0.00 0.00 4.40
4559 7199 1.737793 CGGCGATCCTTAAAAACAGCT 59.262 47.619 0.00 0.00 0.00 4.24
4560 7200 2.933906 CGGCGATCCTTAAAAACAGCTA 59.066 45.455 0.00 0.00 0.00 3.32
4561 7201 3.560068 CGGCGATCCTTAAAAACAGCTAT 59.440 43.478 0.00 0.00 0.00 2.97
4562 7202 4.748102 CGGCGATCCTTAAAAACAGCTATA 59.252 41.667 0.00 0.00 0.00 1.31
4563 7203 5.107453 CGGCGATCCTTAAAAACAGCTATAG 60.107 44.000 0.00 0.00 0.00 1.31
4564 7204 5.334182 GGCGATCCTTAAAAACAGCTATAGC 60.334 44.000 17.33 17.33 42.49 2.97
4580 7220 6.662414 GCTATAGCGGCAAATTGTATATGA 57.338 37.500 9.40 0.00 0.00 2.15
4581 7221 7.072177 GCTATAGCGGCAAATTGTATATGAA 57.928 36.000 9.40 0.00 0.00 2.57
4582 7222 7.697691 GCTATAGCGGCAAATTGTATATGAAT 58.302 34.615 9.40 0.00 0.00 2.57
4583 7223 8.184192 GCTATAGCGGCAAATTGTATATGAATT 58.816 33.333 9.40 0.00 0.00 2.17
4585 7225 8.746922 ATAGCGGCAAATTGTATATGAATTTG 57.253 30.769 20.29 20.29 46.62 2.32
4591 7231 7.164226 CAAATTGTATATGAATTTGCACCCG 57.836 36.000 16.00 0.00 41.46 5.28
4592 7232 4.909696 TTGTATATGAATTTGCACCCGG 57.090 40.909 0.00 0.00 0.00 5.73
4593 7233 3.892284 TGTATATGAATTTGCACCCGGT 58.108 40.909 0.00 0.00 0.00 5.28
4594 7234 3.880490 TGTATATGAATTTGCACCCGGTC 59.120 43.478 0.00 0.00 0.00 4.79
4595 7235 2.498644 TATGAATTTGCACCCGGTCA 57.501 45.000 0.00 0.00 0.00 4.02
4596 7236 1.626686 ATGAATTTGCACCCGGTCAA 58.373 45.000 0.00 0.00 0.00 3.18
4597 7237 1.403814 TGAATTTGCACCCGGTCAAA 58.596 45.000 13.67 13.67 36.72 2.69
4598 7238 1.067821 TGAATTTGCACCCGGTCAAAC 59.932 47.619 13.61 5.70 35.34 2.93
4599 7239 1.067821 GAATTTGCACCCGGTCAAACA 59.932 47.619 13.61 0.00 35.34 2.83
4600 7240 1.115467 ATTTGCACCCGGTCAAACAA 58.885 45.000 13.61 2.97 35.34 2.83
4601 7241 0.895530 TTTGCACCCGGTCAAACAAA 59.104 45.000 0.00 0.88 0.00 2.83
4602 7242 0.895530 TTGCACCCGGTCAAACAAAA 59.104 45.000 0.00 0.00 0.00 2.44
4603 7243 1.115467 TGCACCCGGTCAAACAAAAT 58.885 45.000 0.00 0.00 0.00 1.82
4604 7244 1.482593 TGCACCCGGTCAAACAAAATT 59.517 42.857 0.00 0.00 0.00 1.82
4605 7245 2.131972 GCACCCGGTCAAACAAAATTC 58.868 47.619 0.00 0.00 0.00 2.17
4606 7246 2.482142 GCACCCGGTCAAACAAAATTCA 60.482 45.455 0.00 0.00 0.00 2.57
4607 7247 3.801983 GCACCCGGTCAAACAAAATTCAT 60.802 43.478 0.00 0.00 0.00 2.57
4608 7248 4.559704 GCACCCGGTCAAACAAAATTCATA 60.560 41.667 0.00 0.00 0.00 2.15
4609 7249 5.533482 CACCCGGTCAAACAAAATTCATAA 58.467 37.500 0.00 0.00 0.00 1.90
4610 7250 5.986135 CACCCGGTCAAACAAAATTCATAAA 59.014 36.000 0.00 0.00 0.00 1.40
4611 7251 6.480320 CACCCGGTCAAACAAAATTCATAAAA 59.520 34.615 0.00 0.00 0.00 1.52
4612 7252 7.011482 CACCCGGTCAAACAAAATTCATAAAAA 59.989 33.333 0.00 0.00 0.00 1.94
4650 7290 9.777297 TTCAGAAAATTCCAAAAGAAATTAGGG 57.223 29.630 0.00 0.00 38.21 3.53
4651 7291 8.933653 TCAGAAAATTCCAAAAGAAATTAGGGT 58.066 29.630 0.00 0.00 38.21 4.34
4652 7292 8.992073 CAGAAAATTCCAAAAGAAATTAGGGTG 58.008 33.333 0.00 0.00 38.21 4.61
4653 7293 8.156820 AGAAAATTCCAAAAGAAATTAGGGTGG 58.843 33.333 0.00 0.00 38.21 4.61
4654 7294 7.387265 AAATTCCAAAAGAAATTAGGGTGGT 57.613 32.000 0.00 0.00 38.21 4.16
4655 7295 8.499288 AAATTCCAAAAGAAATTAGGGTGGTA 57.501 30.769 0.00 0.00 38.21 3.25
4656 7296 7.718334 ATTCCAAAAGAAATTAGGGTGGTAG 57.282 36.000 0.00 0.00 38.21 3.18
4657 7297 6.457159 TCCAAAAGAAATTAGGGTGGTAGA 57.543 37.500 0.00 0.00 0.00 2.59
4658 7298 6.243148 TCCAAAAGAAATTAGGGTGGTAGAC 58.757 40.000 0.00 0.00 0.00 2.59
4659 7299 6.007703 CCAAAAGAAATTAGGGTGGTAGACA 58.992 40.000 0.00 0.00 0.00 3.41
4660 7300 6.492087 CCAAAAGAAATTAGGGTGGTAGACAA 59.508 38.462 0.00 0.00 0.00 3.18
4661 7301 7.178451 CCAAAAGAAATTAGGGTGGTAGACAAT 59.822 37.037 0.00 0.00 0.00 2.71
4662 7302 8.585018 CAAAAGAAATTAGGGTGGTAGACAATT 58.415 33.333 0.00 0.00 0.00 2.32
4663 7303 8.721133 AAAGAAATTAGGGTGGTAGACAATTT 57.279 30.769 0.00 0.00 0.00 1.82
4664 7304 7.703058 AGAAATTAGGGTGGTAGACAATTTG 57.297 36.000 0.00 0.00 0.00 2.32
4665 7305 7.466804 AGAAATTAGGGTGGTAGACAATTTGA 58.533 34.615 2.79 0.00 0.00 2.69
4666 7306 8.116026 AGAAATTAGGGTGGTAGACAATTTGAT 58.884 33.333 2.79 0.00 0.00 2.57
4667 7307 7.645058 AATTAGGGTGGTAGACAATTTGATG 57.355 36.000 2.79 0.00 0.00 3.07
4668 7308 3.356290 AGGGTGGTAGACAATTTGATGC 58.644 45.455 2.79 0.00 0.00 3.91
4669 7309 2.097466 GGGTGGTAGACAATTTGATGCG 59.903 50.000 2.79 0.00 0.00 4.73
4670 7310 2.747446 GGTGGTAGACAATTTGATGCGT 59.253 45.455 2.79 0.00 0.00 5.24
4671 7311 3.426159 GGTGGTAGACAATTTGATGCGTG 60.426 47.826 2.79 0.00 0.00 5.34
4672 7312 3.435327 GTGGTAGACAATTTGATGCGTGA 59.565 43.478 2.79 0.00 0.00 4.35
4673 7313 3.684305 TGGTAGACAATTTGATGCGTGAG 59.316 43.478 2.79 0.00 0.00 3.51
4674 7314 3.063997 GGTAGACAATTTGATGCGTGAGG 59.936 47.826 2.79 0.00 0.00 3.86
4675 7315 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
4676 7316 3.937814 AGACAATTTGATGCGTGAGGTA 58.062 40.909 2.79 0.00 0.00 3.08
4677 7317 3.684788 AGACAATTTGATGCGTGAGGTAC 59.315 43.478 2.79 0.00 0.00 3.34
4678 7318 3.407698 ACAATTTGATGCGTGAGGTACA 58.592 40.909 2.79 0.00 0.00 2.90
4679 7319 3.188460 ACAATTTGATGCGTGAGGTACAC 59.812 43.478 2.79 0.00 45.11 2.90
4680 7320 2.831685 TTTGATGCGTGAGGTACACT 57.168 45.000 0.00 0.00 46.24 3.55
4681 7321 2.831685 TTGATGCGTGAGGTACACTT 57.168 45.000 0.00 0.00 46.24 3.16
4682 7322 2.363788 TGATGCGTGAGGTACACTTC 57.636 50.000 0.00 0.00 46.24 3.01
4683 7323 1.616374 TGATGCGTGAGGTACACTTCA 59.384 47.619 0.00 0.00 46.24 3.02
4684 7324 2.036604 TGATGCGTGAGGTACACTTCAA 59.963 45.455 0.00 0.00 46.24 2.69
4685 7325 2.831685 TGCGTGAGGTACACTTCAAT 57.168 45.000 0.00 0.00 46.24 2.57
4686 7326 3.120321 TGCGTGAGGTACACTTCAATT 57.880 42.857 0.00 0.00 46.24 2.32
4687 7327 3.472652 TGCGTGAGGTACACTTCAATTT 58.527 40.909 0.00 0.00 46.24 1.82
4688 7328 3.880490 TGCGTGAGGTACACTTCAATTTT 59.120 39.130 0.00 0.00 46.24 1.82
4689 7329 4.024387 TGCGTGAGGTACACTTCAATTTTC 60.024 41.667 0.00 0.00 46.24 2.29
4690 7330 4.024387 GCGTGAGGTACACTTCAATTTTCA 60.024 41.667 0.00 0.00 46.24 2.69
4691 7331 5.504994 GCGTGAGGTACACTTCAATTTTCAA 60.505 40.000 0.00 0.00 46.24 2.69
4692 7332 6.491394 CGTGAGGTACACTTCAATTTTCAAA 58.509 36.000 0.00 0.00 46.24 2.69
4693 7333 6.970043 CGTGAGGTACACTTCAATTTTCAAAA 59.030 34.615 0.00 0.00 46.24 2.44
4694 7334 7.044314 CGTGAGGTACACTTCAATTTTCAAAAC 60.044 37.037 0.00 0.00 46.24 2.43
4695 7335 7.757624 GTGAGGTACACTTCAATTTTCAAAACA 59.242 33.333 0.00 0.00 45.13 2.83
4696 7336 8.474025 TGAGGTACACTTCAATTTTCAAAACAT 58.526 29.630 0.00 0.00 0.00 2.71
4697 7337 9.313118 GAGGTACACTTCAATTTTCAAAACATT 57.687 29.630 0.00 0.00 0.00 2.71
4698 7338 9.665719 AGGTACACTTCAATTTTCAAAACATTT 57.334 25.926 0.00 0.00 0.00 2.32
4699 7339 9.701355 GGTACACTTCAATTTTCAAAACATTTG 57.299 29.630 0.00 0.00 0.00 2.32
4700 7340 9.701355 GTACACTTCAATTTTCAAAACATTTGG 57.299 29.630 3.25 0.00 0.00 3.28
4701 7341 8.558973 ACACTTCAATTTTCAAAACATTTGGA 57.441 26.923 3.25 0.00 0.00 3.53
4702 7342 8.450180 ACACTTCAATTTTCAAAACATTTGGAC 58.550 29.630 3.25 0.00 0.00 4.02
4703 7343 8.667463 CACTTCAATTTTCAAAACATTTGGACT 58.333 29.630 3.25 0.00 0.00 3.85
4704 7344 9.230122 ACTTCAATTTTCAAAACATTTGGACTT 57.770 25.926 3.25 0.00 0.00 3.01
4705 7345 9.706846 CTTCAATTTTCAAAACATTTGGACTTC 57.293 29.630 3.25 0.00 0.00 3.01
4706 7346 9.447157 TTCAATTTTCAAAACATTTGGACTTCT 57.553 25.926 3.25 0.00 0.00 2.85
4707 7347 8.881743 TCAATTTTCAAAACATTTGGACTTCTG 58.118 29.630 3.25 0.00 0.00 3.02
4708 7348 8.667463 CAATTTTCAAAACATTTGGACTTCTGT 58.333 29.630 3.25 0.00 0.00 3.41
4709 7349 7.593875 TTTTCAAAACATTTGGACTTCTGTG 57.406 32.000 3.25 0.00 0.00 3.66
4710 7350 4.681744 TCAAAACATTTGGACTTCTGTGC 58.318 39.130 3.25 0.00 34.96 4.57
4711 7351 4.159321 TCAAAACATTTGGACTTCTGTGCA 59.841 37.500 3.25 0.00 42.73 4.57
4712 7352 3.996150 AACATTTGGACTTCTGTGCAG 57.004 42.857 0.00 0.00 44.96 4.41
4713 7353 2.936202 ACATTTGGACTTCTGTGCAGT 58.064 42.857 0.00 0.00 44.96 4.40
4714 7354 3.290710 ACATTTGGACTTCTGTGCAGTT 58.709 40.909 0.00 0.00 44.96 3.16
4715 7355 3.701040 ACATTTGGACTTCTGTGCAGTTT 59.299 39.130 0.00 0.00 44.96 2.66
4716 7356 4.160252 ACATTTGGACTTCTGTGCAGTTTT 59.840 37.500 0.00 0.00 44.96 2.43
4717 7357 4.370364 TTTGGACTTCTGTGCAGTTTTC 57.630 40.909 0.00 0.00 44.96 2.29
4718 7358 2.997980 TGGACTTCTGTGCAGTTTTCA 58.002 42.857 0.00 0.00 39.59 2.69
4719 7359 2.945008 TGGACTTCTGTGCAGTTTTCAG 59.055 45.455 0.00 0.00 39.59 3.02
4720 7360 2.287248 GGACTTCTGTGCAGTTTTCAGC 60.287 50.000 0.00 0.00 34.50 4.26
4721 7361 2.355756 GACTTCTGTGCAGTTTTCAGCA 59.644 45.455 0.00 0.00 39.91 4.41
4722 7362 2.754552 ACTTCTGTGCAGTTTTCAGCAA 59.245 40.909 0.00 0.00 43.50 3.91
4723 7363 3.193267 ACTTCTGTGCAGTTTTCAGCAAA 59.807 39.130 0.00 0.00 43.50 3.68
4724 7364 3.865011 TCTGTGCAGTTTTCAGCAAAA 57.135 38.095 0.00 0.00 43.50 2.44
4725 7365 4.185467 TCTGTGCAGTTTTCAGCAAAAA 57.815 36.364 0.00 0.00 43.50 1.94
4766 7406 9.944376 AGAACAGTATATGAACAGTACACATTT 57.056 29.630 0.00 0.00 0.00 2.32
4775 7415 7.254227 TGAACAGTACACATTTTTACAGACC 57.746 36.000 0.00 0.00 0.00 3.85
4776 7416 7.051623 TGAACAGTACACATTTTTACAGACCT 58.948 34.615 0.00 0.00 0.00 3.85
4777 7417 7.225931 TGAACAGTACACATTTTTACAGACCTC 59.774 37.037 0.00 0.00 0.00 3.85
4778 7418 6.827727 ACAGTACACATTTTTACAGACCTCT 58.172 36.000 0.00 0.00 0.00 3.69
4780 7420 6.929049 CAGTACACATTTTTACAGACCTCTGA 59.071 38.462 9.35 0.00 46.59 3.27
4781 7421 7.604164 CAGTACACATTTTTACAGACCTCTGAT 59.396 37.037 9.35 0.00 46.59 2.90
4782 7422 8.157476 AGTACACATTTTTACAGACCTCTGATT 58.843 33.333 9.35 0.00 46.59 2.57
4783 7423 7.823745 ACACATTTTTACAGACCTCTGATTT 57.176 32.000 9.35 0.00 46.59 2.17
4784 7424 7.651808 ACACATTTTTACAGACCTCTGATTTG 58.348 34.615 9.35 0.00 46.59 2.32
4785 7425 7.285401 ACACATTTTTACAGACCTCTGATTTGT 59.715 33.333 9.35 0.00 46.59 2.83
4786 7426 7.805071 CACATTTTTACAGACCTCTGATTTGTC 59.195 37.037 9.35 0.00 46.59 3.18
4787 7427 6.877611 TTTTTACAGACCTCTGATTTGTCC 57.122 37.500 9.35 0.00 46.59 4.02
4788 7428 5.825593 TTTACAGACCTCTGATTTGTCCT 57.174 39.130 9.35 0.00 46.59 3.85
4789 7429 5.825593 TTACAGACCTCTGATTTGTCCTT 57.174 39.130 9.35 0.00 46.59 3.36
4790 7430 4.713792 ACAGACCTCTGATTTGTCCTTT 57.286 40.909 9.35 0.00 46.59 3.11
4791 7431 5.053978 ACAGACCTCTGATTTGTCCTTTT 57.946 39.130 9.35 0.00 46.59 2.27
4792 7432 5.449553 ACAGACCTCTGATTTGTCCTTTTT 58.550 37.500 9.35 0.00 46.59 1.94
4793 7433 5.300286 ACAGACCTCTGATTTGTCCTTTTTG 59.700 40.000 9.35 0.00 46.59 2.44
4794 7434 4.279420 AGACCTCTGATTTGTCCTTTTTGC 59.721 41.667 0.00 0.00 0.00 3.68
4795 7435 4.218312 ACCTCTGATTTGTCCTTTTTGCT 58.782 39.130 0.00 0.00 0.00 3.91
4796 7436 4.038402 ACCTCTGATTTGTCCTTTTTGCTG 59.962 41.667 0.00 0.00 0.00 4.41
4797 7437 4.279169 CCTCTGATTTGTCCTTTTTGCTGA 59.721 41.667 0.00 0.00 0.00 4.26
4798 7438 5.443185 TCTGATTTGTCCTTTTTGCTGAG 57.557 39.130 0.00 0.00 0.00 3.35
4799 7439 5.132502 TCTGATTTGTCCTTTTTGCTGAGA 58.867 37.500 0.00 0.00 0.00 3.27
4800 7440 5.240183 TCTGATTTGTCCTTTTTGCTGAGAG 59.760 40.000 0.00 0.00 0.00 3.20
4801 7441 3.715628 TTTGTCCTTTTTGCTGAGAGC 57.284 42.857 0.00 0.00 42.82 4.09
4802 7442 2.645838 TGTCCTTTTTGCTGAGAGCT 57.354 45.000 0.00 0.00 42.97 4.09
4803 7443 2.224606 TGTCCTTTTTGCTGAGAGCTG 58.775 47.619 0.00 0.00 42.97 4.24
4804 7444 1.068679 GTCCTTTTTGCTGAGAGCTGC 60.069 52.381 0.00 0.00 42.97 5.25
4805 7445 0.956633 CCTTTTTGCTGAGAGCTGCA 59.043 50.000 1.02 0.00 45.56 4.41
4806 7446 1.335689 CCTTTTTGCTGAGAGCTGCAC 60.336 52.381 1.02 0.00 46.64 4.57
4807 7447 1.335810 CTTTTTGCTGAGAGCTGCACA 59.664 47.619 1.02 0.00 46.64 4.57
4808 7448 0.949397 TTTTGCTGAGAGCTGCACAG 59.051 50.000 1.02 9.52 46.64 3.66
4809 7449 0.107268 TTTGCTGAGAGCTGCACAGA 59.893 50.000 19.67 7.28 46.64 3.41
4810 7450 0.107268 TTGCTGAGAGCTGCACAGAA 59.893 50.000 19.67 10.58 46.64 3.02
4811 7451 0.320508 TGCTGAGAGCTGCACAGAAG 60.321 55.000 19.67 7.28 42.93 2.85
4812 7452 0.320596 GCTGAGAGCTGCACAGAAGT 60.321 55.000 19.67 0.00 38.45 3.01
4813 7453 1.712401 CTGAGAGCTGCACAGAAGTC 58.288 55.000 13.36 0.00 37.38 3.01
4814 7454 0.319728 TGAGAGCTGCACAGAAGTCC 59.680 55.000 1.02 0.00 0.00 3.85
4815 7455 0.319728 GAGAGCTGCACAGAAGTCCA 59.680 55.000 1.02 0.00 0.00 4.02
4816 7456 0.761187 AGAGCTGCACAGAAGTCCAA 59.239 50.000 1.02 0.00 0.00 3.53
4817 7457 1.141657 AGAGCTGCACAGAAGTCCAAA 59.858 47.619 1.02 0.00 0.00 3.28
4818 7458 2.157738 GAGCTGCACAGAAGTCCAAAT 58.842 47.619 1.02 0.00 0.00 2.32
4819 7459 3.008375 AGAGCTGCACAGAAGTCCAAATA 59.992 43.478 1.02 0.00 0.00 1.40
4820 7460 3.944015 GAGCTGCACAGAAGTCCAAATAT 59.056 43.478 1.02 0.00 0.00 1.28
4821 7461 4.338879 AGCTGCACAGAAGTCCAAATATT 58.661 39.130 1.02 0.00 0.00 1.28
4822 7462 4.768968 AGCTGCACAGAAGTCCAAATATTT 59.231 37.500 1.02 0.00 0.00 1.40
4823 7463 5.244626 AGCTGCACAGAAGTCCAAATATTTT 59.755 36.000 1.02 0.00 0.00 1.82
4824 7464 6.434028 AGCTGCACAGAAGTCCAAATATTTTA 59.566 34.615 1.02 0.00 0.00 1.52
4825 7465 7.039784 AGCTGCACAGAAGTCCAAATATTTTAA 60.040 33.333 1.02 0.00 0.00 1.52
4826 7466 7.598493 GCTGCACAGAAGTCCAAATATTTTAAA 59.402 33.333 0.81 0.00 0.00 1.52
4827 7467 9.474920 CTGCACAGAAGTCCAAATATTTTAAAA 57.525 29.630 2.51 2.51 0.00 1.52
4828 7468 9.823647 TGCACAGAAGTCCAAATATTTTAAAAA 57.176 25.926 4.44 0.00 0.00 1.94
4855 7495 3.038352 CGTACCTCACGCATCAAATTG 57.962 47.619 0.00 0.00 45.03 2.32
4856 7496 2.415168 CGTACCTCACGCATCAAATTGT 59.585 45.455 0.00 0.00 45.03 2.71
4857 7497 3.483574 CGTACCTCACGCATCAAATTGTC 60.484 47.826 0.00 0.00 45.03 3.18
4858 7498 2.783135 ACCTCACGCATCAAATTGTCT 58.217 42.857 0.00 0.00 0.00 3.41
4859 7499 3.937814 ACCTCACGCATCAAATTGTCTA 58.062 40.909 0.00 0.00 0.00 2.59
4860 7500 3.684788 ACCTCACGCATCAAATTGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
4861 7501 3.063997 CCTCACGCATCAAATTGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
4862 7502 3.669536 TCACGCATCAAATTGTCTACCA 58.330 40.909 0.00 0.00 0.00 3.25
4863 7503 4.260985 TCACGCATCAAATTGTCTACCAT 58.739 39.130 0.00 0.00 0.00 3.55
4864 7504 4.332543 TCACGCATCAAATTGTCTACCATC 59.667 41.667 0.00 0.00 0.00 3.51
4865 7505 3.627577 ACGCATCAAATTGTCTACCATCC 59.372 43.478 0.00 0.00 0.00 3.51
4866 7506 3.879295 CGCATCAAATTGTCTACCATCCT 59.121 43.478 0.00 0.00 0.00 3.24
4867 7507 5.056480 CGCATCAAATTGTCTACCATCCTA 58.944 41.667 0.00 0.00 0.00 2.94
4868 7508 5.527214 CGCATCAAATTGTCTACCATCCTAA 59.473 40.000 0.00 0.00 0.00 2.69
4869 7509 6.205464 CGCATCAAATTGTCTACCATCCTAAT 59.795 38.462 0.00 0.00 0.00 1.73
4870 7510 7.255242 CGCATCAAATTGTCTACCATCCTAATT 60.255 37.037 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 4.734503 TGGGAAATTATTAGGATCACCCCA 59.265 41.667 0.00 0.00 37.74 4.96
75 76 5.333566 TGGGAAATTATTAGGATCACCCC 57.666 43.478 0.00 0.00 36.73 4.95
76 77 7.508977 TCAAATGGGAAATTATTAGGATCACCC 59.491 37.037 0.00 0.00 36.73 4.61
89 90 4.646492 CGAGGGATTCTCAAATGGGAAATT 59.354 41.667 0.00 0.00 42.55 1.82
145 146 6.041979 CCAGGGATTCTTTTTCTCAAAGGAAA 59.958 38.462 0.00 0.00 40.33 3.13
148 149 4.221482 CCCAGGGATTCTTTTTCTCAAAGG 59.779 45.833 0.00 0.00 0.00 3.11
149 150 4.322273 GCCCAGGGATTCTTTTTCTCAAAG 60.322 45.833 10.89 0.00 0.00 2.77
150 151 3.578282 GCCCAGGGATTCTTTTTCTCAAA 59.422 43.478 10.89 0.00 0.00 2.69
157 158 1.000359 CCGGCCCAGGGATTCTTTT 60.000 57.895 10.89 0.00 0.00 2.27
194 238 1.472728 GCCCATACTTACAGGTGGACG 60.473 57.143 0.00 0.00 33.53 4.79
199 243 3.710165 GGTTCTAGCCCATACTTACAGGT 59.290 47.826 0.00 0.00 0.00 4.00
345 389 1.218316 GGCGGCTGCTTGTAGTAGT 59.782 57.895 18.85 0.00 42.25 2.73
346 390 1.084370 GTGGCGGCTGCTTGTAGTAG 61.084 60.000 18.85 0.00 42.25 2.57
347 391 1.079405 GTGGCGGCTGCTTGTAGTA 60.079 57.895 18.85 0.00 42.25 1.82
385 436 1.983119 TAGAATGGAAGCGGGGGCTG 61.983 60.000 0.00 0.00 0.00 4.85
443 500 1.771646 GTTAGGGTTTGGGAGGGCA 59.228 57.895 0.00 0.00 0.00 5.36
875 932 0.736325 CCTCACCGTTCAAGCCGTAG 60.736 60.000 0.00 0.00 0.00 3.51
877 934 2.030562 CCTCACCGTTCAAGCCGT 59.969 61.111 0.00 0.00 0.00 5.68
962 1019 1.450669 GGTTAGGAAATGGCCGCGA 60.451 57.895 8.23 0.00 0.00 5.87
965 1022 2.289565 GAGAAGGTTAGGAAATGGCCG 58.710 52.381 0.00 0.00 0.00 6.13
966 1023 2.289565 CGAGAAGGTTAGGAAATGGCC 58.710 52.381 0.00 0.00 0.00 5.36
974 1032 1.207329 CAAGGACCCGAGAAGGTTAGG 59.793 57.143 0.00 0.00 41.42 2.69
1092 1150 3.028094 AGGGAGGCGAGATTACTGTTA 57.972 47.619 0.00 0.00 0.00 2.41
1117 1175 1.094785 AGCACAAACAGCAAACGAGT 58.905 45.000 0.00 0.00 0.00 4.18
1183 1248 5.820947 CAGGTAACAATACACACCCTAATCC 59.179 44.000 0.00 0.00 41.41 3.01
1185 1250 6.382919 ACAGGTAACAATACACACCCTAAT 57.617 37.500 0.00 0.00 41.41 1.73
1206 1271 4.099266 ACCAAACAGCTAAATTCAGCAACA 59.901 37.500 2.78 0.00 44.35 3.33
1207 1272 4.620982 ACCAAACAGCTAAATTCAGCAAC 58.379 39.130 2.78 0.00 44.35 4.17
1245 1310 5.091261 AGCTGTATGGACACTCCTTAAAG 57.909 43.478 0.00 0.00 37.46 1.85
1338 1404 7.148340 CCAACAAAATGGAGCAAACAAAAACTA 60.148 33.333 0.00 0.00 43.54 2.24
1440 1506 2.639065 ACAAAACGGAGCAAACAGAGA 58.361 42.857 0.00 0.00 0.00 3.10
1493 1559 3.006752 GGATGTTTCATGAAGGCAAACCA 59.993 43.478 21.46 10.19 39.06 3.67
1498 1564 3.765381 TCTTGGATGTTTCATGAAGGCA 58.235 40.909 8.41 12.00 0.00 4.75
1508 1574 3.890756 TGCACACAGAATCTTGGATGTTT 59.109 39.130 0.00 0.00 0.00 2.83
1571 1637 8.946085 CATAAAGGTGAACATAGCAAAGTAGAA 58.054 33.333 0.00 0.00 0.00 2.10
1622 1690 6.128063 CCAACAAAATGGAGCAAACAAAGAAA 60.128 34.615 0.00 0.00 43.54 2.52
1732 1800 3.779444 ACAGAGTAGGGTGAGTCATCAA 58.221 45.455 5.60 0.00 37.14 2.57
1794 1862 1.461127 GTTACAGCCTTTCTCAGCACG 59.539 52.381 0.00 0.00 0.00 5.34
1814 1882 3.319405 ACACTGAGAACCTCACACTACAG 59.681 47.826 0.00 0.00 35.39 2.74
2067 2135 1.353694 AGCAAGGAGACAGCAAGGAAT 59.646 47.619 0.00 0.00 36.26 3.01
2071 2139 0.035881 TCCAGCAAGGAGACAGCAAG 59.964 55.000 0.00 0.00 43.07 4.01
2209 2277 1.276421 AGTGGGGAGAAATGACAGACG 59.724 52.381 0.00 0.00 0.00 4.18
2412 2480 0.039035 TAACCGGCCCAGCTTTGATT 59.961 50.000 0.00 0.00 0.00 2.57
2524 2592 5.402054 AAGGCAACCAATGGGATAATCTA 57.598 39.130 3.55 0.00 38.05 1.98
2600 2668 9.936759 CAAAGAGAAAGGAGAAGACTACTTATT 57.063 33.333 0.00 0.00 45.55 1.40
2645 2713 6.289064 AGGAGCGGATTACTAATAAAACCAG 58.711 40.000 0.00 0.00 0.00 4.00
2680 2748 4.574013 GCTTCAGTGACATCCTTATTCTGG 59.426 45.833 0.00 0.00 0.00 3.86
2776 2844 4.000325 CCACTTTGTTACCATCGATGACA 59.000 43.478 26.86 19.15 0.00 3.58
2818 2886 1.474077 GCATCATCCACCTTTGTGTCC 59.526 52.381 0.00 0.00 41.09 4.02
2821 2889 2.439409 TCAGCATCATCCACCTTTGTG 58.561 47.619 0.00 0.00 42.39 3.33
2908 2976 7.834881 AAATATCATCATGCCAAGAACATCT 57.165 32.000 0.00 0.00 0.00 2.90
2915 2983 5.209818 AGCCAAAATATCATCATGCCAAG 57.790 39.130 0.00 0.00 0.00 3.61
2999 3067 1.554160 AGTGGTCTGCTTCTCATCCAG 59.446 52.381 0.00 0.00 32.21 3.86
3152 3220 9.880157 TTAGTAGACTAAAATAATGGGTGTCAC 57.120 33.333 0.00 0.00 35.67 3.67
3155 3223 9.054580 AGGTTAGTAGACTAAAATAATGGGTGT 57.945 33.333 3.72 0.00 39.84 4.16
3337 3584 2.614057 CCCAAGTGACTTGACACAAGTC 59.386 50.000 25.75 27.16 43.42 3.01
3427 3677 4.971924 AGCATGGAAGGGAGACTAATTACT 59.028 41.667 0.00 0.00 0.00 2.24
3428 3678 5.297569 AGCATGGAAGGGAGACTAATTAC 57.702 43.478 0.00 0.00 0.00 1.89
3444 3694 2.825861 AAGAGCCAAAACAAGCATGG 57.174 45.000 0.00 0.00 37.29 3.66
3458 3708 4.800471 GCATAAACACCAGCAATTAAGAGC 59.200 41.667 0.00 0.00 0.00 4.09
3605 3855 0.968405 CCAAAGCAAGCCAAGCCTTA 59.032 50.000 0.00 0.00 0.00 2.69
3685 3935 4.731773 GCAACCAAACAGAGCAGCATATAC 60.732 45.833 0.00 0.00 0.00 1.47
3722 3975 5.184892 ACCAGTCTAGCAATCAGGAAAAT 57.815 39.130 0.00 0.00 0.00 1.82
3787 4040 9.706529 ATCTCCTTTCTTGCCTATTAAAAGATT 57.293 29.630 0.00 0.00 30.41 2.40
3816 4069 1.194121 TGGGCTCTGCTACTTCTGCA 61.194 55.000 0.00 0.00 38.81 4.41
3896 4149 4.260866 GCAAAGAGCAGGTACAAACGTAAA 60.261 41.667 0.00 0.00 44.79 2.01
4005 4259 4.320421 GCTTGTACTTTGATGTGATGTGCA 60.320 41.667 0.00 0.00 0.00 4.57
4041 4295 2.415357 GGTAAACATTCGGCACACCATG 60.415 50.000 0.00 0.00 34.57 3.66
4133 4388 0.827507 AACACCAATCAGCCACACCC 60.828 55.000 0.00 0.00 0.00 4.61
4170 4425 0.109597 GTTCGTGAGCAATTGCCCAG 60.110 55.000 26.45 14.50 43.38 4.45
4181 4436 2.468532 AAAGCCAAAACGTTCGTGAG 57.531 45.000 0.00 0.00 0.00 3.51
4182 4437 2.923605 AAAAGCCAAAACGTTCGTGA 57.076 40.000 0.00 0.00 0.00 4.35
4185 4440 4.378616 CAGACATAAAAGCCAAAACGTTCG 59.621 41.667 0.00 0.00 0.00 3.95
4196 4451 5.582665 AGAATCCTCGAACAGACATAAAAGC 59.417 40.000 0.00 0.00 0.00 3.51
4200 4455 4.466370 ACCAGAATCCTCGAACAGACATAA 59.534 41.667 0.00 0.00 0.00 1.90
4211 4466 3.601443 AGAGAAACACCAGAATCCTCG 57.399 47.619 0.00 0.00 0.00 4.63
4244 4503 5.064962 ACAAAACGACGAAACTTCAACCATA 59.935 36.000 0.00 0.00 0.00 2.74
4247 4506 3.750512 ACAAAACGACGAAACTTCAACC 58.249 40.909 0.00 0.00 0.00 3.77
4248 4507 4.847217 TCAACAAAACGACGAAACTTCAAC 59.153 37.500 0.00 0.00 0.00 3.18
4254 5076 4.344448 TGGATTCAACAAAACGACGAAAC 58.656 39.130 0.00 0.00 0.00 2.78
4262 5084 5.049474 GGGAAAAGCATGGATTCAACAAAAC 60.049 40.000 0.00 0.00 0.00 2.43
4274 5096 4.280677 TCAAACTAAGTGGGAAAAGCATGG 59.719 41.667 0.00 0.00 0.00 3.66
4284 5106 7.502226 TGGCTGAATAATATCAAACTAAGTGGG 59.498 37.037 0.00 0.00 0.00 4.61
4330 6970 9.859427 TTTTTACTTATTGCATGAATCCTCAAG 57.141 29.630 0.00 0.00 34.49 3.02
4354 6994 7.936584 TCTCACCTTTTACATGAATTCGTTTT 58.063 30.769 0.00 0.00 0.00 2.43
4358 6998 7.023575 CCTTTCTCACCTTTTACATGAATTCG 58.976 38.462 0.00 0.00 0.00 3.34
4359 6999 8.110860 TCCTTTCTCACCTTTTACATGAATTC 57.889 34.615 0.00 0.00 0.00 2.17
4362 7002 8.602424 TCTATCCTTTCTCACCTTTTACATGAA 58.398 33.333 0.00 0.00 0.00 2.57
4363 7003 8.146053 TCTATCCTTTCTCACCTTTTACATGA 57.854 34.615 0.00 0.00 0.00 3.07
4364 7004 8.834465 CATCTATCCTTTCTCACCTTTTACATG 58.166 37.037 0.00 0.00 0.00 3.21
4365 7005 8.552296 ACATCTATCCTTTCTCACCTTTTACAT 58.448 33.333 0.00 0.00 0.00 2.29
4367 7007 7.281100 CCACATCTATCCTTTCTCACCTTTTAC 59.719 40.741 0.00 0.00 0.00 2.01
4368 7008 7.338710 CCACATCTATCCTTTCTCACCTTTTA 58.661 38.462 0.00 0.00 0.00 1.52
4369 7009 6.183347 CCACATCTATCCTTTCTCACCTTTT 58.817 40.000 0.00 0.00 0.00 2.27
4370 7010 5.749462 CCACATCTATCCTTTCTCACCTTT 58.251 41.667 0.00 0.00 0.00 3.11
4382 7022 1.550524 TGATAGCCGCCACATCTATCC 59.449 52.381 0.00 0.00 38.43 2.59
4386 7026 1.417517 TGATTGATAGCCGCCACATCT 59.582 47.619 0.00 0.00 0.00 2.90
4411 7051 3.397955 ACCCCTGACAACCAAATAAGACT 59.602 43.478 0.00 0.00 0.00 3.24
4417 7057 2.817839 GCTGTACCCCTGACAACCAAAT 60.818 50.000 0.00 0.00 0.00 2.32
4418 7058 1.477923 GCTGTACCCCTGACAACCAAA 60.478 52.381 0.00 0.00 0.00 3.28
4419 7059 0.109723 GCTGTACCCCTGACAACCAA 59.890 55.000 0.00 0.00 0.00 3.67
4420 7060 1.057275 TGCTGTACCCCTGACAACCA 61.057 55.000 0.00 0.00 0.00 3.67
4437 7077 2.412847 CGCTGCTTGTTTACCTAAGTGC 60.413 50.000 0.00 0.00 0.00 4.40
4443 7083 0.889186 CACCCGCTGCTTGTTTACCT 60.889 55.000 0.00 0.00 0.00 3.08
4462 7102 7.171508 GGTTTCCCAAATGACAGAAAAATTCTC 59.828 37.037 0.00 0.00 38.11 2.87
4506 7146 6.238897 CCATAGCCCGCTATTTAAAACATTGA 60.239 38.462 6.48 0.00 37.16 2.57
4507 7147 5.920273 CCATAGCCCGCTATTTAAAACATTG 59.080 40.000 6.48 0.00 37.16 2.82
4508 7148 5.508994 GCCATAGCCCGCTATTTAAAACATT 60.509 40.000 6.48 0.00 37.16 2.71
4509 7149 4.022329 GCCATAGCCCGCTATTTAAAACAT 60.022 41.667 6.48 0.00 37.16 2.71
4510 7150 3.316868 GCCATAGCCCGCTATTTAAAACA 59.683 43.478 6.48 0.00 37.16 2.83
4511 7151 3.316868 TGCCATAGCCCGCTATTTAAAAC 59.683 43.478 6.48 0.00 37.16 2.43
4512 7152 3.556999 TGCCATAGCCCGCTATTTAAAA 58.443 40.909 6.48 0.00 37.16 1.52
4513 7153 3.216187 TGCCATAGCCCGCTATTTAAA 57.784 42.857 6.48 0.00 37.16 1.52
4514 7154 2.940994 TGCCATAGCCCGCTATTTAA 57.059 45.000 6.48 0.00 37.16 1.52
4515 7155 3.433306 AATGCCATAGCCCGCTATTTA 57.567 42.857 6.48 0.00 37.16 1.40
4516 7156 2.292828 AATGCCATAGCCCGCTATTT 57.707 45.000 6.48 0.00 37.16 1.40
4517 7157 2.292828 AAATGCCATAGCCCGCTATT 57.707 45.000 6.48 0.00 37.16 1.73
4518 7158 2.941415 GCTAAATGCCATAGCCCGCTAT 60.941 50.000 3.31 3.31 39.87 2.97
4519 7159 1.610624 GCTAAATGCCATAGCCCGCTA 60.611 52.381 0.00 0.00 39.87 4.26
4520 7160 0.890996 GCTAAATGCCATAGCCCGCT 60.891 55.000 0.00 0.00 39.87 5.52
4521 7161 1.581447 GCTAAATGCCATAGCCCGC 59.419 57.895 2.08 0.00 39.87 6.13
4522 7162 1.577328 CCGCTAAATGCCATAGCCCG 61.577 60.000 6.85 0.00 42.18 6.13
4523 7163 1.866853 GCCGCTAAATGCCATAGCCC 61.867 60.000 6.85 0.00 42.18 5.19
4524 7164 1.581447 GCCGCTAAATGCCATAGCC 59.419 57.895 6.85 0.00 42.18 3.93
4525 7165 1.207593 CGCCGCTAAATGCCATAGC 59.792 57.895 3.20 3.20 41.85 2.97
4526 7166 1.394917 GATCGCCGCTAAATGCCATAG 59.605 52.381 0.00 0.00 38.78 2.23
4527 7167 1.438651 GATCGCCGCTAAATGCCATA 58.561 50.000 0.00 0.00 38.78 2.74
4528 7168 1.237285 GGATCGCCGCTAAATGCCAT 61.237 55.000 0.00 0.00 38.78 4.40
4529 7169 1.891919 GGATCGCCGCTAAATGCCA 60.892 57.895 0.00 0.00 38.78 4.92
4530 7170 1.166531 AAGGATCGCCGCTAAATGCC 61.167 55.000 0.00 0.00 39.96 4.40
4531 7171 1.508632 TAAGGATCGCCGCTAAATGC 58.491 50.000 0.00 0.00 39.96 3.56
4532 7172 4.545823 TTTTAAGGATCGCCGCTAAATG 57.454 40.909 0.00 0.00 39.96 2.32
4533 7173 4.396790 TGTTTTTAAGGATCGCCGCTAAAT 59.603 37.500 0.00 0.00 39.96 1.40
4534 7174 3.752222 TGTTTTTAAGGATCGCCGCTAAA 59.248 39.130 0.00 0.00 39.96 1.85
4535 7175 3.336468 TGTTTTTAAGGATCGCCGCTAA 58.664 40.909 0.00 0.00 39.96 3.09
4536 7176 2.933906 CTGTTTTTAAGGATCGCCGCTA 59.066 45.455 0.00 0.00 39.96 4.26
4537 7177 1.737793 CTGTTTTTAAGGATCGCCGCT 59.262 47.619 0.00 0.00 39.96 5.52
4538 7178 1.794076 GCTGTTTTTAAGGATCGCCGC 60.794 52.381 0.00 0.00 39.96 6.53
4539 7179 1.737793 AGCTGTTTTTAAGGATCGCCG 59.262 47.619 0.00 0.00 39.96 6.46
4540 7180 5.334182 GCTATAGCTGTTTTTAAGGATCGCC 60.334 44.000 17.75 0.00 38.21 5.54
4541 7181 5.612709 CGCTATAGCTGTTTTTAAGGATCGC 60.613 44.000 21.98 0.00 39.32 4.58
4542 7182 5.107453 CCGCTATAGCTGTTTTTAAGGATCG 60.107 44.000 21.98 1.11 39.32 3.69
4543 7183 5.334182 GCCGCTATAGCTGTTTTTAAGGATC 60.334 44.000 21.98 0.00 39.32 3.36
4544 7184 4.515567 GCCGCTATAGCTGTTTTTAAGGAT 59.484 41.667 21.98 0.00 39.32 3.24
4545 7185 3.875134 GCCGCTATAGCTGTTTTTAAGGA 59.125 43.478 21.98 0.00 39.32 3.36
4546 7186 3.625764 TGCCGCTATAGCTGTTTTTAAGG 59.374 43.478 21.98 13.07 39.32 2.69
4547 7187 4.875544 TGCCGCTATAGCTGTTTTTAAG 57.124 40.909 21.98 3.56 39.32 1.85
4548 7188 5.630661 TTTGCCGCTATAGCTGTTTTTAA 57.369 34.783 21.98 5.47 39.32 1.52
4549 7189 5.828299 ATTTGCCGCTATAGCTGTTTTTA 57.172 34.783 21.98 2.73 39.32 1.52
4550 7190 4.718940 ATTTGCCGCTATAGCTGTTTTT 57.281 36.364 21.98 1.13 39.32 1.94
4551 7191 4.082245 ACAATTTGCCGCTATAGCTGTTTT 60.082 37.500 21.98 6.03 39.32 2.43
4552 7192 3.443681 ACAATTTGCCGCTATAGCTGTTT 59.556 39.130 21.98 6.57 39.32 2.83
4553 7193 3.016736 ACAATTTGCCGCTATAGCTGTT 58.983 40.909 21.98 3.80 39.32 3.16
4554 7194 2.643551 ACAATTTGCCGCTATAGCTGT 58.356 42.857 21.98 14.25 39.32 4.40
4555 7195 6.313658 TCATATACAATTTGCCGCTATAGCTG 59.686 38.462 21.98 16.77 39.32 4.24
4556 7196 6.406370 TCATATACAATTTGCCGCTATAGCT 58.594 36.000 21.98 3.04 39.32 3.32
4557 7197 6.662414 TCATATACAATTTGCCGCTATAGC 57.338 37.500 15.09 15.09 37.78 2.97
4559 7199 9.838975 CAAATTCATATACAATTTGCCGCTATA 57.161 29.630 14.43 0.00 41.77 1.31
4560 7200 8.746922 CAAATTCATATACAATTTGCCGCTAT 57.253 30.769 14.43 0.00 41.77 2.97
4567 7207 6.200665 CCGGGTGCAAATTCATATACAATTTG 59.799 38.462 19.00 19.00 46.96 2.32
4568 7208 6.127196 ACCGGGTGCAAATTCATATACAATTT 60.127 34.615 6.32 0.29 34.42 1.82
4569 7209 5.362430 ACCGGGTGCAAATTCATATACAATT 59.638 36.000 6.32 0.00 0.00 2.32
4570 7210 4.892934 ACCGGGTGCAAATTCATATACAAT 59.107 37.500 6.32 0.00 0.00 2.71
4571 7211 4.274147 ACCGGGTGCAAATTCATATACAA 58.726 39.130 6.32 0.00 0.00 2.41
4572 7212 3.880490 GACCGGGTGCAAATTCATATACA 59.120 43.478 3.30 0.00 0.00 2.29
4573 7213 3.880490 TGACCGGGTGCAAATTCATATAC 59.120 43.478 3.30 0.00 0.00 1.47
4574 7214 4.157849 TGACCGGGTGCAAATTCATATA 57.842 40.909 3.30 0.00 0.00 0.86
4575 7215 3.011566 TGACCGGGTGCAAATTCATAT 57.988 42.857 3.30 0.00 0.00 1.78
4576 7216 2.498644 TGACCGGGTGCAAATTCATA 57.501 45.000 3.30 0.00 0.00 2.15
4577 7217 1.626686 TTGACCGGGTGCAAATTCAT 58.373 45.000 3.30 0.00 0.00 2.57
4578 7218 1.067821 GTTTGACCGGGTGCAAATTCA 59.932 47.619 20.11 3.26 36.51 2.57
4579 7219 1.067821 TGTTTGACCGGGTGCAAATTC 59.932 47.619 20.11 12.85 36.51 2.17
4580 7220 1.115467 TGTTTGACCGGGTGCAAATT 58.885 45.000 20.11 0.00 36.51 1.82
4581 7221 1.115467 TTGTTTGACCGGGTGCAAAT 58.885 45.000 20.11 0.00 36.51 2.32
4582 7222 0.895530 TTTGTTTGACCGGGTGCAAA 59.104 45.000 3.30 12.07 0.00 3.68
4583 7223 0.895530 TTTTGTTTGACCGGGTGCAA 59.104 45.000 3.30 6.18 0.00 4.08
4584 7224 1.115467 ATTTTGTTTGACCGGGTGCA 58.885 45.000 3.30 0.00 0.00 4.57
4585 7225 2.131972 GAATTTTGTTTGACCGGGTGC 58.868 47.619 3.30 0.00 0.00 5.01
4586 7226 3.444703 TGAATTTTGTTTGACCGGGTG 57.555 42.857 3.30 0.00 0.00 4.61
4587 7227 5.793030 TTATGAATTTTGTTTGACCGGGT 57.207 34.783 6.32 0.00 0.00 5.28
4588 7228 7.484035 TTTTTATGAATTTTGTTTGACCGGG 57.516 32.000 6.32 0.00 0.00 5.73
4624 7264 9.777297 CCCTAATTTCTTTTGGAATTTTCTGAA 57.223 29.630 0.00 0.00 32.54 3.02
4625 7265 8.933653 ACCCTAATTTCTTTTGGAATTTTCTGA 58.066 29.630 0.00 0.00 32.54 3.27
4626 7266 8.992073 CACCCTAATTTCTTTTGGAATTTTCTG 58.008 33.333 0.00 0.00 32.54 3.02
4627 7267 8.156820 CCACCCTAATTTCTTTTGGAATTTTCT 58.843 33.333 0.00 0.00 32.54 2.52
4628 7268 7.936847 ACCACCCTAATTTCTTTTGGAATTTTC 59.063 33.333 0.00 0.00 32.54 2.29
4629 7269 7.811282 ACCACCCTAATTTCTTTTGGAATTTT 58.189 30.769 0.00 0.00 32.54 1.82
4630 7270 7.387265 ACCACCCTAATTTCTTTTGGAATTT 57.613 32.000 0.00 0.00 32.54 1.82
4631 7271 7.953493 TCTACCACCCTAATTTCTTTTGGAATT 59.047 33.333 0.00 0.00 32.54 2.17
4632 7272 7.396339 GTCTACCACCCTAATTTCTTTTGGAAT 59.604 37.037 0.00 0.00 32.54 3.01
4633 7273 6.717997 GTCTACCACCCTAATTTCTTTTGGAA 59.282 38.462 0.00 0.00 32.54 3.53
4634 7274 6.183361 TGTCTACCACCCTAATTTCTTTTGGA 60.183 38.462 0.00 0.00 32.54 3.53
4635 7275 6.007703 TGTCTACCACCCTAATTTCTTTTGG 58.992 40.000 0.00 0.00 0.00 3.28
4636 7276 7.519032 TTGTCTACCACCCTAATTTCTTTTG 57.481 36.000 0.00 0.00 0.00 2.44
4637 7277 8.721133 AATTGTCTACCACCCTAATTTCTTTT 57.279 30.769 0.00 0.00 0.00 2.27
4638 7278 8.585018 CAAATTGTCTACCACCCTAATTTCTTT 58.415 33.333 0.00 0.00 0.00 2.52
4639 7279 7.947890 TCAAATTGTCTACCACCCTAATTTCTT 59.052 33.333 0.00 0.00 0.00 2.52
4640 7280 7.466804 TCAAATTGTCTACCACCCTAATTTCT 58.533 34.615 0.00 0.00 0.00 2.52
4641 7281 7.696992 TCAAATTGTCTACCACCCTAATTTC 57.303 36.000 0.00 0.00 0.00 2.17
4642 7282 7.363793 GCATCAAATTGTCTACCACCCTAATTT 60.364 37.037 0.00 0.00 0.00 1.82
4643 7283 6.096846 GCATCAAATTGTCTACCACCCTAATT 59.903 38.462 0.00 0.00 0.00 1.40
4644 7284 5.594317 GCATCAAATTGTCTACCACCCTAAT 59.406 40.000 0.00 0.00 0.00 1.73
4645 7285 4.947388 GCATCAAATTGTCTACCACCCTAA 59.053 41.667 0.00 0.00 0.00 2.69
4646 7286 4.523083 GCATCAAATTGTCTACCACCCTA 58.477 43.478 0.00 0.00 0.00 3.53
4647 7287 3.356290 GCATCAAATTGTCTACCACCCT 58.644 45.455 0.00 0.00 0.00 4.34
4648 7288 2.097466 CGCATCAAATTGTCTACCACCC 59.903 50.000 0.00 0.00 0.00 4.61
4649 7289 2.747446 ACGCATCAAATTGTCTACCACC 59.253 45.455 0.00 0.00 0.00 4.61
4650 7290 3.435327 TCACGCATCAAATTGTCTACCAC 59.565 43.478 0.00 0.00 0.00 4.16
4651 7291 3.669536 TCACGCATCAAATTGTCTACCA 58.330 40.909 0.00 0.00 0.00 3.25
4652 7292 3.063997 CCTCACGCATCAAATTGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
4653 7293 3.684788 ACCTCACGCATCAAATTGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
4654 7294 3.937814 ACCTCACGCATCAAATTGTCTA 58.062 40.909 0.00 0.00 0.00 2.59
4655 7295 2.783135 ACCTCACGCATCAAATTGTCT 58.217 42.857 0.00 0.00 0.00 3.41
4656 7296 3.435327 TGTACCTCACGCATCAAATTGTC 59.565 43.478 0.00 0.00 0.00 3.18
4657 7297 3.188460 GTGTACCTCACGCATCAAATTGT 59.812 43.478 0.00 0.00 37.60 2.71
4658 7298 3.747193 GTGTACCTCACGCATCAAATTG 58.253 45.455 0.00 0.00 37.60 2.32
4669 7309 7.757624 TGTTTTGAAAATTGAAGTGTACCTCAC 59.242 33.333 0.00 0.00 46.46 3.51
4670 7310 7.831753 TGTTTTGAAAATTGAAGTGTACCTCA 58.168 30.769 0.00 0.00 0.00 3.86
4671 7311 8.871686 ATGTTTTGAAAATTGAAGTGTACCTC 57.128 30.769 0.00 0.00 0.00 3.85
4672 7312 9.665719 AAATGTTTTGAAAATTGAAGTGTACCT 57.334 25.926 0.00 0.00 0.00 3.08
4673 7313 9.701355 CAAATGTTTTGAAAATTGAAGTGTACC 57.299 29.630 0.00 0.00 0.00 3.34
4674 7314 9.701355 CCAAATGTTTTGAAAATTGAAGTGTAC 57.299 29.630 4.54 0.00 0.00 2.90
4675 7315 9.658799 TCCAAATGTTTTGAAAATTGAAGTGTA 57.341 25.926 4.54 0.00 0.00 2.90
4676 7316 8.450180 GTCCAAATGTTTTGAAAATTGAAGTGT 58.550 29.630 4.54 0.00 0.00 3.55
4677 7317 8.667463 AGTCCAAATGTTTTGAAAATTGAAGTG 58.333 29.630 4.54 0.00 0.00 3.16
4678 7318 8.791327 AGTCCAAATGTTTTGAAAATTGAAGT 57.209 26.923 4.54 0.00 0.00 3.01
4679 7319 9.706846 GAAGTCCAAATGTTTTGAAAATTGAAG 57.293 29.630 4.54 0.00 0.00 3.02
4680 7320 9.447157 AGAAGTCCAAATGTTTTGAAAATTGAA 57.553 25.926 4.54 0.00 0.00 2.69
4681 7321 8.881743 CAGAAGTCCAAATGTTTTGAAAATTGA 58.118 29.630 4.54 0.00 0.00 2.57
4682 7322 8.667463 ACAGAAGTCCAAATGTTTTGAAAATTG 58.333 29.630 0.00 0.00 0.00 2.32
4683 7323 8.667463 CACAGAAGTCCAAATGTTTTGAAAATT 58.333 29.630 0.00 0.00 0.00 1.82
4684 7324 7.201635 GCACAGAAGTCCAAATGTTTTGAAAAT 60.202 33.333 0.00 0.00 0.00 1.82
4685 7325 6.091986 GCACAGAAGTCCAAATGTTTTGAAAA 59.908 34.615 1.65 0.00 0.00 2.29
4686 7326 5.580297 GCACAGAAGTCCAAATGTTTTGAAA 59.420 36.000 1.65 0.00 0.00 2.69
4687 7327 5.108517 GCACAGAAGTCCAAATGTTTTGAA 58.891 37.500 1.65 0.00 0.00 2.69
4688 7328 4.159321 TGCACAGAAGTCCAAATGTTTTGA 59.841 37.500 1.65 0.00 0.00 2.69
4689 7329 4.431809 TGCACAGAAGTCCAAATGTTTTG 58.568 39.130 0.00 0.00 0.00 2.44
4690 7330 4.160252 ACTGCACAGAAGTCCAAATGTTTT 59.840 37.500 4.31 0.00 0.00 2.43
4691 7331 3.701040 ACTGCACAGAAGTCCAAATGTTT 59.299 39.130 4.31 0.00 0.00 2.83
4692 7332 3.290710 ACTGCACAGAAGTCCAAATGTT 58.709 40.909 4.31 0.00 0.00 2.71
4693 7333 2.936202 ACTGCACAGAAGTCCAAATGT 58.064 42.857 4.31 0.00 0.00 2.71
4694 7334 3.996150 AACTGCACAGAAGTCCAAATG 57.004 42.857 4.31 0.00 0.00 2.32
4695 7335 4.402155 TGAAAACTGCACAGAAGTCCAAAT 59.598 37.500 4.31 0.00 0.00 2.32
4696 7336 3.761218 TGAAAACTGCACAGAAGTCCAAA 59.239 39.130 4.31 0.00 0.00 3.28
4697 7337 3.351740 TGAAAACTGCACAGAAGTCCAA 58.648 40.909 4.31 0.00 0.00 3.53
4698 7338 2.945008 CTGAAAACTGCACAGAAGTCCA 59.055 45.455 4.31 0.00 34.07 4.02
4699 7339 2.287248 GCTGAAAACTGCACAGAAGTCC 60.287 50.000 4.31 0.00 34.07 3.85
4700 7340 2.355756 TGCTGAAAACTGCACAGAAGTC 59.644 45.455 4.31 0.00 34.07 3.01
4701 7341 2.368439 TGCTGAAAACTGCACAGAAGT 58.632 42.857 4.31 0.00 34.07 3.01
4702 7342 3.425577 TTGCTGAAAACTGCACAGAAG 57.574 42.857 4.31 0.00 34.07 2.85
4703 7343 3.865011 TTTGCTGAAAACTGCACAGAA 57.135 38.095 4.31 0.00 34.07 3.02
4704 7344 3.865011 TTTTGCTGAAAACTGCACAGA 57.135 38.095 4.31 0.00 34.07 3.41
4740 7380 9.944376 AAATGTGTACTGTTCATATACTGTTCT 57.056 29.630 0.00 0.00 33.15 3.01
4749 7389 8.995220 GGTCTGTAAAAATGTGTACTGTTCATA 58.005 33.333 0.00 0.00 0.00 2.15
4750 7390 7.719633 AGGTCTGTAAAAATGTGTACTGTTCAT 59.280 33.333 0.00 0.00 0.00 2.57
4751 7391 7.051623 AGGTCTGTAAAAATGTGTACTGTTCA 58.948 34.615 0.00 0.00 0.00 3.18
4752 7392 7.441458 AGAGGTCTGTAAAAATGTGTACTGTTC 59.559 37.037 0.00 0.00 0.00 3.18
4753 7393 7.226720 CAGAGGTCTGTAAAAATGTGTACTGTT 59.773 37.037 0.00 0.00 39.09 3.16
4754 7394 6.706270 CAGAGGTCTGTAAAAATGTGTACTGT 59.294 38.462 0.00 0.00 39.09 3.55
4755 7395 6.929049 TCAGAGGTCTGTAAAAATGTGTACTG 59.071 38.462 6.87 0.00 44.12 2.74
4756 7396 7.062749 TCAGAGGTCTGTAAAAATGTGTACT 57.937 36.000 6.87 0.00 44.12 2.73
4757 7397 7.907214 ATCAGAGGTCTGTAAAAATGTGTAC 57.093 36.000 6.87 0.00 44.12 2.90
4758 7398 8.783093 CAAATCAGAGGTCTGTAAAAATGTGTA 58.217 33.333 6.87 0.00 44.12 2.90
4759 7399 7.285401 ACAAATCAGAGGTCTGTAAAAATGTGT 59.715 33.333 6.87 2.07 44.12 3.72
4760 7400 7.651808 ACAAATCAGAGGTCTGTAAAAATGTG 58.348 34.615 6.87 1.50 44.12 3.21
4761 7401 7.040409 GGACAAATCAGAGGTCTGTAAAAATGT 60.040 37.037 6.87 5.45 44.12 2.71
4762 7402 7.175641 AGGACAAATCAGAGGTCTGTAAAAATG 59.824 37.037 6.87 2.80 44.12 2.32
4763 7403 7.234355 AGGACAAATCAGAGGTCTGTAAAAAT 58.766 34.615 6.87 0.00 44.12 1.82
4764 7404 6.601332 AGGACAAATCAGAGGTCTGTAAAAA 58.399 36.000 6.87 0.00 44.12 1.94
4765 7405 6.187727 AGGACAAATCAGAGGTCTGTAAAA 57.812 37.500 6.87 0.00 44.12 1.52
4766 7406 5.825593 AGGACAAATCAGAGGTCTGTAAA 57.174 39.130 6.87 0.00 44.12 2.01
4767 7407 5.825593 AAGGACAAATCAGAGGTCTGTAA 57.174 39.130 6.87 0.00 44.12 2.41
4768 7408 5.825593 AAAGGACAAATCAGAGGTCTGTA 57.174 39.130 6.87 0.00 44.12 2.74
4769 7409 4.713792 AAAGGACAAATCAGAGGTCTGT 57.286 40.909 6.87 0.00 44.12 3.41
4770 7410 5.766222 CAAAAAGGACAAATCAGAGGTCTG 58.234 41.667 0.10 0.10 45.08 3.51
4771 7411 4.279420 GCAAAAAGGACAAATCAGAGGTCT 59.721 41.667 0.00 0.00 0.00 3.85
4772 7412 4.279420 AGCAAAAAGGACAAATCAGAGGTC 59.721 41.667 0.00 0.00 0.00 3.85
4773 7413 4.038402 CAGCAAAAAGGACAAATCAGAGGT 59.962 41.667 0.00 0.00 0.00 3.85
4774 7414 4.279169 TCAGCAAAAAGGACAAATCAGAGG 59.721 41.667 0.00 0.00 0.00 3.69
4775 7415 5.240183 TCTCAGCAAAAAGGACAAATCAGAG 59.760 40.000 0.00 0.00 0.00 3.35
4776 7416 5.132502 TCTCAGCAAAAAGGACAAATCAGA 58.867 37.500 0.00 0.00 0.00 3.27
4777 7417 5.443185 TCTCAGCAAAAAGGACAAATCAG 57.557 39.130 0.00 0.00 0.00 2.90
4778 7418 4.261741 GCTCTCAGCAAAAAGGACAAATCA 60.262 41.667 0.00 0.00 41.89 2.57
4779 7419 4.022503 AGCTCTCAGCAAAAAGGACAAATC 60.023 41.667 0.00 0.00 45.56 2.17
4780 7420 3.893813 AGCTCTCAGCAAAAAGGACAAAT 59.106 39.130 0.00 0.00 45.56 2.32
4781 7421 3.067180 CAGCTCTCAGCAAAAAGGACAAA 59.933 43.478 0.00 0.00 45.56 2.83
4782 7422 2.620115 CAGCTCTCAGCAAAAAGGACAA 59.380 45.455 0.00 0.00 45.56 3.18
4783 7423 2.224606 CAGCTCTCAGCAAAAAGGACA 58.775 47.619 0.00 0.00 45.56 4.02
4784 7424 1.068679 GCAGCTCTCAGCAAAAAGGAC 60.069 52.381 0.00 0.00 45.56 3.85
4785 7425 1.242076 GCAGCTCTCAGCAAAAAGGA 58.758 50.000 0.00 0.00 45.56 3.36
4786 7426 0.956633 TGCAGCTCTCAGCAAAAAGG 59.043 50.000 0.00 0.00 45.56 3.11
4787 7427 1.335810 TGTGCAGCTCTCAGCAAAAAG 59.664 47.619 0.00 0.00 45.56 2.27
4788 7428 1.335810 CTGTGCAGCTCTCAGCAAAAA 59.664 47.619 0.00 0.00 45.56 1.94
4789 7429 0.949397 CTGTGCAGCTCTCAGCAAAA 59.051 50.000 0.00 0.00 45.56 2.44
4790 7430 0.107268 TCTGTGCAGCTCTCAGCAAA 59.893 50.000 0.00 0.00 45.56 3.68
4791 7431 0.107268 TTCTGTGCAGCTCTCAGCAA 59.893 50.000 0.00 0.00 45.56 3.91
4792 7432 0.320508 CTTCTGTGCAGCTCTCAGCA 60.321 55.000 0.00 2.10 45.56 4.41
4793 7433 0.320596 ACTTCTGTGCAGCTCTCAGC 60.321 55.000 0.00 0.00 42.84 4.26
4794 7434 1.672441 GGACTTCTGTGCAGCTCTCAG 60.672 57.143 0.00 0.28 37.58 3.35
4795 7435 0.319728 GGACTTCTGTGCAGCTCTCA 59.680 55.000 0.00 0.00 34.50 3.27
4796 7436 0.319728 TGGACTTCTGTGCAGCTCTC 59.680 55.000 0.00 0.00 39.59 3.20
4797 7437 0.761187 TTGGACTTCTGTGCAGCTCT 59.239 50.000 0.00 0.00 44.96 4.09
4798 7438 1.597742 TTTGGACTTCTGTGCAGCTC 58.402 50.000 0.00 0.00 44.96 4.09
4799 7439 2.283145 ATTTGGACTTCTGTGCAGCT 57.717 45.000 0.00 0.00 44.96 4.24
4800 7440 4.708726 AATATTTGGACTTCTGTGCAGC 57.291 40.909 0.00 0.00 44.96 5.25
4801 7441 9.474920 TTTTAAAATATTTGGACTTCTGTGCAG 57.525 29.630 0.39 0.00 44.96 4.41
4802 7442 9.823647 TTTTTAAAATATTTGGACTTCTGTGCA 57.176 25.926 0.39 0.00 42.73 4.57
4819 7459 8.173130 CGTGAGGTACGCTCTAATTTTTAAAAT 58.827 33.333 0.55 0.00 46.92 1.82
4820 7460 7.512297 CGTGAGGTACGCTCTAATTTTTAAAA 58.488 34.615 11.21 0.00 46.92 1.52
4821 7461 7.052565 CGTGAGGTACGCTCTAATTTTTAAA 57.947 36.000 11.21 0.00 46.92 1.52
4822 7462 6.636666 CGTGAGGTACGCTCTAATTTTTAA 57.363 37.500 11.21 0.00 46.92 1.52
4836 7476 3.684788 AGACAATTTGATGCGTGAGGTAC 59.315 43.478 2.79 0.00 0.00 3.34
4837 7477 3.937814 AGACAATTTGATGCGTGAGGTA 58.062 40.909 2.79 0.00 0.00 3.08
4838 7478 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
4839 7479 3.063997 GGTAGACAATTTGATGCGTGAGG 59.936 47.826 2.79 0.00 0.00 3.86
4840 7480 3.684305 TGGTAGACAATTTGATGCGTGAG 59.316 43.478 2.79 0.00 0.00 3.51
4841 7481 3.669536 TGGTAGACAATTTGATGCGTGA 58.330 40.909 2.79 0.00 0.00 4.35
4842 7482 4.496341 GGATGGTAGACAATTTGATGCGTG 60.496 45.833 2.79 0.00 0.00 5.34
4843 7483 3.627577 GGATGGTAGACAATTTGATGCGT 59.372 43.478 2.79 0.00 0.00 5.24
4844 7484 3.879295 AGGATGGTAGACAATTTGATGCG 59.121 43.478 2.79 0.00 0.00 4.73
4845 7485 6.942532 TTAGGATGGTAGACAATTTGATGC 57.057 37.500 2.79 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.